|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed)
|
7s |
3s |
- |
- |
5.4 MB |
104% |
4.6 MB |
4.6 MB |
0 bytes |
4.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null)
|
5s |
4s |
- |
- |
6.1 MB |
108% |
6.0 MB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null)
|
5s |
4s |
- |
- |
6.1 MB |
110% |
1.5 MB |
401.1 KB |
0 bytes |
408.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null)
|
4s |
3s |
- |
- |
6.2 MB |
117% |
1.6 MB |
442.7 KB |
0 bytes |
448.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null)
|
5s |
3s |
- |
- |
3.3 MB |
132% |
390.8 KB |
84.1 KB |
0 bytes |
88.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null)
|
5s |
3s |
- |
- |
6.2 MB |
102% |
1.4 MB |
422.1 KB |
0 bytes |
428.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null)
|
4s |
2s |
- |
- |
6.1 MB |
105% |
1.5 MB |
432.2 KB |
0 bytes |
440.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
6s |
5s |
0s |
0s |
0 bytes |
133% |
70.2 KB |
622 bytes |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (NA12878_rep1)
|
27s |
21s |
4s |
2s |
444.2 MB |
329% |
100.4 MB |
2.5 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr14_64122012-64122133)
|
4m 21s |
7s |
3m 6s |
1m 7s |
1.2 GB |
791% |
17.1 GB |
3.5 MB |
0 bytes |
189.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr1_69091-70008)
|
3m 44s |
7s |
2m 29s |
1m 7s |
904.2 MB |
784% |
15.5 GB |
3.4 MB |
0 bytes |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr19_47340800-47341813)
|
1m 58s |
6s |
45s |
1m 6s |
756.2 MB |
770% |
3.3 GB |
882.2 KB |
0 bytes |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr4_30730753-30730788)
|
4m 53s |
6s |
3m 39s |
1m 7s |
1.0 GB |
790% |
14.7 GB |
3.3 MB |
0 bytes |
179.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr8_93795409-93795507)
|
4m 20s |
6s |
3m 6s |
1m 7s |
972.0 MB |
789% |
15.1 GB |
3.6 MB |
0 bytes |
191.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (NA12878_rep1)
|
11s |
7s |
1s |
2s |
47.3 MB |
1021% |
33.7 MB |
19.8 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (NA12878_rep1)
|
9s |
7s |
0s |
1s |
21.1 MB |
2408% |
2.0 MB |
46.3 KB |
0 bytes |
52.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (NA12878_rep1)
|
13s |
9s |
2s |
1s |
101.2 MB |
788% |
43.7 MB |
8.4 MB |
0 bytes |
8.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (NA12878_rep1;NA12878_rep1)
|
4m 13s |
6s |
2m 3s |
2m 4s |
480.5 MB |
100% |
26.1 GB |
20.3 MB |
26.1 GB |
20.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (NA12878_rep1;sentieon_haplotyper)
|
5s |
4s |
1s |
0s |
9.2 MB |
126% |
1.5 MB |
151.9 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (NA12878_rep1)
|
4m 17s |
8s |
2m 8s |
2m 0s |
1.5 GB |
389% |
41.5 GB |
21.6 GB |
0 bytes |
722.1 MB |
1 |