cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BH0W-N1-BDNA-1_B23KFG5LT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_BH0W-N1-BDNA-1_B23KFG5LT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:120160384, elapsed 2.5s, est remaining 47.3s, peak mem 3331MB, user 61.6s, sys 3.3s, output queue size 184
progress 10% @chr2:23786027, elapsed 4.6s, est remaining 41.5s, peak mem 3589MB, user 114.1s, sys 4.3s, output queue size 1170
progress 15% @chr2:189666133, elapsed 7.4s, est remaining 41.8s, peak mem 3806MB, user 180.9s, sys 5.3s, output queue size 453
progress 20% @chr3:98901122, elapsed 10.2s, est remaining 40.7s, peak mem 3876MB, user 252.3s, sys 6.2s, output queue size 436
progress 25% @chr4:88523498, elapsed 12.4s, est remaining 37.1s, peak mem 3906MB, user 306.9s, sys 6.9s, output queue size 540
progress 30% @chr5:147896993, elapsed 14.2s, est remaining 33.2s, peak mem 3906MB, user 353.6s, sys 7.5s, output queue size 213
progress 35% @chr6:131890341, elapsed 17.0s, est remaining 31.6s, peak mem 3954MB, user 422.2s, sys 8.1s, output queue size 637
progress 40% @chr7:128856518, elapsed 20.2s, est remaining 30.2s, peak mem 4018MB, user 495.0s, sys 9.0s, output queue size 1470
progress 45% @chr9:990041, elapsed 23.4s, est remaining 28.6s, peak mem 4071MB, user 580.0s, sys 9.9s, output queue size 86
progress 50% @chr10:33207572, elapsed 26.2s, est remaining 26.2s, peak mem 4124MB, user 650.4s, sys 10.6s, output queue size 106
progress 55% @chr11:47589821, elapsed 28.5s, est remaining 23.3s, peak mem 4124MB, user 706.6s, sys 11.0s, output queue size 112
progress 60% @chr12:25149628, elapsed 31.2s, est remaining 20.8s, peak mem 4132MB, user 774.9s, sys 11.7s, output queue size 767
progress 65% @chr13:49496002, elapsed 33.7s, est remaining 18.2s, peak mem 4132MB, user 839.1s, sys 12.4s, output queue size 570
progress 70% @chr15:43059702, elapsed 36.2s, est remaining 15.5s, peak mem 4132MB, user 900.2s, sys 13.0s, output queue size 454
progress 75% @chr16:30737049, elapsed 39.2s, est remaining 13.1s, peak mem 4132MB, user 976.7s, sys 13.6s, output queue size 256
progress 80% @chr17:42688462, elapsed 42.2s, est remaining 10.5s, peak mem 4132MB, user 1053.4s, sys 14.6s, output queue size 705
progress 85% @chr19:5687753, elapsed 44.8s, est remaining 7.9s, peak mem 4132MB, user 1120.4s, sys 15.2s, output queue size 405
progress 90% @chr19:55762598, elapsed 47.3s, est remaining 5.3s, peak mem 4132MB, user 1184.7s, sys 15.7s, output queue size 149
progress 95% @chr22:36763919, elapsed 50.0s, est remaining 2.6s, peak mem 4152MB, user 1253.6s, sys 16.3s, output queue size 56
progress 100% @chrY:25622443, elapsed 51.7s, est remaining 0.0s, peak mem 4152MB, user 1294.9s, sys 16.7s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 14773017668
reads: 322449698
contig: 201779 intervals 37922265 bases
advance: 208647 calls 608.051 user 9.918 sys 644.719 real
done: 1 calls 0.397 user 0.369 sys 0.771 real
execute: 1 calls 0.007 user 0.002 sys 51.681 real
fetch_reads: 208647 calls 50.609 user 0.216 sys 53.613 real
fetch_ref: 207204 calls 0.888 user 0.681 sys 1.739 real
fetch_vcf: 207204 calls 79.470 user 2.079 sys 83.544 real
idle: 92 calls 0.118 user 0.000 sys 31.927 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 279192 calls 746.835 user 3.586 sys 781.005 real
overall: 4354383872 mem 1557.767 user 18.208 sys 53.131 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory