[init] ff = 0.050
[init] alphas = [0.012, 0.05, 0.1]
[init] opening BAM HG01928_x_HG01952_FF_5.mix.bam
[init] opening reference Homo_sapiens_assembly38.fasta
[init] target list: 41869 sites
[chrom] starting chr1
[progress] 100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=100) elapsed=0.0s rate=35937.8/s
[progress] 200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=200) elapsed=0.0s rate=38877.5/s
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[progress] 1000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1000) elapsed=0.0s rate=49684.9/s
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[progress] 1400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1400) elapsed=0.0s rate=53349.1/s
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[progress] 1600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1600) elapsed=0.0s rate=53013.2/s
[progress] 1700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1700) elapsed=0.0s rate=53758.9/s
[progress] 1800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1800) elapsed=0.0s rate=54308.9/s
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[progress] 2200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2200) elapsed=0.0s rate=55559.0/s
[progress] 2300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2300) elapsed=0.0s rate=54292.8/s
[progress] 2400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2400) elapsed=0.0s rate=54590.8/s
[progress] 2500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2500) elapsed=0.0s rate=54826.9/s
[progress] 2600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2600) elapsed=0.0s rate=55384.4/s
[progress] 2700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2700) elapsed=0.0s rate=55779.2/s
[progress] 2800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2800) elapsed=0.0s rate=56101.2/s
[progress] 2900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2900) elapsed=0.1s rate=56538.6/s
[progress] 3000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3000) elapsed=0.1s rate=55743.4/s
[progress] 3100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3100) elapsed=0.1s rate=56121.7/s
[progress] 3200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3200) elapsed=0.1s rate=56247.0/s
[progress] 3300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3300) elapsed=0.1s rate=56597.0/s
[progress] 3400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3400) elapsed=0.1s rate=56811.7/s
[progress] 3500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3500) elapsed=0.1s rate=57082.2/s
[progress] 3600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3600) elapsed=0.1s rate=57331.0/s
[progress] 3700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3700) elapsed=0.1s rate=56286.3/s
[progress] 3800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3800) elapsed=0.1s rate=56499.4/s
[progress] 3900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3900) elapsed=0.1s rate=56689.6/s
[progress] 4000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4000) elapsed=0.1s rate=56917.3/s
[progress] 4100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4100) elapsed=0.1s rate=57102.1/s
[progress] 4200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4200) elapsed=0.1s rate=57343.6/s
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[progress] 4400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4400) elapsed=0.1s rate=56504.5/s
[progress] 4500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4500) elapsed=0.1s rate=56486.4/s
[chrom] chr1 done in 0.1s
[chrom] starting chr2
[progress] 4600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4600) elapsed=0.1s rate=56598.8/s
[progress] 4700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4700) elapsed=0.1s rate=56868.0/s
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[progress] 5300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5300) elapsed=0.1s rate=56986.1/s
[progress] 5400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5400) elapsed=0.1s rate=57140.4/s
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[progress] 5900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5900) elapsed=0.1s rate=57013.8/s
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[progress] 6300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6300) elapsed=0.1s rate=57524.9/s
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[progress] 6500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6500) elapsed=0.1s rate=57212.3/s
[progress] 6600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6600) elapsed=0.1s rate=57336.1/s
[progress] 6700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6700) elapsed=0.1s rate=57419.5/s
[progress] 6800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6800) elapsed=0.1s rate=57474.7/s
[progress] 6900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6900) elapsed=0.1s rate=57612.8/s
[progress] 7000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7000) elapsed=0.1s rate=57704.9/s
[progress] 7100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7100) elapsed=0.1s rate=57270.6/s
[chrom] chr2 done in 0.0s
[chrom] starting chr3
[progress] 7200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7200) elapsed=0.1s rate=57341.6/s
[progress] 7300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7300) elapsed=0.1s rate=57438.3/s
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[progress] 7600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7600) elapsed=0.1s rate=57844.4/s
[progress] 7700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7700) elapsed=0.1s rate=57977.1/s
[progress] 7800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7800) elapsed=0.1s rate=58108.3/s
[progress] 7900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7900) elapsed=0.1s rate=57789.9/s
[progress] 8000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8000) elapsed=0.1s rate=57917.9/s
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[progress] 8200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8200) elapsed=0.1s rate=58099.9/s
[progress] 8300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8300) elapsed=0.1s rate=58112.8/s
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[progress] 8500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8500) elapsed=0.1s rate=58289.0/s
[progress] 8600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8600) elapsed=0.1s rate=57902.2/s
[progress] 8700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8700) elapsed=0.1s rate=58015.7/s
[progress] 8800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8800) elapsed=0.2s rate=58148.4/s
[progress] 8900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8900) elapsed=0.2s rate=58231.2/s
[progress] 9000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9000) elapsed=0.2s rate=58264.3/s
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[progress] 9400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9400) elapsed=0.2s rate=58058.0/s
[chrom] chr3 done in 0.0s
[chrom] starting chr4
[progress] 9500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9500) elapsed=0.2s rate=58130.0/s
[progress] 9600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9600) elapsed=0.2s rate=58236.7/s
[progress] 9700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9700) elapsed=0.2s rate=58274.3/s
[progress] 9800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9800) elapsed=0.2s rate=58375.0/s
[progress] 9900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9900) elapsed=0.2s rate=58472.1/s
[progress] 10000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10000) elapsed=0.2s rate=58157.4/s
[progress] 10100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10100) elapsed=0.2s rate=58230.0/s
[progress] 10200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10200) elapsed=0.2s rate=58321.0/s
[progress] 10300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10300) elapsed=0.2s rate=58401.0/s
[progress] 10400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10400) elapsed=0.2s rate=58459.2/s
[progress] 10500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10500) elapsed=0.2s rate=58484.2/s
[progress] 10600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10600) elapsed=0.2s rate=58559.5/s
[progress] 10700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10700) elapsed=0.2s rate=58308.4/s
[progress] 10800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10800) elapsed=0.2s rate=58343.5/s
[chrom] chr4 done in 0.0s
[chrom] starting chr5
[progress] 10900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10900) elapsed=0.2s rate=58286.8/s
[progress] 11000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11000) elapsed=0.2s rate=58373.0/s
[progress] 11100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11100) elapsed=0.2s rate=58418.2/s
[progress] 11200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11200) elapsed=0.2s rate=58507.7/s
[progress] 11300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11300) elapsed=0.2s rate=58570.6/s
[progress] 11400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11400) elapsed=0.2s rate=58285.6/s
[progress] 11500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11500) elapsed=0.2s rate=58329.5/s
[progress] 11600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11600) elapsed=0.2s rate=58393.4/s
[progress] 11700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11700) elapsed=0.2s rate=58446.5/s
[progress] 11800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11800) elapsed=0.2s rate=58525.0/s
[progress] 11900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11900) elapsed=0.2s rate=58552.0/s
[progress] 12000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12000) elapsed=0.2s rate=58269.7/s
[progress] 12100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12100) elapsed=0.2s rate=58318.0/s
[progress] 12200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12200) elapsed=0.2s rate=58389.7/s
[progress] 12300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12300) elapsed=0.2s rate=58435.5/s
[progress] 12400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12400) elapsed=0.2s rate=58493.7/s
[progress] 12500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12500) elapsed=0.2s rate=58549.6/s
[chrom] chr5 done in 0.0s
[chrom] starting chr6
[progress] 12600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12600) elapsed=0.2s rate=58646.6/s
[progress] 12700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12700) elapsed=0.2s rate=58389.1/s
[progress] 12800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12800) elapsed=0.2s rate=58444.9/s
[progress] 12900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12900) elapsed=0.2s rate=58513.0/s
[progress] 13000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13000) elapsed=0.2s rate=58573.6/s
[progress] 13100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13100) elapsed=0.2s rate=58618.5/s
[progress] 13200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13200) elapsed=0.2s rate=58709.6/s
[progress] 13300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13300) elapsed=0.2s rate=58734.5/s
[progress] 13400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13400) elapsed=0.2s rate=58805.3/s
[progress] 13500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13500) elapsed=0.2s rate=58561.9/s
[progress] 13600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13600) elapsed=0.2s rate=58642.1/s
[progress] 13700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13700) elapsed=0.2s rate=58684.7/s
[progress] 13800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13800) elapsed=0.2s rate=58741.4/s
[progress] 13900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13900) elapsed=0.2s rate=58812.6/s
[progress] 14000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14000) elapsed=0.2s rate=58859.8/s
[progress] 14100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14100) elapsed=0.2s rate=58917.7/s
[progress] 14200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14200) elapsed=0.2s rate=58726.9/s
[progress] 14300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14300) elapsed=0.2s rate=58795.0/s
[progress] 14400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14400) elapsed=0.2s rate=58850.4/s
[progress] 14500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14500) elapsed=0.2s rate=58882.1/s
[progress] 14600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14600) elapsed=0.2s rate=58920.6/s
[progress] 14700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14700) elapsed=0.2s rate=58951.1/s
[progress] 14800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14800) elapsed=0.3s rate=59042.7/s
[progress] 14900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14900) elapsed=0.3s rate=58764.7/s
[chrom] chr6 done in 0.0s
[chrom] starting chr7
[progress] 15000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15000) elapsed=0.3s rate=58817.1/s
[progress] 15100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15100) elapsed=0.3s rate=58864.9/s
[progress] 15200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15200) elapsed=0.3s rate=58892.4/s
[progress] 15300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15300) elapsed=0.3s rate=58964.9/s
[progress] 15400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15400) elapsed=0.3s rate=59026.0/s
[progress] 15500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15500) elapsed=0.3s rate=59069.4/s
[progress] 15600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15600) elapsed=0.3s rate=58844.2/s
[progress] 15700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15700) elapsed=0.3s rate=58882.1/s
[progress] 15800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15800) elapsed=0.3s rate=58940.4/s
[progress] 15900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15900) elapsed=0.3s rate=58967.6/s
[progress] 16000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16000) elapsed=0.3s rate=59028.6/s
[progress] 16100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16100) elapsed=0.3s rate=59057.0/s
[progress] 16200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16200) elapsed=0.3s rate=58694.1/s
[progress] 16300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16300) elapsed=0.3s rate=58721.2/s
[progress] 16400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16400) elapsed=0.3s rate=58757.7/s
[progress] 16500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16500) elapsed=0.3s rate=58816.7/s
[progress] 16600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16600) elapsed=0.3s rate=58863.6/s
[progress] 16700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16700) elapsed=0.3s rate=58914.4/s
[progress] 16800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16800) elapsed=0.3s rate=58677.7/s
[progress] 16900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16900) elapsed=0.3s rate=58687.8/s
[progress] 17000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17000) elapsed=0.3s rate=58736.8/s
[progress] 17100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17100) elapsed=0.3s rate=58792.6/s
[progress] 17200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17200) elapsed=0.3s rate=58853.2/s
[chrom] chr7 done in 0.0s
[chrom] starting chr8
[progress] 17300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17300) elapsed=0.3s rate=58892.6/s
[progress] 17400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17400) elapsed=0.3s rate=58938.6/s
[progress] 17500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17500) elapsed=0.3s rate=58738.6/s
[progress] 17600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17600) elapsed=0.3s rate=58778.9/s
[progress] 17700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17700) elapsed=0.3s rate=58834.8/s
[progress] 17800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17800) elapsed=0.3s rate=58892.8/s
[progress] 17900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17900) elapsed=0.3s rate=58945.8/s
[progress] 18000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18000) elapsed=0.3s rate=58981.2/s
[progress] 18100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18100) elapsed=0.3s rate=58994.8/s
[progress] 18200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18200) elapsed=0.3s rate=59064.3/s
[progress] 18300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18300) elapsed=0.3s rate=58904.2/s
[progress] 18400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18400) elapsed=0.3s rate=58971.9/s
[progress] 18500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18500) elapsed=0.3s rate=59024.0/s
[progress] 18600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18600) elapsed=0.3s rate=59095.0/s
[progress] 18700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18700) elapsed=0.3s rate=59153.4/s
[chrom] chr8 done in 0.0s
[chrom] starting chr9
[progress] 18800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18800) elapsed=0.3s rate=59197.8/s
[progress] 18900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18900) elapsed=0.3s rate=59239.5/s
[progress] 19000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19000) elapsed=0.3s rate=59249.3/s
[progress] 19100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19100) elapsed=0.3s rate=59055.3/s
[progress] 19200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19200) elapsed=0.3s rate=59065.7/s
[progress] 19300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19300) elapsed=0.3s rate=59097.7/s
[progress] 19400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19400) elapsed=0.3s rate=59135.2/s
[progress] 19500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19500) elapsed=0.3s rate=59178.9/s
[progress] 19600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19600) elapsed=0.3s rate=59225.4/s
[progress] 19700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19700) elapsed=0.3s rate=59038.8/s
[progress] 19800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19800) elapsed=0.3s rate=59057.0/s
[progress] 19900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19900) elapsed=0.3s rate=59096.8/s
[progress] 20000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20000) elapsed=0.3s rate=59132.9/s
[progress] 20100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20100) elapsed=0.3s rate=59147.8/s
[progress] 20200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20200) elapsed=0.3s rate=59177.2/s
[progress] 20300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20300) elapsed=0.3s rate=59246.4/s
[chrom] chr9 done in 0.0s
[chrom] starting chr10
[progress] 20400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20400) elapsed=0.3s rate=59074.5/s
[progress] 20500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20500) elapsed=0.3s rate=59114.4/s
[progress] 20600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20600) elapsed=0.3s rate=59171.7/s
[progress] 20700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20700) elapsed=0.3s rate=59200.0/s
[progress] 20800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20800) elapsed=0.4s rate=59233.6/s
[progress] 20900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20900) elapsed=0.4s rate=59268.1/s
[progress] 21000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21000) elapsed=0.4s rate=59324.5/s
[progress] 21100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21100) elapsed=0.4s rate=59358.4/s
[progress] 21200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21200) elapsed=0.4s rate=59203.2/s
[progress] 21300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21300) elapsed=0.4s rate=59240.6/s
[progress] 21400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21400) elapsed=0.4s rate=59301.9/s
[progress] 21500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21500) elapsed=0.4s rate=59341.9/s
[progress] 21600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21600) elapsed=0.4s rate=59383.9/s
[progress] 21700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21700) elapsed=0.4s rate=59417.4/s
[progress] 21800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21800) elapsed=0.4s rate=59471.9/s
[chrom] chr10 done in 0.0s
[chrom] starting chr11
[progress] 21900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21900) elapsed=0.4s rate=59521.4/s
[progress] 22000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22000) elapsed=0.4s rate=59397.7/s
[progress] 22100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22100) elapsed=0.4s rate=59364.0/s
[progress] 22200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22200) elapsed=0.4s rate=59393.2/s
[progress] 22300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22300) elapsed=0.4s rate=59427.8/s
[progress] 22400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22400) elapsed=0.4s rate=59469.1/s
[progress] 22500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22500) elapsed=0.4s rate=59475.8/s
[progress] 22600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22600) elapsed=0.4s rate=59347.9/s
[progress] 22700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22700) elapsed=0.4s rate=59374.1/s
[progress] 22800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22800) elapsed=0.4s rate=59386.2/s
[progress] 22900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22900) elapsed=0.4s rate=59408.7/s
[progress] 23000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23000) elapsed=0.4s rate=59451.8/s
[progress] 23100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23100) elapsed=0.4s rate=59459.9/s
[progress] 23200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23200) elapsed=0.4s rate=59489.3/s
[progress] 23300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23300) elapsed=0.4s rate=59340.4/s
[progress] 23400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23400) elapsed=0.4s rate=59381.4/s
[progress] 23500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23500) elapsed=0.4s rate=59415.9/s
[progress] 23600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23600) elapsed=0.4s rate=59457.5/s
[progress] 23700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23700) elapsed=0.4s rate=59496.8/s
[progress] 23800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23800) elapsed=0.4s rate=59532.7/s
[progress] 23900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23900) elapsed=0.4s rate=59582.3/s
[progress] 24000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24000) elapsed=0.4s rate=59448.5/s
[progress] 24100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24100) elapsed=0.4s rate=59472.8/s
[progress] 24200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24200) elapsed=0.4s rate=59507.4/s
[progress] 24300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24300) elapsed=0.4s rate=59540.1/s
[progress] 24400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24400) elapsed=0.4s rate=59575.6/s
[progress] 24500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24500) elapsed=0.4s rate=59600.7/s
[progress] 24600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24600) elapsed=0.4s rate=59620.5/s
[progress] 24700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24700) elapsed=0.4s rate=59454.5/s
[chrom] chr11 done in 0.0s
[chrom] starting chr12
[progress] 24800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24800) elapsed=0.4s rate=59481.6/s
[progress] 24900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24900) elapsed=0.4s rate=59523.4/s
[progress] 25000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25000) elapsed=0.4s rate=59519.8/s
[progress] 25100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25100) elapsed=0.4s rate=59504.1/s
[progress] 25200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25200) elapsed=0.4s rate=59535.7/s
[progress] 25300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25300) elapsed=0.4s rate=59317.2/s
[progress] 25400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25400) elapsed=0.4s rate=59361.2/s
[progress] 25500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25500) elapsed=0.4s rate=59387.4/s
[progress] 25600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25600) elapsed=0.4s rate=59421.7/s
[progress] 25700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25700) elapsed=0.4s rate=59448.0/s
[progress] 25800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25800) elapsed=0.4s rate=59481.8/s
[progress] 25900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25900) elapsed=0.4s rate=59523.4/s
[progress] 26000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26000) elapsed=0.4s rate=59546.0/s
[progress] 26100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26100) elapsed=0.4s rate=59431.6/s
[progress] 26200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26200) elapsed=0.4s rate=59456.1/s
[progress] 26300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26300) elapsed=0.4s rate=59492.6/s
[progress] 26400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26400) elapsed=0.4s rate=59529.8/s
[progress] 26500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26500) elapsed=0.4s rate=59545.8/s
[progress] 26600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26600) elapsed=0.4s rate=59563.4/s
[progress] 26700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26700) elapsed=0.4s rate=59577.5/s
[chrom] chr12 done in 0.0s
[chrom] starting chr13
[progress] 26800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26800) elapsed=0.5s rate=59436.9/s
[progress] 26900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26900) elapsed=0.5s rate=59455.9/s
[progress] 27000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27000) elapsed=0.5s rate=59476.5/s
[progress] 27100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27100) elapsed=0.5s rate=59512.2/s
[progress] 27200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27200) elapsed=0.5s rate=59531.0/s
[progress] 27300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27300) elapsed=0.5s rate=59553.0/s
[chrom] chr13 done in 0.0s
[chrom] starting chr14
[progress] 27400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27400) elapsed=0.5s rate=59565.8/s
[progress] 27500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27500) elapsed=0.5s rate=59461.2/s
[progress] 27600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27600) elapsed=0.5s rate=59494.8/s
[progress] 27700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27700) elapsed=0.5s rate=59514.0/s
[progress] 27800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27800) elapsed=0.5s rate=59527.2/s
[progress] 27900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27900) elapsed=0.5s rate=59551.1/s
[progress] 28000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28000) elapsed=0.5s rate=59583.3/s
[progress] 28100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28100) elapsed=0.5s rate=59597.6/s
[progress] 28200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28200) elapsed=0.5s rate=59522.0/s
[progress] 28300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28300) elapsed=0.5s rate=59555.2/s
[progress] 28400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28400) elapsed=0.5s rate=59593.8/s
[chrom] chr14 done in 0.0s
[chrom] starting chr15
[progress] 28500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28500) elapsed=0.5s rate=59621.1/s
[progress] 28600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28600) elapsed=0.5s rate=59627.4/s
[progress] 28700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28700) elapsed=0.5s rate=59653.8/s
[progress] 28800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28800) elapsed=0.5s rate=59678.5/s
[progress] 28900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28900) elapsed=0.5s rate=59555.7/s
[progress] 29000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29000) elapsed=0.5s rate=59582.2/s
[progress] 29100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29100) elapsed=0.5s rate=59596.1/s
[progress] 29200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29200) elapsed=0.5s rate=59618.7/s
[progress] 29300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29300) elapsed=0.5s rate=59622.6/s
[progress] 29400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29400) elapsed=0.5s rate=59649.3/s
[chrom] chr15 done in 0.0s
[chrom] starting chr16
[progress] 29500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29500) elapsed=0.5s rate=59684.6/s
[progress] 29600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29600) elapsed=0.5s rate=59563.6/s
[progress] 29700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29700) elapsed=0.5s rate=59584.5/s
[progress] 29800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29800) elapsed=0.5s rate=59623.2/s
[progress] 29900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29900) elapsed=0.5s rate=59648.6/s
[progress] 30000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30000) elapsed=0.5s rate=59672.9/s
[progress] 30100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30100) elapsed=0.5s rate=59704.4/s
[progress] 30200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30200) elapsed=0.5s rate=59738.6/s
[progress] 30300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30300) elapsed=0.5s rate=59774.3/s
[progress] 30400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30400) elapsed=0.5s rate=59680.7/s
[progress] 30500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30500) elapsed=0.5s rate=59726.0/s
[progress] 30600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30600) elapsed=0.5s rate=59755.2/s
[progress] 30700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30700) elapsed=0.5s rate=59779.9/s
[progress] 30800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30800) elapsed=0.5s rate=59804.3/s
[progress] 30900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30900) elapsed=0.5s rate=59830.2/s
[progress] 31000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31000) elapsed=0.5s rate=59865.4/s
[progress] 31100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31100) elapsed=0.5s rate=59889.4/s
[progress] 31200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31200) elapsed=0.5s rate=59772.6/s
[progress] 31300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31300) elapsed=0.5s rate=59803.6/s
[progress] 31400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31400) elapsed=0.5s rate=59821.7/s
[chrom] chr16 done in 0.0s
[chrom] starting chr17
[progress] 31500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31500) elapsed=0.5s rate=59850.0/s
[progress] 31600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31600) elapsed=0.5s rate=59871.1/s
[progress] 31700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31700) elapsed=0.5s rate=59896.7/s
[progress] 31800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31800) elapsed=0.5s rate=59926.4/s
[progress] 31900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31900) elapsed=0.5s rate=59833.8/s
[progress] 32000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32000) elapsed=0.5s rate=59867.1/s
[progress] 32100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32100) elapsed=0.5s rate=59905.9/s
[progress] 32200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32200) elapsed=0.5s rate=59928.1/s
[progress] 32300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32300) elapsed=0.5s rate=59944.9/s
[progress] 32400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32400) elapsed=0.5s rate=59969.7/s
[progress] 32500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32500) elapsed=0.5s rate=59981.4/s
[progress] 32600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32600) elapsed=0.5s rate=60000.3/s
[progress] 32700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32700) elapsed=0.5s rate=59903.6/s
[progress] 32800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32800) elapsed=0.5s rate=59930.9/s
[progress] 32900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32900) elapsed=0.5s rate=59958.2/s
[progress] 33000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33000) elapsed=0.6s rate=59973.4/s
[progress] 33100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33100) elapsed=0.6s rate=60006.7/s
[progress] 33200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33200) elapsed=0.6s rate=60044.5/s
[progress] 33300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33300) elapsed=0.6s rate=60054.9/s
[progress] 33400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33400) elapsed=0.6s rate=59960.7/s
[progress] 33500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33500) elapsed=0.6s rate=59985.6/s
[progress] 33600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33600) elapsed=0.6s rate=60011.7/s
[progress] 33700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33700) elapsed=0.6s rate=60029.8/s
[progress] 33800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33800) elapsed=0.6s rate=60053.9/s
[progress] 33900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33900) elapsed=0.6s rate=60072.9/s
[progress] 34000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34000) elapsed=0.6s rate=60090.2/s
[progress] 34100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34100) elapsed=0.6s rate=60116.6/s
[progress] 34200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34200) elapsed=0.6s rate=60001.0/s
[progress] 34300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34300) elapsed=0.6s rate=60021.8/s
[progress] 34400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34400) elapsed=0.6s rate=60033.7/s
[chrom] chr17 done in 0.0s
[chrom] starting chr18
[progress] 34500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34500) elapsed=0.6s rate=60044.0/s
[progress] 34600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34600) elapsed=0.6s rate=60046.0/s
[progress] 34700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34700) elapsed=0.6s rate=60055.7/s
[progress] 34800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34800) elapsed=0.6s rate=60079.2/s
[progress] 34900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34900) elapsed=0.6s rate=59963.7/s
[progress] 35000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35000) elapsed=0.6s rate=59981.8/s
[chrom] chr18 done in 0.0s
[chrom] starting chr19
[progress] 35100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35100) elapsed=0.6s rate=59994.5/s
[progress] 35200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35200) elapsed=0.6s rate=60017.6/s
[progress] 35300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35300) elapsed=0.6s rate=60039.9/s
[progress] 35400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35400) elapsed=0.6s rate=60042.1/s
[progress] 35500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35500) elapsed=0.6s rate=59971.9/s
[progress] 35600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35600) elapsed=0.6s rate=59972.4/s
[progress] 35700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35700) elapsed=0.6s rate=59984.3/s
[progress] 35800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35800) elapsed=0.6s rate=59999.4/s
[progress] 35900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35900) elapsed=0.6s rate=60029.3/s
[progress] 36000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36000) elapsed=0.6s rate=60054.0/s
[progress] 36100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36100) elapsed=0.6s rate=60076.9/s
[progress] 36200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36200) elapsed=0.6s rate=59897.0/s
[progress] 36300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36300) elapsed=0.6s rate=59913.8/s
[progress] 36400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36400) elapsed=0.6s rate=59909.9/s
[progress] 36500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36500) elapsed=0.6s rate=59879.9/s
[progress] 36600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36600) elapsed=0.6s rate=59904.0/s
[progress] 36700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36700) elapsed=0.6s rate=59912.6/s
[progress] 36800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36800) elapsed=0.6s rate=59929.4/s
[progress] 36900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36900) elapsed=0.6s rate=59804.9/s
[progress] 37000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37000) elapsed=0.6s rate=59809.3/s
[progress] 37100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37100) elapsed=0.6s rate=59839.2/s
