.command.log - Workdir - RECALL:EXTRACT_AIH_QC_METRICS (aih-qc)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/db09ad904ca13b59663c28872d6f88/.command.log
Size: 1.2 KB
Task: RECALL:EXTRACT_AIH_QC_METRICS (aih-qc)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/fc0e79489c72ac5b63bcf999869e66/sample_manifest.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/db09ad904ca13b59663c28872d6f88/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/db09ad904ca13b59663c28872d6f88/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e66e3495-5ae9-4007-b430-9204468829ce/d4/1099df9cc35a27f920d8f8f117c23a/dev_rna_experiments_unified_table_2026-05-29.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e66e3495-5ae9-4007-b430-9204468829ce/aa/b1828f9a267e5aee601a313bbf58e0/dev_rna_harmonization_latest_2026-06-04.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e66e3495-5ae9-4007-b430-9204468829ce/69/a005107b3e1cd582879709e15085a7/qc_rules_default.yaml
==> STAGING COMPLETE (6 inputs)

Traceback (most recent call last):
  File "/tmp/nxf.gqsGqgIQdI/nextflow-bin/extract_aih_qc_metrics.py", line 16, in <module>
    from qc_rules import apply_qc_status, load_qc_rules
  File "/tmp/nxf.gqsGqgIQdI/nextflow-bin/qc_rules.py", line 10, in <module>
    import yaml
ModuleNotFoundError: No module named 'yaml'