=== FASTQ QC Analysis for HCC1395N === Quality Distribution: #SentieonCommandLine: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r human_g1k_v37_decoy.fasta -t 8 -i HCC1395N_sorted.bam --algo QualDistribution HCC1395N_qd_metrics.txt QUALITY COUNT_OF_Q 2 3301 13 13790 27 11793 32 33496 38 212383 40 354902 Mean Quality by Cycle: #SentieonCommandLine: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r human_g1k_v37_decoy.fasta -t 8 -i HCC1395N_sorted.bam --algo MeanQualityByCycle HCC1395N_mq_metrics.txt CYCLE MEAN_QUALITY 1 34.294800 2 35.743800 3 36.137600 4 36.689200 5 36.643600 6 38.526400 7 38.413200 8 38.676800 9 38.917600 10 38.903600 11 38.445000 12 38.574200 13 38.626200 14 38.554000 15 38.826600 16 38.696800 17 38.596800 18 38.422800 19 38.631600 20 38.653200 21 38.742600 22 38.754000 23 38.877400 24 38.810800 25 38.785400 26 38.310800 27 38.180600 28 38.580200 29 38.211400 30 38.665000 31 38.769200 32 38.793800 33 38.405600 34 38.596400 35 38.673000 36 38.539000 37 38.382600 38 38.565000 39 38.037400 40 38.151000 41 38.463000 42 38.611000 43 38.588200 44 38.533600 45 38.394400 46 38.421200 47 38.654400 48 38.433200 49 38.412400 50 38.024800 51 38.353600 52 38.413000 53 38.319000 54 38.353800 55 38.516000 56 38.345000 57 38.264200 58 38.436800 59 38.196200 60 37.763600 61 38.312800 62 37.398800 63 38.114600 64 38.237800 65 38.281600 66 37.986400 67 37.915400 68 38.124800 69 37.969400 70 37.456600 71 37.245200 72 36.576800 73 37.307800 74 37.807800 75 37.930800 76 38.079600 77 37.777600 78 37.659000 79 37.934200 80 37.712000 81 37.711600 82 37.625200 83 37.846600 84 37.658200 85 37.221800 86 37.675400 87 37.280200 88 37.446200 89 37.830400 90 37.885600 91 37.886400 92 37.828000 93 37.224600 94 37.532200 95 37.285000 96 37.520400 97 37.487600 98 37.329600 99 37.436800 100 37.206600 101 37.328600 102 35.192000 103 36.134000 104 37.245200 105 37.823600 106 37.084800 107 36.843200 108 37.350800 109 37.283400 110 36.951600 111 36.928000 112 37.287000 113 37.730000 114 37.532400 115 37.468400 116 37.574200 117 37.447000 118 37.574000 119 37.424600 120 37.241600 121 37.575400 122 37.671000 123 37.359600 124 37.065600 125 36.974800 126 34.551200 Quality Check: PASS Completed: Tue Jan 13 08:47:15 UTC 2026