.command.sh - Workdir - RECALL:DISCOVER_PRIMARY_TRUTH (truth-discovery-exact)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/2383bea700e773b740aeee47c8acb8/.command.sh
Size: 442 bytes
Task: RECALL:DISCOVER_PRIMARY_TRUTH (truth-discovery-exact)
Attempt

Content

#!/bin/bash -euo pipefail
discover_truth_outputs.py \
    --manifest sample_manifest_qc.tsv \
    --truth-source exact \
    --output truth_matches.tsv \
    --audit truth_discover_audit.tsv \
    --harmonization-manifest exact_harmonization_latest_2026-06-04.tsv \


cat <<-END_VERSIONS > versions.yml
"RECALL:DISCOVER_PRIMARY_TRUTH":
    python: $(python --version 2>&1 | sed 's/Python //')
    discover_truth_outputs: "1.0.0"
END_VERSIONS