File Info
- Filename
- 1173_RGW.cnv.hmnz.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/01_altera_exact_survey_feb26/Harmonize_dspe1173__b003992--20260226-165137/1173_RGW/variants/cnv/1173_RGW.cnv.hmnz.tsv
- Size
- 6.4 KB
- Workflow Run
- Harmonize_dspe1173
- Published
- Feb 26, 2026 9:01 AM
Content
View in new tab| sample | gene | amp_del | log2_ratio | chrom | gene_start | gene_end | consequence |
| 1173_RGW | BTBD19 | AMP | 1.01203 | chr1 | 44808481 | 44814129 | DUP |
| 1173_RGW | JUN | AMP | 1.10663 | chr1 | 58780792 | 58784113 | DUP |
| 1173_RGW | GADD45A | AMP | 1.17943 | chr1 | 67685060 | 67688338 | DUP |
| 1173_RGW | TMEM167B | AMP | 1.01499 | chr1 | 109089802 | 109096934 | DUP |
| 1173_RGW | TXNIP | AMP | 1.22452 | chr1 | 145992435 | 145996601 | DUP |
| 1173_RGW | HIST2H2BE | AMP | 1.42879 | chr1 | 149884459 | 149886682 | DUP |
| 1173_RGW | HIST2H2AC | AMP | 1.70669 | chr1 | 149886974 | 149887411 | DUP |
| 1173_RGW | MCL1 | AMP | 1.39266 | chr1 | 150574555 | 150579590 | DUP |
| 1173_RGW | RGS2 | AMP | 1.19693 | chr1 | 192809040 | 192812273 | DUP |
| 1173_RGW | IRF2BP2 | AMP | 1.66084 | chr1 | 234604268 | 234609525 | DUP |
| 1173_RGW | RHOB | AMP | 1.29528 | chr2 | 20447073 | 20449439 | DUP |
| 1173_RGW | ZFP36L2 | AMP | 1.41733 | chr2 | 43222401 | 43226609 | DUP |
| 1173_RGW | PCBP1 | AMP | 1.65887 | chr2 | 70087452 | 70089200 | DUP |
| 1173_RGW | SH2D6 | AMP | 1.10093 | chr2 | 85434794 | 85437029 | DUP |
| 1173_RGW | HSPE1 | AMP | 1.13477 | chr2 | 197499993 | 197503457 | DUP |
| 1173_RGW | BHLHE40 | AMP | 1.50504 | chr3 | 4979115 | 4985323 | DUP |
| 1173_RGW | RAP2B | AMP | 1.25478 | chr3 | 153162239 | 153168476 | DUP |
| 1173_RGW | UBE2D3 | AMP | 1.43513 | chr4 | 102797356 | 102868896 | DUP |
| 1173_RGW | C4orf3 | AMP | 1.37957 | chr4 | 119297051 | 119304445 | DUP |
| 1173_RGW | ANXA2R | AMP | 1.17064 | chr5 | 43039232 | 43043170 | DUP |
| 1173_RGW | PELO | AMP | 1.41442 | chr5 | 52787939 | 52804046 | DUP |
| 1173_RGW | ARRDC3 | AMP | 1.31478 | chr5 | 91368723 | 91383359 | DUP |
| 1173_RGW | DUSP1 | AMP | 1.51135 | chr5 | 172768089 | 172771195 | DUP |
| 1173_RGW | HIST1H3B | AMP | 1.38859 | chr6 | 26031588 | 26032060 | DUP |
| 1173_RGW | HIST1H2AB | AMP | 1.53147 | chr6 | 26033091 | 26033568 | DUP |
| 1173_RGW | HIST1H2BB | AMP | 1.21736 | chr6 | 26043226 | 26043657 | DUP |
| 1173_RGW | HIST1H1C | AMP | 1.63117 | chr6 | 26055739 | 26056471 | DUP |
| 1173_RGW | HIST1H2BC | AMP | 1.59875 | chr6 | 26114872 | 26123910 | DUP |
| 1173_RGW | HIST1H2AC | AMP | 1.85069 | chr6 | 26124144 | 26139116 | DUP |
| 1173_RGW | HIST1H1E | AMP | 1.75569 | chr6 | 26156330 | 26157115 | DUP |
| 1173_RGW | HIST1H2BD | AMP | 1.4342 | chr6 | 26158145 | 26171349 | DUP |
| 1173_RGW | HIST1H3D | AMP | 1.75967 | chr6 | 26196839 | 26199293 | DUP |
| 1173_RGW | HIST1H2BF | AMP | 1.42983 | chr6 | 26199519 | 26200714 | DUP |
| 1173_RGW | HIST1H2AE | AMP | 1.50445 | chr6 | 26216936 | 26217483 | DUP |
| 1173_RGW | HIST1H1D | AMP | 1.34891 | chr6 | 26234211 | 26234988 | DUP |
| 1173_RGW | HIST1H2BI | AMP | 1.25789 | chr6 | 26272915 | 26273394 | DUP |
| 1173_RGW | HIST1H4H | AMP | 1.51931 | chr6 | 26281054 | 26285534 | DUP |
| 1173_RGW | HIST1H2BJ | AMP | 1.3609 | chr6 | 27125896 | 27132750 | DUP |
| 1173_RGW | HIST1H2AG | AMP | 1.36905 | chr6 | 27133052 | 27135291 | DUP |
| 1173_RGW | HIST1H2BK | AMP | 1.23587 | chr6 | 27138293 | 27146840 | DUP |
| 1173_RGW | HIST1H4I | AMP | 1.26118 | chr6 | 27139296 | 27140639 | DUP |
| 1173_RGW | HIST1H2AH | AMP | 1.4495 | chr6 | 27147081 | 27147538 | DUP |
| 1173_RGW | HIST1H2BL | AMP | 1.31602 | chr6 | 27807478 | 27807931 | DUP |
| 1173_RGW | HIST1H2BM | AMP | 1.25205 | chr6 | 27815043 | 27815489 | DUP |
| 1173_RGW | HIST1H2AK | AMP | 1.631 | chr6 | 27837879 | 27838339 | DUP |
| 1173_RGW | HIST1H2BN | AMP | 1.24117 | chr6 | 27838544 | 27852204 | DUP |
| 1173_RGW | HIST1H2AL | AMP | 1.21652 | chr6 | 27865255 | 27865828 | DUP |
| 1173_RGW | ZNRD1 | AMP | 1.22951 | chr6 | 30061253 | 30064909 | DUP |
| 1173_RGW | IER3 | AMP | 1.27612 | chr6 | 30743198 | 30744554 | DUP |
| 1173_RGW | HSPA1B | AMP | 1.41539 | chr6 | 31827734 | 31830254 | DUP |
| 1173_RGW | PNRC1 | AMP | 1.32397 | chr6 | 89080777 | 89085160 | DUP |
| 1173_RGW | CITED2 | AMP | 1.47279 | chr6 | 139372255 | 139374620 | DUP |
| 1173_RGW | C7orf55 | AMP | 1.09012 | chr7 | 139341131 | 139346319 | DUP |
| 1173_RGW | TRIB1 | AMP | 1.27926 | chr8 | 125430320 | 125438405 | DUP |
| 1173_RGW | KLF9 | AMP | 1.2287 | chr9 | 70384586 | 70414624 | DUP |
| 1173_RGW | ZFAND5 | AMP | 1.02593 | chr9 | 72351424 | 72365247 | DUP |
| 1173_RGW | KLF6 | AMP | 1.56749 | chr10 | 3775995 | 3785275 | DUP |
| 1173_RGW | DDIT4 | AMP | 1.37673 | chr10 | 72273919 | 72276036 | DUP |
| 1173_RGW | DNAJB12 | AMP | 1.04952 | chr10 | 72332829 | 72355149 | DUP |
| 1173_RGW | KLLN | AMP | 1.53551 | chr10 | 87859160 | 87863437 | DUP |
| 1173_RGW | FTH1 | AMP | 1.28647 | chr11 | 61964284 | 61967660 | DUP |
| 1173_RGW | SSSCA1 | AMP | 1.19483 | chr11 | 65570429 | 65571770 | DUP |
| 1173_RGW | FAM89B | AMP | 1.08552 | chr11 | 65572527 | 65574192 | DUP |
| 1173_RGW | POLD4 | AMP | 1.09478 | chr11 | 67351547 | 67353546 | DUP |
| 1173_RGW | CREBZF | AMP | 1.16307 | chr11 | 85659707 | 85665102 | DUP |
| 1173_RGW | C12orf57 | AMP | 1.26579 | chr12 | 6944022 | 6946002 | DUP |
| 1173_RGW | CDKN1B | AMP | 1.44048 | chr12 | 12717123 | 12722371 | DUP |
| 1173_RGW | RPL41 | AMP | 1.43197 | chr12 | 56116585 | 56117943 | DUP |
| 1173_RGW | C12orf61 | AMP | 1.31453 | chr12 | 62601750 | 62603434 | DUP |
| 1173_RGW | PHLDA1 | AMP | 1.28424 | chr12 | 76025446 | 76033932 | DUP |
| 1173_RGW | DUSP6 | AMP | 1.20775 | chr12 | 89347231 | 89353271 | DUP |
| 1173_RGW | BTG1 | AMP | 1.47526 | chr12 | 92142509 | 92145897 | DUP |
| 1173_RGW | LPAR6 | AMP | 1.14218 | chr13 | 48411044 | 48444704 | DUP |
| 1173_RGW | PPP1R3E | AMP | 1.04351 | chr14 | 23295642 | 23302848 | DUP |
| 1173_RGW | NFKBIA | AMP | 1.24397 | chr14 | 35401510 | 35404746 | DUP |
