[init] ff = 0.050
[init] alphas = [0.012, 0.05, 0.1]
[init] opening BAM HG03540_x_HG03579_FF_5.mix.bam
[init] opening reference Homo_sapiens_assembly38.fasta
[init] target list: 43524 sites
[chrom] starting chr1
[progress] 100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=100) elapsed=0.0s rate=39831.9/s
[progress] 200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=200) elapsed=0.0s rate=41884.4/s
[progress] 300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=300) elapsed=0.0s rate=47778.4/s
[progress] 400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=400) elapsed=0.0s rate=52226.4/s
[progress] 500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=500) elapsed=0.0s rate=47989.7/s
[progress] 600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=600) elapsed=0.0s rate=49698.5/s
[progress] 700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=700) elapsed=0.0s rate=51260.8/s
[progress] 800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=800) elapsed=0.0s rate=53203.6/s
[progress] 900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=900) elapsed=0.0s rate=50685.1/s
[progress] 1000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1000) elapsed=0.0s rate=52071.5/s
[progress] 1100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1100) elapsed=0.0s rate=52982.7/s
[progress] 1200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1200) elapsed=0.0s rate=54068.9/s
[progress] 1300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1300) elapsed=0.0s rate=55151.9/s
[progress] 1400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1400) elapsed=0.0s rate=55932.6/s
[progress] 1500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1500) elapsed=0.0s rate=56665.5/s
[progress] 1600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1600) elapsed=0.0s rate=57109.1/s
[progress] 1700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1700) elapsed=0.0s rate=55916.6/s
[progress] 1800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1800) elapsed=0.0s rate=56541.8/s
[progress] 1900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=1900) elapsed=0.0s rate=57138.2/s
[progress] 2000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2000) elapsed=0.0s rate=57151.3/s
[progress] 2100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2100) elapsed=0.0s rate=57551.6/s
[progress] 2200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2200) elapsed=0.0s rate=57796.3/s
[progress] 2300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2300) elapsed=0.0s rate=58161.2/s
[progress] 2400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2400) elapsed=0.0s rate=56704.7/s
[progress] 2500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2500) elapsed=0.0s rate=57079.6/s
[progress] 2600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2600) elapsed=0.0s rate=56648.3/s
[progress] 2700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2700) elapsed=0.0s rate=56997.0/s
[progress] 2800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2800) elapsed=0.0s rate=57307.9/s
[progress] 2900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=2900) elapsed=0.1s rate=57357.3/s
[progress] 3000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3000) elapsed=0.1s rate=57646.3/s
[progress] 3100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3100) elapsed=0.1s rate=56725.3/s
[progress] 3200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3200) elapsed=0.1s rate=56968.0/s
[progress] 3300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3300) elapsed=0.1s rate=57305.2/s
[progress] 3400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3400) elapsed=0.1s rate=57481.0/s
[progress] 3500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3500) elapsed=0.1s rate=57735.3/s
[progress] 3600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3600) elapsed=0.1s rate=57881.5/s
[progress] 3700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3700) elapsed=0.1s rate=57998.0/s
[progress] 3800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3800) elapsed=0.1s rate=57087.8/s
[progress] 3900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=3900) elapsed=0.1s rate=57068.3/s
[progress] 4000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4000) elapsed=0.1s rate=57315.1/s
[progress] 4100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4100) elapsed=0.1s rate=57406.9/s
[progress] 4200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4200) elapsed=0.1s rate=57548.6/s
[progress] 4300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4300) elapsed=0.1s rate=57757.2/s
[progress] 4400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4400) elapsed=0.1s rate=56915.2/s
[progress] 4500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4500) elapsed=0.1s rate=57123.7/s
[progress] 4600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4600) elapsed=0.1s rate=57117.6/s
[chrom] chr1 done in 0.1s
[chrom] starting chr2
[progress] 4700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4700) elapsed=0.1s rate=57379.3/s
[progress] 4800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4800) elapsed=0.1s rate=57565.1/s
[progress] 4900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=4900) elapsed=0.1s rate=57721.7/s
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[progress] 5100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5100) elapsed=0.1s rate=57303.5/s
[progress] 5200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5200) elapsed=0.1s rate=57446.7/s
[progress] 5300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5300) elapsed=0.1s rate=57601.2/s
[progress] 5400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5400) elapsed=0.1s rate=57725.5/s
[progress] 5500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5500) elapsed=0.1s rate=57925.2/s
[progress] 5600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5600) elapsed=0.1s rate=58088.5/s
[progress] 5700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5700) elapsed=0.1s rate=58164.4/s
[progress] 5800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5800) elapsed=0.1s rate=57635.9/s
[progress] 5900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=5900) elapsed=0.1s rate=57758.6/s
[progress] 6000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6000) elapsed=0.1s rate=57786.2/s
[progress] 6100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6100) elapsed=0.1s rate=57623.3/s
[progress] 6200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6200) elapsed=0.1s rate=57689.1/s
[progress] 6300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6300) elapsed=0.1s rate=57885.5/s
[progress] 6400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6400) elapsed=0.1s rate=57987.6/s
[progress] 6500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6500) elapsed=0.1s rate=57459.5/s
[progress] 6600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6600) elapsed=0.1s rate=57610.5/s
[progress] 6700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6700) elapsed=0.1s rate=57779.7/s
[progress] 6800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6800) elapsed=0.1s rate=57938.7/s
[progress] 6900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=6900) elapsed=0.1s rate=58026.0/s
[progress] 7000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7000) elapsed=0.1s rate=58097.1/s
[progress] 7100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7100) elapsed=0.1s rate=58157.0/s
[progress] 7200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7200) elapsed=0.1s rate=57638.3/s
[chrom] chr2 done in 0.0s
[chrom] starting chr3
[progress] 7300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7300) elapsed=0.1s rate=57720.7/s
[progress] 7400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7400) elapsed=0.1s rate=57877.7/s
[progress] 7500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7500) elapsed=0.1s rate=58000.2/s
[progress] 7600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7600) elapsed=0.1s rate=58102.5/s
[progress] 7700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7700) elapsed=0.1s rate=58193.8/s
[progress] 7800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7800) elapsed=0.1s rate=58298.1/s
[progress] 7900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=7900) elapsed=0.1s rate=57941.1/s
[progress] 8000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8000) elapsed=0.1s rate=58065.2/s
[progress] 8100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8100) elapsed=0.1s rate=58205.6/s
[progress] 8200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8200) elapsed=0.1s rate=58301.4/s
[progress] 8300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8300) elapsed=0.1s rate=58420.9/s
[progress] 8400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8400) elapsed=0.1s rate=58512.9/s
[progress] 8500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8500) elapsed=0.1s rate=58571.8/s
[progress] 8600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8600) elapsed=0.1s rate=58156.7/s
[progress] 8700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8700) elapsed=0.1s rate=58132.3/s
[progress] 8800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8800) elapsed=0.2s rate=58210.1/s
[progress] 8900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=8900) elapsed=0.2s rate=58273.8/s
[progress] 9000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9000) elapsed=0.2s rate=58342.8/s
[progress] 9100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9100) elapsed=0.2s rate=58435.7/s
[progress] 9200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9200) elapsed=0.2s rate=58483.8/s
[progress] 9300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9300) elapsed=0.2s rate=58120.3/s
[progress] 9400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9400) elapsed=0.2s rate=58158.3/s
[progress] 9500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9500) elapsed=0.2s rate=58176.5/s
[chrom] chr3 done in 0.0s
[chrom] starting chr4
[progress] 9600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9600) elapsed=0.2s rate=58255.3/s
[progress] 9700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9700) elapsed=0.2s rate=58344.9/s
[progress] 9800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9800) elapsed=0.2s rate=58451.5/s
[progress] 9900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=9900) elapsed=0.2s rate=58122.7/s
[progress] 10000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10000) elapsed=0.2s rate=58210.7/s
[progress] 10100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10100) elapsed=0.2s rate=58313.8/s
[progress] 10200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10200) elapsed=0.2s rate=58396.2/s
[progress] 10300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10300) elapsed=0.2s rate=58478.3/s
[progress] 10400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10400) elapsed=0.2s rate=58545.4/s
[progress] 10500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10500) elapsed=0.2s rate=58657.1/s
[progress] 10600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10600) elapsed=0.2s rate=58636.5/s
[progress] 10700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10700) elapsed=0.2s rate=58303.5/s
[progress] 10800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10800) elapsed=0.2s rate=58393.6/s
[progress] 10900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=10900) elapsed=0.2s rate=58489.1/s
[progress] 11000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11000) elapsed=0.2s rate=58546.5/s
[chrom] chr4 done in 0.0s
[chrom] starting chr5
[progress] 11100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11100) elapsed=0.2s rate=58600.7/s
[progress] 11200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11200) elapsed=0.2s rate=58666.5/s
[progress] 11300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11300) elapsed=0.2s rate=58708.0/s
[progress] 11400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11400) elapsed=0.2s rate=58449.5/s
[progress] 11500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11500) elapsed=0.2s rate=58532.0/s
[progress] 11600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11600) elapsed=0.2s rate=58610.4/s
[progress] 11700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11700) elapsed=0.2s rate=58660.7/s
[progress] 11800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11800) elapsed=0.2s rate=58677.5/s
[progress] 11900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=11900) elapsed=0.2s rate=58743.7/s
[progress] 12000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12000) elapsed=0.2s rate=58487.8/s
[progress] 12100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12100) elapsed=0.2s rate=58554.9/s
[progress] 12200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12200) elapsed=0.2s rate=58577.6/s
[progress] 12300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12300) elapsed=0.2s rate=58624.7/s
[progress] 12400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12400) elapsed=0.2s rate=58698.2/s
[progress] 12500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12500) elapsed=0.2s rate=58764.2/s
[progress] 12600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12600) elapsed=0.2s rate=58836.9/s
[progress] 12700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12700) elapsed=0.2s rate=58920.0/s
[progress] 12800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12800) elapsed=0.2s rate=58621.6/s
[chrom] chr5 done in 0.0s
[chrom] starting chr6
[progress] 12900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=12900) elapsed=0.2s rate=58694.7/s
[progress] 13000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13000) elapsed=0.2s rate=58757.8/s
[progress] 13100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13100) elapsed=0.2s rate=58826.7/s
[progress] 13200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13200) elapsed=0.2s rate=58871.9/s
[progress] 13300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13300) elapsed=0.2s rate=58890.4/s
[progress] 13400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13400) elapsed=0.2s rate=58941.8/s
[progress] 13500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13500) elapsed=0.2s rate=58701.4/s
[progress] 13600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13600) elapsed=0.2s rate=58757.7/s
[progress] 13700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13700) elapsed=0.2s rate=58754.0/s
[progress] 13800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13800) elapsed=0.2s rate=58804.0/s
[progress] 13900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=13900) elapsed=0.2s rate=58866.0/s
[progress] 14000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14000) elapsed=0.2s rate=58915.9/s
[progress] 14100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14100) elapsed=0.2s rate=58709.3/s
[progress] 14200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14200) elapsed=0.2s rate=58727.9/s
[progress] 14300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14300) elapsed=0.2s rate=58771.8/s
[progress] 14400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14400) elapsed=0.2s rate=58826.7/s
[progress] 14500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14500) elapsed=0.2s rate=58879.4/s
[progress] 14600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14600) elapsed=0.2s rate=58922.3/s
[progress] 14700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14700) elapsed=0.2s rate=58979.7/s
[progress] 14800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14800) elapsed=0.3s rate=58724.8/s
[progress] 14900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=14900) elapsed=0.3s rate=58767.3/s
[progress] 15000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15000) elapsed=0.3s rate=58819.4/s
[chrom] chr6 done in 0.0s
[chrom] starting chr7
[progress] 15100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15100) elapsed=0.3s rate=58867.5/s
[progress] 15200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15200) elapsed=0.3s rate=58927.9/s
[progress] 15300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15300) elapsed=0.3s rate=58979.6/s
[progress] 15400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15400) elapsed=0.3s rate=59023.7/s
[progress] 15500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15500) elapsed=0.3s rate=58800.8/s
[progress] 15600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15600) elapsed=0.3s rate=58838.1/s
[progress] 15700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15700) elapsed=0.3s rate=58876.8/s
[progress] 15800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15800) elapsed=0.3s rate=58907.4/s
[progress] 15900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=15900) elapsed=0.3s rate=58946.7/s
[progress] 16000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16000) elapsed=0.3s rate=58990.5/s
[progress] 16100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16100) elapsed=0.3s rate=58809.0/s
[progress] 16200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16200) elapsed=0.3s rate=58736.5/s
[progress] 16300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16300) elapsed=0.3s rate=58677.5/s
[progress] 16400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16400) elapsed=0.3s rate=58741.8/s
[progress] 16500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16500) elapsed=0.3s rate=58786.3/s
[progress] 16600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16600) elapsed=0.3s rate=58612.5/s
[progress] 16700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16700) elapsed=0.3s rate=58664.8/s
[progress] 16800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16800) elapsed=0.3s rate=58689.3/s
[progress] 16900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=16900) elapsed=0.3s rate=58728.5/s
[progress] 17000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17000) elapsed=0.3s rate=58741.6/s
[progress] 17100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17100) elapsed=0.3s rate=58795.5/s
[progress] 17200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17200) elapsed=0.3s rate=58839.0/s
[chrom] chr7 done in 0.0s
[chrom] starting chr8
[progress] 17300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17300) elapsed=0.3s rate=58689.1/s
[progress] 17400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17400) elapsed=0.3s rate=58734.7/s
[progress] 17500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17500) elapsed=0.3s rate=58764.7/s
[progress] 17600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17600) elapsed=0.3s rate=58773.2/s
[progress] 17700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17700) elapsed=0.3s rate=58821.9/s
[progress] 17800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17800) elapsed=0.3s rate=58880.9/s
[progress] 17900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=17900) elapsed=0.3s rate=58929.8/s
[progress] 18000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18000) elapsed=0.3s rate=58761.6/s
[progress] 18100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18100) elapsed=0.3s rate=58784.1/s
[progress] 18200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18200) elapsed=0.3s rate=58801.1/s
[progress] 18300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18300) elapsed=0.3s rate=58821.1/s
[progress] 18400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18400) elapsed=0.3s rate=58876.7/s
[progress] 18500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18500) elapsed=0.3s rate=58928.0/s
[progress] 18600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18600) elapsed=0.3s rate=58971.5/s
[chrom] chr8 done in 0.0s
[chrom] starting chr9
[progress] 18700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18700) elapsed=0.3s rate=58828.9/s
[progress] 18800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18800) elapsed=0.3s rate=58878.6/s
[progress] 18900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=18900) elapsed=0.3s rate=58912.1/s
[progress] 19000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19000) elapsed=0.3s rate=58982.1/s
[progress] 19100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19100) elapsed=0.3s rate=59014.0/s
[progress] 19200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19200) elapsed=0.3s rate=59020.5/s
[progress] 19300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19300) elapsed=0.3s rate=59072.5/s
[progress] 19400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19400) elapsed=0.3s rate=58901.2/s
[progress] 19500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19500) elapsed=0.3s rate=58935.6/s
[progress] 19600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19600) elapsed=0.3s rate=58958.7/s
[progress] 19700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19700) elapsed=0.3s rate=59003.5/s
[progress] 19800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19800) elapsed=0.3s rate=59022.5/s
[progress] 19900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=19900) elapsed=0.3s rate=59075.9/s
[progress] 20000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20000) elapsed=0.3s rate=59103.5/s
[progress] 20100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20100) elapsed=0.3s rate=58957.9/s
[progress] 20200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20200) elapsed=0.3s rate=58991.5/s
[progress] 20300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20300) elapsed=0.3s rate=59036.3/s
[chrom] chr9 done in 0.0s
[chrom] starting chr10
[progress] 20400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20400) elapsed=0.3s rate=59056.3/s
[progress] 20500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20500) elapsed=0.3s rate=59101.1/s
[progress] 20600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20600) elapsed=0.3s rate=59131.7/s
[progress] 20700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20700) elapsed=0.3s rate=59153.8/s
[progress] 20800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20800) elapsed=0.4s rate=59016.6/s
[progress] 20900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=20900) elapsed=0.4s rate=59035.9/s
[progress] 21000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21000) elapsed=0.4s rate=59054.7/s
[progress] 21100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21100) elapsed=0.4s rate=59113.7/s
[progress] 21200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21200) elapsed=0.4s rate=59124.0/s
[progress] 21300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21300) elapsed=0.4s rate=59131.0/s
[progress] 21400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21400) elapsed=0.4s rate=59141.7/s
[progress] 21500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21500) elapsed=0.4s rate=59171.8/s
[progress] 21600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21600) elapsed=0.4s rate=58931.7/s
[progress] 21700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21700) elapsed=0.4s rate=58942.1/s
[progress] 21800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21800) elapsed=0.4s rate=58916.2/s
[chrom] chr10 done in 0.0s
[chrom] starting chr11
[progress] 21900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=21900) elapsed=0.4s rate=58896.3/s
[progress] 22000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22000) elapsed=0.4s rate=58858.6/s
[progress] 22100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22100) elapsed=0.4s rate=58833.1/s
[progress] 22200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22200) elapsed=0.4s rate=58851.6/s
[progress] 22300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22300) elapsed=0.4s rate=58630.6/s
[progress] 22400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22400) elapsed=0.4s rate=58622.0/s
[progress] 22500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22500) elapsed=0.4s rate=58599.9/s
[progress] 22600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22600) elapsed=0.4s rate=58604.9/s
[progress] 22700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22700) elapsed=0.4s rate=58607.1/s
[progress] 22800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22800) elapsed=0.4s rate=58615.2/s
[progress] 22900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=22900) elapsed=0.4s rate=58618.2/s
[progress] 23000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23000) elapsed=0.4s rate=58613.6/s
[progress] 23100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23100) elapsed=0.4s rate=58426.3/s
[progress] 23200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23200) elapsed=0.4s rate=58406.6/s
[progress] 23300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23300) elapsed=0.4s rate=58380.5/s
[progress] 23400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23400) elapsed=0.4s rate=58381.1/s
[progress] 23500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23500) elapsed=0.4s rate=58359.4/s
[progress] 23600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23600) elapsed=0.4s rate=58372.1/s
[progress] 23700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23700) elapsed=0.4s rate=58382.5/s
[progress] 23800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23800) elapsed=0.4s rate=58159.2/s
[progress] 23900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=23900) elapsed=0.4s rate=58152.4/s
[progress] 24000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24000) elapsed=0.4s rate=58143.2/s
[progress] 24100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24100) elapsed=0.4s rate=58129.0/s
[progress] 24200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24200) elapsed=0.4s rate=58117.4/s
[progress] 24300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24300) elapsed=0.4s rate=58129.0/s
[progress] 24400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24400) elapsed=0.4s rate=58107.9/s
[progress] 24500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24500) elapsed=0.4s rate=57914.8/s
[progress] 24600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24600) elapsed=0.4s rate=57911.9/s
[progress] 24700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24700) elapsed=0.4s rate=57910.8/s
[progress] 24800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24800) elapsed=0.4s rate=57913.4/s
[progress] 24900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=24900) elapsed=0.4s rate=57862.4/s
[chrom] chr11 done in 0.1s
[chrom] starting chr12
[progress] 25000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25000) elapsed=0.4s rate=57855.2/s
[progress] 25100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25100) elapsed=0.4s rate=57834.0/s
[progress] 25200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25200) elapsed=0.4s rate=57578.7/s
[progress] 25300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25300) elapsed=0.4s rate=57591.3/s
[progress] 25400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25400) elapsed=0.4s rate=57568.1/s
[progress] 25500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25500) elapsed=0.4s rate=57562.1/s
[progress] 25600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25600) elapsed=0.4s rate=57569.8/s
[progress] 25700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25700) elapsed=0.4s rate=57561.1/s
[progress] 25800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25800) elapsed=0.4s rate=57404.0/s
[progress] 25900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=25900) elapsed=0.5s rate=57389.0/s
[progress] 26000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26000) elapsed=0.5s rate=57387.4/s
[progress] 26100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26100) elapsed=0.5s rate=57396.7/s
[progress] 26200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26200) elapsed=0.5s rate=57387.6/s
[progress] 26300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26300) elapsed=0.5s rate=57396.4/s
[progress] 26400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26400) elapsed=0.5s rate=57429.0/s
[progress] 26500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26500) elapsed=0.5s rate=57460.0/s
[progress] 26600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26600) elapsed=0.5s rate=57376.9/s
[progress] 26700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26700) elapsed=0.5s rate=57411.0/s
[progress] 26800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26800) elapsed=0.5s rate=57443.3/s
[progress] 26900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=26900) elapsed=0.5s rate=57479.3/s
[chrom] chr12 done in 0.0s
[chrom] starting chr13
[progress] 27000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27000) elapsed=0.5s rate=57513.2/s
[progress] 27100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27100) elapsed=0.5s rate=57531.0/s
[progress] 27200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27200) elapsed=0.5s rate=57569.3/s
[progress] 27300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27300) elapsed=0.5s rate=57431.0/s
[progress] 27400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27400) elapsed=0.5s rate=57460.0/s
[progress] 27500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27500) elapsed=0.5s rate=57494.6/s
[chrom] chr13 done in 0.0s
[chrom] starting chr14
[progress] 27600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27600) elapsed=0.5s rate=57499.3/s
[progress] 27700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27700) elapsed=0.5s rate=57538.0/s
[progress] 27800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27800) elapsed=0.5s rate=57575.8/s
[progress] 27900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=27900) elapsed=0.5s rate=57608.5/s
[progress] 28000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28000) elapsed=0.5s rate=57501.2/s
[progress] 28100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28100) elapsed=0.5s rate=57536.8/s
[progress] 28200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28200) elapsed=0.5s rate=57575.9/s
[progress] 28300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28300) elapsed=0.5s rate=57614.7/s
[progress] 28400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28400) elapsed=0.5s rate=57640.7/s
[progress] 28500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28500) elapsed=0.5s rate=57660.8/s
[progress] 28600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28600) elapsed=0.5s rate=57679.4/s
[chrom] chr14 done in 0.0s
[chrom] starting chr15
[progress] 28700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28700) elapsed=0.5s rate=57602.1/s
[progress] 28800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28800) elapsed=0.5s rate=57625.9/s
[progress] 28900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=28900) elapsed=0.5s rate=57639.6/s
[progress] 29000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29000) elapsed=0.5s rate=57677.3/s
[progress] 29100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29100) elapsed=0.5s rate=57704.7/s
[progress] 29200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29200) elapsed=0.5s rate=57731.1/s
[progress] 29300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29300) elapsed=0.5s rate=57745.9/s
[progress] 29400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29400) elapsed=0.5s rate=57661.9/s
[progress] 29500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29500) elapsed=0.5s rate=57680.1/s
[progress] 29600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29600) elapsed=0.5s rate=57706.2/s
[progress] 29700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29700) elapsed=0.5s rate=57729.4/s
[progress] 29800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29800) elapsed=0.5s rate=57766.7/s
[chrom] chr15 done in 0.0s
[chrom] starting chr16
[progress] 29900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=29900) elapsed=0.5s rate=57786.9/s
[progress] 30000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30000) elapsed=0.5s rate=57810.8/s
[progress] 30100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30100) elapsed=0.5s rate=57707.7/s
[progress] 30200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30200) elapsed=0.5s rate=57738.0/s
[progress] 30300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30300) elapsed=0.5s rate=57772.0/s
[progress] 30400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30400) elapsed=0.5s rate=57807.1/s
[progress] 30500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30500) elapsed=0.5s rate=57838.6/s
[progress] 30600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30600) elapsed=0.5s rate=57876.0/s
[progress] 30700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30700) elapsed=0.5s rate=57909.8/s
[progress] 30800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30800) elapsed=0.5s rate=57939.5/s
[progress] 30900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=30900) elapsed=0.5s rate=57872.4/s
[progress] 31000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31000) elapsed=0.5s rate=57896.4/s
[progress] 31100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31100) elapsed=0.5s rate=57931.2/s
[progress] 31200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31200) elapsed=0.5s rate=57956.7/s
[progress] 31300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31300) elapsed=0.5s rate=57987.0/s
[progress] 31400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31400) elapsed=0.5s rate=58020.1/s
[progress] 31500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31500) elapsed=0.5s rate=58038.4/s
[progress] 31600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31600) elapsed=0.5s rate=57962.3/s
[progress] 31700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31700) elapsed=0.5s rate=57990.9/s
[chrom] chr16 done in 0.0s
[chrom] starting chr17
[progress] 31800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31800) elapsed=0.5s rate=58005.7/s
[progress] 31900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=31900) elapsed=0.5s rate=58029.1/s
[progress] 32000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32000) elapsed=0.6s rate=58034.2/s
[progress] 32100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32100) elapsed=0.6s rate=58062.2/s
[progress] 32200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32200) elapsed=0.6s rate=58093.9/s
[progress] 32300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32300) elapsed=0.6s rate=57994.3/s
[progress] 32400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32400) elapsed=0.6s rate=58014.6/s
[progress] 32500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32500) elapsed=0.6s rate=58041.2/s
[progress] 32600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32600) elapsed=0.6s rate=58059.9/s
[progress] 32700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32700) elapsed=0.6s rate=58092.9/s
[progress] 32800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32800) elapsed=0.6s rate=58117.3/s
[progress] 32900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=32900) elapsed=0.6s rate=58143.9/s
[progress] 33000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33000) elapsed=0.6s rate=58063.9/s
[progress] 33100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33100) elapsed=0.6s rate=58085.1/s
[progress] 33200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33200) elapsed=0.6s rate=58117.9/s
[progress] 33300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33300) elapsed=0.6s rate=58152.9/s
[progress] 33400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33400) elapsed=0.6s rate=58180.7/s
[progress] 33500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33500) elapsed=0.6s rate=58207.8/s
[progress] 33600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33600) elapsed=0.6s rate=58233.9/s
[progress] 33700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33700) elapsed=0.6s rate=58257.8/s
[progress] 33800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33800) elapsed=0.6s rate=58202.5/s
[progress] 33900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=33900) elapsed=0.6s rate=58234.3/s
[progress] 34000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34000) elapsed=0.6s rate=58269.2/s
[progress] 34100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34100) elapsed=0.6s rate=58303.5/s
[progress] 34200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34200) elapsed=0.6s rate=58334.7/s
[progress] 34300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34300) elapsed=0.6s rate=58344.2/s
[progress] 34400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34400) elapsed=0.6s rate=58372.0/s
[progress] 34500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34500) elapsed=0.6s rate=58285.6/s
[progress] 34600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34600) elapsed=0.6s rate=58308.1/s
[chrom] chr17 done in 0.0s
[chrom] starting chr18
[progress] 34700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34700) elapsed=0.6s rate=58320.7/s
[progress] 34800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34800) elapsed=0.6s rate=58331.0/s
[progress] 34900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=34900) elapsed=0.6s rate=58342.3/s
[progress] 35000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35000) elapsed=0.6s rate=58332.6/s
[progress] 35100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35100) elapsed=0.6s rate=58217.9/s
[chrom] chr18 done in 0.0s
[chrom] starting chr19
[progress] 35200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35200) elapsed=0.6s rate=58232.6/s
[progress] 35300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35300) elapsed=0.6s rate=58214.0/s
[progress] 35400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35400) elapsed=0.6s rate=58233.0/s
[progress] 35500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35500) elapsed=0.6s rate=58233.2/s
[progress] 35600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35600) elapsed=0.6s rate=58240.5/s
[progress] 35700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35700) elapsed=0.6s rate=58264.9/s
[progress] 35800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35800) elapsed=0.6s rate=58164.8/s
[progress] 35900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=35900) elapsed=0.6s rate=58174.6/s
[progress] 36000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36000) elapsed=0.6s rate=58208.5/s
[progress] 36100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36100) elapsed=0.6s rate=58233.5/s
[progress] 36200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36200) elapsed=0.6s rate=58261.3/s
[progress] 36300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36300) elapsed=0.6s rate=58278.9/s
[progress] 36400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36400) elapsed=0.6s rate=58294.3/s
[progress] 36500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36500) elapsed=0.6s rate=58261.7/s
[progress] 36600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36600) elapsed=0.6s rate=58269.3/s
[progress] 36700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36700) elapsed=0.6s rate=58297.6/s
[progress] 36800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36800) elapsed=0.6s rate=58314.7/s
[progress] 36900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=36900) elapsed=0.6s rate=58324.6/s
[progress] 37000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37000) elapsed=0.6s rate=58360.4/s
[progress] 37100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37100) elapsed=0.6s rate=58393.2/s
[progress] 37200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37200) elapsed=0.6s rate=58323.2/s
[progress] 37300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37300) elapsed=0.6s rate=58339.3/s
[progress] 37400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37400) elapsed=0.6s rate=58356.6/s
[progress] 37500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37500) elapsed=0.6s rate=58381.6/s
[progress] 37600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37600) elapsed=0.6s rate=58409.7/s
[progress] 37700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37700) elapsed=0.6s rate=58429.1/s
[progress] 37800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37800) elapsed=0.6s rate=58443.4/s
[progress] 37900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=37900) elapsed=0.6s rate=58464.9/s
[progress] 38000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38000) elapsed=0.7s rate=58373.3/s
[progress] 38100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38100) elapsed=0.7s rate=58393.4/s
[progress] 38200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38200) elapsed=0.7s rate=58420.6/s
[progress] 38300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38300) elapsed=0.7s rate=58454.8/s
