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Filename
summary.txt
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s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/011f0e0855f95b27dc502a8449dcd7/summary.txt
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1.1 KB
Task
aggregation:AGGREGATE
Attempt

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=== AAVA Aggregation Summary ===
Text reports: 3
TSV tables: 3
JSON metrics: 2

--- all_concordance_concordance.txt ---
=== Concordance: 3 samples ===
Min Coverage: 10

HG001: s3://pltf-dev-user-ecanigur/aava-test/inputs/truth/HG001_truth.vcf.gz vs s3://pltf-dev-user-ecanigur/aava-test/inputs/samples/HG001.vcf.gz -> PASS
HG002: s3://pltf-dev-user-ecanigur/aava-test/inputs/truth/HG002_truth.vcf.gz vs s3://pltf-dev-user-ecanigur/aava-test/inputs/samples/HG002.vcf.gz -> PASS
HG003: s3://pltf-dev-user-ecanigur/aava-test/inputs/truth/HG003_truth.vcf.gz vs s3://pltf-dev-user-ecanigur/aava-test/inputs/samples/HG003.vcf.gz -> PASS

--- hba_concordance_concordance.txt ---
=== Concordance: 2 samples ===
Min Coverage: 30

HG001: s3://pltf-dev-user-ecanigur/aava-test/inputs/truth/HG001_truth.vcf.gz vs s3://pltf-dev-user-ecanigur/aava-test/inputs/samples/HG001.vcf.gz -> PASS
HG002: s3://pltf-dev-user-ecanigur/aava-test/inputs/truth/HG002_truth.vcf.gz vs s3://pltf-dev-user-ecanigur/aava-test/inputs/samples/HG002.vcf.gz -> PASS

--- hba_coverage_coverage.txt ---
=== Coverage Report: 2 samples ===
HG001: mean_cov=50x depth=30x
HG002: mean_cov=50x depth=30x