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Filename
qc_metrics.tsv
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s3://natera-platform-sandbox/platform-users/smedina/cgp_postprocess/testing_smr/altera_residuals_recall/qc/qc_metrics.tsv
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Jun 06, 2026 2:41 PM
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.47 0.72 0.0 0.0 0.01 0.02 0.76 2.33 112.9 107.0 387745605.0 9999000000.0 0.0 No 0.611956 0.739943 0.504622 0.035332 0.964668 0.045735 0.938669 0.007726 0.0 424.876729 0.973144 5022460.0 137129597.0 190.0 588455546.0 13332187.0 273629254.0 291507724.0 111.69967040466979 112 82.58089193103532 9.090909090909092 58.0 294227773.0 111.69967040466979 112 82.58089193103532 9.090909090909092 58.0 294227773.0 112.9 98.24955953427279 289077491.0 155.43559 112 0.508551 97.38289999999999 0.0 84.63507922902441 277109173.0 94.18 0.577948 63784953000.0 0.971871 588455546.0 81.27013483333333 24.729699999999998 98.07592433333333 1173_9C s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_9C_T1_RNA_SLD_01 tRNA 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1 1173_9C clinical 2136 1 10 129 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.35 0.59 0.0 0.0 0.0 0.01 0.64 2.04 109.0 104.0 120488245.0 9999000000.0 0.0 No 0.424815 0.634378 0.604717 0.048666 0.951334 0.057241 0.923306 0.00769 0.0 181.216951 0.973884 3229116.0 63123123.0 69.0 345689872.0 7821723.0 126165247.0 136645184.0 108.4641352697773 107 82.92066241406351 9.090909090909092 58.0 172844936.0 108.4641352697773 107 82.92066241406351 9.090909090909092 58.0 172844936.0 109.0 98.10296380334799 169566005.0 132.691708 106 0.609403 97.10069999999999 0.0 84.38571633086504 162719632.0 94.14 0.58259 36413453121.0 0.972736 345689872.0 85.24147012230118 32.014199999999995 98.3512630444638 1173_CH0 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_CH0_T1_RNA_SLD_01 tRNA 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1 1173_CH0 clinical 164 0 0 10 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.34 0.54 0.0 0.0 0.01 0.02 0.68 2.17 115.1 108.0 230091914.0 9999000000.0 0.04 Yes 0.626353 0.766883 0.574719 0.038793 0.961207 0.049646 0.928687 0.009214 0.0 349.67774 0.973613 4482171.0 111059402.0 187.0 560658426.0 11837420.0 221433753.0 238437358.0 114.3694538820683 112 83.7057829575123 9.090909090909092 56.0 280329213.0 114.3694538820683 112 83.7057829575123 9.090909090909092 56.0 280329213.0 115.1 98.39204271586209 275821639.0 170.990581 116 0.580064 97.4205 0.0 85.28223122790523 264001606.0 94.18 0.560096 62271653780.0 0.9724 560658426.0 78.69776654312884 31.985000000000003 98.21741358113411 1173_GZ1 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_GZ1_T1_RNA_SLD_01 tRNA 1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2 1173_GZ1 clinical 1749 2 0 7 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2/1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2.summary.json
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.56 0.85 0.0 0.0 0.01 0.03 1.49 4.39 126.7 117.0 630378555.0 9999000000.0 0.09 Yes 0.633048 0.743488 0.439763 0.02886 0.97114 0.041253 0.947896 0.006079 0.0 558.105332 0.9742 4686734.0 157707626.0 244.0 590787476.0 13654111.0 313735638.0 330981188.0 120.04191775047039 122 82.5816568581307 9.090909090909092 53.0 295393738.0 120.04191775047039 122 82.5816568581307 9.090909090909092 53.0 295393738.0 126.7 98.40767172931743 290690100.0 272.254292 133 0.442452 97.7604 0.0 89.66314675395431 282729065.0 95.71 0.532583 68954177514.0 0.973179 590787476.0 69.24443616666667 25.2205 98.46457933333333 1173_NWE s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_NWE_T1_RNA_SLD_01 tRNA 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1 1173_NWE clinical 2290 1 38 245 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 1173_OHF 1173_OHF_T1_RNA_SLD_01 tRNA 1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1 1173_OHF clinical 11 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1/1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.27 0.47 0.0 0.0 0.01 0.01 1.06 3.36 112.1 106.0 291940231.0 9999000000.0 0.65 Yes 0.599514 0.738118 0.48114 0.040143 0.959857 0.049111 0.935337 0.008069 0.0 340.054575 0.974278 4693910.0 112237018.0 171.0 461947406.0 11771296.0 224187033.0 239685830.0 110.4998501799142 107 76.127371836837 9.090909090909092 54.0 230973703.0 110.4998501799142 107 76.127371836837 9.090909090909092 54.0 230973703.0 112.1 98.14862863414369 226697522.0 140.024077 108 0.485054 97.3302 0.0 86.16597103738806 218213184.0 94.48 0.54448 49590101294.0 0.972973 461947406.0 82.74845522581028 23.3903 98.14067886614029 1173_PCB s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_PCB_T1_RNA_SLD_01 tRNA 1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1 1173_PCB clinical 515 1 4 19 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
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