.command.sh - Workdir - RECALL:VALIDATE_METADATA (manifest)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/2e0b196586440a55e76742e6fd91ba/.command.sh
Size: 476 bytes
Task: RECALL:VALIDATE_METADATA (manifest)
Attempt

Content

#!/bin/bash -euo pipefail
validate_metadata.py \
    --metadata dev_rna_experiments_unified_table_2026-05-29.tsv \
    --output sample_manifest.tsv \
     \
     \
    --target-experiments dev_rna_exp0016,cgp_rna_exp0034 \
    --target-specimen-source signatera,altera_exact \
    --target-sample-type clinical

cat <<-END_VERSIONS > versions.yml
"RECALL:VALIDATE_METADATA":
    python: $(python --version 2>&1 | sed 's/Python //')
    validate_metadata: "1.0.0"
END_VERSIONS