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Filename
metadata_qc.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/44c7d181b8397ef2a909bcd2b44cf8/metadata_qc.tsv
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108.4 KB
Task
RECALL:EXTRACT_AIH_QC_METRICS (aih-qc)
Attempt

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experiment specimen_id specimen_source dspe_ticket specimen_type form_factor raw_cancer_type normalized_cancer_type raw_cancer_subtype raw_cancer_stage sex age specimen_location source_id lot specimen_failed sample_id sample_type extraction_method sample_location sample_barcode extraction_conc sample_volume_remaining dv200 din rin extraction_plate extraction_well sample_reserved sample_failed sample_failure_notes library_id library_input_mass library_volume library_conc library_plate library_well ratio_sample_secondary_sample library_failed library_failure_notes sequencing_library_id run_name lane loading_ratio seq_library_failed seq_library_failure_notes patient_id flowcell_id RAW_READS READS FRAC_UNMAPPED UNIQUE_READS FRAC_DUPES FRAC_READS_ON_TARGET FRAC_READS_OFF_TARGET N_Q30 MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT30X FRAC_BASES_GT100X GC_BIAS FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN PCT_MITO_EST_COUNTS PCT_RIBO_EST_COUNTS PCT_HK_EST_COUNTS PCT_MALE_EST_COUNTS PCT_HK_TPM PCT_MALE_TPM IS_CONTAMINATED CONTAMINATION_PCT TOTAL_READS EXPECTED_DISTINCT SUMMED_MEDIAN SUMMED_MEAN PERCENT_DUPLICATION PCT_RIBOSOMAL_BASES PCT_MRNA_BASES PROPER_PAIRS_PERCENT UNIQUELY_MAPPED_PERCENT PCT_DUPLICATION AFTER_FILTERING_Q30_RATE AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS AFTER_FILTERING_GC_CONTENT PCT_SURVIVING PCT_ADAPTER experiment_qc harmonization_path input_path SAMPLE_QC
dev_rna_exp0016 1173_9C altera_exact 1173 clinical patient ovary Ovarian 51 unknown False 1173_9C_T1_RNA_SLD_01 tRNA altera_inhouse ssf 51.10 38.00 36.79 AIH_Ext13_RNA H05 False dev_rna_exp0016_lib_s56 200.00 80.97 dev_rna_exp0016 H07 False 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_9C A23T55JLT4 351448728 588455546.0 0.007726 291507724.0 0.504622 0.938669 0.045735 0.973144 424.876729 190.0 0.739943 0.611956 0.0 112.9 107.0 0.01 0.76 0.47 0.0 0.72 0.0 No 0.0 9999000000.0 387745605.0 112 155.43559 0.508551 0.0 97.38289999999999 84.63507922902441 94.18 24.729699999999998 0.971871 63784953000.0 588455546.0 0.577948 98.07592433333333 81.27013483333333 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_BEE altera_exact 1173 clinical patient head and neck Head And Neck 60 unknown False 1173_BEE_T1_RNA_SLD_01 tRNA altera_inhouse ssf 63.60 38.00 36.99 AIH_Ext13_RNA F05 False dev_rna_exp0016_lib_s54 200.00 68.70 dev_rna_exp0016 F07 False 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_BEE A23T55JLT4 287031731 565174502.0 0.007911 277994044.0 0.508127 0.931567 0.052349 0.974775 396.627584 189.0 0.73208 0.604431 0.0 111.1 105.0 0.01 1.95 0.42 0.0 0.68 0.0 No 0.0 9999000000.0 381735119.0 106 140.39367 0.512179 0.0 97.01429999999999 83.0455095872516 93.29 25.918799999999997 0.973739 60317899730.0 565174502.0 0.534836 98.45157189258633 82.81798903271778 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_C31 altera_exact 1173 clinical patient crc Colorectal 67 unknown False 1173_C31_T1_RNA_SLD_01 tRNA altera_inhouse ssf 83.30 35.00 68.15 AIH_Ext12_RNA E01 False dev_rna_exp0016_lib_s64 100.00 105.65 dev_rna_exp0016 H08 False 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_C31 A23T55JLT4 155722141 305780254.0 0.008182 188320050.0 0.384133 0.946597 0.040118 0.973775 280.961851 119.0 0.690022 0.532678 0.0 113.5 106.0 0.02 1.08 0.52 0.0 0.78 0.0 No 0.0 9999000000.0 380684528.0 112 166.633973 0.387301 0.0 97.53500000000001 85.11820451406214 93.94 16.517699999999998 0.972583 33197572520.0 305780254.0 0.561282 98.18136715703132 79.7239754750097 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_C31 altera_exact 1173 clinical patient crc Colorectal 67 unknown False 1173_C31_T1_RNA_SLD_01 tRNA altera_inhouse ssf 83.30 35.00 68.15 AIH_Ext12_RNA E01 False dev_rna_exp0016_lib_s05 200.00 102.47 dev_rna_exp0016 E01 False 1173_C31_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_C31 A23T55JLT4 104332125 205524044.0 0.007537 136263251.0 0.336996 0.950344 0.038289 0.974063 203.373336 82.0 0.649773 0.46125 0.0 112.4 106.0 0.03 1.15 0.52 0.0 0.77 0.0 No 0.0 9990000000.0 333266629.0 110 164.055232 0.339555 0.0 97.6364 85.49812556000359 94.35 13.9017 0.972983 22206262639.0 205524044.0 0.552498 98.49509151663499 80.1739109598314 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_CH0 altera_exact 1173 clinical patient head and neck Head And Neck 42 unknown False 1173_CH0_T1_RNA_SLD_01 tRNA altera_inhouse ssf 19.20 38.00 30.8 AIH_Ext13_RNA B03 False dev_rna_exp0016_lib_s93 100.00 39.78 dev_rna_exp0016 E12 False 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_CH0 A23T55JLT4 175742467 345689872.0 0.00769 136645184.0 0.604717 0.923306 0.057241 0.973884 181.216951 69.0 0.634378 0.424815 0.0 109.0 104.0 0.0 0.64 0.35 0.0 0.59 0.0 No 0.0 9999000000.0 120488245.0 106 132.691708 0.609403 0.0 97.10069999999999 84.38571633086504 94.14 32.014199999999995 0.972736 36413453121.0 345689872.0 0.58259 98.3512630444638 85.24147012230118 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_CH0 altera_exact 1173 clinical patient head and neck Head And Neck 42 unknown False 1173_CH0_T1_RNA_SLD_01 tRNA altera_inhouse ssf 19.20 38.00 30.8 AIH_Ext13_RNA B03 False dev_rna_exp0016_lib_s34 200.00 52.89 dev_rna_exp0016 B05 False 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_CH0 A23T55JLT4 33722075 66507862.0 0.007418 48992977.0 0.263351 0.944001 0.045929 0.974471 67.405151 23.0 0.452268 0.183801 0.0 108.5 104.0 0.0 0.72 0.36 0.0 0.58 0.0 No 0.0 9999000000.0 118783467.0 105 129.286834 0.265319 0.0 97.0213 85.10028632464399 94.42 12.6036 0.973398 6952964936.0 66507862.0 0.570444 98.61175802497326 86.59367194930917 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_CI9 altera_exact 1173 clinical patient skin Skin 58 unknown False 1173_CI9_T1_RNA_SLD_01 tRNA altera_inhouse ssf 48.10 38.00 33.84 AIH_Ext13_RNA E04 False dev_rna_exp0016_lib_s45 200.00 65.97 dev_rna_exp0016 E06 False 1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_CI9 A23T55JLT4 248545138 488992458.0 0.007908 228075343.0 0.533581 0.930995 0.05205 0.9738 302.784505 134.0 0.698164 0.552085 0.0 103.1 98.0 0.01 0.73 0.48 0.0 0.71 0.0 No 0.0 9999000000.0 261764196.0 100 125.635952 0.537834 0.0 97.3732 85.48055828433688 94.66 21.984 0.97277 49487821562.0 488992458.0 0.56149 98.37095626469265 87.57778255151383 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_CRL altera_exact 1173 clinical patient ovary Ovarian 45 unknown False 1173_CRL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 31.50 35.00 55.24 AIH_Ext12_RNA C01 False dev_rna_exp0016_lib_s03 200.00 89.12 dev_rna_exp0016 C01 False 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_CRL A23T55JLT4 490051387 590822936.0 0.006835 324856000.0 0.450164 0.941777 0.045791 0.974157 504.562545 228.0 0.730915 0.621523 0.0 116.9 109.0 0.03 1.19 0.48 0.0 0.7 0.0 No 0.0 9999000000.0 595641379.0 114 180.998074 0.453262 0.0 97.4098 87.34741872437847 94.87 23.5168 0.973151 65397379211.0 590822936.0 0.535085 98.47048933333333 76.48330116666666 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_CRL altera_exact 1173 clinical patient ovary Ovarian 45 unknown False 1173_CRL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 31.50 35.00 55.24 AIH_Ext12_RNA C01 False dev_rna_exp0016_lib_s62 100.00 77.41 dev_rna_exp0016 F08 False 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_CRL A23T55JLT4 415674567 589335522.0 0.00763 322659394.0 0.452503 0.941468 0.044595 0.973214 513.796496 238.0 0.734139 0.626474 0.0 122.7 115.0 0.01 1.12 0.47 0.0 0.7 0.0 No 0.0 9999000000.0 500714967.0 122 202.848191 0.455982 0.0 97.3845 87.29748884300471 94.74 24.990399999999998 0.97201 67376779163.0 589335522.0 0.543841 98.22258699999999 73.51093516666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_CRX altera_exact 1173 clinical patient crc Colorectal 69 unknown False 1173_CRX_T1_RNA_SLD_01 tRNA altera_inhouse ssf 36.30 38.00 43.7 AIH_Ext13_RNA B02 False dev_rna_exp0016_lib_s85 100.00 54.48 dev_rna_exp0016 E11 False 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_CRX A23T55JLT4 336474539 587312938.0 0.007571 262141442.0 0.55366 0.935239 0.047799 0.971501 390.284329 168.0 0.702116 0.58032 0.0 118.5 113.0 0.01 1.41 0.56 0.0 0.91 0.0 No 0.0 9999000000.0 263662307.0 120 177.426406 0.557883 0.0 97.4339 85.76513670167232 94.54 30.6734 0.970054 66213049970.0 587312938.0 0.572619 97.88548966666667 77.68487383333334 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_CRX altera_exact 1173 clinical patient crc Colorectal 69 unknown False 1173_CRX_T1_RNA_SLD_01 tRNA altera_inhouse ssf 36.30 38.00 43.7 AIH_Ext13_RNA B02 False dev_rna_exp0016_lib_s26 200.00 72.43 dev_rna_exp0016 B04 False 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_CRX A23T55JLT4 11568905 22714550.0 0.006695 19231394.0 0.153345 0.953325 0.038767 0.973317 27.623626 9.0 0.255636 0.058108 0.0 110.5 105.0 0.02 1.56 0.58 0.0 0.89 0.0 No 0.0 9999000000.0 74447018.0 108 149.612272 0.154378 0.0 97.5348 85.65014097987014 94.66 6.11056 0.972137 2415931291.0 22714550.0 0.559629 98.17069981990517 83.50603190189564 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_D6K altera_exact 1173 clinical patient sarcoma Sarcoma 74 unknown False 1173_D6K_T1_RNA_SLD_01 tRNA altera_inhouse ssf 71.30 38.00 70.35 AIH_Ext13_RNA A01 False dev_rna_exp0016_lib_s17 200.00 87.71 dev_rna_exp0016 A03 False 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_D6K A23T55JLT4 605243290 590667656.0 0.006082 296604742.0 0.497848 0.948554 0.039333 0.973936 492.601981 189.0 0.695854 0.586123 0.0 122.8 113.0 0.01 1.26 0.72 0.0 1.03 0.0 No 0.0 9999000000.0 619116352.0 130 290.758483 0.500895 0.0 98.1117 89.74477798169765 95.77 29.0329 0.972962 67686376934.0 590667656.0 0.538019 98.44460933333333 71.241249 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_D6K altera_exact 1173 clinical patient sarcoma Sarcoma 74 unknown False 1173_D6K_T1_RNA_SLD_01 tRNA altera_inhouse ssf 71.30 38.00 70.35 AIH_Ext13_RNA A01 False dev_rna_exp0016_lib_s76 100.00 99.96 dev_rna_exp0016 D10 False 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_D6K A23T55JLT4 779631836 589258688.0 0.006629 308665272.0 0.47618 0.949072 0.038273 0.973212 534.110314 213.0 0.705414 0.59991 0.0 130.1 121.0 0.01 1.17 0.71 0.0 1.04 0.0 No 0.0 9999000000.0 670479403.0 148 362.430468 0.479358 0.0 98.0766 90.2222625976867 95.76 28.3174 0.97213 69955478031.0 589258688.0 0.542973 98.20978133333334 66.67939233333333 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_DSO altera_exact 1173 clinical patient crc Colorectal 53 unknown False 1173_DSO_T1_RNA_SLD_01 tRNA altera_inhouse ssf 96.00 35.00 56.96 AIH_Ext12_RNA A01 False dev_rna_exp0016_lib_s01 200.00 87.05 dev_rna_exp0016 A01 False 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_DSO A23T55JLT4 605745434 589665710.0 0.006802 301648174.0 0.488442 0.941089 0.045614 0.972794 430.049347 172.0 0.715749 0.586417 0.0 107.2 100.0 0.03 1.13 0.47 0.0 0.73 0.0 No 0.0 9999000000.0 499237738.0 104 141.609761 0.491787 0.0 97.5558 78.05732514788147 91.64 20.3962 0.971639 61143325554.0 589665710.0 0.577897 98.27761833333334 83.4248075 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_DSO altera_exact 1173 clinical patient crc Colorectal 53 unknown False 1173_DSO_T1_RNA_SLD_01 tRNA altera_inhouse ssf 96.00 35.00 56.96 AIH_Ext12_RNA A01 False dev_rna_exp0016_lib_s60 100.00 92.90 dev_rna_exp0016 D08 False 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_DSO A23T55JLT4 210385749 412555804.0 0.007692 233472998.0 0.434081 0.943425 0.042983 0.973641 361.11799 136.0 0.694491 0.551368 0.0 118.9 112.0 0.02 1.0 0.46 0.0 0.73 0.0 No 0.0 9999000000.0 397191951.0 119 174.89882599999999 0.437446 0.0 97.4079 78.38631414592541 91.42 23.0688 0.972316 46420963129.0 412555804.0 0.582194 98.04746898517351 76.2783925540508 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_F0Y altera_exact 1173 clinical patient crc Colorectal 63 unknown False 1173_F0Y_T1_RNA_SLD_01 tRNA altera_inhouse ssf 22.70 38.00 38.42 AIH_Ext13_RNA A02 False dev_rna_exp0016_lib_s84 100.00 21.05 dev_rna_exp0016 D11 False 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_F0Y A23T55JLT4 292908053 573354668.0 0.008174 136583482.0 0.761782 0.90516 0.060525 0.972815 175.863305 63.0 0.611502 0.410271 0.0 109.4 104.0 0.03 1.38 0.5 0.0 0.79 0.0 No 0.0 9999000000.0 105863408.0 109 152.666348 0.76806 0.0 97.41109999999999 77.86016335406175 91.67 43.2755 0.971351 61064529257.0 573354668.0 0.583445 97.87280720479201 83.86123460388438 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_F0Y altera_exact 1173 clinical patient crc Colorectal 63 unknown False 1173_F0Y_T1_RNA_SLD_01 tRNA altera_inhouse ssf 22.70 38.00 38.42 AIH_Ext13_RNA A02 False dev_rna_exp0016_lib_s25 200.00 35.27 dev_rna_exp0016 A04 False 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_F0Y A23T55JLT4 383882668 590333160.0 0.00661 191598689.0 0.67544 0.926754 0.052882 0.974519 248.26066 102.0 0.667116 0.504511 0.0 104.2 100.0 0.06 1.55 0.51 0.0 0.78 0.0 No 0.0 9999000000.0 155202698.0 103 139.148113 0.679934 0.0 97.6362 79.67724812718085 92.42 35.157500000000006 0.973484 60568427900.0 590333160.0 0.565191 98.38886 87.38042416666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_FM altera_exact 1173 clinical patient crc Colorectal 77 unknown False 1173_FM_T1_RNA_SLD_01 tRNA altera_inhouse ssf 130.00 38.00 52.77 AIH_Ext13_RNA C02 False dev_rna_exp0016_lib_s27 200.00 37.21 dev_rna_exp0016 C04 False 1173_FM_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_FM A23T55JLT4 495719859 587515956.0 0.008061 205302872.0 0.650558 0.922207 0.054726 0.967798 256.450048 85.0 0.645898 0.472441 0.0 100.5 96.0 0.03 0.86 0.57 0.0 0.87 0.0 No 0.0 9999000000.0 264911845.0 102 142.106951 0.655844 0.0 97.5002 83.4950666652403 94.19 27.094 0.966374 58307003602.0 587515956.0 0.603862 97.919326 89.08942833333333 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_FM altera_exact 1173 clinical patient crc Colorectal 77 unknown False 1173_FM_T1_RNA_SLD_01 tRNA altera_inhouse ssf 130.00 38.00 52.77 AIH_Ext13_RNA C02 False dev_rna_exp0016_lib_s86 100.00 28.47 dev_rna_exp0016 F11 False 1173_FM_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_FM A23T55JLT4 371342743 585852312.0 0.009489 177857206.0 0.696413 0.912235 0.05651 0.971601 228.123562 65.0 0.61202 0.425654 0.0 107.2 102.0 0.01 0.72 0.54 0.0 0.87 0.0 No 0.0 9999000000.0 156135258.0 112 166.473363 0.703084 0.0 97.4311 83.00165404403546 93.76 36.2158 0.969828 61506129787.0 585852312.0 0.616696 97.642052 85.25974183333334 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_FWA altera_exact 1173 clinical patient crc Colorectal unknown False 1173_FWA_T1_RNA_SLD_01 tRNA altera_inhouse ssf 5.39 35.00 47.02 AIH_Ext12_RNA C02 False dev_rna_exp0016_lib_s70 100.00 3.18 dev_rna_exp0016 F09 False 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_FWA A23T55JLT4 165299 19646.0 0.507279 12531.0 0.36216 0.013487 0.191206 0.927071 0.00018 0.0 0.0 0.0 0.0 104.9 31.0 0.0 0.0 0.0 0.0 0.0 0.0 Skipped 9999000000.0 11470.0 32 32.569169 0.735021 0.1298 21.8668 1.87358942079775 7.18 32.5785 0.854706 1436380.0 19646.0 0.716355 5.942564685811772 50.867518859763216 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_FWA altera_exact 1173 clinical patient crc Colorectal unknown False 1173_FWA_T1_RNA_SLD_01 tRNA altera_inhouse ssf 5.39 35.00 47.02 AIH_Ext12_RNA C02 False dev_rna_exp0016_lib_s11 200.00 69.57 dev_rna_exp0016 C02 False 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_FWA A23T55JLT4 394768934 588300466.0 0.007892 291111463.0 0.505165 0.93838 0.045673 0.973713 461.920314 216.0 0.730312 0.614384 0.0 124.1 116.0 0.02 1.01 0.57 0.0 0.88 0.0 Yes 0.0 9999000000.0 325520584.0 125 199.608052 0.509184 0.0 97.72279999999999 84.54996001829657 93.95 27.634999999999998 0.97233 67939895444.0 588300466.0 0.568111 98.05007766666667 72.63238116666668 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_G2E altera_exact 1173 clinical patient esophageal Esophageal 54 unknown False 1173_G2E_T1_RNA_SLD_01 tRNA altera_inhouse ssf 15.30 35.00 24.61 AIH_Ext12_RNA H02 False dev_rna_exp0016_lib_s16 200.00 30.80 dev_rna_exp0016 H02 False 1173_G2E_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_G2E A23T55JLT4 400365841 587719940.0 0.009399 197601297.0 0.663783 0.910111 0.061933 0.972217 245.879404 92.0 0.66057 0.486401 0.0 102.9 99.0 0.01 0.87 0.36 0.0 0.56 0.0 No 0.0 9999000000.0 171775133.0 100 121.590164 0.670082 0.0 97.5602 80.8108672380387 93.03 29.614400000000003 0.970767 59177745229.0 587719940.0 0.591708 97.95332333333333 88.55621983333334 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_G2E altera_exact 1173 clinical patient esophageal Esophageal 54 unknown False 1173_G2E_T1_RNA_SLD_01 tRNA altera_inhouse ssf 15.30 35.00 24.61 AIH_Ext12_RNA H02 False dev_rna_exp0016_lib_s75 100.00 24.40 dev_rna_exp0016 C10 False 1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_G2E A23T55JLT4 288402913 563933476.0 0.010177 146822289.0 0.739646 0.898437 0.062474 0.973325 185.148496 68.0 0.625787 0.425082 0.0 106.9 102.0 0.01 0.83 0.35 0.0 0.55 0.0 No 0.0 9999000000.0 116101252.0 104 129.515789 0.747251 0.0 97.66890000000001 80.31056473692992 92.71 44.481 0.971764 58708659408.0 563933476.0 0.587933 97.76833911521553 86.02678572806232 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_GFO altera_exact 1173 clinical patient lung Lung 71 unknown False 1173_GFO_T1_RNA_SLD_01 tRNA altera_inhouse ssf 27.30 35.00 30.84 AIH_Ext12_RNA F02 False dev_rna_exp0016_lib_s73 100.00 23.53 dev_rna_exp0016 A10 False 1173_GFO_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_GFO A23T55JLT4 247132016 483494574.0 0.014371 142051207.0 0.706199 0.888671 0.062415 0.973096 189.170549 81.0 0.672055 0.453904 0.0 116.5 111.0 0.0 0.53 0.28 0.0 0.46 0.0 No 0.0 9999000000.0 122977893.0 114 147.04558 0.716496 0.0 97.0907 82.02470069911524 92.53 44.0796 0.971514 53808820294.0 483494574.0 0.581897 97.82111234021576 80.30816007263097 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_GFO altera_exact 1173 clinical patient lung Lung 71 unknown False 1173_GFO_T1_RNA_SLD_01 tRNA altera_inhouse ssf 27.30 35.00 30.84 AIH_Ext12_RNA F02 False dev_rna_exp0016_lib_s14 200.00 39.32 dev_rna_exp0016 F02 False 1173_GFO_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_GFO A23T55JLT4 296473801 580907912.0 0.012803 190438066.0 0.672172 0.900445 0.060502 0.973341 258.787034 117.0 0.713942 0.534993 0.0 115.8 112.0 0.01 0.56 0.29 0.0 0.47 0.0 No 0.0 9999000000.0 168810340.0 115 145.837568 0.680889 0.0 97.1408 82.40827201039835 92.84 38.8177 0.971927 64465189829.0 580907912.0 0.578816 97.96951872991974 80.82631034908883 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_GXL altera_exact 1173 clinical patient prostate Prostate 77 unknown False 1173_GXL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 68.70 38.00 35.97 AIH_Ext13_RNA E02 False dev_rna_exp0016_lib_s29 200.00 45.91 dev_rna_exp0016 E04 False 1173_GXL_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_GXL A23T55JLT4 413791225 589774004.0 0.007008 215605405.0 0.634427 0.924692 0.056137 0.972688 287.271239 128.0 0.71624 0.550842 0.0 106.4 101.0 0.01 0.79 0.41 0.0 0.6 0.0 No 0.0 9999000000.0 184090292.0 103 130.423349 0.638905 0.0 97.2764 86.38190267055907 94.89 29.750100000000003 0.97152 61003569397.0 589774004.0 0.575572 98.29566733333334 85.2618215 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_GXL altera_exact 1173 clinical patient prostate Prostate 77 unknown False 1173_GXL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 68.70 38.00 35.97 AIH_Ext13_RNA E02 False dev_rna_exp0016_lib_s88 100.00 30.03 dev_rna_exp0016 H11 False 1173_GXL_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_GXL A23T55JLT4 288477360 565513486.0 0.007843 163378841.0 0.711097 0.911192 0.061659 0.9731 215.737406 92.0 0.67912 0.482577 0.0 112.7 107.0 0.01 0.74 0.41 0.0 0.63 0.0 No 0.0 9999000000.0 136330590.0 110 145.50452 0.716718 0.0 97.10029999999999 85.68993286533501 94.59 40.1817 0.971737 61298656806.0 565513486.0 0.579219 98.01696153902684 81.70290347914998 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_GZ1 altera_exact 1173 clinical patient lung Lung 77 unknown False 1173_GZ1_T1_RNA_SLD_01 tRNA altera_inhouse ssf 22.10 38.00 42.64 AIH_Ext13_RNA B01 False dev_rna_exp0016_lib_s18 200.00 68.93 dev_rna_exp0016 B03 False 1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_GZ1 A23T55JLT4 15652731 30843242.0 0.008081 25190386.0 0.183277 0.951152 0.038954 0.974395 36.868633 15.0 0.335974 0.081178 0.0 112.8 106.0 0.02 0.74 0.35 0.0 0.55 0.0 No 0.0 9999000000.0 89192228.0 109 155.121198 0.18477 0.0 97.43509999999999 85.65504437705944 94.5 7.84924 0.973383 3319470251.0 30843242.0 0.549746 98.52351643939961 81.61266554698985 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_GZ1 altera_exact 1173 clinical patient lung Lung 77 unknown False 1173_GZ1_T1_RNA_SLD_01 tRNA altera_inhouse ssf 22.10 38.00 42.64 AIH_Ext13_RNA B01 False dev_rna_exp0016_lib_s77 100.00 64.60 dev_rna_exp0016 E10 False 1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_GZ1 A23T55JLT4 285417018 560658426.0 0.009214 238437358.0 0.574719 0.928687 0.049646 0.973613 349.67774 187.0 0.766883 0.626353 0.0 115.1 108.0 0.01 0.68 0.34 0.0 0.54 0.0 Yes 0.04 9999000000.0 230091914.0 116 170.990581 0.580064 0.0 97.4205 85.28223122790523 94.18 31.985000000000003 0.9724 62271653780.0 560658426.0 0.560096 98.21741358113411 78.69776654312884 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_H2E altera_exact 1173 clinical patient lung Lung 78 unknown False 1173_H2E_T1_RNA_SLD_01 tRNA altera_inhouse ssf 30.00 35.00 54.89 AIH_Ext12_RNA H01 False dev_rna_exp0016_lib_s67 100.00 81.80 dev_rna_exp0016 C09 False 1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_H2E A23T55JLT4 419042007 588162284.0 0.008419 318970661.0 0.457683 0.937562 0.046913 0.971443 522.153515 250.0 0.77343 0.655745 0.0 128.2 119.0 0.01 0.76 0.36 0.0 0.54 0.0 No 0.0 9999000000.0 485980051.0 132 224.300163 0.461569 0.0 97.06620000000001 87.64318418565145 94.97 26.417099999999998 0.970164 69291577437.0 588162284.0 0.568572 98.02704733333333 68.78816016666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_H2E altera_exact 1173 clinical patient lung Lung 78 unknown False 1173_H2E_T1_RNA_SLD_01 tRNA altera_inhouse ssf 30.00 35.00 54.89 AIH_Ext12_RNA H01 False dev_rna_exp0016_lib_s08 200.00 102.31 dev_rna_exp0016 H01 False 1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_H2E A23T55JLT4 724062550 588655702.0 0.007767 321587233.0 0.453692 0.937917 0.047865 0.972028 490.612354 231.0 0.76732 0.644663 0.0 116.6 108.0 0.01 0.85 0.39 0.0 0.56 0.0 No 0.0 9999000000.0 559868144.0 113 172.892201 0.457244 0.0 97.1783 86.98362111025476 94.96 22.2878 0.970848 64661095579.0 588655702.0 0.569267 98.10928366666667 76.48590783333333 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_HOB altera_exact 1173 clinical patient crc Colorectal 41 unknown False 1173_HOB_T1_RNA_SLD_01 tRNA altera_inhouse ssf 115.00 38.00 57.01 AIH_Ext13_RNA D01 False dev_rna_exp0016_lib_s20 200.00 71.69 dev_rna_exp0016 D03 False 1173_HOB_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_HOB A23T55JLT4 663278038 589592558.0 0.007086 296539610.0 0.497043 0.940857 0.045054 0.97301 428.62589 162.0 0.704727 0.575523 0.0 109.8 103.0 0.02 1.36 0.67 0.0 0.92 0.0 Yes 0.0 9999000000.0 452480665.0 108 158.379354 0.50059 0.0 97.7963 83.26871703529042 93.87 23.2838 0.971824 62492101834.0 589592558.0 0.579844 98.26542633333334 82.33902333333334 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_HOB altera_exact 1173 clinical patient crc Colorectal 41 unknown False 1173_HOB_T1_RNA_SLD_01 tRNA altera_inhouse ssf 115.00 38.00 57.01 AIH_Ext13_RNA D01 False dev_rna_exp0016_lib_s79 100.00 88.03 dev_rna_exp0016 G10 False 1173_HOB_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_HOB A23T55JLT4 242810737 475785136.0 0.007809 248292868.0 0.478141 0.941314 0.043723 0.971888 366.578012 126.0 0.681046 0.538336 0.0 113.1 106.0 0.01 1.25 0.66 0.0 0.94 0.0 Yes 0.0 9999000000.0 348178125.0 113 170.451625 0.481904 0.0 97.7 82.44005031604749 93.45 22.095100000000002 0.970558 51486515866.0 475785136.0 0.589746 97.97448454678509 80.29416672789063 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_HRO altera_exact 1173 clinical patient pancreatic Pancreatic 57 unknown False 1173_HRO_T1_RNA_SLD_01 tRNA altera_inhouse ssf 19.10 38.00 45.53 AIH_Ext13_RNA D04 False dev_rna_exp0016_lib_s44 200.00 46.74 dev_rna_exp0016 D06 False 1173_HRO_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_HRO A23T55JLT4 402335540 589167450.0 0.007104 209367308.0 0.644639 0.92573 0.054279 0.973725 277.904608 136.0 0.728253 0.563851 0.0 105.1 100.0 0.01 0.66 0.3 0.0 0.44 0.0 Yes 0.0 9999000000.0 191835680.0 104 145.187281 0.649251 0.0 97.5587 83.37684930756187 93.59 29.092000000000002 0.972454 60359534937.0 589167450.0 0.570655 98.194575 86.80079333333333 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_IT6 altera_exact 1173 clinical patient skin Skin 47 unknown False 1173_IT6_T1_RNA_SLD_01 tRNA altera_inhouse ssf 68.00 38.00 44.91 AIH_Ext13_RNA D02 False dev_rna_exp0016_lib_s87 100.00 62.92 dev_rna_exp0016 G11 False 1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_IT6 A23T55JLT4 152920464 300330088.0 0.007467 156292265.0 0.479598 0.939626 0.046026 0.973806 212.946661 80.0 0.633264 0.461694 0.0 106.1 100.0 0.02 0.73 0.48 0.0 0.66 0.0 No 0.0 9999000000.0 191441011.0 102 135.372954 0.483206 0.0 97.47109999999999 85.12951870101571 94.76 20.5438 0.972604 30908046533.0 300330088.0 0.555541 98.19813520837866 86.26833194803804 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_IT6 altera_exact 1173 clinical patient skin Skin 47 unknown False 1173_IT6_T1_RNA_SLD_01 tRNA altera_inhouse ssf 68.00 38.00 44.91 AIH_Ext13_RNA D02 False dev_rna_exp0016_lib_s28 200.00 59.09 dev_rna_exp0016 D04 False 1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_IT6 A23T55JLT4 264914049 522531886.0 0.006605 200857801.0 0.615607 0.926219 0.056596 0.974822 257.032113 98.0 0.652194 0.496918 0.0 100.0 95.0 0.04 0.76 0.45 0.0 0.62 0.0 No 0.0 9999000000.0 188526454.0 95 121.195107 0.6197 0.0007999999999999999 97.2287 82.72359931160955 94.71 25.8525 0.973883 51518239701.0 522531886.0 0.535345 98.62290957623013 89.16346958254373 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_J3R altera_exact 1173 clinical patient ovary Ovarian 66 unknown False 1173_J3R_T1_RNA_SLD_01 tRNA altera_inhouse ssf 37.90 38.00 32.72 AIH_Ext13_RNA H02 False dev_rna_exp0016_lib_s91 100.00 28.30 dev_rna_exp0016 C12 False 1173_J3R_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_J3R A23T55JLT4 178696169 349997100.0 0.008098 118240962.0 0.662166 0.91286 0.06317 0.973368 139.606943 62.0 0.625984 0.391278 0.0 99.2 95.0 0.01 0.94 0.37 0.0 0.58 0.0 No 0.0 9999000000.0 95818199.0 97 116.46490500000002 0.667572 0.0 97.247 79.33340350901555 92.71 28.1632 0.972219 34217994764.0 349997100.0 0.553211 97.93077880701516 91.41630087212445 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_J3R altera_exact 1173 clinical patient ovary Ovarian 66 unknown False 1173_J3R_T1_RNA_SLD_01 tRNA altera_inhouse ssf 37.90 38.00 32.72 AIH_Ext13_RNA H02 False dev_rna_exp0016_lib_s32 200.00 44.61 dev_rna_exp0016 H04 False 1173_J3R_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_J3R A23T55JLT4 240179542 472800642.0 0.007054 165367285.0 0.650239 0.911346 0.068485 0.973767 185.365216 83.0 0.662302 0.460238 0.0 91.6 88.0 0.01 1.05 0.39 0.0 0.6 0.0 No 0.0 9999000000.0 148337795.0 88 103.402949 0.654859 0.0 97.1613 80.09720965686033 93.24 22.1564 0.972796 42878400987.0 472800642.0 0.554899 98.42650170429586 94.2198486663781 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_JIG altera_exact 1173 clinical patient skin Skin 45 unknown False 1173_JIG_T1_RNA_SLD_01 tRNA altera_inhouse ssf 17.50 38.00 59.07 AIH_Ext13_RNA G04 False dev_rna_exp0016_lib_s47 200.00 47.99 dev_rna_exp0016 G06 False 1173_JIG_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_JIG A23T55JLT4 28088428 55214792.0 0.027147 26712223.0 0.516213 0.856495 0.087392 0.972028 29.217332 7.0 0.241721 0.069592 0.0 89.1 82.0 0.07 0.8 0.29 0.0 0.45 0.0 No 0.0 9999000000.0 48283151.0 68 78.246507 0.530617 0.38630000000000003 78.40270000000001 18.71868401385835 62.92 18.433 0.969716 4292342862.0 55214792.0 0.554159 98.28743708975098 93.16191351114416 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_JLC altera_exact 1173 clinical patient ovary Ovarian 57 unknown False 1173_JLC_T1_RNA_SLD_01 tRNA altera_inhouse ssf 72.70 38.00 62.94 AIH_Ext13_RNA F01 False dev_rna_exp0016_lib_s81 100.00 92.90 dev_rna_exp0016 A11 False 1173_JLC_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_JLC A23T55JLT4 572840546 588698014.0 0.008387 341067582.0 0.420641 0.941763 0.04376 0.972834 574.575783 269.0 0.757426 0.650984 0.0 130.5 121.0 0.01 1.01 0.58 0.0 0.84 0.0 No 0.0 9999000000.0 646126443.0 138 255.97124199999996 0.424199 0.0 97.3463 86.8434428589989 94.6 24.8799 0.971588 69831525615.0 588698014.0 0.568365 98.11633566666667 67.05026666666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_JLC altera_exact 1173 clinical patient ovary Ovarian 57 unknown False 1173_JLC_T1_RNA_SLD_01 tRNA altera_inhouse ssf 72.70 38.00 62.94 AIH_Ext13_RNA F01 False dev_rna_exp0016_lib_s22 200.00 94.55 dev_rna_exp0016 F03 False 1173_JLC_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_JLC A23T55JLT4 745236894 589749792.0 0.007599 333996736.0 0.433664 0.941959 0.044624 0.973866 538.532128 250.0 0.752762 0.642427 0.0 121.9 113.0 0.01 1.07 0.61 0.0 0.87 0.0 No 0.0 9999000000.0 