Processes


BCL_TO_FASTQ:BCLCONVERT	8
BCL_TO_FASTQ:SAMPLESHEET_CHECK	1
DAQ:FLOWCELL_QC	1
DAQ:CAT_FASTQ	192	1
FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ	192
FASTQ_NGSCHECKMATE:NGSCHECKMATE_VAFNCM	1
DAQ:ESTIMATEGENDER	192	1
DAQ:MERGE_GENDER	1
DAQ:FASTP	1536	8
DAQ:SENTIEON_BWAMEM	1536	26
DAQ:SAMTOOLS_MERGE	192	4
DAQ:MARKDUPLICATES_SENTIEON	192	2
BAM_POSTDEDUP_QC:SAMTOOLS_STATS	192	2
BAM_POSTDEDUP_QC:MOSDEPTH	192	2
BAM_POSTDEDUP_QC:SENTIEON_MULTIPLE_METRICS	192
BAM_POSTDEDUP_QC:SENTIEON_HSMETRICS	1536	14
BAM_POSTDEDUP_QC:SEQTOOL	192	4
SENTIEON_BQSR:QUALCAL_TABLE	192
SENTIEON_BQSR:QUALCAL_APPLY	192	3
DAQ:AGGREGATE_POSTDEDUP_QC	1
DAQ:QC_JSON_TO_CSV	1
DAQ:MULTIQC	1
DAQ:WRITE_TRACKER_YML	1
DAQ:GENERATE_RESULTS_CSV	1
GERMLINE_CNV:ClusterPanelRegions
GERMLINE_CNV:CalcPanelCoverage
GERMLINE_CNV:ProcessBatch
GERMLINE_CNV:ModelSingle
GERMLINE_CNV:AggregateBatchPerSampleData