|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (NA12878_rep1)
|
1h 42m |
58s |
1h 41m |
6s |
28.7 GB |
118% |
746.4 MB |
102.6 MB |
0 bytes |
102.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (NA12878_rep1)
|
9s |
8s |
0s |
0s |
14.0 MB |
105% |
1005.3 KB |
2.0 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (NA12878_rep1)
|
4m 35s |
4s |
2m 35s |
1m 56s |
1.9 GB |
208% |
20.5 GB |
676.1 MB |
20.2 GB |
676.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (NA12878_rep1)
|
9m 12s |
3s |
7m 15s |
1m 54s |
11.1 MB |
129% |
20.2 GB |
154.5 KB |
20.2 GB |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:MULTIQC
|
1m 8s |
56s |
10s |
1s |
710.6 MB |
73% |
82.8 MB |
25.4 MB |
0 bytes |
24.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (NA12878_rep1;sentieon_haplotyper)
|
7s |
5s |
- |
- |
19.2 MB |
7989% |
1.6 MB |
346.4 KB |
0 bytes |
352.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_SUMMARY (NA12878_rep1;sentieon_haplotyper)
|
6s |
4s |
- |
- |
13.5 MB |
92% |
1.5 MB |
2.4 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_COUNT (NA12878_rep1;sentieon_haplotyper)
|
6s |
4s |
- |
- |
11.5 MB |
101% |
1.5 MB |
2.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_QUAL (NA12878_rep1;sentieon_haplotyper)
|
6s |
4s |
- |
- |
14.0 MB |
98% |
1.5 MB |
615.6 KB |
0 bytes |
624.0 KB |
1 |