File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/abf7c359e81ac281f19ffb4ed7ee92/.command.log
Size
2.2 KB
Task
EMIT_ALPHA_FEATURES (HG01928_x_HG01952_FF_10)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/users/sgoyal/resources/GRCh38/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/abf7c359e81ac281f19ffb4ed7ee92/.command.sh
  Downloading: s3://natera-platform-sandbox/users/sgoyal/resources/GRCh38/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/users/tdouglas/nipt_caller/adaptive_alpha_features/inputs/vcfs/HG01928_x_HG01952_FF_10.vcf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1bd335d96dabf40ecc1958ac36624d/HG01928_x_HG01952_FF_10.mix.bam
ERROR "ls s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1bd335d96dabf40ecc1958ac36624d/HG01928_x_HG01952_FF_10.mix.bam": no object found
ERROR "cp s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1bd335d96dabf40ecc1958ac36624d/HG01928_x_HG01952_FF_10.mix.bam HG01928_x_HG01952_FF_10.mix.bam": NoSuchKey: The specified key does not exist. status code: 404, request id: 8D7Q2KE77J98GW3K, host id: sFxyshM1lWMIeOHiqPLPAd1w0VUFZmxifV49JKeWaBOUzHYMfIs3kS1nhr0MEVUldG8vB5kDFkZbZ8YRMjXMtTA2zy3MOSd7
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1bd335d96dabf40ecc1958ac36624d/HG01928_x_HG01952_FF_10.mix.bam.bai
ERROR "ls s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1bd335d96dabf40ecc1958ac36624d/HG01928_x_HG01952_FF_10.mix.bam.bai": no object found
ERROR "cp s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1bd335d96dabf40ecc1958ac36624d/HG01928_x_HG01952_FF_10.mix.bam.bai HG01928_x_HG01952_FF_10.mix.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: 8D7M3FXY1MSS79BF, host id: YoV5G8RfrTegghTOKAPYlV8EAUvWXnPnTLHhDCZ5ZWPx1qEjJ5XZ2KroAltTAhDhijZeBRn+nFUt+A8v0+4K3iNUag20t1E6
ERROR "cp s3://natera-platform-sandbox/users/tdouglas/nipt_caller/adaptive_alpha_features/inputs/vcfs/HG01928_x_HG01952_FF_10.vcf HG01928_x_HG01952_FF_10.vcf": rename ./HG01928_x_HG01952_FF_10.vcf2972053200 HG01928_x_HG01952_FF_10.vcf: no such file or directory
ERROR "cp s3://natera-platform-sandbox/users/sgoyal/resources/GRCh38/Homo_sapiens_assembly38.fasta Homo_sapiens_assembly38.fasta": rename ./Homo_sapiens_assembly38.fasta4258636793 Homo_sapiens_assembly38.fasta: no such file or directory