record_type	patient_id	variant_type	event_id	FUSION_ID	FUSION_ID_norm	original_status	adjudicated_status	fn_note	test_tools	meta_patient_id	meta_experiment	meta_specimen_id	meta_specimen_source	meta_dspe_ticket	meta_specimen_type	meta_form_factor	meta_raw_cancer_type	meta_normalized_cancer_type	meta_raw_cancer_subtype	meta_raw_cancer_stage	meta_sex	meta_age	meta_specimen_location	meta_source_id	meta_lot	meta_specimen_failed	meta_sample_id	meta_sample_type	meta_extraction_method	meta_sample_location	meta_sample_barcode	meta_extraction_conc	meta_sample_volume_remaining	meta_dv200	meta_din	meta_rin	meta_extraction_plate	meta_extraction_well	meta_sample_reserved	meta_sample_failed	meta_sample_failure_notes	meta_library_id	meta_library_input_mass	meta_library_volume	meta_library_conc	meta_library_plate	meta_library_well	meta_ratio_sample_secondary_sample	meta_library_failed	meta_library_failure_notes	meta_sequencing_library_id	meta_run_name	meta_lane	meta_loading_ratio	meta_seq_library_failed	meta_seq_library_failure_notes	test_DATA_SOURCE	test_SAMPLE_ID	test_SVTYPE	test_CHRA	test_CHRB	test_GENEA	test_GENEB	test_POSA	test_POSB	test_BREAKPOINT_ID	test_ORIENTATION	test_FOUND_IN	test_TOOL_HITS	test_PR	test_SR	test_FFPM	test_FUSION_READS	test_FILTER	test_FRAME_STATUS	test_FUSION_ID	test_FUSION_ID_norm	test_ANNOTATIONS	test_AR_CONFIDENCE	test_AR_TYPE	test_AR_SITE_A	test_AR_SITE_B	test_AR_COVERAGE_A	test_AR_COVERAGE_B	test_AR_FILTER_DUPLICATES	test_AR_FILTER_MISMATCHES	test_AR_FILTER_MISMAPPERS	test_AR_FILTER_MULTIMAPPERS	test_SF_SPLICE_TYPE	test_SF_LARGE_ANCHOR	test_SF_BREAK_ENTROPY_MIN	test_SF_IS_BLACKLISTED	test_SF_IS_NEIGHBORS	test_SF_IS_NEIGHBORS_OVERLAP	test_SF_BREAK_DINUC_LEFT	test_SF_BREAK_DINUC_RIGHT	test_SPLIT_READS1	test_SPLIT_READS2	test_IS_INFRAME	test_FILTER_REASON	test_ANNOT_DB_HITS	test_AR_FILTER	test_AR_aih_curated_reason	test_AR_blacklisted	test_AR_breakpoint1	test_AR_breakpoint2	test_AR_breakpoint_ID	test_AR_closest_genomic_breakpoint1	test_AR_closest_genomic_breakpoint2	test_AR_confidence	test_AR_coverage1	test_AR_coverage2	test_AR_direction1	test_AR_direction2	test_AR_discordant_mates	test_AR_filter_reason	test_AR_filters	test_AR_fusion_transcript	test_AR_gene1	test_AR_gene2	test_AR_gene_id1	test_AR_gene_id2	test_AR_peptide_sequence	test_AR_read_identifiers	test_AR_reading_frame	test_AR_retained_protein_domains	test_AR_site1	test_AR_site2	test_AR_split_reads1	test_AR_split_reads2	test_AR_strand1(gene/fusion)	test_AR_strand2(gene/fusion)	test_AR_tags	test_AR_total_reads	test_AR_transcript_id1	test_AR_transcript_id2	test_AR_type	test_AR_vaf1	test_AR_vaf2	test_AR_vaf_avg	test_SF_CALL	test_SF_CDS_LEFT_ID	test_SF_CDS_LEFT_RANGE	test_SF_CDS_RIGHT_ID	test_SF_CDS_RIGHT_RANGE	test_SF_FFPM	test_SF_FILTER	test_SF_FUSION_CDS	test_SF_FUSION_MODEL	test_SF_FUSION_TRANSL	test_SF_FusionName	test_SF_JunctionReadCount	test_SF_JunctionReads	test_SF_LargeAnchorSupport	test_SF_LeftBreakDinuc	test_SF_LeftBreakEntropy	test_SF_LeftBreakpoint	test_SF_LeftGene	test_SF_PFAM_LEFT	test_SF_PFAM_RIGHT	test_SF_PROT_FUSION_TYPE	test_SF_RightBreakDinuc	test_SF_RightBreakEntropy	test_SF_RightBreakpoint	test_SF_RightGene	test_SF_SpanningFragCount	test_SF_SpanningFrags	test_SF_SpliceType	test_SF_aih_curated_reason	test_SF_annots	test_SF_blacklist_reasons	test_SF_blacklisted	test_SF_breakpoint_ID	test_SF_est_J	test_SF_est_S	test_SF_filter_reason	test_SF_total_reads	test_patient_id	caller
fp_audit	1173_9C	fusion	AC003070--ERBB2	ERBB2--AC003070	AC003070--ERBB2	FP	FP		Arriba		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	AC003070	39724986	45382133	chr17:39724986-chr17:45382133	+,-	Arriba	1	1	81		82	PASS	out-of-frame	ERBB2--AC003070	AC003070--ERBB2	confidence:medium;duplicates(97),mismatches(27)	medium	inversion	intron	intergenic	1853	7	97.0	27.0	0.0	0.0									78	3	False	duplicates(97),mismatches(27)		FAIL		False	chr17:39724986	chr17:45382133	chr17:39724986-chr17:45382133	.	.	medium	1853	7	downstream	downstream	1	confidence_below_min(medium<high)	duplicates(97),mismatches(27)	ACACAGCTTATGCCCTATGGCTGCCTCTTAGACCATGTCCGGGAAAACCGCGGACGCCTGGGCTCCCAGGACCTGCTGAACTGGTGTATGCAGATTGCCAAGGTATGCACCTGGGCTCTTTGCAGGTCTCTCCGGAGCAAACCCCTATGTCCACAAGGGGCTAGGATGGGGACTCTT|AAGCCAGGCACAAAAAAGAGCAGTTGTTATGGTTCCATTTATATAAAACTCAAAAGCAGGCA	ERBB2	AC003070.2(10076),ARHGAP27(11769)	ENSG00000141736	.	TQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKvctwalcrslrskplcpqgarmgtl|kpgtkksscygsiyiklksr	LH00995:25:23T55JLT4:1:1101:2578:21108,LH00995:25:23T55JLT4:1:1111:24874:19342,LH00995:25:23T55JLT4:1:1113:35949:24064,LH00995:25:23T55JLT4:1:1113:35957:24050,LH00995:25:23T55JLT4:1:1118:21710:12378,LH00995:25:23T55JLT4:1:1118:21718:12364,LH00995:25:23T55JLT4:1:1118:21727:12378,LH00995:25:23T55JLT4:1:1129:14543:1560,LH00995:25:23T55JLT4:1:1175:30205:12350,LH00995:25:23T55JLT4:1:1176:39921:11747,LH00995:25:23T55JLT4:1:1184:43901:11803,LH00995:25:23T55JLT4:1:1216:40495:12742,LH00995:25:23T55JLT4:1:1243:38335:7039,LH00995:25:23T55JLT4:1:1255:47348:6927,LH00995:25:23T55JLT4:1:1255:47364:6927,LH00995:25:23T55JLT4:1:1285:8095:13345,LH00995:25:23T55JLT4:1:1318:17552:8230,LH00995:25:23T55JLT4:1:1328:41418:3438,LH00995:25:23T55JLT4:1:1452:45163:1238,LH00995:25:23T55JLT4:1:1463:21840:25914,LH00995:25:23T55JLT4:1:1473:2440:19384,LH00995:25:23T55JLT4:1:2124:2658:18866,LH00995:25:23T55JLT4:1:2146:49775:24835,LH00995:25:23T55JLT4:1:2174:30399:12910,LH00995:25:23T55JLT4:1:2181:30585:9365,LH00995:25:23T55JLT4:1:2193:32058:5918,LH00995:25:23T55JLT4:1:2230:28781:29641,LH00995:25:23T55JLT4:1:2291:13887:4713,LH00995:25:23T55JLT4:1:2340:21160:21906,LH00995:25:23T55JLT4:1:2375:50915:11705,LH00995:25:23T55JLT4:1:2376:17431:1967,LH00995:25:23T55JLT4:2:1116:17585:13667,LH00995:25:23T55JLT4:2:1127:35949:13807,LH00995:25:23T55JLT4:2:1181:27616:21626,LH00995:25:23T55JLT4:2:1186:50122:1448,LH00995:25:23T55JLT4:2:1231:30666:19987,LH00995:25:23T55JLT4:2:1267:3492:24176,LH00995:25:23T55JLT4:2:1275:19510:17619,LH00995:25:23T55JLT4:2:1290:29728:24302,LH00995:25:23T55JLT4:2:1422:35326:8413,LH00995:25:23T55JLT4:2:1432:29986:1126,LH00995:25:23T55JLT4:2:1492:28190:28534,LH00995:25:23T55JLT4:2:2107:29137:17731,LH00995:25:23T55JLT4:2:2111:33222:28983,LH00995:25:23T55JLT4:2:2129:2828:18684,LH00995:25:23T55JLT4:2:2131:22657:18053,LH00995:25:23T55JLT4:2:2155:5757:28016,LH00995:25:23T55JLT4:2:2161:17706:15839,LH00995:25:23T55JLT4:2:2164:20287:19524,LH00995:25:23T55JLT4:2:2188:28538:18319,LH00995:25:23T55JLT4:2:2195:15222:21598,LH00995:25:23T55JLT4:2:2205:18353:6451,LH00995:25:23T55JLT4:2:2232:14219:28941,LH00995:25:23T55JLT4:2:2259:12682:12798,LH00995:25:23T55JLT4:2:2277:5150:9618,LH00995:25:23T55JLT4:2:2292:8823:5778,LH00995:25:23T55JLT4:2:2314:46555:7908,LH00995:25:23T55JLT4:2:2325:29032:10682,LH00995:25:23T55JLT4:2:2359:36936:8427,LH00995:25:23T55JLT4:2:2396:52194:18375,LH00995:25:23T55JLT4:2:2421:20481:2738,LH00995:25:23T55JLT4:2:2464:15505:24891,LH00995:25:23T55JLT4:2:2464:46442:25031,LH00995:25:23T55JLT4:3:1114:36151:10626,LH00995:25:23T55JLT4:3:1150:21621:4629,LH00995:25:23T55JLT4:3:1156:8467:22145,LH00995:25:23T55JLT4:3:1271:12229:21122,LH00995:25:23T55JLT4:3:1275:45519:12840,LH00995:25:23T55JLT4:3:1334:45042:27735,LH00995:25:23T55JLT4:3:1467:42720:29347,LH00995:25:23T55JLT4:3:1485:34096:27749,LH00995:25:23T55JLT4:3:1486:42405:4923,LH00995:25:23T55JLT4:3:2242:48262:25129,LH00995:25:23T55JLT4:3:2252:22309:26923,LH00995:25:23T55JLT4:3:2265:2675:16792,LH00995:25:23T55JLT4:3:2265:9050:16540,LH00995:25:23T55JLT4:3:2290:44589:2093,LH00995:25:23T55JLT4:3:2336:11517:18936,LH00995:25:23T55JLT4:3:2359:48901:19258,LH00995:25:23T55JLT4:3:2376:40512:10276,LH00995:25:23T55JLT4:3:2417:27729:13275,LH00995:25:23T55JLT4:3:2459:40366:22159,LH00995:25:23T55JLT4:3:2483:9122:10556,LH00995:25:23T55JLT4:4:1165:24663:6983,LH00995:25:23T55JLT4:4:1174:41353:11649,LH00995:25:23T55JLT4:4:1202:23272:14942,LH00995:25:23T55JLT4:4:1247:51708:1953,LH00995:25:23T55JLT4:4:1341:19300:16918,LH00995:25:23T55JLT4:4:1345:23822:15222,LH00995:25:23T55JLT4:4:1350:35172:16414,LH00995:25:23T55JLT4:4:1397:41191:21598,LH00995:25:23T55JLT4:4:1433:18224:8384,LH00995:25:23T55JLT4:4:1477:9462:23728,LH00995:25:23T55JLT4:4:2153:36790:26250,LH00995:25:23T55JLT4:4:2175:29995:13947,LH00995:25:23T55JLT4:4:2193:15813:26797,LH00995:25:23T55JLT4:4:2208:44540:17338,LH00995:25:23T55JLT4:4:2212:47242:19020,LH00995:25:23T55JLT4:4:2220:48003:7782,LH00995:25:23T55JLT4:4:2222:9632:17549,LH00995:25:23T55JLT4:4:2240:38780:12378,LH00995:25:23T55JLT4:4:2244:8896:23560,LH00995:25:23T55JLT4:4:2281:22188:2331,LH00995:25:23T55JLT4:5:1147:36256:10725,LH00995:25:23T55JLT4:5:1147:36264:10739,LH00995:25:23T55JLT4:5:1205:4026:7306,LH00995:25:23T55JLT4:5:1212:19599:17100,LH00995:25:23T55JLT4:5:1213:40512:21094,LH00995:25:23T55JLT4:5:1220:21387:18151,LH00995:25:23T55JLT4:5:1257:23264:2569,LH00995:25:23T55JLT4:5:1285:13135:23448,LH00995:25:23T55JLT4:5:1298:36167:4881,LH00995:25:23T55JLT4:5:1301:10603:24555,LH00995:25:23T55JLT4:5:1303:2335:27721,LH00995:25:23T55JLT4:5:1306:14260:24611,LH00995:25:23T55JLT4:5:1308:38109:14914,LH00995:25:23T55JLT4:5:1317:1016:25213,LH00995:25:23T55JLT4:5:1371:6242:4783,LH00995:25:23T55JLT4:5:1377:51579:4223,LH00995:25:23T55JLT4:5:1407:44743:2667,LH00995:25:23T55JLT4:5:1427:27835:29319,LH00995:25:23T55JLT4:5:1429:35698:2359,LH00995:25:23T55JLT4:5:1459:16144:13275,LH00995:25:23T55JLT4:5:1465:42971:23728,LH00995:25:23T55JLT4:5:2115:26856:1869,LH00995:25:23T55JLT4:5:2132:21492:23434,LH00995:25:23T55JLT4:5:2230:25076:14592,LH00995:25:23T55JLT4:5:2244:38983:13681,LH00995:25:23T55JLT4:5:2345:29372:15811,LH00995:25:23T55JLT4:5:2362:33247:18431,LH00995:25:23T55JLT4:5:2362:33368:18417,LH00995:25:23T55JLT4:5:2405:4794:28842,LH00995:25:23T55JLT4:5:2408:20812:18333,LH00995:25:23T55JLT4:5:2438:12836:21892,LH00995:25:23T55JLT4:5:2439:13370:23181,LH00995:25:23T55JLT4:5:2459:21079:14984,LH00995:25:23T55JLT4:5:2463:6534:13499,LH00995:25:23T55JLT4:5:2470:31823:20029,LH00995:25:23T55JLT4:6:1152:12213:14564,LH00995:25:23T55JLT4:6:1158:21832:15839,LH00995:25:23T55JLT4:6:1164:18620:21654,LH00995:25:23T55JLT4:6:1189:32227:15349,LH00995:25:23T55JLT4:6:1202:48480:28646,LH00995:25:23T55JLT4:6:1207:42647:16918,LH00995:25:23T55JLT4:6:1231:29088:28184,LH00995:25:23T55JLT4:6:1283:9462:24709,LH00995:25:23T55JLT4:6:1303:25472:6114,LH00995:25:23T55JLT4:6:1346:42089:3704,LH00995:25:23T55JLT4:6:1348:12269:16988,LH00995:25:23T55JLT4:6:1383:43165:21318,LH00995:25:23T55JLT4:6:1383:43181:21318,LH00995:25:23T55JLT4:6:1383:43189:21304,LH00995:25:23T55JLT4:6:1389:13378:20785,LH00995:25:23T55JLT4:6:1412:5571:3088,LH00995:25:23T55JLT4:6:1420:8985:23546,LH00995:25:23T55JLT4:6:1420:8993:23560,LH00995:25:23T55JLT4:6:1433:17172:15811,LH00995:25:23T55JLT4:6:2133:6145:22383,LH00995:25:23T55JLT4:6:2134:47639:11832,LH00995:25:23T55JLT4:6:2194:52040:19342,LH00995:25:23T55JLT4:6:2243:28207:12868,LH00995:25:23T55JLT4:6:2246:3152:17731,LH00995:25:23T55JLT4:6:2252:36823:9632,LH00995:25:23T55JLT4:6:2279:5870:3382,LH00995:25:23T55JLT4:6:2285:39298:5064,LH00995:25:23T55JLT4:6:2367:20287:15965,LH00995:25:23T55JLT4:6:2379:47024:12924,LH00995:25:23T55JLT4:6:2398:25666:13541,LH00995:25:23T55JLT4:8:1112:42866:26348,LH00995:25:23T55JLT4:8:1112:42882:26348,LH00995:25:23T55JLT4:8:1112:43092:27329,LH00995:25:23T55JLT4:8:1153:47518:19917,LH00995:25:23T55JLT4:8:1153:47526:19903,LH00995:25:23T55JLT4:8:1195:43553:4447,LH00995:25:23T55JLT4:8:1216:47121:8132,LH00995:25:23T55JLT4:8:1225:31046:28800,LH00995:25:23T55JLT4:8:1293:27543:19034,LH00995:25:23T55JLT4:8:1307:16225:16778,LH00995:25:23T55JLT4:8:1338:6792:14872,LH00995:25:23T55JLT4:8:1401:15902:19384,LH00995:25:23T55JLT4:8:1440:40714:23854,LH00995:25:23T55JLT4:8:1444:52153:2527,LH00995:25:23T55JLT4:8:1451:34201:2457,LH00995:25:23T55JLT4:8:1462:44686:14984,LH00995:25:23T55JLT4:8:1470:29477:2289,LH00995:25:23T55JLT4:8:2105:51846:23518,LH00995:25:23T55JLT4:8:2121:37243:27511,LH00995:25:23T55JLT4:8:2207:8435:27806,LH00995:25:23T55JLT4:8:2207:8443:27792,LH00995:25:23T55JLT4:8:2227:26014:8427,LH00995:25:23T55JLT4:8:2239:7601:24709,LH00995:25:23T55JLT4:8:2275:38610:10206,LH00995:25:23T55JLT4:8:2282:4770:23252,LH00995:25:23T55JLT4:8:2297:16751:7964,LH00995:25:23T55JLT4:8:2306:51077:6857,LH00995:25:23T55JLT4:8:2361:48415:16792,LH00995:25:23T55JLT4:8:2393:7618:16245,LH00995:25:23T55JLT4:8:2455:27729:6773,LH00995:25:23T55JLT4:8:2455:36936:10276,LH00995:25:23T55JLT4:1:1370:3540:19776,LH00995:25:23T55JLT4:1:1370:3548:19790,LH00995:25:23T55JLT4:2:1232:36467:4223,LH00995:25:23T55JLT4:6:1269:17940:10949,LH00995:25:23T55JLT4:2:1112:40301:21990,LH00995:25:23T55JLT4:4:1196:19405:26292,LH00995:25:23T55JLT4:6:2270:16598:2878	out-of-frame	Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(43%),Receptor_L_domain(100%)|	intron	intergenic	78	3	+/+	./-	.	82	ENST00000584601	.	inversion	0.040641988092156356	0.3333333333333333	0.18698766071274484																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	CWC25--ERBB2	ERBB2--CWC25	CWC25--ERBB2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	CWC25	39717480	38821073	chr17:39717480-chr17:38821073	+,-	Arriba	1	0	116		116	PASS	out-of-frame	ERBB2--CWC25	CWC25--ERBB2	confidence:medium;duplicates(167),mismatches(3)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	4215	167.0	3.0	0.0	0.0									71	45	False	duplicates(167),mismatches(3)		FAIL		False	chr17:39717480	chr17:38821073	chr17:39717480-chr17:38821073	.	.	medium	65535	4215	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(167),mismatches(3)	CCCTCCCTTCTGCGTGGCCCGCTGCCCCAGCGGTGTGAAACCTGACCTCTCCTACATGCCCATCTGGAAGTTTCCAGATGAGGAGGGCGCATGCCAGCCTTGCCCCATCAACTGCACCCACTC|AATCTGAAGAAGAGCTGGCACCCGCAGACCCTCAGGAATGTGGAGAAAGTGTGGAAGGCCGAGCAGAAGCATGAGGCTGAGCGGAAGAAGATTGAGGAGCTTCAGCGGGAGCTGCGAGA	ERBB2	CWC25	ENSG00000141736	ENSG00000273559	PPFCVARCPSGVKPDLSYMPIWKFPDEEGACQPCPINCTHs|i*	LH00995:25:23T55JLT4:1:1165:12658:8609,LH00995:25:23T55JLT4:1:1165:12666:8623,LH00995:25:23T55JLT4:1:1189:9219:17815,LH00995:25:23T55JLT4:1:1210:37324:15293,LH00995:25:23T55JLT4:1:1266:40681:18361,LH00995:25:23T55JLT4:1:1268:35140:14396,LH00995:25:23T55JLT4:1:1292:23749:24849,LH00995:25:23T55JLT4:1:1301:9600:18641,LH00995:25:23T55JLT4:1:1350:25343:15166,LH00995:25:23T55JLT4:1:1358:6339:5848,LH00995:25:23T55JLT4:1:2110:28595:6058,LH00995:25:23T55JLT4:1:2167:16015:21206,LH00995:25:23T55JLT4:1:2202:40317:14340,LH00995:25:23T55JLT4:1:2382:6938:24737,LH00995:25:23T55JLT4:1:2455:20076:28772,LH00995:25:23T55JLT4:2:1162:15004:21612,LH00995:25:23T55JLT4:2:1265:43634:15489,LH00995:25:23T55JLT4:2:1329:52113:23252,LH00995:25:23T55JLT4:2:1336:51627:9828,LH00995:25:23T55JLT4:2:1336:51643:9828,LH00995:25:23T55JLT4:2:1363:43214:12098,LH00995:25:23T55JLT4:2:1375:45196:15559,LH00995:25:23T55JLT4:2:1424:23013:28086,LH00995:25:23T55JLT4:2:2138:12075:23546,LH00995:25:23T55JLT4:2:2217:18474:13387,LH00995:25:23T55JLT4:2:2218:6186:6283,LH00995:25:23T55JLT4:2:2350:43772:23938,LH00995:25:23T55JLT4:2:2450:47024:29067,LH00995:25:23T55JLT4:2:2464:24356:1350,LH00995:25:23T55JLT4:2:2491:2772:6199,LH00995:25:23T55JLT4:3:1118:3710:3788,LH00995:25:23T55JLT4:3:1135:8014:14914,LH00995:25:23T55JLT4:3:1181:50737:23252,LH00995:25:23T55JLT4:3:1272:23045:17941,LH00995:25:23T55JLT4:3:1285:31386:26250,LH00995:25:23T55JLT4:3:1391:22107:10178,LH00995:25:23T55JLT4:3:1454:32227:29025,LH00995:25:23T55JLT4:3:2330:7011:1