File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/2cb393ea8cb5e13543fec7c6b40e82/.command.err
Size
1.5 KB
Attempt
Traceback (most recent call last):
  File "/tmp/nxf.YXrohIXWLp/nextflow-bin/resolve_gene_tier.py", line 102, in <module>
    main()
  File "/tmp/nxf.YXrohIXWLp/nextflow-bin/resolve_gene_tier.py", line 88, in main
    gene_set = gene_set_from_tier_spec(match, yaml_dir)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/nxf.YXrohIXWLp/nextflow-bin/resolve_gene_tier.py", line 34, in gene_set_from_tier_spec
    df = pd.read_csv(p, header=None)
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 873, in read_csv
    return _read(filepath_or_buffer, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 300, in _read
    parser = TextFileReader(filepath_or_buffer, **kwds)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 1645, in __init__
    self._engine = self._make_engine(f, self.engine)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 1904, in _make_engine
    self.handles = get_handle(
                   ^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/common.py", line 930, in get_handle
    handle = open(
             ^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/nxf.YXrohIXWLp/TSO500_RNAgenelist.txt'