[progress] 37200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37200) elapsed=0.6s rate=59866.4/s
[progress] 37300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37300) elapsed=0.6s rate=59882.0/s
[progress] 37400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37400) elapsed=0.6s rate=59917.3/s
[progress] 37500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37500) elapsed=0.6s rate=59922.5/s
[progress] 37600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37600) elapsed=0.6s rate=59884.8/s
[progress] 37700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37700) elapsed=0.6s rate=59591.5/s
[progress] 37800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37800) elapsed=0.6s rate=59556.5/s
[progress] 37900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37900) elapsed=0.6s rate=59556.2/s
[progress] 38000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38000) elapsed=0.6s rate=59571.8/s
[progress] 38100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38100) elapsed=0.6s rate=59594.5/s
[progress] 38200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38200) elapsed=0.6s rate=59615.6/s
[progress] 38300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38300) elapsed=0.6s rate=59643.9/s
[chrom] chr19 done in 0.1s
[chrom] starting chr20
[progress] 38400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38400) elapsed=0.6s rate=59528.1/s
[progress] 38500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38500) elapsed=0.6s rate=59483.4/s
[progress] 38600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38600) elapsed=0.6s rate=59452.9/s
[progress] 38700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38700) elapsed=0.7s rate=59426.5/s
[progress] 38800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38800) elapsed=0.7s rate=59444.0/s
[progress] 38900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38900) elapsed=0.7s rate=59457.7/s
[progress] 39000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39000) elapsed=0.7s rate=59459.9/s
[progress] 39100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39100) elapsed=0.7s rate=59468.9/s
[progress] 39200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39200) elapsed=0.7s rate=59351.5/s
[progress] 39300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39300) elapsed=0.7s rate=59365.9/s
[progress] 39400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39400) elapsed=0.7s rate=59376.0/s
[chrom] chr20 done in 0.0s
[chrom] starting chr21
[progress] 39500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39500) elapsed=0.7s rate=59360.4/s
[progress] 39600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39600) elapsed=0.7s rate=59375.6/s
[progress] 39700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39700) elapsed=0.7s rate=59385.5/s
[progress] 39800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39800) elapsed=0.7s rate=59393.6/s
[chrom] chr21 done in 0.0s
[chrom] starting chr22
[progress] 39900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39900) elapsed=0.7s rate=59417.6/s
[progress] 40000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40000) elapsed=0.7s rate=59333.9/s
[progress] 40100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40100) elapsed=0.7s rate=59348.4/s
[progress] 40200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40200) elapsed=0.7s rate=59357.4/s
[progress] 40300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40300) elapsed=0.7s rate=59374.8/s
[progress] 40400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40400) elapsed=0.7s rate=59387.9/s
[progress] 40500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40500) elapsed=0.7s rate=59415.4/s
[progress] 40600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40600) elapsed=0.7s rate=59432.8/s
[progress] 40700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40700) elapsed=0.7s rate=59386.9/s
[progress] 40800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40800) elapsed=0.7s rate=59381.8/s
[progress] 40900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40900) elapsed=0.7s rate=59359.7/s
[progress] 41000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41000) elapsed=0.7s rate=59377.3/s
[progress] 41100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41100) elapsed=0.7s rate=59373.3/s
[chrom] chr22 done in 0.0s
[chrom] starting chrX
[progress] 41200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41200) elapsed=0.7s rate=59387.6/s
[progress] 41300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41300) elapsed=0.7s rate=59383.5/s
[progress] 41400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41400) elapsed=0.7s rate=59378.5/s
[progress] 41500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41500) elapsed=0.7s rate=59370.3/s
[progress] 41600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41600) elapsed=0.7s rate=59378.7/s
[progress] 41700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41700) elapsed=0.7s rate=59380.4/s
[progress] 41800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41800) elapsed=0.7s rate=59399.4/s
[chrom] chrX done in 0.0s
[chrom] starting chrY
[chrom] chrY done in 0.0s
[done] 41870 variants in 0.7s (ok=0 no_reads=0 ref_mismatch=0 other=41870)