File Info
- Filename
- 1166b_JAR.cnv.hmnz.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/01_altera_exact_survey_feb26/Harmonize_dspe1166__b003992--20260226-163831/1166b_JAR/variants/cnv/1166b_JAR.cnv.hmnz.tsv
- Size
- 4.2 KB
- Workflow Run
- Harmonize_dspe1166
- Published
- Feb 26, 2026 8:47 AM
Content
View in new tab| sample | gene | amp_del | log2_ratio | chrom | gene_start | gene_end | consequence |
| 1166b_JAR | CYR61 | AMP | 1.06913 | chr1 | 85580760 | 85583962 | DUP |
| 1166b_JAR | TXNIP | AMP | 1.16368 | chr1 | 145992435 | 145996601 | DUP |
| 1166b_JAR | HIST2H2AC | AMP | 1.1246 | chr1 | 149886974 | 149887411 | DUP |
| 1166b_JAR | PPP1R15B | AMP | 1.35976 | chr1 | 204403386 | 204411791 | DUP |
| 1166b_JAR | C1orf116 | AMP | 1.17314 | chr1 | 207018520 | 207032747 | DUP |
| 1166b_JAR | YOD1 | AMP | 1.29143 | chr1 | 207043848 | 207051077 | DUP |
| 1166b_JAR | REG3G | DEL | -1.43086 | chr2 | 79025700 | 79028502 | DEL |
| 1166b_JAR | LRRTM1 | DEL | -1.62346 | chr2 | 80298180 | 80304730 | DEL |
| 1166b_JAR | SMYD1 | DEL | -1.44996 | chr2 | 88067779 | 88113387 | DEL |
| 1166b_JAR | TEX37 | DEL | -1.37968 | chr2 | 88524650 | 88529584 | DEL |
| 1166b_JAR | DLX1 | AMP | 1.11605 | chr2 | 172085225 | 172089677 | DUP |
| 1166b_JAR | RPL37A | AMP | 1.03688 | chr2 | 216498188 | 216503551 | DUP |
| 1166b_JAR | WDR49 | DEL | -1.37069 | chr3 | 167478683 | 167653501 | DEL |
| 1166b_JAR | ATP13A5 | DEL | -1.47123 | chr3 | 193274789 | 193378843 | DEL |
| 1166b_JAR | H2AFZ | AMP | 1.12597 | chr4 | 99948087 | 99950388 | DUP |
| 1166b_JAR | ANXA2R | AMP | 1.07091 | chr5 | 43039232 | 43043170 | DUP |
| 1166b_JAR | TIGD6 | AMP | 1.19509 | chr5 | 149993117 | 150001167 | DUP |
| 1166b_JAR | HIST1H1C | AMP | 1.3076 | chr6 | 26055739 | 26056471 | DUP |
| 1166b_JAR | HIST1H1E | AMP | 1.33223 | chr6 | 26156330 | 26157115 | DUP |
| 1166b_JAR | TUBB | AMP | 1.34158 | chr6 | 30720200 | 30725426 | DUP |
| 1166b_JAR | CLIC1 | AMP | 1.34147 | chr6 | 31730580 | 31737318 | DUP |
| 1166b_JAR | FKBPL | AMP | 1.32682 | chr6 | 32128706 | 32130291 | DUP |
| 1166b_JAR | RPS18 | AMP | 1.33671 | chr6 | 33272009 | 33276510 | DUP |
| 1166b_JAR | ZBTB22 | AMP | 1.32807 | chr6 | 33314417 | 33317735 | DUP |
| 1166b_JAR | RPL10A | AMP | 1.49719 | chr6 | 35468407 | 35470785 | DUP |
| 1166b_JAR | CITED2 | AMP | 1.19943 | chr6 | 139372255 | 139374620 | DUP |
| 1166b_JAR | TMUB1 | AMP | 1.50562 | chr7 | 151081084 | 151083091 | DUP |
| 1166b_JAR | CSMD1 | DEL | -1.41013 | chr8 | 2938584 | 4994416 | DEL |
| 1166b_JAR | SGK223 | DEL | -2.38527 | chr8 | 8317736 | 8386498 | DEL |
| 1166b_JAR | CLDN23 | DEL | -2.4134 | chr8 | 8701937 | 8704106 | DEL |
| 1166b_JAR | MFHAS1 | DEL | -1.91368 | chr8 | 8783353 | 8893645 | DEL |
| 1166b_JAR | ERI1 | DEL | -2.30296 | chr8 | 9002146 | 9033338 | DEL |
| 1166b_JAR | PPP1R3B | DEL | -2.07782 | chr8 | 9136254 | 9150696 | DEL |
| 1166b_JAR | USP17L2 | DEL | -1.37222 | chr8 | 12137167 | 12139077 | DEL |