687,LH00995:25:23T55JLT4:3:2375:30755:16666,LH00995:25:23T55JLT4:3:2379:43756:6647,LH00995:25:23T55JLT4:4:1265:44848:28464,LH00995:25:23T55JLT4:4:1347:36685:9253,LH00995:25:23T55JLT4:4:1352:31232:8132,LH00995:25:23T55JLT4:4:1475:1849:18922,LH00995:25:23T55JLT4:4:2190:44670:8455,LH00995:25:23T55JLT4:5:1143:37882:28870,LH00995:25:23T55JLT4:5:1162:22900:6955,LH00995:25:23T55JLT4:5:1174:28830:11817,LH00995:25:23T55JLT4:5:1244:36232:17941,LH00995:25:23T55JLT4:5:1408:36903:2653,LH00995:25:23T55JLT4:5:2145:25820:27679,LH00995:25:23T55JLT4:5:2308:44314:17170,LH00995:25:23T55JLT4:5:2347:23781:12126,LH00995:25:23T55JLT4:5:2365:27956:7221,LH00995:25:23T55JLT4:5:2366:27737:28730,LH00995:25:23T55JLT4:5:2369:18604:16385,LH00995:25:23T55JLT4:5:2412:49216:2373,LH00995:25:23T55JLT4:5:2459:27640:27497,LH00995:25:23T55JLT4:6:1120:40220:10809,LH00995:25:23T55JLT4:6:1132:28417:13289,LH00995:25:23T55JLT4:6:1304:5943:14606,LH00995:25:23T55JLT4:6:1339:32519:3466,LH00995:25:23T55JLT4:6:1444:2934:25564,LH00995:25:23T55JLT4:6:1453:22180:20365,LH00995:25:23T55JLT4:6:2104:38012:28170,LH00995:25:23T55JLT4:6:2151:49030:20827,LH00995:25:23T55JLT4:6:2425:20327:7852,LH00995:25:23T55JLT4:6:2476:34185:9351,LH00995:25:23T55JLT4:6:2476:34201:9351,LH00995:25:23T55JLT4:6:2484:10093:22159,LH00995:25:23T55JLT4:8:1141:18580:6815,LH00995:25:23T55JLT4:8:1196:6218:15110,LH00995:25:23T55JLT4:8:1211:50365:6801,LH00995:25:23T55JLT4:8:1231:37502:16834,LH00995:25:23T55JLT4:8:1322:30164:22032,LH00995:25:23T55JLT4:8:1358:13442:8959,LH00995:25:23T55JLT4:8:1460:13224:16960,LH00995:25:23T55JLT4:8:2188:11841:18487,LH00995:25:23T55JLT4:8:2328:10481:5876,LH00995:25:23T55JLT4:8:2379:31273:12266,LH00995:25:23T55JLT4:8:2384:16379:22565,LH00995:25:23T55JLT4:8:2412:34412:20337,LH00995:25:23T55JLT4:8:2428:43861:27315,LH00995:25:23T55JLT4:8:2483:25149:11916,LH00995:25:23T55JLT4:1:1101:34776:23406,LH00995:25:23T55JLT4:1:1226:48917:2695,LH00995:25:23T55JLT4:1:1268:36062:25157,LH00995:25:23T55JLT4:1:1268:36070:25171,LH00995:25:23T55JLT4:1:1280:23296:13863,LH00995:25:23T55JLT4:1:1304:5547:20589,LH00995:25:23T55JLT4:1:1368:12666:15433,LH00995:25:23T55JLT4:1:1370:45738:8342,LH00995:25:23T55JLT4:1:1370:45746:8328,LH00995:25:23T55JLT4:1:1405:26200:3676,LH00995:25:23T55JLT4:1:1424:12747:14844,LH00995:25:23T55JLT4:1:1448:3751:22971,LH00995:25:23T55JLT4:1:1462:50616:6507,LH00995:25:23T55JLT4:1:1471:4123:6241,LH00995:25:23T55JLT4:1:1476:22592:19847,LH00995:25:23T55JLT4:1:2148:27713:6745,LH00995:25:23T55JLT4:1:2170:9106:14676,LH00995:25:23T55JLT4:1:2188:31831:19174,LH00995:25:23T55JLT4:1:2209:8224:22817,LH00995:25:23T55JLT4:1:2212:5361:28898,LH00995:25:23T55JLT4:1:2267:17140:4461,LH00995:25:23T55JLT4:1:2271:45042:14200,LH00995:25:23T55JLT4:1:2274:12593:4181,LH00995:25:23T55JLT4:1:2382:3912:8342,LH00995:25:23T55JLT4:1:2383:6582:15937,LH00995:25:23T55JLT4:1:2404:39662:8497,LH00995:25:23T55JLT4:1:2490:51223:22915,LH00995:25:23T55JLT4:2:1132:38675:6451,LH00995:25:23T55JLT4:2:1210:33692:11075,LH00995:25:23T55JLT4:2:1228:43343:12210,LH00995:25:23T55JLT4:2:1228:43351:12196,LH00995