apiVersion: batch/v1
kind: Job
metadata:
  name: nf-c4221b7648e900594e1948b1556fe002-2c714
  namespace: nextflow
  labels: &id001 {nextflow.io/processName: EMIT_ALPHA_FEATURES, nextflow.io/runName: adaptive-alpha-features-6a271fed,
    nextflow.io/sessionId: uuid-10cad5db-198e-44eb-92bf-951e8dd91a74, pltf/run-name: adaptive-alpha-features-6a271fed,
    pltf/run-component: task, nextflow.io/app: nextflow, nextflow.io/taskName: EMIT_ALPHA_FEATURES_HG03687_x_HG03780_FF_5,
    pltf/run-id: 1819271d, pltf/run-engine: nextflow, pltf/run-creator: tdouglas}
  ownerReferences:
  - {apiVersion: v1, kind: Pod, name: adaptive-alpha-features-6a271fed-1819271d-8xnx9,
    uid: ac1703f8-55b5-48cd-9b62-0f89d5a3394f, controller: true, blockOwnerDeletion: true}
spec:
  backoffLimit: 0
  template:
    metadata:
      name: nf-c4221b7648e900594e1948b1556fe002-2c714
      namespace: nextflow
      labels: *id001
    spec:
      restartPolicy: Never
      containers:
      - name: nextflow
        image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/community.wave.seqera.io/library/htslib_pysam_numpy_scipy:275cef53a6366c67
        args: [/bin/bash, -o, pipefail, -c, 'trap "{ ret=$?; /opt/s5cmd/bin/s5cmd
            --log error cp .command.log s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/221b7648e900594e1948b1556fe002/.command.log||true;
            exit $ret; }" EXIT; /opt/s5cmd/bin/s5cmd --log error cat s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/221b7648e900594e1948b1556fe002/.command.run
            | bash 2>&1 | tee .command.log']
        workingDir: /tmp
        imagePullPolicy: Always
        env:
        - {name: SSL_CERT_FILE, value: /opt/s5cmd/ssl/ca-certificates.crt}
        - {name: SSL_CERT_DIR, value: /opt/s5cmd/ssl/certs}
        resources:
          requests: {cpu: 2, memory: 4096Mi, ephemeral-storage: 30720Mi}
          limits: {memory: 4096Mi, ephemeral-storage: 30720Mi}
        volumeMounts:
        - {name: vol-237, mountPath: /tmp}
        - {name: vol-238, mountPath: /app}
        - {name: vol-239, mountPath: /mnt/secrets}
        - {name: vol-240, mountPath: /opt/s5cmd}
      nodeSelector: {karpenter.sh/capacity-type: spot}
      serviceAccountName: sa-nextflow
      securityContext: {runAsUser: 1000}
      tolerations:
      - {key: workload, operator: Equal, value: nextflow-task, effect: NoSchedule}
      activeDeadlineSeconds: 1800
      volumes:
      - name: vol-237
        emptyDir: []
      - name: vol-238
        emptyDir: []
      - name: vol-239
        secret: {secretName: aws-secrets-manager}
      - name: vol-240
        hostPath: {path: /opt/s5cmd}
  ttlSecondsAfterFinished: 28800