683574478.0 125 214.75244 0.436984 0.0 97.4225 86.839741755425 94.78 24.6756 0.972765 67297994833.0 589749792.0 0.565223 98.29163199999999 71.87668066666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_JXL altera_exact 1173 clinical patient skin Skin 44 unknown False 1173_JXL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 89.30 38.00 73.57 AIH_Ext13_RNA G01 False dev_rna_exp0016_lib_s23 200.00 71.35 dev_rna_exp0016 G03 False 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_JXL A23T55JLT4 270188602 531893406.0 0.006695 280201962.0 0.473199 0.942629 0.044663 0.97443 448.600396 143.0 0.65008 0.542818 0.0 120.3 111.0 0.09 1.51 0.46 0.0 0.66 0.0 No 0.0 9999000000.0 458852873.0 117 217.402423 0.476388 0.0024000000000000002 97.5403 81.83978694769385 94.45 26.880399999999998 0.973413 59532140161.0 531893406.0 0.519162 98.43002296595769 73.59188323569623 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_JXL altera_exact 1173 clinical patient skin Skin 44 unknown False 1173_JXL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 89.30 38.00 73.57 AIH_Ext13_RNA G01 False dev_rna_exp0016_lib_s82 100.00 101.61 dev_rna_exp0016 B11 False 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_JXL A23T55JLT4 401190922 589883692.0 0.006485 316818529.0 0.462914 0.945947 0.041978 0.973781 527.991711 180.0 0.668298 0.56822 0.0 126.7 117.0 0.06 1.43 0.46 0.0 0.67 0.0 No 0.0 9999000000.0 546444574.0 129 256.402082 0.465935 9.999999999999999e-05 97.8291 87.5072843464803 95.24 25.8822 0.972745 68416756955.0 589883692.0 0.528891 98.31394866666666 70.37200933333332 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_K3O altera_exact 1173 clinical patient prostate Prostate unknown False 1173_K3O_T1_RNA_SLD_01 tRNA altera_inhouse ssf 144.00 35.00 66.14 AIH_Ext12_RNA B01 False dev_rna_exp0016_lib_s61 100.00 29.33 dev_rna_exp0016 E08 False 1173_K3O_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_K3O A23T55JLT4 149937922 294192922.0 0.00976 110702001.0 0.623709 0.908749 0.065314 0.973335 129.868944 59.0 0.629519 0.373432 0.0 100.1 97.0 0.01 0.82 0.3 0.0 0.46 0.0 No 0.0 9999000000.0 95584731.0 97 112.366313 0.629857 0.0 96.7547 83.00155555693891 93.59 25.7011 0.971854 28910842485.0 294192922.0 0.564712 98.1049083766814 91.11930236034617 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_K3O altera_exact 1173 clinical patient prostate Prostate unknown False 1173_K3O_T1_RNA_SLD_01 tRNA altera_inhouse ssf 144.00 35.00 66.14 AIH_Ext12_RNA B01 False dev_rna_exp0016_lib_s02 200.00 40.21 dev_rna_exp0016 B01 False 1173_K3O_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_K3O A23T55JLT4 14445973 28389066.0 0.008155 22523975.0 0.206597 0.942379 0.047342 0.975025 26.917807 10.0 0.248786 0.054051 0.0 94.0 90.0 0.01 0.9 0.3 0.0 0.46 0.0 No 0.0 9999000000.0 62762443.0 90 102.550352 0.208295 0.0 96.9407 84.07217581374286 94.11 7.825699999999999 0.973825 2634023042.0 28389066.0 0.559511 98.25944572927003 93.52674617348377 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_K7E altera_exact 1173 clinical patient sarcoma Sarcoma 30 unknown False 1173_K7E_T1_RNA_SLD_01 tRNA altera_inhouse ssf 48.10 38.00 58.24 AIH_Ext13_RNA C01 False dev_rna_exp0016_lib_s78 100.00 62.87 dev_rna_exp0016 F10 False 1173_K7E_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_K7E A23T55JLT4 219067645 430250586.0 0.006923 191680581.0 0.554491 0.932139 0.052321 0.974564 252.906658 94.0 0.641231 0.490598 0.0 103.6 99.0 0.01 2.39 0.6 0.0 0.89 0.0 No 0.0 9999000000.0 207831911.0 99 125.799013 0.558356 0.0 97.1071 84.61748481280739 94.22 23.6768 0.973297 43687765058.0 430250586.0 0.542793 98.20039513365838 87.60505185510166 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_K7E altera_exact 1173 clinical patient sarcoma Sarcoma 30 unknown False 1173_K7E_T1_RNA_SLD_01 tRNA altera_inhouse ssf 48.10 38.00 58.24 AIH_Ext13_RNA C01 False dev_rna_exp0016_lib_s19 200.00 54.10 dev_rna_exp0016 C03 False 1173_K7E_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_K7E A23T55JLT4 314810355 590989950.0 0.005984 227336524.0 0.615329 0.927105 0.057339 0.974877 291.034733 108.0 0.655386 0.513055 0.0 100.5 95.0 0.01 2.48 0.59 0.0 0.87 0.0 Yes 0.0 9999000000.0 231236743.0 96 120.310212 0.619033 9.999999999999999e-05 97.1799 85.2274681117979 94.57 24.4253 0.97382 58679684459.0 590989950.0 0.535918 98.498325 88.9232885 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_KQG altera_exact 1173 clinical patient sarcoma Sarcoma 44 unknown False 1173_KQG_T1_RNA_SLD_01 tRNA altera_inhouse ssf 15.60 35.00 51.57 AIH_Ext12_RNA G01 False dev_rna_exp0016_lib_s66 100.00 99.64 dev_rna_exp0016 B09 False 1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_KQG A23T55JLT4 301661002 591207666.0 0.006246 314930595.0 0.46731 0.945603 0.042671 0.973436 510.096792 276.0 0.792008 0.67889 0.0 122.1 114.0 0.01 0.93 0.35 0.0 0.58 0.0 Yes 0.0 9999000000.0 503730907.0 129 230.345823 0.470247 0.0 97.603 88.5706524075922 95.39 27.914299999999997 0.972382 67922766288.0 591207666.0 0.546966 98.53461100000001 73.02811833333334 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_KQG altera_exact 1173 clinical patient sarcoma Sarcoma 44 unknown False 1173_KQG_T1_RNA_SLD_01 tRNA altera_inhouse ssf 15.60 35.00 51.57 AIH_Ext12_RNA G01 False dev_rna_exp0016_lib_s07 200.00 95.36 dev_rna_exp0016 G01 False 1173_KQG_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_KQG A23T55JLT4 148672125 293424850.0 0.005545 180994090.0 0.383167 0.950915 0.040095 0.973205 279.545826 135.0 0.729644 0.563023 0.0 114.9 106.0 0.01 1.03 0.36 0.0 0.59 0.0 No 0.0 9999000000.0 402704147.0 116 188.954667 0.385304 0.0 97.6912 88.12196057117072 95.46 17.1813 0.972276 32126507924.0 293424850.0 0.543003 98.68186453916631 77.75719759168035 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_KRT altera_exact 1173 clinical patient lung Lung 69 unknown False 1173_KRT_T1_RNA_SLD_01 tRNA altera_inhouse ssf 105.00 38.00 31.87 AIH_Ext13_RNA G05 False dev_rna_exp0016_lib_s55 200.00 4.39 dev_rna_exp0016 G07 False 1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_KRT A23T55JLT4 10758509 20603440.0 0.011666 3725974.0 0.819158 0.809913 0.125576 0.970453 3.914352 1.0 0.017297 0.002216 0.0 105.1 98.0 0.01 0.49 0.28 0.0 0.52 0.0 No 0.0 9999000000.0 3706642.0 99 120.22737900000001 0.828827 0.0 95.7903 70.50993639628325 90.38 39.6449 0.967929 2061557017.0 20603440.0 0.605383 95.75416072989296 85.51816055551936 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_KTN altera_exact 1173 clinical patient breast Breast unknown False 1173_KTN_T1_RNA_SLD_01 tRNA altera_inhouse ssf 25.90 35.00 47.52 AIH_Ext12_RNA A02 False dev_rna_exp0016_lib_s09 200.00 46.34 dev_rna_exp0016 A02 False 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_KTN A23T55JLT4 347602978 592305754.0 0.007198 210735746.0 0.644211 0.922254 0.057515 0.974754 264.381908 115.0 0.691604 0.526914 0.0 100.5 96.0 0.03 0.81 0.33 0.0 0.51 0.0 No 0.0 9999000000.0 194266469.0 98 126.178942 0.648882 0.0 97.6263 86.52871692248671 94.92 26.9912 0.97381 58777534428.0 592305754.0 0.540458 98.71762566666666 89.620495 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_KTN altera_exact 1173 clinical patient breast Breast unknown False 1173_KTN_T1_RNA_SLD_01 tRNA altera_inhouse ssf 25.90 35.00 47.52 AIH_Ext12_RNA A02 False dev_rna_exp0016_lib_s68 100.00 47.40 dev_rna_exp0016 D09 False 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_KTN A23T55JLT4 224574149 442110440.0 0.008137 182426653.0 0.587373 0.928795 0.051484 0.976242 241.253146 107.0 0.684907 0.51451 0.0 105.7 101.0 0.01 0.76 0.33 0.0 0.51 0.0 No 0.0 9999000000.0 175772744.0 104 139.966188 0.592192 0.0 97.5972 86.2628109544321 94.63 28.9549 0.975145 45903326029.0 442110440.0 0.54424 98.43306586458445 87.0998170853583 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_LAF altera_exact 1173 clinical patient lung Lung 46 unknown False 1173_LAF_T1_RNA_SLD_01 tRNA altera_inhouse ssf 24.10 38.00 27.34 AIH_Ext13_RNA A03 False dev_rna_exp0016_lib_s33 200.00 36.67 dev_rna_exp0016 A05 False 1173_LAF_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_LAF A23T55JLT4 46781141 91759492.0 0.015733 35979849.0 0.60789 0.87468 0.085197 0.972528 35.539485 11.0 0.309327 0.092247 0.0 83.9 80.0 0.03 0.72 0.3 0.0 0.46 0.0 No 0.0 9999000000.0 35973504.0 73 80.706292 0.617606 0.062200000000000005 84.9259 31.72916111043752 75.36 13.7873 0.97077 7177169805.0 91759492.0 0.568182 98.07316585117066 96.32052582898737 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_LAF altera_exact 1173 clinical patient lung Lung 46 unknown False 1173_LAF_T1_RNA_SLD_01 tRNA altera_inhouse ssf 24.10 38.00 27.34 AIH_Ext13_RNA A03 False dev_rna_exp0016_lib_s92 100.00 30.01 dev_rna_exp0016 D12 False 1173_LAF_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_LAF A23T55JLT4 81613010 159812694.0 0.012843 56347945.0 0.647413 0.893779 0.069795 0.969201 59.929275 23.0 0.446346 0.177003 0.0 90.4 87.0 0.01 0.68 0.32 0.0 0.48 0.0 No 0.0 9999000000.0 52965574.0 81 91.725498 0.655836 0.009899999999999999 88.6678 42.18368129308439 81.37 17.2195 0.967509 13622815855.0 159812694.0 0.57699 97.90883463310568 94.92283154364726 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_LQD altera_exact 1173 clinical patient skin Skin 62 unknown False 1173_LQD_T1_RNA_SLD_01 tRNA altera_inhouse ssf 69.30 38.00 53.65 AIH_Ext13_RNA D05 False dev_rna_exp0016_lib_s52 200.00 82.54 dev_rna_exp0016 D07 False 1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_LQD A23T55JLT4 448430593 590002200.0 0.007866 318776948.0 0.459702 0.942127 0.043314 0.973215 495.124392 226.0 0.724527 0.615593 0.0 118.2 111.0 0.02 1.09 0.45 0.0 0.68 0.0 No 0.0 9999000000.0 524508706.0 116 185.533371 0.463347 0.0 97.5654 86.65318336957395 94.97 23.580000000000002 0.972059 65830113710.0 590002200.0 0.543001 98.33370000000001 76.75399683333333 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_LV7 altera_exact 1173 clinical patient sarcoma Sarcoma 53 unknown False 1173_LV7_T1_RNA_SLD_01 tRNA altera_inhouse ssf 39.90 38.00 41.44 AIH_Ext13_RNA D03 False dev_rna_exp0016_lib_s95 100.00 90.45 dev_rna_exp0016 G12 False 1173_LV7_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_LV7 A23T55JLT4 339025373 586600068.0 0.007702 278886771.0 0.524571 0.937916 0.045884 0.973465 401.402623 160.0 0.685846 0.571628 0.0 110.8 105.0 0.0 0.49 0.64 0.0 0.95 0.0 No 0.0 9999000000.0 343127021.0 108 144.420853 0.528643 0.0 97.5963 86.39207734979372 94.76 25.231399999999997 0.972211 62674810890.0 586600068.0 0.562781 97.766678 82.48736166666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_LV7 altera_exact 1173 clinical patient sarcoma Sarcoma 53 unknown False 1173_LV7_T1_RNA_SLD_01 tRNA altera_inhouse ssf 39.90 38.00 41.44 AIH_Ext13_RNA D03 False dev_rna_exp0016_lib_s36 200.00 65.36 dev_rna_exp0016 D05 False 1173_LV7_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_LV7 A23T55JLT4 545996875 585569188.0 0.007795 282901793.0 0.516877 0.933828 0.050037 0.973353 384.983168 157.0 0.683802 0.569096 0.0 103.9 98.0 0.01 0.55 0.64 0.0 0.96 0.0 No 0.0 9999000000.0 388258665.0 99 128.798295 0.520938 0.0 97.44420000000001 85.83729228700206 94.62 21.4301 0.972008 59328852199.0 585569188.0 0.559538 97.59486466666667 86.13551066666668 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_M2F altera_exact 1173 clinical patient breast Breast 43 unknown False 1173_M2F_T1_RNA_SLD_01 tRNA altera_inhouse ssf 20.10 38.00 51.97 AIH_Ext13_RNA H04 False dev_rna_exp0016_lib_s48 200.00 78.69 dev_rna_exp0016 H06 False 1173_M2F_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_M2F A23T55JLT4 236584925 467330428.0 0.00608 202770699.0 0.566109 0.931804 0.054183 0.975619 258.780715 116.0 0.695496 0.52897 0.0 97.7 92.0 0.03 0.97 0.28 0.0 0.44 0.0 No 0.0 9999000000.0 216262817.0 93 118.832717 0.569572 9.999999999999999e-05 97.2452 86.34523927993104 95.06 19.9057 0.974764 45241116056.0 467330428.0 0.537735 98.76589305087803 89.12734718832994 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_M4Y altera_exact 1173 clinical patient esophageal Esophageal 63 unknown False 1173_M4Y_T1_RNA_SLD_01 tRNA altera_inhouse ssf 25.30 38.00 30.69 AIH_Ext13_RNA F04 False dev_rna_exp0016_lib_s46 200.00 13.52 dev_rna_exp0016 F06 False 1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_M4Y A23T55JLT4 152303812 295889206.0 0.010447 69815439.0 0.764049 0.855646 0.10008 0.970573 69.987267 20.0 0.428656 0.189264 0.0 94.1 91.0 0.01 1.09 0.3 0.0 0.5 0.0 No 0.0 9999000000.0 65381299.0 92 105.192951 0.772115 0.0 95.4794 74.88922482013112 91.65 28.4216 0.968717 27453426778.0 295889206.0 0.613194 97.13782016171729 92.99521964689892 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_M5U altera_exact 1173 clinical patient breast Breast 77 unknown False 1173_M5U_T1_RNA_SLD_01 tRNA altera_inhouse ssf 47.60 35.00 47.84 AIH_Ext12_RNA D02 False dev_rna_exp0016_lib_s12 200.00 64.84 dev_rna_exp0016 D02 False 1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_M5U A23T55JLT4 459330898 589805504.0 0.006958 280873270.0 0.523787 0.938367 0.047022 0.974276 397.73682 186.0 0.725504 0.601595 0.0 108.9 103.0 0.02 0.86 0.43 0.0 0.65 0.0 No 0.0 9999000000.0 347228422.0 107 149.556001 0.527457 0.0 97.3734 84.5221628713891 94.12 24.412 0.973139 62427126629.0 589805504.0 0.550145 98.30091733333333 83.58885766666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_M5U altera_exact 1173 clinical patient breast Breast 77 unknown False 1173_M5U_T1_RNA_SLD_01 tRNA altera_inhouse ssf 47.60 35.00 47.84 AIH_Ext12_RNA D02 False dev_rna_exp0016_lib_s71 100.00 62.86 dev_rna_exp0016 G09 False 1173_M5U_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_M5U A23T55JLT4 291926864 572460602.0 0.007488 239783156.0 0.581136 0.93505 0.047073 0.973589 343.38027 158.0 0.710961 0.578584 0.0 112.6 107.0 0.01 0.8 0.43 0.0 0.66 0.0 No 0.0 9999000000.0 228146487.0 112 160.955499 0.585521 0.0 97.3359 83.62627755378094 93.69 30.621199999999998 0.972358 62281003295.0 572460602.0 0.556751 98.04863350979579 81.2658027594199 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_MHK altera_exact 1173 clinical patient esophageal Esophageal 66 unknown False 1173_MHK_T1_RNA_SLD_01 tRNA altera_inhouse ssf 31.50 38.00 37.11 AIH_Ext13_RNA F03 False dev_rna_exp0016_lib_s38 200.00 63.65 dev_rna_exp0016 F05 False 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_MHK A23T55JLT4 467001291 588669030.0 0.009134 293638972.0 0.501181 0.930093 0.051595 0.973055 424.540386 211.0 0.746614 0.625537 0.0 113.9 108.0 0.01 1.0 0.36 0.0 0.6 0.0 No 0.0 9999000000.0 360663119.0 111 151.523899 0.505802 0.0 97.2985 82.80683857357351 93.51 29.695700000000002 0.971822 64183114648.0 588669030.0 0.553569 98.111505 81.42338649999999 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_N5V altera_exact 1173 clinical patient prostate Prostate 88 unknown False 1173_N5V_T1_RNA_SLD_01 tRNA altera_inhouse ssf 34.50 38.00 34.22 AIH_Ext13_RNA A05 False dev_rna_exp0016_lib_s49 200.00 80.94 dev_rna_exp0016 A07 False 1173_N5V_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_N5V A23T55JLT4 203663248 402035990.0 0.005258 195765111.0 0.513066 0.935777 0.053426 0.974872 250.112856 105.0 0.66787 0.509913 0.0 99.1 94.0 0.01 0.9 0.41 0.0 0.56 0.0 No 0.0 9999000000.0 238931848.0 94 114.55855700000001 0.515777 0.0 97.1015 86.36139869891448 94.75 20.3762 0.974031 39273037201.0 402035990.0 0.525393 98.70116330463314 90.00023804000219 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_NBF altera_exact 1173 clinical patient breast Breast 70 unknown False 1173_NBF_T1_RNA_SLD_01 tRNA altera_inhouse ssf 37.00 38.00 60.53 AIH_Ext13_RNA B05 False dev_rna_exp0016_lib_s50 200.00 63.89 dev_rna_exp0016 B07 False 1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_NBF A23T55JLT4 239310024 471579430.0 0.008058 232425031.0 0.507135 0.935728 0.047923 0.975109 316.011909 140.0 0.698218 0.55752 0.0 105.0 99.0 0.02 1.27 0.5 0.0 0.69 0.0 No 0.0 9999000000.0 303160188.0 100 132.956348 0.511255 9.999999999999999e-05 97.31490000000001 85.47098088384601 94.55 23.6338 0.974129 48033992545.0 471579430.0 0.524289 98.52897553509919 86.04426511611565 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_NFO altera_exact 1173 clinical patient breast Breast 68 unknown False 1173_NFO_T1_RNA_SLD_01 tRNA altera_inhouse ssf 41.80 38.00 28.14 AIH_Ext13_RNA C03 False dev_rna_exp0016_lib_s35 200.00 27.13 dev_rna_exp0016 C05 False 1173_NFO_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_NFO A23T55JLT4 324005525 589230716.0 0.008981 140204364.0 0.762055 0.879006 0.083248 0.973264 160.076522 59.0 0.616584 0.393854 0.0 99.8 95.0 0.01 0.55 0.26 0.0 0.44 0.0 No 0.0 9999000000.0 119616085.0 97 115.227345 0.768962 0.0 96.9147 82.79818141778883 93.88 34.0996 0.971946 58050122644.0 589230716.0 0.593262 98.20511933333333 90.26445366666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_NFO altera_exact 1173 clinical patient breast Breast 68 unknown False 1173_NFO_T1_RNA_SLD_01 tRNA altera_inhouse ssf 41.80 38.00 28.14 AIH_Ext13_RNA C03 False dev_rna_exp0016_lib_s94 100.00 20.88 dev_rna_exp0016 F12 False 1173_NFO_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_NFO A23T55JLT4 222466527 434487944.0 0.009783 98726812.0 0.772774 0.87566 0.081287 0.972506 115.719422 42.0 0.56523 0.315377 0.0 105.2 100.0 0.01 0.51 0.25 0.0 0.43 0.0 No 0.0 9999000000.0 82458225.0 102 123.611417 0.780409 0.0 96.6867 81.30625391480062 93.38 47.7167 0.970982 44428862502.0 434487944.0 0.594515 97.65243110034257 87.10699317924804 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_NMN altera_exact 1173 clinical patient ovary Ovarian 42 unknown False 1173_NMN_T1_RNA_SLD_01 tRNA altera_inhouse ssf 20.10 38.00 42.39 AIH_Ext13_RNA F02 False dev_rna_exp0016_lib_s89 100.00 89.50 dev_rna_exp0016 A12 False 1173_NMN_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_NMN A23T55JLT4 264024627 515542990.0 0.008824 250240209.0 0.514609 0.93193 0.04989 0.973102 362.707519 175.0 0.742464 0.603858 0.0 114.7 108.0 0.01 1.02 0.3 0.0 0.52 0.0 No 0.0 9999000000.0 278828175.0 111 147.219704 0.51919 0.0 97.1765 83.47841459677299 93.69 28.309800000000003 0.971741 56144590115.0 515542990.0 0.565723 97.63161032701696 80.21611957433046 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_NMN altera_exact 1173 clinical patient ovary Ovarian 42 unknown False 1173_NMN_T1_RNA_SLD_01 tRNA altera_inhouse ssf 20.10 38.00 42.39 AIH_Ext13_RNA F02 False dev_rna_exp0016_lib_s30 200.00 67.48 dev_rna_exp0016 F04 False 1173_NMN_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_NMN A23T55JLT4 273771686 535830628.0 0.008265 278883915.0 0.47953 0.931566 0.052555 0.972634 393.086696 197.0 0.751789 0.621881 0.0 110.2 104.0 0.01 1.16 0.33 0.0 0.56 0.0 Yes 0.0 9999000000.0 365493050.0 105 137.717266 0.483526 0.0 97.0342 83.28057301634615 93.75 22.261 0.971359 56493498549.0 535830628.0 0.561846 97.86085548671385 82.74106512241737 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_NWE altera_exact 1173 clinical patient ovary Ovarian 68 unknown False 1173_NWE_T1_RNA_SLD_01 tRNA altera_inhouse ssf 15.00 35.00 58.41 AIH_Ext12_RNA F01 False dev_rna_exp0016_lib_s06 200.00 91.75 dev_rna_exp0016 F01 False 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_NWE A23T55JLT4 647600390 591978278.0 0.005712 320990515.0 0.457766 0.947698 0.041768 0.974588 523.163817 218.0 0.735141 0.619375 0.0 120.3 110.0 0.03 1.56 0.57 0.0 0.84 0.0 Yes 0.06 9999000000.0 622728202.0 121 225.919617 0.460396 0.0 97.84049999999999 88.950424658331 95.73 22.689899999999998 0.973666 66643830778.0 591978278.0 0.533178 98.66304633333334 72.659117 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_NWE altera_exact 1173 clinical patient ovary Ovarian 68 unknown False 1173_NWE_T1_RNA_SLD_01 tRNA altera_inhouse ssf 15.00 35.00 58.41 AIH_Ext12_RNA F01 False dev_rna_exp0016_lib_s65 100.00 97.17 dev_rna_exp0016 A09 False 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_NWE A23T55JLT4 609856960 590787476.0 0.006079 330981188.0 0.439763 0.947896 0.041253 0.9742 558.105332 244.0 0.743488 0.633048 0.0 126.7 117.0 0.01 1.49 0.56 0.0 0.85 0.0 Yes 0.09 9999000000.0 630378555.0 133 272.254292 0.442452 0.0 97.7604 89.66314675395431 95.71 25.2205 0.973179 68954177514.0 590787476.0 0.532583 98.46457933333333 69.24443616666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_OHF altera_exact 1173 clinical patient lung Lung unknown False 1173_OHF_T1_RNA_SLD_01 tRNA altera_inhouse ssf 21.60 38.00 32.6 AIH_Ext13_RNA B04 False dev_rna_exp0016_lib_s42 200.00 6.33 dev_rna_exp0016 B06 False 1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_OHF A23T55JLT4 4457634 8725292.0 0.011375 6006273.0 0.311625 0.922297 0.06118 0.974758 6.725186 2.0 0.046703 0.005554 0.0 91.9 89.0 0.01 0.34 0.19 0.0 0.29 0.0 Skipped 9999000000.0 10154472.0 88 97.614747 0.31521 0.0 96.525 81.53110181006045 93.62 10.774799999999999 0.973611 789473218.0 8725292.0 0.572958 97.86909378383241 94.80204072384588 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_PCB altera_exact 1173 clinical patient ovary Ovarian 76 unknown False 1173_PCB_T1_RNA_SLD_01 tRNA altera_inhouse ssf 34.40 35.00 45.47 AIH_Ext12_RNA D01 False dev_rna_exp0016_lib_s04 200.00 85.65 dev_rna_exp0016 D01 False 1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_PCB A23T55JLT4 106769183 210238966.0 0.006975 135598308.0 0.355028 0.943424 0.045761 0.975009 184.431946 82.0 0.660305 0.458123 0.0 105.5 100.0 0.01 1.18 0.28 0.0 0.47 0.0 No 0.0 9999000000.0 268691964.0 99 124.97676099999998 0.357522 0.0 97.391 86.44894976095283 94.77 12.7453 0.973926 21370717959.0 210238966.0 0.53716 98.45489123954428 86.81749583117069 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_PCB altera_exact 1173 clinical patient ovary Ovarian 76 unknown False 1173_PCB_T1_RNA_SLD_01 tRNA altera_inhouse ssf 34.40 35.00 45.47 AIH_Ext12_RNA D01 False dev_rna_exp0016_lib_s63 100.00 68.70 dev_rna_exp0016 G08 False 1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_PCB A23T55JLT4 235349608 461947406.0 0.008069 239685830.0 0.48114 0.935337 0.049111 0.974278 340.054575 171.0 0.738118 0.599514 0.0 112.1 106.0 0.01 1.06 0.27 0.0 0.47 0.0 Yes 0.65 9999000000.0 291940231.0 108 140.024077 0.485054 0.0 97.3302 86.16597103738806 94.48 23.3903 0.972973 49590101294.0 461947406.0 0.54448 98.14067886614029 82.74845522581028 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_Q7O altera_exact 1173 clinical patient sarcoma Sarcoma 54 unknown False 1173_Q7O_T1_RNA_SLD_01 tRNA altera_inhouse ssf 31.40 38.00 39.33 AIH_Ext13_RNA G02 False dev_rna_exp0016_lib_s90 100.00 88.32 dev_rna_exp0016 B12 False 1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_Q7O A23T55JLT4 251971581 493511196.0 0.008361 262255556.0 0.468592 0.936207 0.048061 0.973594 393.833595 180.0 0.713204 0.591348 0.0 115.5 109.0 0.0 0.91 0.32 0.0 0.48 0.0 Yes 0.0 9999000000.0 369292620.0 115 164.260275 0.472543 0.0 97.0722 86.69074764366206 94.55 24.5197 0.972391 54888086477.0 493511196.0 0.53771 97.92993202673917 78.22505884106033 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_Q7O altera_exact 1173 clinical patient sarcoma Sarcoma 54 unknown False 1173_Q7O_T1_RNA_SLD_01 tRNA altera_inhouse ssf 31.40 38.00 39.33 AIH_Ext13_RNA G02 False dev_rna_exp0016_lib_s31 200.00 89.46 dev_rna_exp0016 G04 False 1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_Q7O A23T55JLT4 451227269 588976610.0 0.007609 305942307.0 0.480553 0.932608 0.052743 0.974058 443.105042 204.0 0.724513 0.607956 0.0 110.6 104.0 0.01 0.96 0.33 0.0 0.5 0.0 Yes 0.02 9999000000.0 466487892.0 108 148.09731 0.484237 0.0 97.0077 86.84217801043813 94.8 23.015 0.972951 63114306288.0 588976610.0 0.538251 98.16276833333333 81.28702833333334 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_QEV altera_exact 1173 clinical patient pancreatic Pancreatic unknown False 1173_QEV_T1_RNA_SLD_01 tRNA altera_inhouse ssf 73.10 38.00 33.19 AIH_Ext13_RNA H03 False dev_rna_exp0016_lib_s40 200.00 3.50 dev_rna_exp0016 H05 False 1173_QEV_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_QEV A23T55JLT4 10424476 19648442.0 0.012376 3266824.0 0.833736 0.782601 0.142963 0.968294 3.329371 1.0 0.012363 0.001467 0.0 108.4 103.0 0.0 0.47 0.25 0.0 0.51 0.0 Skipped 9999000000.0 4302976.0 106 129.64163 0.844184 9.999999999999999e-05 96.0068 76.26234334156997 91.69 43.6251 0.966076 2038011197.0 19648442.0 0.610859 94.2418688478922 83.83672714100929 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_QJL altera_exact 1173 clinical patient prostate Prostate 82 unknown False 1173_QJL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 37.50 38.00 58.23 AIH_Ext13_RNA E01 False dev_rna_exp0016_lib_s80 100.00 85.24 dev_rna_exp0016 H10 False 1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_QJL A23T55JLT4 243708764 478513910.0 0.007316 236609189.0 0.505533 0.936288 0.048916 0.97557 330.538124 151.0 0.723054 0.575788 0.0 108.2 102.0 0.05 1.21 0.31 0.0 0.48 0.0 No 0.0 9999000000.0 282429261.0 105 144.110302 0.509259 0.0 97.3304 84.35171141571968 94.27 23.5369 0.97435 50393816437.0 478513910.0 0.557744 98.17330779290317 83.46142693497883 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_QJL altera_exact 1173 clinical patient prostate Prostate 82 unknown False 1173_QJL_T1_RNA_SLD_01 tRNA altera_inhouse ssf 37.50 38.00 58.23 AIH_Ext13_RNA E01 False dev_rna_exp0016_lib_s21 200.00 83.07 dev_rna_exp0016 E03 False 1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_QJL A23T55JLT4 157409511 309884076.0 0.006443 174638594.0 0.436439 0.941721 0.046845 0.974723 238.597933 102.0 0.681832 0.504631 0.0 104.4 98.0 0.08 1.3 0.31 0.0 0.47 0.0 No 0.0 9999000000.0 273760601.0 100 131.666627 0.439269 9.999999999999999e-05 97.4239 85.05960204256074 94.65 18.377299999999998 0.97372 31492866530.0 309884076.0 0.546293 98.43244986638705 86.21684365692491 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RDM altera_exact 1173 clinical patient pancreatic Pancreatic 69 unknown False 1173_RDM_T1_RNA_SLD_01 tRNA altera_inhouse ssf 31.00 35.00 26.51 AIH_Ext12_RNA E02 False dev_rna_exp0016_lib_s13 200.00 17.99 dev_rna_exp0016 E02 False 1173_RDM_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RDM A23T55JLT4 281663000 552270522.0 0.010619 117615979.0 0.787032 0.861587 0.088552 0.972523 136.815059 48.0 0.590774 0.340622 0.0 108.2 105.0 0.01 0.89 0.35 0.0 0.6 0.0 No 0.0 9999000000.0 97887647.0 108 130.880126 0.795479 0.0 96.6707 82.3360599385074 93.36 43.2599 0.970831 58435829953.0 552270522.0 0.595998 98.03746356461444 86.7426087203502 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RDM altera_exact 1173 clinical patient pancreatic Pancreatic 69 unknown False 1173_RDM_T1_RNA_SLD_01 tRNA altera_inhouse ssf 31.00 35.00 26.51 AIH_Ext12_RNA E02 False dev_rna_exp0016_lib_s72 100.00 17.94 dev_rna_exp0016 H09 False 1173_RDM_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RDM A23T55JLT4 140421959 274799746.0 0.011572 66574347.0 0.757735 0.86524 0.086993 0.973121 74.980732 25.0 0.467073 0.196346 0.0 102.4 99.0 0.01 0.87 0.35 0.0 0.6 0.0 No 0.0 9999000000.0 56065518.0 101 120.568211 0.766606 0.0 96.4902 80.7101289355267 92.86 39.650400000000005 0.971223 27679492275.0 274799746.0 0.598026 97.8478536964436 89.16367987716222 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RGW altera_exact 1173 clinical patient pancreatic Pancreatic 54 unknown False 1173_RGW_T1_RNA_SLD_01 tRNA altera_inhouse ssf 30.30 38.00 29.38 AIH_Ext13_RNA A04 False dev_rna_exp0016_lib_s41 200.00 6.98 dev_rna_exp0016 A06 False 1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RGW A23T55JLT4 110493294 215545380.0 0.015733 31903297.0 0.851988 0.760614 0.133087 0.970003 28.046604 4.0 0.191738 0.0587 0.0 94.2 92.0 0.0 0.37 0.24 0.0 0.51 0.0 No 0.0 9999000000.0 32719055.0 94 107.220758 0.865607 0.0 95.3061 67.1883617696278 88.47 38.5069 0.966569 20064683352.0 215545380.0 0.654654 97.53776550457442 92.89724225254793 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RPC altera_exact 1173 clinical patient sarcoma Sarcoma 62 unknown False 1173_RPC_T1_RNA_SLD_01 tRNA altera_inhouse ssf 71.30 35.00 54.89 AIH_Ext12_RNA B02 False dev_rna_exp0016_lib_s10 200.00 41.29 dev_rna_exp0016 B02 False 1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RPC A23T55JLT4 27864917 54903478.0 0.006517 39647624.0 0.277867 0.95064 0.040335 0.97494 51.495811 15.0 0.379842 0.138862 0.0 99.7 95.0 0.02 1.45 0.6 0.0 0.84 0.0 No 0.0 9999000000.0 104874615.0 95 123.243581 0.27969 9.999999999999999e-05 97.8168 86.77801288338443 95.17 11.6806 0.973991 5361892828.0 54903478.0 0.530127 98.51721072774055 90.43449510364592 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RPC altera_exact 1173 clinical patient sarcoma Sarcoma 62 unknown False 1173_RPC_T1_RNA_SLD_01 tRNA altera_inhouse ssf 71.30 35.00 54.89 AIH_Ext12_RNA B02 False dev_rna_exp0016_lib_s69 100.00 56.82 dev_rna_exp0016 E09 False 1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RPC A23T55JLT4 284668702 559664924.0 0.007063 206892507.0 0.630328 0.932359 0.048535 0.97521 268.780762 108.0 0.654241 0.512781 0.0 102.4 97.0 0.01 1.38 0.62 0.0 0.88 0.0 No 0.0 9999000000.0 183787634.0 99 130.948582 0.634812 0.0 97.8962 86.96070800563052 95.02 28.5385 0.974169 56211904345.0 559664924.0 0.536805 98.30109879799852 88.88322450706225 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RPX altera_exact 1173 clinical patient crc Colorectal 58 unknown False 1173_RPX_T1_RNA_SLD_01 tRNA altera_inhouse ssf 48.50 38.00 46.2 AIH_Ext13_RNA C05 False dev_rna_exp0016_lib_s51 200.00 58.76 dev_rna_exp0016 C07 False 1173_RPX_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RPX A23T55JLT4 359293847 589678722.0 0.00706 285996753.0 0.514996 0.941262 0.044181 0.973001 414.421193 177.0 0.712452 0.589223 0.0 111.2 106.0 0.02 1.13 0.5 0.0 0.77 0.0 No 0.0 9999000000.0 369972839.0 111 156.362806 0.518657 0.0 97.5704 84.98349922589537 94.35 25.6756 0.971856 63788408549.0 589678722.0 0.554347 98.279787 82.59509266666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RQT altera_exact 1173 clinical patient sarcoma Sarcoma 84 unknown False 1173_RQT_T1_RNA_SLD_01 tRNA altera_inhouse ssf 47.20 35.00 22.07 AIH_Ext12_RNA G02 False dev_rna_exp0016_lib_s15 200.00 28.48 dev_rna_exp0016 G02 False 1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RQT A23T55JLT4 274602657 535352092.0 0.008481 147337300.0 0.724784 0.894218 0.074965 0.973189 173.598498 65.0 0.616299 0.414431 0.0 101.5 97.0 0.01 0.94 0.56 0.0 0.88 0.0 No 0.0 9999000000.0 129033287.0 102 136.090386 0.730984 0.0 96.68369999999999 83.44362604641486 94.01 34.1105 0.971776 53711852394.0 535352092.0 0.58522 97.47758777148321 88.27125897037479 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_RQT altera_exact 1173 clinical patient sarcoma Sarcoma 84 unknown False 1173_RQT_T1_RNA_SLD_01 tRNA altera_inhouse ssf 47.20 35.00 22.07 AIH_Ext12_RNA G02 False dev_rna_exp0016_lib_s74 100.00 20.18 dev_rna_exp0016 B10 False 1173_RQT_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_RQT A23T55JLT4 194994800 381193030.0 0.008763 88468794.0 0.767916 0.882602 0.079639 0.971577 106.406468 37.0 0.539895 0.288097 0.0 106.0 101.0 0.01 0.87 0.54 0.0 0.86 0.0 No 0.0 9999000000.0 77981001.0 108 147.488993 0.774705 0.0 96.6899 83.66424795448577 94.09 40.1216 0.970117 39658577874.0 381193030.0 0.583598 97.74440908167807 86.30830129829104 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_S9Q altera_exact 1173 clinical patient esophageal Esophageal 79 unknown False 1173_S9Q_T1_RNA_SLD_01 tRNA altera_inhouse ssf 33.30 38.00 33.44 AIH_Ext13_RNA E05 False dev_rna_exp0016_lib_s53 200.00 46.89 dev_rna_exp0016 E07 False 1173_S9Q_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_S9Q A23T55JLT4 303932819 589432784.0 0.008542 246915028.0 0.581097 0.930267 0.049342 0.972709 354.682977 156.0 0.734807 0.583144 0.0 114.1 109.0 0.01 0.68 0.38 0.0 0.6 0.0 No 0.0 9999000000.0 238579475.0 114 153.663498 0.586104 0.0 97.24159999999999 84.43327047294588 94.14 35.3908 0.971405 64797224108.0 589432784.0 0.578284 98.23879733333334 81.08410216666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_SDP altera_exact 1173 clinical patient pancreatic Pancreatic 70 unknown False 1173_SDP_T1_RNA_SLD_01 tRNA altera_inhouse ssf 26.40 38.00 38.1 AIH_Ext13_RNA G03 False dev_rna_exp0016_lib_s39 200.00 41.02 dev_rna_exp0016 G05 False 1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_SDP A23T55JLT4 363150906 591418434.0 0.006906 183749541.0 0.689307 0.921201 0.05657 0.97351 225.686877 95.0 0.679312 0.491492 0.0 98.8 95.0 0.01 0.63 0.38 0.0 0.61 0.0 No 0.0 9999000000.0 149938835.0 99 129.246376 0.694101 0.0 97.7097 86.83781196372365 95.23 30.359199999999998 0.972536 58221649658.0 591418434.0 0.564885 98.569739 90.99672266666666 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_SFA altera_exact 1173 clinical patient lung Lung 76 unknown False 1173_SFA_T1_RNA_SLD_01 tRNA altera_inhouse ssf 261.00 38.00 40.94 AIH_Ext13_RNA C04 False dev_rna_exp0016_lib_s43 200.00 3.30 dev_rna_exp0016 C06 False 1173_SFA_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_SFA A23T55JLT4 35664157 69311912.0 0.008631 8171081.0 0.882111 0.792726 0.134058 0.971259 10.27571 3.0 0.079694 0.009836 0.0 131.7 121.0 0.01 0.66 0.24 0.0 0.48 0.0 No 0.0 9999000000.0 9380287.0 127 180.13828 0.889791 0.0 96.7985 78.28857997046273 92.11 60.7131 0.969695 8164549669.0 69311912.0 0.58578 97.17306930877407 68.34838126133192 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_SK8 altera_exact 1173 clinical patient lung Lung 62 unknown False 1173_SK8_T1_RNA_SLD_01 tRNA altera_inhouse ssf 36.30 38.00 49.8 AIH_Ext13_RNA H01 False dev_rna_exp0016_lib_s24 200.00 78.96 dev_rna_exp0016 H03 False 1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_SK8 A23T55JLT4 372836202 590162368.0 0.00776 310153306.0 0.474461 0.939488 0.045747 0.97267 467.344594 239.0 0.776244 0.652264 0.0 113.5 106.0 0.03 1.11 0.42 0.0 0.64 0.0 No 0.0 9999000000.0 492615446.0 110 163.717895 0.478171 9.999999999999999e-05 97.2946 83.73576307763827 94.32 22.633 0.971565 63874099942.0 590162368.0 0.545211 98.36039466666666 78.81002216666667 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_SK8 altera_exact 1173 clinical patient lung Lung 62 unknown False 1173_SK8_T1_RNA_SLD_01 tRNA altera_inhouse ssf 36.30 38.00 49.8 AIH_Ext13_RNA H01 False dev_rna_exp0016_lib_s83 100.00 94.92 dev_rna_exp0016 C11 False 1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_SK8 A23T55JLT4 208199372 408413764.0 0.008451 241890484.0 0.407732 0.944177 0.041554 0.973441 390.565057 198.0 0.760043 0.625115 0.0 123.5 116.0 0.01 1.02 0.41 0.0 0.62 0.0 No 0.0 9999000000.0 410428532.0 125 203.813231 0.411207 0.0 97.3464 86.09967567211048 94.46 22.6579 0.972183 47239473922.0 408413764.0 0.551439 98.08237173741331 72.30255502403725 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_T46 altera_exact 1173 clinical patient sarcoma Sarcoma 60 unknown False 1173_T46_T1_RNA_SLD_01 tRNA altera_inhouse ssf 17.80 38.00 42.75 AIH_Ext13_RNA E03 False dev_rna_exp0016_lib_s37 200.00 21.36 dev_rna_exp0016 E05 False 1173_T46_T1_RNA_SLD_01_A23T55JLT4_1 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_T46 A23T55JLT4 314730154 590624724.0 0.007689 139728825.0 0.763422 0.899974 0.067525 0.970654 176.14429 53.0 0.591346 0.379272 0.0 108.6 104.0 0.0 0.98 0.29 0.0 0.48 0.0 No 0.0 9999000000.0 141616493.0 109 153.85876 0.769337 0.0 97.41300000000001 82.70431208366016 94.15 39.1673 0.969341 62566346574.0 590624724.0 0.560216 98.437454 84.08637983333334 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
dev_rna_exp0016 1173_T46 altera_exact 1173 clinical patient sarcoma Sarcoma 60 unknown False 1173_T46_T1_RNA_SLD_01 tRNA altera_inhouse ssf 17.80 38.00 42.75 AIH_Ext13_RNA E03 False dev_rna_exp0016_lib_s96 100.00 24.59 dev_rna_exp0016 H12 False 1173_T46_T1_RNA_SLD_01_A23T55JLT4_2 dev_rna_exp0016 1,2,3,4,5,6,7,8 1.00 False 1173_T46 A23T55JLT4 278186770 544744504.0 0.00803 118341229.0 0.782758 0.898965 0.064069 0.973957 148.845732 46.0 0.573001 0.345819 0.0 106.8 101.0 0.0 0.93 0.29 0.0 0.49 0.0 No 0.0 9999000000.0 96735325.0 108 155.982572 0.789095 0.0 97.4893 84.4962910569478 94.32 48.1955 0.972496 57140025495.0 544744504.0 0.563416 97.90985099686804 84.89440978807151 dev_rna_exp0016 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_bdp altera_exact 1023 clinical patient Esophageal Esophageal 71 unknown False 659_bdp_T1_TRNA_1 tRNA altera_exact ssf 168.00 83.46 False cgp_rna_exp0034_lib_s05 200.00 79.83 cgp_rna_exp0034 E01 False 659_bdp_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_bdp B2372Y3LT4 169301685 335568900.0 0.006861 187119236.0 0.442382 0.923627 0.064069 0.96818 391.606192 172.0 0.714069 0.590416 0.0 175.2 168.0 0.03 0.97 0.42 0.0 0.67 0.0 No 0.0 9999000000.0 238383033.0 245 629.071644 0.445438 0.0 96.46289999999999 89.75365845549662 95.59 31.5454 0.967121 46101324488.0 335568900.0 0.55159 99.10382758446852 30.699890553363364 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_beZ altera_exact 1023 clinical patient Colorectal Colorectal 57 unknown False 659_beZ_T1_TRNA_2 tRNA altera_exact ssf 5.1 55.05 False cgp_rna_exp0034_lib_s14 200.00 6.92 cgp_rna_exp0034 F02 False 659_beZ_T1_TRNA_2_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_beZ B2372Y3LT4 20805724 41036988.0 0.008659 23191832.0 0.434855 0.923822 0.060857 0.966823 41.209482 15.0 0.353105 0.096719 0.0 146.5 140.0 0.08 1.0 0.58 0.0 0.84 0.0 No 0.0 9999000000.0 27408720.0 174 390.572593 0.438654 0.0009 97.294 83.2950556990605 94.23 28.3176 0.965053 5252436643.0 41036988.0 0.575617 98.61946645067482 54.83056970283755 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_bld altera_exact 1023 clinical patient Sarcoma Sarcoma 62 unknown False 659_bld_T1_TRNA_1 tRNA altera_exact ssf 412.00 84.76 False cgp_rna_exp0034_lib_s08 200.00 128.09 cgp_rna_exp0034 H01 False 659_bld_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_bld B2372Y3LT4 144136703 285664122.0 0.004856 175200042.0 0.386692 0.923056 0.069026 0.968467 358.14984 152.0 0.702157 0.571574 0.0 171.0 162.0 0.02 1.48 0.52 0.0 0.78 0.0 No 0.0 9999000000.0 294611046.0 244 591.601628 0.388579 0.0 95.75829999999999 91.45788976549007 96.33 25.7758 0.967486 38751033675.0 285664122.0 0.556189 99.09485788640524 35.7146066397814 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_bqK altera_exact 1023 clinical patient Bladder Bladder 71 unknown False 659_bqK_T1_TRNA_1 tRNA altera_exact ssf 287.00 71.47 RNAfusions False cgp_rna_exp0034_lib_s15 200.00 22.09 cgp_rna_exp0034 G02 False 659_bqK_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_bqK B2372Y3LT4 131917517 261076882.0 0.007079 92697537.0 0.644942 0.870277 0.109784 0.96813 138.118277 59.0 0.609631 0.380725 0.0 131.0 128.0 0.04 0.64 0.62 0.0 0.94 0.0 No 0.0 9999000000.0 126721284.0 151 304.223071 0.64954 0.0 96.1601 90.22693434184428 95.94 39.0128 0.966829 31777981346.0 261076882.0 0.540301 98.95459220931212 67.88284492953275 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_bW9 altera_exact 1023 clinical patient Endometrial Endometrial 54 unknown False 659_bW9_T1_TRNA_1 tRNA altera_exact ssf 125.00 93.79 False cgp_rna_exp0034_lib_s17 200.00 128.49 cgp_rna_exp0034 A03 False 659_bW9_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_bW9 B2372Y3LT4 200217332 396918378.0 0.005224 254182673.0 0.35961 0.92965 0.062192 0.968113 552.969852 306.0 0.777943 0.677053 0.0 185.0 171.0 0.03 0.73 0.27 0.0 0.45 0.0 No 0.0 9999000000.0 443269433.0 273 759.584367 0.361498 0.0 96.3344 89.6042796904253 95.59 25.6126 0.967151 54579269687.0 396918378.0 0.541383 99.121882714929 30.337640799249087 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_cX2 altera_exact 1023 clinical patient Sarcoma Sarcoma 62 unknown False 659_cX2_T1_TRNA_1 tRNA altera_exact ssf 356.00 89.69 False cgp_rna_exp0034_lib_s01 200.00 117.97 cgp_rna_exp0034 A01 False 659_cX2_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_cX2 B2372Y3LT4 78630038 155908684.0 