File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/3b63a72dfe8c3aa51a7426081476d1/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (1029_01F-N1-BDNA-1_B23KFG5LT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/c1ab333be41909955de056d08c3cf7/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/85848b288c369efaf7f15534cf44ae/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/bdc51f6e01b84dce28a4d90d5fb869/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/3b63a72dfe8c3aa51a7426081476d1/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/6b46d377e5db5d461965af0c49bfbb/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/3824174382c58563fb9fd47793bfec/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/f543ed54e6352e0e69fe160ae5b8c2/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/3b63a72dfe8c3aa51a7426081476d1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/cc8d95c313055cc4bfc17b6768d03f/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/7c57807043d067f8e2d2e8c07d89bc/1029_01F-N1-BDNA-1_B23KFG5LT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory