Tasks
Actions
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume e034db65-5773-4bc1-b1c7-1344372672d7 -name RF_Benchmark_GIAB_HG001_round3
Error Report
Error executing process > 'NFCORE_VARIANTBENCHMARKING:VARIANTBENCHMARKING:COMPARE_BENCHMARK_RESULTS:VCF_TO_CSV (rtgtools)'
Caused by:
Process `NFCORE_VARIANTBENCHMARKING:VARIANTBENCHMARKING:COMPARE_BENCHMARK_RESULTS:VCF_TO_CSV (rtgtools)` terminated with an error exit status (137)
Command executed:
vcf_to_csv.py \
rtgtools.FN.vcf \
rtgtools.FN.csv
cat <<-END_VERSIONS > versions.yml
"NFCORE_VARIANTBENCHMARKING:VARIANTBENCHMARKING:COMPARE_BENCHMARK_RESULTS:VCF_TO_CSV":
python: $(python --version | sed 's/Python //g')
END_VERSIONS
Command exit status:
137
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/e6f92da4ca9b7267db4cda1eecf572
Container:
community.wave.seqera.io/library/pip_pandas:40d2e76c16c136f0
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- e034db65-5773-4bc1-b1c7-1344372672d7
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- Deleted by @rsrivas on 2026-06-02 12:48 PM. List of old outputs
- Submitted By
- rsrivas (project:altera, pipeline:benchmark)
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $1.36
- Outputs
- Deleted
- Started
- Mar 02, 2026 9:26 AM
- Completed
- Mar 02, 2026 9:43 AM
- Duration
- 16m 47s
- Post-workflow Transfer
- 15s
- Exit Status
- 137
- Peak Tasks / CPU / Mem
- 26 / 144 / 864.0 GB