File Info

Filename
659_yG.summary.json
Full Path
s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/01_altera_exact_survey_feb26/Harmonize_dspe659_take2__b003992--20260226-170305/659_yG/659_yG.summary.json
Size
4.4 KB
Published
Feb 26, 2026 10:12 AM
{
  "sequencing_library_id": "659_yG",
  "secondary_sequencing_library_id": null,
  "data_source": "altera_exact",
  "harmonized_software_version": "b00399295ad010468e0383b30ecf02fc958110a9",
  "software_version": null,
  "harmonized_s3_path": "s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/01_altera_exact_survey_feb26/Harmonize_dspe659_take2__b003992--20260226-170305",
  "s3_path": null,
  "s3_path_params": null,
  "altera_exact_report_details": {
    "original_api_version": "6.0.1",
    "original_pipeline_version": "NG2-LDT 1.3.2",
    "reportable": {
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        "variants": {
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          "ARID1A": [
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          ],
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          "CHEK1": [
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          "ERCC5": [
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          ],
          "FANCM": [
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          "FBXW7": [
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          "HDAC2": [
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          "MSH3": [
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          "MSH6": [
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          "POLD1": [
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          "PRKDC": [
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          "PTPRB": [
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          "PTPRT": [
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          "RAD50": [
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          "RNF43": [
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          "SOX9": [
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      "cnv": {
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        "variants": {}
      },
      "fusion": {
        "count": 1,
        "variants": {
          "ETV6/NTRK3": [
            "Fused Genes"
          ]
        }
      },
      "biomarkers": {
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          "category": "high"
        },
        "msi": {}
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    },
    "vus_count": 1584
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  "qc": {
    "calculated_sex": null,
    "calculated_sex_secondary": null,
    "tumor_normal_correlation": null,
    "tumor_contamination": null,
    "normal_contamination": null,
    "tso500_wetlab_pass": null,
    "tso500_seq_pass": null
  },
  "harmonized_input_file_status": {
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    "snv_somatic_phased": false,
    "snv_germline": false,
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    "sv": true,
    "fusion": true,
    "splice": true,
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    "hrd_scarHRD": false,
    "hrd_tih": false,
    "hla": false,
    "chip": false
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  "harmonized_summary_stats": {
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    "somatic_cnv_segment_num": null,
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    "germline_snv_num": null,
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    "germline_indel_hrr_num": null,
    "germline_cnv_hrr_num": null,
    "tumor_purity": null,
    "tumor_ploidy": null,
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    "scarHRD_status": null,
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    "TiH_HRD_status": null,
    "tso500_gis": null,
    "tso500_hrd_status": null,
    "msi_status": null,
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    "tmb_status": "high",
    "tmb_score": 38.22295495678043,
    "rna_fusion_total_num": 2,
    "rna_fusion_filtered_num": 2,
    "tso500_overlap_rna_fusion_total_num": 1,
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    "rna_fusion_filtered_and_actionable_num": null,
    "tso500_overlap_rna_fusion_filtered_num": null,
    "rna_exon_skipping_total_num": 0,
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    "tso500_overlap_somatic_snv_num": 43,
    "tso500_overlap_somatic_indel_num": 21,
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    "tso500_overlap_somatic_variant_phased_num": null,
    "tso500_overlap_somatic_cnv_num": 2,
    "tso500_overlap_somatic_cnv_del_num": 0,
    "tso500_overlap_somatic_cnv_amp_num": 2
  }
}