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AI-generated troubleshooting analysis is available in the AI Analysis tab.
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume d11dfe5c-4ee5-4038-a568-a472e3b1657d -name ae-bam-evidence-c5-6a063b1a
Error Report
Error executing process > 'QUERY_AE_SUPPORT (3)'
Caused by:
Can't stage file /mnt/efs/dev_env/rsrivas/projects/dna_fusion_sv/29_cohort5_truth/bam_evidence/prep_out/events/659_dMH_events.tsv -- file does not exist
Command executed:
pip install pyliftover --quiet
query_ae_evidence.py \
--events 659_dMH_events.tsv \
--bam 659_dMH-T1.bam \
--output 659_dMH_evidence.tsv \
--window 500 \
--D 20 \
--R 3
Command exit status:
-
Command output:
(empty)
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/ae-fusion-bam-evidence:1.0.0
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- d11dfe5c-4ee5-4038-a568-a472e3b1657d
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- Deleted (26.2 KB) by @rsrivas on 2026-06-02 12:44 PM. List of old outputs
- Submitted By
- rsrivas (project:altera, pipeline:ae-fusion-bam-evidence)
- Resumed
- No
Cost and Runtime
- Status
- failed
- Outputs
- Deleted
- Started
- May 14, 2026 2:14 PM
- Completed
- May 14, 2026 2:14 PM
- Duration
- 2s
- Exit Status
- -