[progress] 38400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38400) elapsed=0.7s rate=58482.4/s
[progress] 38500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38500) elapsed=0.7s rate=58518.1/s
[chrom] chr19 done in 0.1s
[chrom] starting chr20
[progress] 38600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38600) elapsed=0.7s rate=58544.7/s
[progress] 38700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38700) elapsed=0.7s rate=58468.9/s
[progress] 38800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38800) elapsed=0.7s rate=58497.0/s
[progress] 38900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=38900) elapsed=0.7s rate=58522.6/s
[progress] 39000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39000) elapsed=0.7s rate=58556.0/s
[progress] 39100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39100) elapsed=0.7s rate=58590.7/s
[progress] 39200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39200) elapsed=0.7s rate=58613.5/s
[progress] 39300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39300) elapsed=0.7s rate=58640.3/s
[progress] 39400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39400) elapsed=0.7s rate=58673.2/s
[progress] 39500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39500) elapsed=0.7s rate=58628.2/s
[progress] 39600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39600) elapsed=0.7s rate=58651.9/s
[progress] 39700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39700) elapsed=0.7s rate=58671.5/s
[chrom] chr20 done in 0.0s
[chrom] starting chr21
[progress] 39800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39800) elapsed=0.7s rate=58692.3/s
[progress] 39900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=39900) elapsed=0.7s rate=58715.2/s
[progress] 40000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40000) elapsed=0.7s rate=58738.5/s
[progress] 40100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40100) elapsed=0.7s rate=58768.7/s
[progress] 40200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40200) elapsed=0.7s rate=58792.7/s
[progress] 40300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40300) elapsed=0.7s rate=58723.4/s
[chrom] chr21 done in 0.0s
[chrom] starting chr22
[progress] 40400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40400) elapsed=0.7s rate=58736.8/s
[progress] 40500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40500) elapsed=0.7s rate=58767.7/s
[progress] 40600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40600) elapsed=0.7s rate=58788.0/s
[progress] 40700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40700) elapsed=0.7s rate=58811.0/s
[progress] 40800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40800) elapsed=0.7s rate=58836.8/s
[progress] 40900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=40900) elapsed=0.7s rate=58859.2/s
[progress] 41000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41000) elapsed=0.7s rate=58875.2/s
[progress] 41100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41100) elapsed=0.7s rate=58842.6/s
[progress] 41200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41200) elapsed=0.7s rate=58864.3/s
[progress] 41300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41300) elapsed=0.7s rate=58888.7/s
[progress] 41400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41400) elapsed=0.7s rate=58907.3/s
[chrom] chr22 done in 0.0s
[chrom] starting chrX
[progress] 41500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41500) elapsed=0.7s rate=58925.8/s
[progress] 41600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41600) elapsed=0.7s rate=58947.6/s
[progress] 41700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41700) elapsed=0.7s rate=58973.6/s
[progress] 41800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41800) elapsed=0.7s rate=59002.6/s
[progress] 41900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=41900) elapsed=0.7s rate=58912.2/s
[progress] 42000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42000) elapsed=0.7s rate=58933.0/s
[progress] 42100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42100) elapsed=0.7s rate=58956.8/s
[progress] 42200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42200) elapsed=0.7s rate=58991.9/s
[progress] 42300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42300) elapsed=0.7s rate=59017.0/s
[progress] 42400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42400) elapsed=0.7s rate=59039.2/s
[progress] 42500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42500) elapsed=0.7s rate=59058.6/s
[progress] 42600 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42600) elapsed=0.7s rate=59082.4/s
[progress] 42700 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42700) elapsed=0.7s rate=59091.7/s
[progress] 42800 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42800) elapsed=0.7s rate=59123.2/s
[progress] 42900 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=42900) elapsed=0.7s rate=59144.3/s
[progress] 43000 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=43000) elapsed=0.7s rate=59166.3/s
[progress] 43100 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=43100) elapsed=0.7s rate=59189.6/s
[progress] 43200 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=43200) elapsed=0.7s rate=59212.3/s
[progress] 43300 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=43300) elapsed=0.7s rate=59233.4/s
[progress] 43400 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=43400) elapsed=0.7s rate=59265.6/s
[progress] 43500 variants processed (ok=0 no_reads=0 ref_mismatch=0 other=43500) elapsed=0.7s rate=59292.7/s
[chrom] chrX done in 0.0s
[chrom] starting chrY
[chrom] chrY done in 0.0s
[done] 43526 variants in 0.7s (ok=0 no_reads=0 ref_mismatch=0 other=43526)