sample gene amp_del log2_ratio chrom gene_start gene_end consequence 1166b_IRO F11R AMP 1.29283 chr1 160995210 161021348 DUP 1166b_IRO USF1 AMP 1.3008 chr1 161039250 161045977 DUP 1166b_IRO UFC1 AMP 1.29489 chr1 161153751 161158856 DUP 1166b_IRO USP21 AMP 1.25978 chr1 161159463 161165714 DUP 1166b_IRO CDKN2A DEL -1.52093 chr9 21968055 21974866 DEL 1166b_IRO CDKN2B DEL -1.45582 chr9 22002902 22009363 DEL