cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_DK8-N1-BDNA-1_B23KFG5LT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_DK8-N1-BDNA-1_B23KFG5LT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 2.3s, est remaining 43.0s, peak mem 3169MB, user 55.2s, sys 2.9s, output queue size 174
progress 10% @chr2:15945493, elapsed 4.3s, est remaining 38.8s, peak mem 3399MB, user 105.3s, sys 3.7s, output queue size 663
progress 15% @chr2:189666133, elapsed 8.0s, est remaining 45.2s, peak mem 3518MB, user 194.0s, sys 4.7s, output queue size 451
progress 20% @chr3:98149386, elapsed 12.4s, est remaining 49.5s, peak mem 3589MB, user 303.3s, sys 6.0s, output queue size 432
progress 25% @chr4:88467059, elapsed 15.7s, est remaining 47.2s, peak mem 3599MB, user 386.3s, sys 6.8s, output queue size 90
progress 30% @chr5:146514854, elapsed 18.6s, est remaining 43.5s, peak mem 3639MB, user 458.3s, sys 7.4s, output queue size 209
progress 35% @chr6:132401163, elapsed 22.9s, est remaining 42.5s, peak mem 3687MB, user 562.3s, sys 8.4s, output queue size 642
progress 40% @chr7:102248412, elapsed 27.6s, est remaining 41.4s, peak mem 3731MB, user 669.4s, sys 9.2s, output queue size 1426
progress 45% @chr9:2123719, elapsed 31.2s, est remaining 38.1s, peak mem 3770MB, user 762.2s, sys 10.0s, output queue size 671
progress 50% @chr10:32928094, elapsed 33.9s, est remaining 33.9s, peak mem 3790MB, user 829.0s, sys 10.4s, output queue size 106
progress 55% @chr11:48136039, elapsed 36.0s, est remaining 29.5s, peak mem 3790MB, user 883.1s, sys 10.9s, output queue size 15
progress 60% @chr12:25096910, elapsed 38.5s, est remaining 25.7s, peak mem 3790MB, user 944.7s, sys 11.3s, output queue size 757
progress 65% @chr13:49544737, elapsed 40.9s, est remaining 22.0s, peak mem 3820MB, user 1002.4s, sys 11.9s, output queue size 561
progress 70% @chr15:42449771, elapsed 43.2s, est remaining 18.5s, peak mem 3822MB, user 1059.7s, sys 12.7s, output queue size 458
progress 75% @chr16:30737049, elapsed 45.8s, est remaining 15.3s, peak mem 3822MB, user 1129.4s, sys 13.2s, output queue size 68
progress 80% @chr17:42697554, elapsed 48.5s, est remaining 12.1s, peak mem 3822MB, user 1197.0s, sys 14.2s, output queue size 706
progress 85% @chr19:5719704, elapsed 50.8s, est remaining 9.0s, peak mem 3822MB, user 1255.2s, sys 14.8s, output queue size 401
progress 90% @chr19:56003716, elapsed 53.0s, est remaining 5.9s, peak mem 3822MB, user 1312.6s, sys 15.4s, output queue size 151
progress 95% @chr22:36511503, elapsed 55.5s, est remaining 2.9s, peak mem 3862MB, user 1374.6s, sys 16.0s, output queue size 55
progress 100% @chrY:25622443, elapsed 57.0s, est remaining 0.0s, peak mem 3863MB, user 1411.1s, sys 16.4s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 13249155030
reads: 286895517
contig: 201779 intervals 37922265 bases
advance: 208647 calls 610.714 user 9.531 sys 648.771 real
done: 1 calls 0.367 user 0.342 sys 0.715 real
execute: 1 calls 0.006 user 0.001 sys 57.009 real
fetch_reads: 208647 calls 55.406 user 0.190 sys 59.249 real
fetch_ref: 207130 calls 0.946 user 1.041 sys 1.861 real
fetch_vcf: 207130 calls 87.091 user 2.060 sys 95.909 real
idle: 92 calls 0.172 user 0.010 sys 31.836 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 273834 calls 886.282 user 3.092 sys 915.310 real
overall: 4051574784 mem 1715.463 user 17.629 sys 58.427 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory