sample gene amp_del log2_ratio chrom gene_start gene_end consequence 1173_QJL PDE12 AMP 1.429 chr3 57556276 57566844 DUP 1173_QJL ARF4 AMP 1.45161 chr3 57571362 57597408 DUP 1173_QJL ATXN7 AMP 1.39194 chr3 63864556 64003453 DUP 1173_QJL VGLL3 AMP 1.41049 chr3 86937968 86991107 DUP 1173_QJL CHMP2B AMP 1.5855 chr3 87227284 87255548 DUP 1173_QJL POU1F1 AMP 1.49992 chr3 87259740 87276504 DUP 1173_QJL KLLN DEL -1.83048 chr10 87859160 87863437 DEL 1173_QJL PTEN DEL -2.1001 chr10 87863112 87971930 DEL 1173_QJL RNLS DEL -1.96841 chr10 88284958 88583213 DEL 1173_QJL LIPJ DEL -2.21962 chr10 88586761 88606976 DEL 1173_QJL LIPF DEL -1.97419 chr10 88664440 88678811 DEL 1173_QJL LIPK DEL -2.08772 chr10 88724543 88752786 DEL 1173_QJL LIPN DEL -2.13734 chr10 88761405 88778242 DEL 1173_QJL LIPM DEL -2.11451 chr10 88802729 88820501 DEL 1173_QJL ANKRD22 DEL -2.22426 chr10 88822131 88851818 DEL 1173_QJL STAMBPL1 DEL -2.15035 chr10 88879733 88923487 DEL 1173_QJL ACTA2 DEL -2.04058 chr10 88935075 88991390 DEL 1173_QJL FAS DEL -2.10035 chr10 88990656 89015785 DEL 1173_QJL CH25H DEL -1.89271 chr10 89205936 89207314 DEL 1173_QJL LIPA DEL -2.02401 chr10 89213568 89252058 DEL 1173_QJL GOLGA8O DEL -1.35086 chr15 32445105 32455634 DEL