.command.sh - Workdir - RECALL:EXPORT_DISCREPANT_CALLS (discrepancies)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/0fe100b6f9e81e74c64a75183e7a1b/.command.sh
Size: 439 bytes
Task: RECALL:EXPORT_DISCREPANT_CALLS (discrepancies)
Attempt

Content

#!/bin/bash -euo pipefail
export_discrepant_calls.py \
    --status fusion_adjudication_status.tsv \
    --test-unfiltered test_harmonized_calls.tsv \
    --truth truth_harmonized_calls.tsv \
    --manifest analysis_manifest.tsv \
    --output-dir discrepancies

cat <<-END_VERSIONS > versions.yml
"RECALL:EXPORT_DISCREPANT_CALLS":
    python: $(python --version 2>&1 | sed 's/Python //')
    export_discrepant_calls: "1.0.0"
END_VERSIONS