apiVersion: batch/v1
kind: Job
metadata:
  name: nf-4a476a5ef90bb287a28209934f48b369-9a3e4
  namespace: nextflow
  labels: &id001 {nextflow.io/processName: RECALL_RESOLVE_EXON_SKIPPING_CATALOG, nextflow.io/queue: Nextflow-OnDemand,
    nextflow.io/runName: altera_residuals_and_slides_v10_recall, nextflow.io/sessionId: uuid-fa6afd49-f884-4453-84c4-2e0181c9d4a2,
    pltf/run-name: altera_residuals_and_slides_v10_recall, capacityType: spot, pltf/run-component: task,
    nextflow.io/app: nextflow, nextflow.io/taskName: RECALL_RESOLVE_EXON_SKIPPING_CATALOG_exon-skipping,
    pltf/run-id: 73d84268, pltf/run-engine: nextflow, pltf/run-creator: smedina}
  annotations: &id002 {ad.datadoghq.com/nextflow.logs: '[{"source":"nextflow","service":"nextflow-task","log_processing_rules":[{"type":"multi_line","name":"nextflow_task_multiline","pattern":"^\\x00NEVER_MATCH"}]}]',
    ad.datadoghq.com/tags: '{"run_name":"altera_residuals_and_slides_v10_recall","run_id":"73d84268","run_creator":"smedina","run_component":"task","task_process":"RECALL:RESOLVE_EXON_SKIPPING_CATALOG","task_name":"RECALL:RESOLVE_EXON_SKIPPING_CATALOG
      (exon-skipping)"}', karpenter.sh/do-not-disrupt: 'true'}
  ownerReferences:
  - {apiVersion: v1, kind: Pod, name: altera-residuals-and-slides-v10-recall-73d84268-t5z67,
    uid: f4249f7c-a69b-411d-915c-29fd8ee46100, controller: true, blockOwnerDeletion: true}
spec:
  backoffLimit: 0
  template:
    metadata:
      name: nf-4a476a5ef90bb287a28209934f48b369-9a3e4
      namespace: nextflow
      labels: *id001
      annotations: *id002
    spec:
      restartPolicy: Never
      containers:
      - name: nextflow
        image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/rnafusion-performance-python:1.0.0
        args: [/bin/bash, -o, pipefail, -c, 'trap "{ ret=$?; /opt/s5cmd/bin/s5cmd
            --log error cp .command.log s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/476a5ef90bb287a28209934f48b369/.command.log||true;
            exit $ret; }" EXIT; /opt/s5cmd/bin/s5cmd --log error cat s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/476a5ef90bb287a28209934f48b369/.command.run
            | bash 2>&1 | tee .command.log']
        workingDir: /tmp
        imagePullPolicy: Always
        env:
        - {name: SSL_CERT_DIR, value: /opt/s5cmd/ssl/certs}
        - {name: SSL_CERT_FILE, value: /opt/s5cmd/ssl/ca-certificates.crt}
        resources:
          requests: {cpu: 1, memory: 4096Mi, ephemeral-storage: 20480Mi}
          limits: {memory: 4096Mi, ephemeral-storage: 20480Mi}
        volumeMounts:
        - {name: vol-5, mountPath: /app}
        - {name: vol-6, mountPath: /tmp}
        - {name: vol-7, mountPath: /mnt/secrets}
        - {name: vol-8, mountPath: /opt/s5cmd}
      nodeSelector: {workload: nextflow-task, karpenter.sh/capacity-type: spot}
      affinity:
        nodeAffinity:
          requiredDuringSchedulingIgnoredDuringExecution:
            nodeSelectorTerms:
            - matchExpressions:
              - {key: eks.amazonaws.com/instance-gpu-count, operator: DoesNotExist}
      serviceAccountName: sa-nextflow
      securityContext: {runAsUser: 1000}
      tolerations:
      - {key: workload, operator: Equal, value: nextflow-task, effect: NoSchedule}
      activeDeadlineSeconds: 14400
      volumes:
      - name: vol-5
        emptyDir: []
      - name: vol-6
        emptyDir: []
      - name: vol-7
        secret: {secretName: aws-secrets-manager}
      - name: vol-8
        hostPath: {path: /opt/s5cmd}
  ttlSecondsAfterFinished: 28800