:25:23T55JLT4:2:1228:43359:12210,LH00995:25:23T55JLT4:2:1257:26872:7109,LH00995:25:23T55JLT4:2:1259:34946:16638,LH00995:25:23T55JLT4:2:1261:41717:16848,LH00995:25:23T55JLT4:2:1303:4317:24316,LH00995:25:23T55JLT4:2:1352:25141:6913,LH00995:25:23T55JLT4:2:1370:46611:20673,LH00995:25:23T55JLT4:2:1375:47615:25746,LH00995:25:23T55JLT4:2:1413:5644:10024,LH00995:25:23T55JLT4:2:1442:4835:9968,LH00995:25:23T55JLT4:2:1471:28813:9688,LH00995:25:23T55JLT4:2:1473:15020:26404,LH00995:25:23T55JLT4:2:2128:25100:9477,LH00995:25:23T55JLT4:2:2243:48553:2794,LH00995:25:23T55JLT4:2:2283:40722:3999,LH00995:25:23T55JLT4:2:2283:44581:1322,LH00995:25:23T55JLT4:2:2294:3977:25914,LH00995:25:23T55JLT4:2:2307:14203:16189,LH00995:25:23T55JLT4:2:2319:15902:26951,LH00995:25:23T55JLT4:2:2333:38489:20645,LH00995:25:23T55JLT4:2:2338:48529:8020,LH00995:25:23T55JLT4:2:2358:6598:17983,LH00995:25:23T55JLT4:2:2362:35148:13513,LH00995:25:23T55JLT4:2:2382:33797:23223,LH00995:25:23T55JLT4:2:2401:12027:4657,LH00995:25:23T55JLT4:2:2411:5846:2780,LH00995:25:23T55JLT4:2:2452:51643:24877,LH00995:25:23T55JLT4:2:2465:5077:26727,LH00995:25:23T55JLT4:2:2471:26208:14031,LH00995:25:23T55JLT4:2:2480:44451:23490,LH00995:25:23T55JLT4:3:1120:16978:1687,LH00995:25:23T55JLT4:3:1148:9939:10935,LH00995:25:23T55JLT4:3:1153:40325:27133,LH00995:25:23T55JLT4:3:1183:40503:24695,LH00995:25:23T55JLT4:3:1184:38076:14073,LH00995:25:23T55JLT4:3:1186:5886:1953,LH00995:25:23T55JLT4:3:1253:21581:27091,LH00995:25:23T55JLT4:3:1261:46684:6002,LH00995:25:23T55JLT4:3:1306:36499:3887,LH00995:25:23T55JLT4:3:1354:8127:15923,LH00995:25:23T55JLT4:3:1363:16662:24653,LH00995:25:23T55JLT4:3:1430:4276:4629,LH00995:25:23T55JLT4:3:1442:33676:15559,LH00995:25:23T55JLT4:3:1456:40414:18768,LH00995:25:23T55JLT4:3:1487:4818:16946,LH00995:25:23T55JLT4:3:2108:39605:20673,LH00995:25:23T55JLT4:4:1104:43772:24415,LH00995:25:23T55JLT4:4:1107:29436:21976,LH00995:25:23T55JLT4:4:1140:34428:4867,LH00995:25:23T55JLT4:4:1161:37235:28898,LH00995:25:23T55JLT4:4:1217:12908:13499,LH00995:25:23T55JLT4:4:1245:50972:27385,LH00995:25:23T55JLT4:4:1256:2270:26965,LH00995:25:23T55JLT4:4:1279:37696:16638,LH00995:25:23T55JLT4:4:1341:50665:3032,LH00995:25:23T55JLT4:4:1352:40900:13611,LH00995:25:23T55JLT4:4:1373:43998:18950,LH00995:25:23T55JLT4:4:1381:16468:15965,LH00995:25:23T55JLT4:4:1477:26119:9814,LH00995:25:23T55JLT4:4:1477:26136:9814,LH00995:25:23T55JLT4:4:2106:9632:20687,LH00995:25:23T55JLT4:4:2110:11574:16119,LH00995:25:23T55JLT4:4:2115:32600:3718,LH00995:25:23T55JLT4:4:2128:13637:9491,LH00995:25:23T55JLT4:4:2144:11331:10739,LH00995:25:23T55JLT4:4:2149:51093:20337,LH00995:25:23T55JLT4:4:2156:45948:1448,LH00995:25:23T55JLT4:4:2186:29784:6465,LH00995:25:23T55JLT4:4:2210:46134:24022,LH00995:25:23T55JLT4:4:2217:22665:20925,LH00995:25:23T55JLT4:4:2270:21209:9491,LH00995:25:23T55JLT4:5:1104:42558:19790,LH00995:25:23T55JLT4:5:1104:8192:22341,LH00995:25:23T55JLT4:5:1110:12237:14298,LH00995:25:23T55JLT4:5:1133:13281:20085,LH00995:25:23T55JLT4:5:1227:5943:16624,LH00995:25:23T55JLT4:5:1241:11808:9239,LH00995:25:23T55JLT4