=== FASTQ QC Analysis for HCC1395T ===
Quality Distribution:
#SentieonCommandLine: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r human_g1k_v37_decoy.fasta -t 8 -i HCC1395T_sorted.bam --algo QualDistribution HCC1395T_qd_metrics.txt
QUALITY COUNT_OF_Q
2 3560
13 13451
27 11438
32 34437
38 217277
40 349660
Mean Quality by Cycle:
#SentieonCommandLine: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r human_g1k_v37_decoy.fasta -t 8 -i HCC1395T_sorted.bam --algo MeanQualityByCycle HCC1395T_mq_metrics.txt
CYCLE MEAN_QUALITY
1 35.078000
2 36.132400
3 35.707600
4 36.554200
5 36.400200
6 38.796400
7 38.807200
8 38.141600
9 38.422600
10 37.914200
11 38.699800
12 38.351400
13 38.746000
14 38.745800
15 38.692200
16 38.556800
17 38.634600
18 38.795200
19 38.878400
20 38.919400
21 38.698200
22 38.649600
23 38.457000
24 38.700000
25 38.731200
26 38.726000
27 38.752400
28 38.438200
29 38.722800
30 38.757000
31 38.448400
32 38.653400
33 38.673400
34 38.432800
35 38.208400
36 38.380600
37 38.462000
38 38.364800
39 38.699600
40 38.302800
41 38.350800
42 38.478600
43 38.538400
44 38.674800
45 38.546000
46 38.332000
47 37.844800
48 37.961800
49 38.313400
50 38.248000
51 38.185200
52 38.134000
53 38.443400
54 38.212800
55 37.832200
56 38.120800
57 38.190600
58 38.261800
59 38.266800
60 38.320800
61 38.374400
62 37.776600
63 37.787000
64 37.984400
65 37.867800
66 37.851200
67 38.163000
68 38.144200
69 38.156800
70 37.926600
71 38.190600
72 38.041800
73 38.183000
74 37.715000
75 38.064400
76 37.566800
77 37.988600
78 37.918200
79 37.402400
80 37.929200
81 38.026400
82 37.954800
83 37.595600
84 37.862600
85 37.523000
86 37.735800
87 37.812600
88 37.650800
89 37.629000
90 37.809600
91 37.770800
92 37.607600
93 37.652600
94 37.758800
95 37.633000
96 37.367200
97 37.463600
98 37.593000
99 37.253800
100 37.449600
101 37.445400
102 35.296600
103 36.280800
104 36.772800
105 37.098000
106 37.111800
107 37.675800
108 37.827800
109 37.534000
110 37.719600
111 37.612000
112 37.409600
113 37.153000
114 37.031200
115 36.689000
116 36.653800
117 36.747200
118 36.197800
119 36.644000
120 37.171000
121 37.155600
122 37.192800
123 36.896400
124 37.037400
125 36.939400
126 34.250000
Quality Check: PASS
Completed: Wed Jan 14 05:43:20 UTC 2026