{
  "sequencing_library_id": "869_TB0-T1-TDNA-1_B23KKT2LT4_1",
  "secondary_sequencing_library_id": "869_TB0-N1-BDNA-1_A237CFYLT3_1",
  "data_source": "altera_inhouse_dna",
  "harmonized_software_version": "198bb41c7021831bbb85b464458aae3d09416b97",
  "software_version": "2418a8b1c2ce0891ab655d4699cb6f795c84298a",
  "harmonized_s3_path": "s3://natera-platform-sandbox/platform-users/sgreer/projects/A15_hmz_test/aih_dna",
  "s3_path": "s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools__2418a8b1--20260217-172825",
  "s3_path_params": "s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools__2418a8b1--20260217-172825/pipeline_info/params_2026-02-17_17-33-00.json",
  "s3_path_qc": null,
  "altera_exact_report_details": null,
  "qc": {
    "calculated_sex": "XX",
    "calculated_sex_secondary": "XX",
    "tumor_normal_correlation": 0.9652,
    "tumor_contamination": 0.075,
    "normal_contamination": 0.054,
    "tso500_wetlab_pass": null,
    "tso500_seq_pass": null
  },
  "harmonized_input_file_status": {
    "snv_somatic": true,
    "snv_somatic_phased": true,
    "snv_germline": true,
    "cnv": true,
    "sv": true,
    "fusion": false,
    "splice": false,
    "tmb": true,
    "msi": true,
    "hrd_scarhrd": true,
    "hrd_tih": true,
    "hla": true,
    "chip": true
  },
  "harmonized_summary_stats": {
    "somatic_snv_num": 229,
    "somatic_indel_num": 22,
    "somatic_hotspot_num": 0,
    "somatic_variant_phased_num": 17,
    "somatic_cnv_num": 15681,
    "somatic_cnv_del_num": 94,
    "somatic_cnv_amp_num": 15587,
    "somatic_cnv_segment_num": 175,
    "somatic_sv_fusion_num": 62,
    "somatic_sv_fusion_actionable_num": 0,
    "chip_variant_num": 12411,
    "germline_snv_num": 28319,
    "germline_indel_num": 2002,
    "germline_snv_hrr_num": 114,
    "germline_indel_hrr_num": 37,
    "germline_cnv_hrr_num": null,
    "tumor_purity": 0.56456467477885,
    "tumor_ploidy": 3.79789096727057,
    "scarhrd_score": 35.0,
    "scarhrd_status": "HRD_neg",
    "tih_hrd_score": 113.0,
    "tih_hrd_status": "HRD_pos",
    "tso500_gis": null,
    "tso500_hrd_status": null,
    "msi_status": "MSI-L",
    "msi_score": 17.68,
    "tmb_status": "LOW",
    "tmb_score": 1.8448,
    "rna_fusion_total_num": null,
    "rna_fusion_filtered_num": null,
    "tso500_overlap_rna_fusion_total_num": null,
    "rna_fusion_actionable_num": null,
    "rna_fusion_filtered_and_actionable_num": null,
    "tso500_overlap_rna_fusion_filtered_num": null,
    "rna_exon_skipping_total_num": null,
    "rna_exon_skipping_actionable_num": null,
    "tso500_overlap_somatic_snv_num": 10,
    "tso500_overlap_somatic_indel_num": 1,
    "tso500_overlap_somatic_hotspot_num": 0,
    "tso500_overlap_somatic_variant_phased_num": 0,
    "tso500_overlap_somatic_cnv_num": 415,
    "tso500_overlap_somatic_cnv_del_num": 3,
    "tso500_overlap_somatic_cnv_amp_num": 412
  }
}