sample gene amp_del log2_ratio chrom gene_start gene_end consequence 1166b_J5V ABCG5 DEL -1.39875 chr2 43812471 43838819 DEL 1166b_J5V PRKCE DEL -2.15793 chr2 45651773 46187990 DEL 1166b_J5V MRPL53 AMP 1.15304 chr2 74471957 74473322 DUP 1166b_J5V GADD45B AMP 1.01109 chr19 2476126 2478259 DUP 1166b_J5V AMER1 DEL -2.90996 chrX 64185116 64205744 DEL 1166b_J5V ASB12 DEL -3.02385 chrX 64224195 64230631 DEL