0.004901 100330321.0 0.35648 0.932576 0.059807 0.967782 217.901054 72.0 0.611857 0.440424 0.0 183.2 174.0 0.02 0.65 0.27 0.0 0.47 0.0 No 0.0 9999000000.0 209951088.0 358 946.04279 0.358236 0.0 96.7559 92.7923268653361 96.62 24.0282 0.966816 21602815920.0 155908684.0 0.546163 99.1406642840488 27.40666804713995 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_db9 altera_exact 1023 clinical patient Ovarian Ovarian 67 unknown False 659_db9_T1_TRNA_1 tRNA altera_exact ssf 16.5 79.94 False cgp_rna_exp0034_lib_s07 200.00 127.5 cgp_rna_exp0034 G01 False 659_db9_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_db9 B2372Y3LT4 220047060 436211514.0 0.005151 257382502.0 0.409959 0.931628 0.059643 0.968567 573.193196 255.0 0.759574 0.648808 0.0 192.3 180.0 0.04 0.78 0.29 0.0 0.49 0.0 No 0.0 9999000000.0 394043534.0 318 843.021558 0.412082 0.0 96.9949 92.23648080103084 96.73 30.135800000000003 0.967668 60812758683.0 436211514.0 0.54183 99.11777826070478 25.20730133817739 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_dDe altera_exact 1023 clinical patient Lung Lung 82 unknown False 659_dDe_T1_TRNA_1 tRNA altera_exact ssf 7.00 77.37 False cgp_rna_exp0034_lib_s16 200.00 46.69 cgp_rna_exp0034 H02 False 659_dDe_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_dDe B2372Y3LT4 147838523 292564906.0 0.006265 141299175.0 0.517033 0.904163 0.082866 0.967954 268.124147 111.0 0.667566 0.518453 0.0 162.3 151.0 0.02 1.1 0.31 0.0 0.55 0.0 No 0.0 9999000000.0 143131933.0 191 423.177977 0.520293 0.0 96.355 88.43225619106147 95.59 36.336400000000005 0.96687 38809538331.0 292564906.0 0.546396 98.94745295852286 44.43323747221149 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_e1p altera_exact 1023 clinical patient Melanoma: Uveal Melanoma 67 unknown False 659_e1p_T1_TRNA_1 tRNA altera_exact ssf 107.00 91.95 False cgp_rna_exp0034_lib_s18 200.00 108.56 cgp_rna_exp0034 B03 False 659_e1p_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_e1p B2372Y3LT4 203515105 403110406.0 0.004659 240191520.0 0.404155 0.936205 0.055976 0.968158 493.611685 173.0 0.694147 0.572893 0.0 170.1 158.0 0.03 1.62 0.38 0.0 0.6 0.0 No 0.0 9999000000.0 353442381.0 284 871.5570379999999 0.406046 0.0 97.5436 92.15928413764728 96.68 27.6856 0.967142 54016966604.0 403110406.0 0.540652 99.03697467566352 40.26696323105845 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_epJ altera_exact 1023 clinical patient Melanoma Melanoma 79 unknown False 659_epJ_T1_TRNA_1 tRNA altera_exact ssf 20.2 84.19 False cgp_rna_exp0034_lib_s11 200.00 71.00 cgp_rna_exp0034 C02 False 659_epJ_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_epJ B2372Y3LT4 156493084 309906658.0 0.006538 166470221.0 0.462838 0.918665 0.069163 0.968487 324.146242 137.0 0.68774 0.550496 0.0 160.8 152.0 0.03 1.15 0.47 0.0 0.71 0.0 No 0.0 9999000000.0 201925422.0 196 452.23567800000006 0.465884 0.0 96.881 88.23726470434269 95.26 31.8756 0.967359 41353454697.0 309906658.0 0.547993 99.01608750965633 42.72283336176058 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_exc altera_exact 1023 clinical patient Kidney Renal 76 unknown False 659_exc_T1_TRNA_1 tRNA altera_exact ssf 115.00 94.61 False cgp_rna_exp0034_lib_s19 200.00 102.24 cgp_rna_exp0034 C03 False 659_exc_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_exc B2372Y3LT4 152879574 302807438.0 0.006179 186031457.0 0.385644 0.927358 0.062583 0.969021 343.900319 162.0 0.705776 0.579905 0.0 151.2 143.0 0.04 0.77 0.49 0.0 0.71 0.0 No 0.0 9999000000.0 285721768.0 184 493.33329799999996 0.388042 0.0 96.8118 91.26458556086573 96.17 23.8934 0.967884 39066084391.0 302807438.0 0.532335 99.03462904730492 52.83891162595731 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_v2 altera_exact 1023 clinical patient Thyroid Thyroid 62 unknown False 659_v2_T1_TRNA_1 tRNA altera_exact ssf 93.41 False cgp_rna_exp0034_lib_s02 200.00 33.15 cgp_rna_exp0034 B01 False 659_v2_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_v2 B2372Y3LT4 172103977 340840536.0 0.006674 138644397.0 0.593228 0.912068 0.071525 0.968658 267.402416 121.0 0.684432 0.535128 0.0 163.7 157.0 0.09 2.11 0.56 0.0 0.85 0.0 No 0.0 9999000000.0 134937807.0 253 803.973636 0.597214 9.999999999999999e-05 97.6554 90.34129628860286 95.8 42.7332 0.967503 45719811804.0 340840536.0 0.532452 99.02169082356534 39.63700036984038 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_w altera_exact 1023 clinical patient Breast Breast 72 unknown False 659_w_T1_TRNA_1 tRNA altera_exact ssf 355.00 49.81 False cgp_rna_exp0034_lib_s13 200.00 20.33 cgp_rna_exp0034 E02 False 659_w_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_w B2372Y3LT4 102677201 202092808.0 0.013118 67304089.0 0.666964 0.821897 0.138714 0.964026 113.017555 17.0 0.418902 0.239772 0.0 162.9 155.0 0.0 0.99 0.34 0.0 0.54 0.0 No 0.0 9999000000.0 73860705.0 178 279.857889 0.67583 9.999999999999999e-05 93.9291 84.55300591649777 93.95 47.2236 0.961011 26926011063.0 202092808.0 0.636279 98.41172433206472 41.36098041862283 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_w0 altera_exact 1023 clinical patient Colorectal Colorectal 83 unknown False 659_w0_T1_TRNA_1 tRNA altera_exact ssf 133.00 94.33 False cgp_rna_exp0034_lib_s04 200.00 11.33 cgp_rna_exp0034 D01 False 659_w0_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_w0 B2372Y3LT4 130419316 258106252.0 0.007106 68488488.0 0.73465 0.855327 0.117892 0.968008 103.230861 38.0 0.545022 0.288563 0.0 140.6 138.0 0.12 1.99 0.66 0.0 0.89 0.0 No 0.0 9999000000.0 70196203.0 166 421.963778 0.739908 9.999999999999999e-05 97.3986 88.48048486689393 95.34 48.683 0.966663 32467639503.0 258106252.0 0.532299 98.9524634525763 57.99295558335853 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_w9 altera_exact 1023 clinical patient Cutaneous Squamous Cell Carcinoma Cutaneous Squamous Cell Carcinoma 70 unknown False 659_w9_T1_TRNA_1 tRNA altera_exact ssf 270.00 68.89 False cgp_rna_exp0034_lib_s03 200.00 50.48 cgp_rna_exp0034 C01 False 659_w9_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_w9 B2372Y3LT4 171110604 338985568.0 0.008249 159224798.0 0.53029 0.904301 0.078138 0.968478 299.555099 132.0 0.687886 0.548003 0.0 160.5 155.0 0.01 0.48 0.45 0.0 0.72 0.0 No 0.0 9999000000.0 160374181.0 189 389.278086 0.534701 0.0 96.1352 88.63057721220635 95.4 36.762499999999996 0.967308 45208889301.0 338985568.0 0.548577 99.05451797715588 41.57002595818083 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_x2 altera_exact 1023 clinical patient Bladder Bladder 76 unknown False 659_x2_T1_TRNA_1 tRNA altera_exact ssf 148.00 74.04 False cgp_rna_exp0034_lib_s12 200.00 93.39 cgp_rna_exp0034 D02 False 659_x2_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_x2 B2372Y3LT4 148655917 294302488.0 0.005564 175008774.0 0.405344 0.918365 0.072277 0.967287 342.684671 162.0 0.717591 0.581733 0.0 164.2 155.0 0.06 1.36 0.37 0.0 0.59 0.0 No 0.0 9999000000.0 247443726.0 204 473.053883 0.407612 0.0 95.7334 90.24272924875629 96.17 27.1451 0.966079 39442702739.0 294302488.0 0.542288 98.98781492834894 40.803456884935166 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_yF altera_exact 1023 clinical patient Breast Breast 53 unknown False 659_yF_T1_TRNA_1 tRNA altera_exact ssf 355.00 80.8 False cgp_rna_exp0034_lib_s06 200.00 99.54 cgp_rna_exp0034 F01 False 659_yF_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_yF B2372Y3LT4 185107447 366844434.0 0.005004 209815408.0 0.428053 0.928535 0.062716 0.966632 429.528748 169.0 0.691206 0.57656 0.0 170.1 162.0 0.03 1.01 0.46 0.0 0.72 0.0 No 0.0 9999000000.0 301834759.0 247 650.368597 0.430206 0.0 96.4689 90.45073414764587 96.01 28.9281 0.9656 49751492407.0 366844434.0 0.552733 99.08959362396695 34.996007480995615 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_yV altera_exact 1023 clinical patient Breast Breast 64 unknown False 659_yV_T1_TRNA_1 tRNA altera_exact ssf 401.00 76.44 False cgp_rna_exp0034_lib_s20 200.00 46.17 cgp_rna_exp0034 D03 False 659_yV_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_yV B2372Y3LT4 124951656 247252462.0 0.007371 123423301.0 0.500821 0.8943 0.090934 0.968172 194.626443 86.0 0.656419 0.469397 0.0 134.9 129.0 0.04 0.72 0.46 0.0 0.74 0.0 No 0.0 9999000000.0 134701115.0 143 236.906482 0.50454 0.0 95.4415 87.8427078430352 95.31 29.401699999999998 0.966797 30321893753.0 247252462.0 0.548339 98.93924975272036 65.68325513028816 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_z2 altera_exact 1023 clinical patient Lung Lung 57 unknown False 659_z2_T1_TRNA_1 tRNA altera_exact ssf 57.2 69.49 False cgp_rna_exp0034_lib_s09 200.00 127.28 cgp_rna_exp0034 A02 False 659_z2_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_z2 B2372Y3LT4 155595624 308445500.0 0.005873 214515063.0 0.304528 0.920055 0.0715 0.96967 451.759217 263.0 0.763521 0.659495 0.0 181.7 170.0 0.02 0.5 0.37 0.0 0.53 0.0 No 0.0 9999000000.0 417208461.0 246 685.733825 0.306328 0.0 95.0351 90.70934022009308 95.97 22.38 0.968707 42517112244.0 308445500.0 0.522278 99.11766541711997 29.92881695696018 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
cgp_rna_exp0034 659_zC altera_exact 1023 clinical patient Endometrial Endometrial 75 unknown False 659_zC_T1_TRNA_1 tRNA altera_exact ssf 970.00 75.56 False cgp_rna_exp0034_lib_s10 200.00 29.32 cgp_rna_exp0034 B02 False 659_zC_T1_TRNA_1_B2372Y3LT4_1 cgp_rna_exp0034 8 1.00 False 659_zC B2372Y3LT4 136877361 270713034.0 0.00635 114318213.0 0.577714 0.891793 0.09317 0.967491 188.709195 82.0 0.658812 0.459723 0.0 143.2 138.0 0.05 0.95 0.42 0.0 0.63 0.0 No 0.0 9999000000.0 113290892.0 158 297.47332 0.581406 0.0 95.8984 89.33520536701592 95.69 38.2851 0.966176 34496435781.0 270713034.0 0.557225 98.88890026159987 57.202094216296295 cgp_rna_exp0034 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/cgp_rna_exp0034/B2372Y3LT4/hmnz_cgp_rna_exp0034__2fc4034--20260521-224854/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204 PASS
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