Work Directory

Task
DAQ:BAM_POSTDEDUP_QC:SEQTOOL (1029_D1M-N1-BDNA-1_B23KFG5LT4_1)
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/d4e59cdf91fcd783564c72e1b1a84e

Files (72)

Name Size Modified
.command.begin 6 bytes May 27, 2026 10:05 AM
.command.err 8.7 KB May 27, 2026 10:17 AM
.command.log 29.1 KB May 27, 2026 10:17 AM
.command.out 17.9 KB May 27, 2026 10:17 AM
.command.run 17.4 KB May 27, 2026 10:05 AM
.command.sh 1.6 KB May 27, 2026 10:05 AM
.command.trace 280 bytes May 27, 2026 10:17 AM
.command.yaml 3.5 KB May 27, 2026 10:05 AM
.exitcode 1 byte May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md.depth.gz 145.1 MB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md.depth.gz.tbi 581.3 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md.depth.png 27.5 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md.depth_hist.tsv 10.9 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md.noise_summary.tsv 219 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/contamination.tsv 172 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 443 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv 452 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 453 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv 453 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv 450 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 453 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 451 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 453 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/fragsize.fragsize.png 35.0 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/fragsize.fragsize.table 310 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/full_bed.bed 4.6 MB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.FINAL_hotspot_list_07302025_hg38_sorted.bed.png 43.9 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.altera_v3_targets_coding_postQC_hg38.bed.png 50.0 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.altera_v3_targets_noncoding_postQC_hg38.bed.png 51.8 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.altera_v3_targets_postQC_hg38.bed.png 49.5 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.foresight_clarity_targets_hg38.bed.png 46.2 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.png 53.7 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.png 53.3 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.png 50.7 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 465 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 540 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 550 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv 545 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv 515 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 545 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 545 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 535 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/qc_complete.txt 29 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 617 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 620 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 620 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv 620 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.foresight_clarity_targets_hg38.bed.tsv 619 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 620 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 620 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 620 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 2.1 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv 262.6 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 289.5 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv 371.4 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv 57.0 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 5.4 MB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 5.2 MB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 7.0 MB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/saturation_plot.png 48.3 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/saturation_qc.tsv 78 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 68 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv 70 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 73 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv 63 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv 63 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 127 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 107 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 155 bytes May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1_basic_stats.tsv 1.4 KB May 27, 2026 10:17 AM
1029_D1M-N1-BDNA-1_B23KFG5LT4_1/1029_D1M-N1-BDNA-1_B23KFG5LT4_1_full_basic_stats.tsv 5.8 KB May 27, 2026 10:17 AM
versions.yml 49 bytes May 27, 2026 10:17 AM