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Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/b2d4dc3e12e73583e2fb9edaead6fa/patient_id_list.txt
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==> STAGING COMPLETE (9 inputs)
=== Fusion mode ===
Loading test...
244540 rows
Loading truth...
214 rows
Test after filters: 20800 rows
Truth after filters: 214 rows
Patient IDs in list: 76
In test: 40, in truth: 6, both: 6
NPA catalog:
definition: filtered primary truth FUSION_ID_norm union filtered test FUSION_ID_norm
|M| unique fusion events: 5
primary truth IDs=5, test IDs=83, overlap=4, truth-only=1, test-only=79
patient-fusion matrix cells: 76 x 5 = 380
alternative confirmation IDs=0 (not added to M; used only for adjudicated NPA reference)
NPA counts: primary neg_agree=373, neg_denom=374, npa_fp=1; adjudicated neg_agree=373, neg_denom=374, npa_fp=1
Wrote fusion_adjudication_status.tsv (6 main + 93 fp_audit rows; fp original=93, adjudicated FP=93, TP_rescued=0)
Wrote fusion_adjudication_summary.tsv
Wrote fusion_adjudication_summary_long.tsv
Wrote fusion_adjudication_report.txt
Wrote fusion_adjudication_20260606_214342.log