|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed)
|
8s |
5s |
- |
- |
5.4 MB |
100% |
4.6 MB |
4.6 MB |
0 bytes |
4.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null)
|
5s |
3s |
- |
- |
6.1 MB |
107% |
6.0 MB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null)
|
4s |
2s |
- |
- |
6.0 MB |
95% |
1.5 MB |
401.1 KB |
0 bytes |
408.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null)
|
6s |
4s |
- |
- |
6.1 MB |
102% |
1.6 MB |
442.7 KB |
0 bytes |
448.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null)
|
6s |
5s |
- |
- |
3.3 MB |
104% |
389.9 KB |
84.1 KB |
0 bytes |
88.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null)
|
6s |
4s |
- |
- |
6.3 MB |
117% |
1.4 MB |
422.1 KB |
0 bytes |
428.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null)
|
5s |
3s |
- |
- |
6.1 MB |
100% |
1.5 MB |
432.2 KB |
0 bytes |
440.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
6s |
5s |
0s |
0s |
0 bytes |
114% |
69.1 KB |
627 bytes |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (NA12878_rep1)
|
25s |
19s |
4s |
2s |
369.2 MB |
378% |
100.4 MB |
2.5 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr14_64122012-64122133)
|
5m 56s |
7s |
3m 44s |
2m 4s |
1.3 GB |
789% |
16.9 GB |
3.5 MB |
0 bytes |
189.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr1_69091-70008)
|
5m 22s |
8s |
3m 11s |
2m 2s |
919.1 MB |
787% |
15.3 GB |
3.4 MB |
0 bytes |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr19_47340800-47341813)
|
3m 5s |
8s |
53s |
2m 3s |
773.4 MB |
776% |
3.3 GB |
882.2 KB |
0 bytes |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr4_30730753-30730788)
|
5m 53s |
7s |
3m 42s |
2m 3s |
1.0 GB |
793% |
14.7 GB |
3.3 MB |
0 bytes |
179.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_rep1;chr8_93795409-93795507)
|
5m 41s |
8s |
3m 30s |
2m 2s |
1.0 GB |
789% |
15.0 GB |
3.6 MB |
0 bytes |
191.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (NA12878_rep1)
|
15s |
8s |
4s |
2s |
1.9 GB |
415% |
70.5 MB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (NA12878_rep1)
|
17s |
8s |
5s |
3s |
1.8 GB |
387% |
88.8 MB |
2.8 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (NA12878_rep1)
|
25s |
8s |
7s |
9s |
42.3 MB |
244% |
3.5 GB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (NA12878_rep1)
|
5s |
4s |
0s |
0s |
16.0 MB |
726% |
1.7 MB |
48.9 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (NA12878_rep1)
|
14s |
10s |
2s |
1s |
108.4 MB |
336% |
43.5 MB |
8.4 MB |
0 bytes |
8.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (NA12878_rep1;NA12878_rep1)
|
4m 18s |
3s |
2m 12s |
2m 3s |
480.4 MB |
99% |
26.1 GB |
20.3 MB |
25.6 GB |
20.3 MB |
1 |