{ "sequencing_library_id": "869_VV1-T1-TDNA-1_B23KKT2LT4_1", "secondary_sequencing_library_id": "869_VV1-N1-BDNA-1_A237CFYLT3_1", "data_source": "altera_inhouse_dna", "harmonized_software_version": "198bb41c7021831bbb85b464458aae3d09416b97", "software_version": "2418a8b1c2ce0891ab655d4699cb6f795c84298a", "harmonized_s3_path": "s3://natera-platform-sandbox/platform-users/sgreer/projects/A15_hmz_test/aih_dna", "s3_path": "s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools__2418a8b1--20260217-172825", "s3_path_params": "s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/tools__2418a8b1--20260217-172825/pipeline_info/params_2026-02-17_17-33-00.json", "s3_path_qc": null, "altera_exact_report_details": null, "qc": { "calculated_sex": "XX", "calculated_sex_secondary": "XX", "tumor_normal_correlation": 0.9541, "tumor_contamination": 0.076, "normal_contamination": 0.044, "tso500_wetlab_pass": null, "tso500_seq_pass": null }, "harmonized_input_file_status": { "snv_somatic": true, "snv_somatic_phased": true, "snv_germline": true, "cnv": true, "sv": true, "fusion": false, "splice": false, "tmb": true, "msi": true, "hrd_scarhrd": true, "hrd_tih": true, "hla": true, "chip": true }, "harmonized_summary_stats": { "somatic_snv_num": 374, "somatic_indel_num": 42, "somatic_hotspot_num": 0, "somatic_variant_phased_num": 21, "somatic_cnv_num": 11507, "somatic_cnv_del_num": 1548, "somatic_cnv_amp_num": 9959, "somatic_cnv_segment_num": 376, "somatic_sv_fusion_num": 65, "somatic_sv_fusion_actionable_num": 3, "chip_variant_num": 12307, "germline_snv_num": 28815, "germline_indel_num": 2069, "germline_snv_hrr_num": 119, "germline_indel_hrr_num": 40, "germline_cnv_hrr_num": null, "tumor_purity": 0.451229242785001, "tumor_ploidy": 3.10644078588273, "scarhrd_score": 75.0, "scarhrd_status": "HRD_pos", "tih_hrd_score": 134.0, "tih_hrd_status": "HRD_pos", "tso500_gis": null, "tso500_hrd_status": null, "msi_status": "MSI-L", "msi_score": 17.01, "tmb_status": "LOW", "tmb_score": 2.8404, "rna_fusion_total_num": null, "rna_fusion_filtered_num": null, "tso500_overlap_rna_fusion_total_num": null, "rna_fusion_actionable_num": null, "rna_fusion_filtered_and_actionable_num": null, "tso500_overlap_rna_fusion_filtered_num": null, "rna_exon_skipping_total_num": null, "rna_exon_skipping_actionable_num": null, "tso500_overlap_somatic_snv_num": 18, "tso500_overlap_somatic_indel_num": 3, "tso500_overlap_somatic_hotspot_num": 0, "tso500_overlap_somatic_variant_phased_num": 4, "tso500_overlap_somatic_cnv_num": 320, "tso500_overlap_somatic_cnv_del_num": 53, "tso500_overlap_somatic_cnv_amp_num": 267 } }