File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/e5f859f13665ca25ebd51df7a09ea7/.command.sh
Size
378 bytes
Task
RECALL:COLLECT_QC_METRICS (qc)
Attempt

Content

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#!/bin/bash -euo pipefail
collect_qc_metrics.py \
    --discovered discovered_outputs.tsv \
    --manifest sample_manifest_qc.tsv \
    --output qc_metrics.tsv \
    --missing-audit qc_missing_or_unreadable.tsv

cat <<-END_VERSIONS > versions.yml
"RECALL:COLLECT_QC_METRICS":
    python: $(python --version 2>&1 | sed 's/Python //')
    collect_qc_metrics: "1.0.0"
END_VERSIONS