sample gene amp_del log2_ratio chrom gene_start gene_end consequence 1173_RQT HIVEP3 AMP 1.98098 chr1 41506364 41918498 DUP 1173_RQT SP140 DEL -1.42887 chr2 230225730 230313212 DEL 1173_RQT FHIT AMP 1.84749 chr3 59751406 61251459 DUP 1173_RQT FAM19A1 AMP 1.50863 chr3 68004215 68545625 DUP 1173_RQT SCFD2 AMP 1.25264 chr4 52872981 53366075 DUP 1173_RQT PCDHA9 DEL -2.20058 chr5 140847771 140854159 DEL 1173_RQT NKAIN2 AMP 1.21696 chr6 123804140 124825657 DUP 1173_RQT DPP6 AMP 1.3083 chr7 154052679 154893451 DUP 1173_RQT NUTM2B DEL -1.78729 chr10 79703226 79712751 DEL 1173_RQT TCEB3C DEL -1.79438 chr18 47028201 47030078 DEL