| 1166b_JAR | NRG1 | DEL | -1.41281 | chr8 | 32548209 | 32765030 | DEL |
| 1166b_JAR | RRS1 | AMP | 1.65819 | chr8 | 66429027 | 66430731 | DUP |
| 1166b_JAR | RPL7 | AMP | 1.63069 | chr8 | 73290638 | 73293898 | DUP |
| 1166b_JAR | HEY1 | AMP | 1.55951 | chr8 | 79764012 | 79767857 | DUP |
| 1166b_JAR | MRPS28 | AMP | 1.5891 | chr8 | 79918716 | 80030271 | DUP |
| 1166b_JAR | GADD45G | AMP | 1.57792 | chr9 | 89605012 | 89606555 | DUP |
| 1166b_JAR | FAM120AOS | AMP | 1.25262 | chr9 | 93446493 | 93453592 | DUP |
| 1166b_JAR | JMJD1C | AMP | 1.13701 | chr10 | 63167220 | 63465881 | DUP |
| 1166b_JAR | KLLN | AMP | 1.10119 | chr10 | 87859160 | 87863437 | DUP |
| 1166b_JAR | C12orf57 | AMP | 1.08661 | chr12 | 6944022 | 6946002 | DUP |
| 1166b_JAR | H2AFJ | AMP | 1.16054 | chr12 | 14774335 | 14778000 | DUP |
| 1166b_JAR | TUBA3C | DEL | -1.90117 | chr13 | 19173769 | 19181852 | DEL |
| 1166b_JAR | C1QTNF9 | DEL | -1.48832 | chr13 | 24307165 | 24322535 | DEL |
| 1166b_JAR | SPERT | DEL | -1.47177 | chr13 | 45702310 | 45714558 | DEL |
| 1166b_JAR | NDUFB1 | AMP | 1.26081 | chr14 | 92116122 | 92121917 | DUP |
| 1166b_JAR | TMEM251 | AMP | 1.17463 | chr14 | 93185012 | 93187089 | DUP |
| 1166b_JAR | YY1 | AMP | 1.34804 | chr14 | 100238984 | 100282792 | DUP |
| 1166b_JAR | ZBTB42 | AMP | 1.20131 | chr14 | 104800912 | 104804712 | DUP |
| 1166b_JAR | CDH8 | DEL | -1.48877 | chr16 | 61647241 | 62036835 | DEL |
| 1166b_JAR | CNTNAP4 | DEL | -1.40556 | chr16 | 76309896 | 76558683 | DEL |
| 1166b_JAR | AC040977.1 | AMP | 1.09954 | chr17 | 7012608 | 7014436 | DUP |
| 1166b_JAR | TNFSF13 | AMP | 1.05794 | chr17 | 7558596 | 7561608 | DUP |
| 1166b_JAR | LSMD1 | AMP | 1.09057 | chr17 | 7856684 | 7857854 | DUP |
| 1166b_JAR | AC003043.1 | DEL | -1.37668 | chr17 | 44257928 | 44278457 | DEL |
| 1166b_JAR | LRRC37A | DEL | -2.51295 | chr17 | 46295130 | 46337794 | DEL |
| 1166b_JAR | SRSF1 | AMP | 1.10045 | chr17 | 58004848 | 58007346 | DUP |
| 1166b_JAR | ACTG1 | AMP | 1.0564 | chr17 | 81509988 | 81512781 | DUP |
| 1166b_JAR | DYNAP | DEL | -1.35459 | chr18 | 54591158 | 54599493 | DEL |
| 1166b_JAR | MC4R | DEL | -1.57603 | chr18 | 60371330 | 60372768 | DEL |
| 1166b_JAR | FTL | AMP | 1.06431 | chr19 | 48965300 | 48966878 | DUP |
| 1166b_JAR | KLK3 | AMP | 1.09281 | chr19 | 50854914 | 50860763 | DUP |
| 1166b_JAR | KLK2 | AMP | 1.05211 | chr19 | 50873248 | 50880567 | DUP |
| 1166b_JAR | RFPL4AL1 | DEL | -1.59911 | chr19 | 55769140 | 55773179 | DEL |
| 1166b_JAR | NLRP4 | DEL | -1.37943 | chr19 | 55836577 | 55881850 | DEL |
| 1166b_JAR | NLRP13 | DEL | -1.38042 | chr19 | 55895944 | 55932311 | DEL |
| 1166b_JAR | ZNF444 | DEL | -1.41034 | chr19 | 56141186 | 56160892 | DEL |
| 1166b_JAR | ZSCAN5B | DEL | -1.49232 | chr19 | 56189569 | 56197920 | DEL |
| 1166b_JAR | ZSCAN5C | DEL | -1.42576 | chr19 | 56202300 | 56209452 | DEL |
| 1166b_JAR | H1F0 | AMP | 1.17839 | chr22 | 37805106 | 37807435 | DUP |
| 1166b_JAR | ATF4 | AMP | 1.2253 | chr22 | 39520563 | 39522683 | DUP |
75 rows