apiVersion: batch/v1
kind: Job
metadata:
  name: nf-36214e7243186b2019e0ff4d94aa4fc9-f2faa
  namespace: nextflow
  labels: &id001 {nextflow.io/processName: RECALL_EXTRACT_AIH_QC_METRICS, nextflow.io/queue: Nextflow-OnDemand,
    nextflow.io/runName: altera_residuals_and_slides_SMR01, nextflow.io/sessionId: uuid-e66e3495-5ae9-4007-b430-9204468829ce,
    pltf/run-name: altera_residuals_and_slides_SMR01, capacityType: on-demand, pltf/run-component: task,
    nextflow.io/app: nextflow, nextflow.io/taskName: RECALL_EXTRACT_AIH_QC_METRICS_aih-qc,
    pltf/run-id: ce2d9bb2, pltf/run-engine: nextflow, pltf/run-creator: smedina}
  annotations: &id002 {ad.datadoghq.com/nextflow.logs: '[{"source":"nextflow","service":"nextflow-task","log_processing_rules":[{"type":"multi_line","name":"nextflow_task_multiline","pattern":"^\\x00NEVER_MATCH"}]}]',
    ad.datadoghq.com/tags: '{"run_name":"altera_residuals_and_slides_SMR01","run_id":"ce2d9bb2","run_creator":"smedina","run_component":"task","task_process":"RECALL:EXTRACT_AIH_QC_METRICS","task_name":"RECALL:EXTRACT_AIH_QC_METRICS
      (aih-qc)"}', karpenter.sh/do-not-disrupt: 'true'}
  ownerReferences:
  - {apiVersion: v1, kind: Pod, name: altera-residuals-and-slides-smr01-ce2d9bb2-jtkxp,
    uid: 51a87aad-6a1d-42c2-bd4f-93929b074312, controller: true, blockOwnerDeletion: true}
spec:
  backoffLimit: 0
  template:
    metadata:
      name: nf-36214e7243186b2019e0ff4d94aa4fc9-f2faa
      namespace: nextflow
      labels: *id001
      annotations: *id002
    spec:
      restartPolicy: Never
      containers:
      - name: nextflow
        image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/rnafusion-performance-s3-python:1.0.0
        args: [/bin/bash, -o, pipefail, -c, 'trap "{ ret=$?; /opt/s5cmd/bin/s5cmd
            --log error cp .command.log s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/214e7243186b2019e0ff4d94aa4fc9/.command.log||true;
            exit $ret; }" EXIT; /opt/s5cmd/bin/s5cmd --log error cat s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/214e7243186b2019e0ff4d94aa4fc9/.command.run
            | bash 2>&1 | tee .command.log']
        workingDir: /tmp
        imagePullPolicy: Always
        env:
        - {name: SSL_CERT_DIR, value: /opt/s5cmd/ssl/certs}
        - {name: SSL_CERT_FILE, value: /opt/s5cmd/ssl/ca-certificates.crt}
        resources:
          requests: {cpu: 1, memory: 12288Mi, ephemeral-storage: 61440Mi}
          limits: {memory: 12288Mi, ephemeral-storage: 61440Mi}
        volumeMounts:
        - {name: vol-17, mountPath: /app}
        - {name: vol-18, mountPath: /tmp}
        - {name: vol-19, mountPath: /mnt/secrets}
        - {name: vol-20, mountPath: /opt/s5cmd}
      nodeSelector: {workload: nextflow-task, karpenter.sh/capacity-type: on-demand}
      affinity:
        nodeAffinity:
          requiredDuringSchedulingIgnoredDuringExecution:
            nodeSelectorTerms:
            - matchExpressions:
              - {key: eks.amazonaws.com/instance-gpu-count, operator: DoesNotExist}
      serviceAccountName: sa-nextflow
      securityContext: {runAsUser: 1000}
      tolerations:
      - {key: workload, operator: Equal, value: nextflow-task, effect: NoSchedule}
      activeDeadlineSeconds: 43200
      volumes:
      - name: vol-17
        emptyDir: []
      - name: vol-18
        emptyDir: []
      - name: vol-19
        secret: {secretName: aws-secrets-manager}
      - name: vol-20
        hostPath: {path: /opt/s5cmd}
  ttlSecondsAfterFinished: 28800