sample gene amp_del log2_ratio chrom gene_start gene_end consequence 1173_RPC CADM2 AMP 1.54891 chr3 85726481 86066783 DUP 1173_RPC VGLL3 AMP 2.27797 chr3 86937968 86991107 DUP 1173_RPC CHMP2B AMP 2.5357 chr3 87227284 87255548 DUP 1173_RPC POU1F1 AMP 2.36203 chr3 87259740 87276504 DUP 1173_RPC HTR1F AMP 2.11783 chr3 87990695 87993769 DUP 1173_RPC CGGBP1 AMP 2.31933 chr3 88052011 88057309 DUP 1173_RPC RP11-159G9.5 AMP 2.37822 chr3 88059273 88135498 DUP 1173_RPC ZNF654 AMP 2.30552 chr3 88139103 88144665 DUP 1173_RPC C3orf38 AMP 2.34343 chr3 88149742 88157968 DUP 1173_RPC EPHA3 AMP 2.10489 chr3 89107523 89482134 DUP