| 1173_RGW | ARF6 | AMP | 1.35335 | chr14 | 49893091 | 49894772 | DUP |
| 1173_RGW | ZFP36L1 | AMP | 1.41621 | chr14 | 68787661 | 68793240 | DUP |
| 1173_RGW | FOS | AMP | 1.40592 | chr14 | 75278773 | 75282230 | DUP |
| 1173_RGW | HDDC3 | AMP | 1.06553 | chr15 | 90930924 | 90932546 | DUP |
| 1173_RGW | TNFRSF12A | AMP | 1.14978 | chr16 | 3020311 | 3022383 | DUP |
| 1173_RGW | HCFC1R1 | AMP | 1.15572 | chr16 | 3022619 | 3024246 | DUP |
| 1173_RGW | MAZ | AMP | 1.14695 | chr16 | 29806595 | 29811164 | DUP |
| 1173_RGW | MT2A | AMP | 1.02721 | chr16 | 56608198 | 56609497 | DUP |
| 1173_RGW | MED11 | AMP | 1.13989 | chr17 | 4731433 | 4733610 | DUP |
| 1173_RGW | PFN1 | AMP | 1.14382 | chr17 | 4945651 | 4949014 | DUP |
| 1173_RGW | RNASEK | AMP | 1.09836 | chr17 | 7012416 | 7014532 | DUP |
| 1173_RGW | AC040977.1 | AMP | 1.1048 | chr17 | 7012608 | 7014436 | DUP |
| 1173_RGW | LSMD1 | AMP | 1.08063 | chr17 | 7856684 | 7857854 | DUP |
| 1173_RGW | RP11-599B13.6 | AMP | 1.01498 | chr17 | 8150815 | 8162975 | DUP |
| 1173_RGW | VAMP2 | AMP | 1.01606 | chr17 | 8159148 | 8162975 | DUP |
| 1173_RGW | C17orf59 | AMP | 1.05045 | chr17 | 8188333 | 8190246 | DUP |
| 1173_RGW | EVI2A | AMP | 1.15092 | chr17 | 31317559 | 31321749 | DUP |
| 1173_RGW | HEXIM1 | AMP | 1.35004 | chr17 | 45147316 | 45152101 | DUP |
| 1173_RGW | H3F3B | AMP | 1.13366 | chr17 | 75776433 | 75779779 | DUP |
| 1173_RGW | RP11-318A15.7 | AMP | 1.02243 | chr17 | 76732977 | 76738522 | DUP |
| 1173_RGW | SRSF2 | AMP | 1.08814 | chr17 | 76734114 | 76737333 | DUP |
| 1173_RGW | TGIF1 | AMP | 1.12954 | chr18 | 3451676 | 3458411 | DUP |
| 1173_RGW | PMAIP1 | AMP | 1.11674 | chr18 | 59899947 | 59904306 | DUP |
| 1173_RGW | ATP5D | AMP | 1.09812 | chr19 | 1241749 | 1244825 | DUP |
| 1173_RGW | MIDN | AMP | 1.05319 | chr19 | 1248552 | 1259140 | DUP |
| 1173_RGW | SWSAP1 | AMP | 1.18331 | chr19 | 11374684 | 11376951 | DUP |
| 1173_RGW | JUNB | AMP | 1.52858 | chr19 | 12791495 | 12793310 | DUP |
| 1173_RGW | IER2 | AMP | 1.34727 | chr19 | 13151974 | 13154908 | DUP |
| 1173_RGW | JUND | AMP | 1.30449 | chr19 | 18279752 | 18281622 | DUP |
| 1173_RGW | PSENEN | AMP | 1.20375 | chr19 | 35745113 | 35747010 | DUP |
| 1173_RGW | MED29 | AMP | 1.02119 | chr19 | 39391310 | 39400637 | DUP |
| 1173_RGW | ZFP36 | AMP | 1.37845 | chr19 | 39406812 | 39409412 | DUP |
| 1173_RGW | SERTAD1 | AMP | 1.0636 | chr19 | 40421591 | 40426025 | DUP |
| 1173_RGW | DBP | AMP | 1.01218 | chr19 | 48630029 | 48637438 | DUP |
| 1173_RGW | PPP1R15A | AMP | 1.13895 | chr19 | 48872391 | 48876057 | DUP |
| 1173_RGW | FTL | AMP | 1.07127 | chr19 | 48965300 | 48966878 | DUP |
| 1173_RGW | TSEN34 | AMP | 1.02235 | chr19 | 54190730 | 54193666 | DUP |
| 1173_RGW | UBE2M | AMP | 1.07149 | chr19 | 58555711 | 58558960 | DUP |
| 1173_RGW | CEBPB | AMP | 1.15614 | chr20 | 50190838 | 50192675 | DUP |
| 1173_RGW | ETS2 | AMP | 1.01483 | chr21 | 38805306 | 38824955 | DUP |
| 1173_RGW | ODF3B | AMP | 1.17733 | chr22 | 50530408 | 50532579 | DUP |
117 rows