succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 7s 3s - - 5.4 MB 103% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 7s 6s - - 6.2 MB 110% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 5s 3s - - 6.1 MB 110% 1.5 MB 401.0 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 5s 4s - - 6.2 MB 104% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 5s 4s - - 3.3 MB 133% 390.7 KB 84.0 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 5s 3s - - 5.9 MB 105% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 5s 4s - - 6.1 MB 116% 1.5 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 5s 0s 0s 0 bytes 119% 70.1 KB 608 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (NA12878_rep1) 5m 6s 8s 2m 48s 2m 9s 1.5 GB 354% 41.5 GB 21.6 GB 0 bytes 722.1 MB 1
aborted NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (NA12878_rep1) - 58s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (NA12878_rep1) 5m 28s 5s 3m 11s 2m 12s 1.9 GB 222% 20.5 GB 676.1 MB 20.2 GB 676.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (NA12878_rep1) 10m 55s 5s 8m 39s 2m 11s 11.2 MB 135% 20.2 GB 154.4 KB 20.2 GB 156.0 KB 1
12 items found