sample gene amp_del log2_ratio chrom gene_start gene_end consequence 1173_T46 CPNE8 AMP 2.02539 chr12 38652184 38905631 DUP 1173_T46 KIF21A AMP 2.32808 chr12 39294420 39442986 DUP 1173_T46 ABCD2 AMP 2.12108 chr12 39550032 39619751 DUP 1173_T46 SLC2A13 AMP 2.33202 chr12 39755020 40105859 DUP 1173_T46 LRRK2 AMP 2.18528 chr12 40225073 40369281 DUP 1173_T46 MUC19 AMP 2.03832 chr12 40393394 40570760 DUP 1173_T46 CNTN1 AMP 2.18996 chr12 40692551 41072418 DUP 1173_T46 PDZRN4 AMP 2.01771 chr12 41188447 41574118 DUP 1173_T46 GXYLT1 AMP 2.07974 chr12 42081844 42144879 DUP 1173_T46 YAF2 AMP 2.02433 chr12 42159033 42238236 DUP 1173_T46 SLC38A2 AMP 2.11548 chr12 46358188 46372867 DUP 1173_T46 PFKM AMP 2.10062 chr12 48105922 48146104 DUP 1173_T46 ASB8 AMP 2.13271 chr12 48147787 48157595 DUP 1173_T46 C12orf68 AMP 2.22239 chr12 48183582 48185926 DUP 1173_T46 H1FNT AMP 2.22185 chr12 48328979 48330279 DUP 1173_T46 ZNF641 AMP 2.06578 chr12 48340126 48350771 DUP 1173_T46 KRT6A AMP 2.06946 chr12 52487173 52493257 DUP 1173_T46 KRT5 AMP 2.12571 chr12 52514574 52520687 DUP 1173_T46 KRT71 AMP 2.03465 chr12 52543908 52553147 DUP 1173_T46 CBX5 AMP 2.19484 chr12 54230939 54280102 DUP 1173_T46 HNRNPA1 AMP 2.29678 chr12 54280754 54285214 DUP 1173_T46 GPR84 AMP 2.10321 chr12 54362446 54364487 DUP 1173_T46 ZNF385A AMP 2.17959 chr12 54369139 54391298 DUP 1173_T46 ITGA5 AMP 2.31083 chr12 54395260 54419460 DUP 1173_T46 NCKAP1L AMP 2.08965 chr12 54497710 54543942 DUP 1173_T46 PDE1B AMP 2.08918 chr12 54549349 54579239 DUP 1173_T46 PPP1R1A AMP 2.15428 chr12 54579247 54588659 DUP 1173_T46 OR10P1 AMP 2.06905 chr12 55636859 55637854 DUP 1173_T46 METTL7B AMP 2.0684 chr12 55681545 55684611 DUP 1173_T46 ITGA7 AMP 2.08909 chr12 55684567 55707701 DUP 1173_T46 RP11-644F5.10 AMP 2.28089 chr12 55716035 55724703 DUP 1173_T46 BLOC1S1 AMP 2.27143 chr12 55716036 55719703 DUP 1173_T46 RDH5 AMP 2.29062 chr12 55720397 55724705 DUP 1173_T46 CD63 AMP 2.29359 chr12 55725481 55729707 DUP 1173_T46 GDF11 AMP 2.11588 chr12 55743279 55752352 DUP 1173_T46 RP11-762I7.5 AMP 2.10357 chr12 55757274 55827546 DUP 1173_T46 ORMDL2 AMP 2.20649 chr12 55817918 55821879 DUP 1173_T46 DNAJC14 AMP 2.1125 chr12 55820959 55830781 DUP 1173_T46 MMP19 AMP 2.51549 chr12 55836425 55842922 DUP 1173_T46 WIBG AMP 2.47552 chr12 55901412 55927913 DUP 1173_T46 DGKA AMP 2.07309 chr12 55930971 55954015 DUP 1173_T46 CDK2 AMP 2.14001 chr12 55966768 55972784 DUP 1173_T46 RPS26 AMP 2.47201 chr12 56041852 56044332 DUP 1173_T46 OS9 AMP 2.34999 chr12 57694120 57721555 DUP 1173_T46 AGAP2-AS1 AMP 2.65192 chr12 57726270 57728356 DUP 1173_T46 AGAP2 AMP 2.50161 chr12 57726551 57738246 DUP 1173_T46 TSPAN31 AMP 2.7132 chr12 57744880 57748232 DUP 1173_T46 CDK4 