File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6ea7bbc9a17916af2a2175c3793343/.command.log
Size
1.9 KB
Task
EMIT_ALPHA_FEATURES (HG00741_x_HG01106_FF_5)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/users/sgoyal/resources/GRCh38/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6ea7bbc9a17916af2a2175c3793343/.command.sh
  Downloading: s3://natera-platform-sandbox/users/tdouglas/nipt_caller/adaptive_alpha_features/inputs/targets/HG00741_x_HG01106_FF_5.targets.tsv
  Downloading: s3://natera-platform-sandbox/users/sgoyal/resources/GRCh38/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/users/tdouglas/nipt_caller/adaptive_alpha_features/inputs/vcfs/HG00741_x_HG01106_FF_5.vcf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6ea7bbc9a17916af2a2175c3793343/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/e0b9a2a55a305ad75e0ac2b64191d6/HG00741_x_HG01106_FF_5.mix.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/e0b9a2a55a305ad75e0ac2b64191d6/HG00741_x_HG01106_FF_5.mix.bam
ERROR "ls s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/e0b9a2a55a305ad75e0ac2b64191d6/HG00741_x_HG01106_FF_5.mix.bam": no object found
ERROR "ls s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/e0b9a2a55a305ad75e0ac2b64191d6/HG00741_x_HG01106_FF_5.mix.bam.bai": no object found
ERROR "cp s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/e0b9a2a55a305ad75e0ac2b64191d6/HG00741_x_HG01106_FF_5.mix.bam HG00741_x_HG01106_FF_5.mix.bam": NoSuchKey: The specified key does not exist. status code: 404, request id: HJC8D1X6T0PM9HX4, host id: Q96n23jTz9h7tM0UrT6FZm+plAmwEfyp5AhtMr7jrKTMC8chkf3Xgfagi+jE26SXGOvH4/ksPrU=
ERROR "cp s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/e0b9a2a55a305ad75e0ac2b64191d6/HG00741_x_HG01106_FF_5.mix.bam.bai HG00741_x_HG01106_FF_5.mix.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: HJC6956658G8ZGYK, host id: 27j66yWtT/lj8UoL5GBPe/BFnu8O9851fFfd7Twg520wN7sr0l4/rm9hYvP4UpWARsbwj9NO528=