.command.sh - Workdir - RECALL:AGGREGATE_ALT_TRUTH_CALLS (alt_truth)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/f1e0467373cf1406ab8de59893ec9c/.command.sh
Size: 400 bytes
Task: RECALL:AGGREGATE_ALT_TRUTH_CALLS (alt_truth)
Attempt

Content

#!/bin/bash -euo pipefail
aggregate_harmonized_calls.py \
    --discovered truth_matches.tsv \
    --fusion-column truth_fusion_tsv \
    --manifest sample_manifest_qc.tsv \
    --output alt_truth_harmonized_calls.tsv

cat <<-END_VERSIONS > versions.yml
"RECALL:AGGREGATE_ALT_TRUTH_CALLS":
    python: $(python --version 2>&1 | sed 's/Python //')
    aggregate_harmonized_calls: "1.0.0"
END_VERSIONS