AMP 2.50339 chr12 57747726 57752521 DUP 1173_T46 MARCH9 AMP 2.60381 chr12 57755097 57760407 DUP 1173_T46 CYP27B1 AMP 2.43762 chr12 57762338 57767251 DUP 1173_T46 METTL1 AMP 2.41301 chr12 57768470 57772793 DUP 1173_T46 METTL21B AMP 2.48138 chr12 57772599 57782403 DUP 1173_T46 RP11-571M6.15 AMP 2.54915 chr12 57773027 57787046 DUP 1173_T46 TSFM AMP 2.51339 chr12 57782775 57796734 DUP 1173_T46 AVIL AMP 2.31415 chr12 57797881 57816471 DUP 1173_T46 CTDSP2 AMP 2.35661 chr12 57819926 57846739 DUP 1173_T46 XRCC6BP1 AMP 2.2258 chr12 57941576 57957269 DUP 1173_T46 LRIG3 AMP 2.3921 chr12 58872148 58920522 DUP 1173_T46 SLC16A7 AMP 2.31016 chr12 59689336 59782614 DUP 1173_T46 AVPR1A AMP 2.16369 chr12 63147196 63150942 DUP 1173_T46 RASSF3 AMP 2.12001 chr12 64610512 64697567 DUP 1173_T46 MSRB3 AMP 2.0987 chr12 65278642 65466906 DUP 1173_T46 HMGA2 AMP 2.21376 chr12 65824130 65966295 DUP 1173_T46 CAND1 AMP 2.43927 chr12 67269280 67319951 DUP 1173_T46 DYRK2 AMP 2.50414 chr12 67648720 67665406 DUP 1173_T46 IFNG AMP 2.44035 chr12 68154767 68159747 DUP 1173_T46 IL26 AMP 2.53967 chr12 68201350 68225821 DUP 1173_T46 IL22 AMP 2.46988 chr12 68248241 68253607 DUP 1173_T46 MDM1 AMP 2.76309 chr12 68294567 68332332 DUP 1173_T46 RAP1B AMP 2.53149 chr12 68610838 68660592 DUP 1173_T46 NUP107 AMP 2.60427 chr12 68686733 68743005 DUP 1173_T46 SLC35E3 AMP 2.79035 chr12 68746105 68768690 DUP 1173_T46 MDM2 AMP 2.54452 chr12 68808175 68845434 DUP 1173_T46 CPM AMP 2.38796 chr12 68851174 68933199 DUP 1173_T46 CPSF6 AMP 2.69925 chr12 69239536 69274358 DUP 1173_T46 LYZ AMP 2.36836 chr12 69348340 69354234 DUP 1173_T46 YEATS4 AMP 2.63009 chr12 69359702 69390796 DUP 1173_T46 FRS2 AMP 2.53614 chr12 69470348 69579779 DUP 1173_T46 CCT2 AMP 2.77126 chr12 69585333 69601570 DUP 1173_T46 LRRC10 AMP 2.46672 chr12 69608570 69611162 DUP 1173_T46 BEST3 AMP 2.42376 chr12 69653608 69699416 DUP 1173_T46 RAB3IP AMP 2.44083 chr12 69739389 69823204 DUP 1173_T46 MYRFL AMP 2.33168 chr12 69825303 69958723 DUP 1173_T46 CNOT2 AMP 2.55333 chr12 70242996 70354993 DUP 1173_T46 KCNMB4 AMP 2.70066 chr12 70366275 70434292 DUP 1173_T46 PTPRB AMP 2.40778 chr12 70516849 70637440 DUP 1173_T46 PTPRR AMP 2.4176 chr12 70638081 70920843 DUP 1173_T46 TSPAN8 AMP 2.23715 chr12 71125084 71441898 DUP 1173_T46 LGR5 AMP 2.04308 chr12 71439769 71586310 DUP 1173_T46 ZFC3H1 AMP 2.24878 chr12 71609471 71663969 DUP 1173_T46 THAP2 AMP 2.52254 chr12 71663008 71680639 DUP 1173_T46 RP11-293I14.2 AMP 2.15448 chr12 71674203 71698968 DUP 1173_T46 TMEM19 AMP 2.16883 chr12 71686086 71704056 DUP 1173_T46 RAB21 AMP 2.27517 chr12 71754873 71790919 DUP 1173_T46 TBC1D15 AMP 2.17591 chr12 71839717 71926849 DUP 1173_T46 TPH2 AMP 2.15903 chr12 71938845 72032441 DUP