#!/bin/bash -euo pipefail
collect_qc_metrics.py \
    --discovered discovered_outputs.tsv \
    --manifest sample_manifest_qc.tsv \
    --output qc_metrics.tsv \
    --missing-audit qc_missing_or_unreadable.tsv

cat <<-END_VERSIONS > versions.yml
"RECALL:COLLECT_QC_METRICS":
    python: $(python --version 2>&1 | sed 's/Python //')
    collect_qc_metrics: "1.0.0"
END_VERSIONS