File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/8b70bfee37aeeafc41bf3fff89c5c7/.command.sh
Size
377 bytes
Task
RECALL:COLLECT_QC_METRICS (qc)
Attempt

Content

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#!/bin/bash -euo pipefail
collect_qc_metrics.py \
    --discovered discovered_outputs.tsv \
    --manifest analysis_manifest.tsv \
    --output qc_metrics.tsv \
    --missing-audit qc_missing_or_unreadable.tsv

cat <<-END_VERSIONS > versions.yml
"RECALL:COLLECT_QC_METRICS":
    python: $(python --version 2>&1 | sed 's/Python //')
    collect_qc_metrics: "1.0.0"
END_VERSIONS