:5:1253:22163:25129,LH00995:25:23T55JLT4:5:1257:5191:13835,LH00995:25:23T55JLT4:5:1257:5207:13835,LH00995:25:23T55JLT4:5:1275:45236:13583,LH00995:25:23T55JLT4:5:1277:25691:6969,LH00995:25:23T55JLT4:5:1277:42453:20197,LH00995:25:23T55JLT4:5:1283:14324:28002,LH00995:25:23T55JLT4:5:1320:50640:25886,LH00995:25:23T55JLT4:5:1326:36766:18557,LH00995:25:23T55JLT4:5:1368:7399:6311,LH00995:25:23T55JLT4:5:1368:7407:6325,LH00995:25:23T55JLT4:5:1406:44015:6339,LH00995:25:23T55JLT4:5:1425:3524:26054,LH00995:25:23T55JLT4:5:1426:8872:3704,LH00995:25:23T55JLT4:5:1435:32858:21234,LH00995:25:23T55JLT4:5:2121:9753:23532,LH00995:25:23T55JLT4:5:2187:6679:12546,LH00995:25:23T55JLT4:5:2202:5741:13611,LH00995:25:23T55JLT4:5:2256:13264:14676,LH00995:25:23T55JLT4:5:2264:17034:11986,LH00995:25:23T55JLT4:5:2273:10676:24204,LH00995:25:23T55JLT4:5:2329:44710:12140,LH00995:25:23T55JLT4:5:2340:43675:6255,LH00995:25:23T55JLT4:5:2378:44759:27806,LH00995:25:23T55JLT4:5:2392:41968:11986,LH00995:25:23T55JLT4:5:2405:25755:3438,LH00995:25:23T55JLT4:5:2419:40512:4475,LH00995:25:23T55JLT4:5:2473:35989:7768,LH00995:25:23T55JLT4:6:1129:41256:9604,LH00995:25:23T55JLT4:6:1141:17156:8441,LH00995:25:23T55JLT4:6:1167:29655:11789,LH00995:25:23T55JLT4:6:1167:29671:11789,LH00995:25:23T55JLT4:6:1181:37866:26853,LH00995:25:23T55JLT4:6:1196:27681:7614,LH00995:25:23T55JLT4:6:1220:3249:18908,LH00995:25:23T55JLT4:6:1220:3257:18894,LH00995:25:23T55JLT4:6:1277:33627:13345,LH00995:25:23T55JLT4:6:1315:41741:23167,LH00995:25:23T55JLT4:6:1407:40156:2261,LH00995:25:23T55JLT4:6:2128:21007:26993,LH00995:25:23T55JLT4:6:2135:23029:5386,LH00995:25:23T55JLT4:6:2135:41458:26264,LH00995:25:23T55JLT4:6:2194:40447:12210,LH00995:25:23T55JLT4:6:2194:42947:16119,LH00995:25:23T55JLT4:6:2198:19122:16021,LH00995:25:23T55JLT4:6:2206:23692:21080,LH00995:25:23T55JLT4:6:2211:23838:26376,LH00995:25:23T55JLT4:6:2240:17997:19370,LH00995:25:23T55JLT4:6:2272:48318:7095,LH00995:25:23T55JLT4:6:2293:5466:25662,LH00995:25:23T55JLT4:6:2324:12633:15825,LH00995:25:23T55JLT4:6:2348:29048:1154,LH00995:25:23T55JLT4:6:2355:36903:9267,LH00995:25:23T55JLT4:6:2391:2610:14466,LH00995:25:23T55JLT4:6:2428:25351:25129,LH00995:25:23T55JLT4:6:2439:17552:8567,LH00995:25:23T55JLT4:6:2465:13620:21570,LH00995:25:23T55JLT4:6:2468:32098:2934,LH00995:25:23T55JLT4:8:1169:18240:23322,LH00995:25:23T55JLT4:8:1190:27657:14634,LH00995:25:23T55JLT4:8:1191:18280:27287,LH00995:25:23T55JLT4:8:1205:41102:23882,LH00995:25:23T55JLT4:8:1240:22341:16526,LH00995:25:23T55JLT4:8:1260:44605:11621,LH00995:25:23T55JLT4:8:1260:44613:11607,LH00995:25:23T55JLT4:8:1277:16023:27665,LH00995:25:23T55JLT4:8:1289:12399:1967,LH00995:25:23T55JLT4:8:1348:36636:14326,LH00995:25:23T55JLT4:8:1374:6873:19973,LH00995:25:23T55JLT4:8:1378:9389:9393,LH00995:25:23T55JLT4:8:1381:47801:11243,LH00995:25:23T55JLT4:8:1381:47809:11229,LH00995:25:23T55JLT4:8:1381:47809:11257,LH00995:25:23T55JLT4:8:1389:43327:20113,LH00995:25:23T55JLT4:8:1402:19324:9590,LH00995:25:23T55JLT4:8:1417:17633:18459,LH00995:25:23T55JLT4:8:1428:50139:10304,LH00995:25:23T55JLT4:8:1429:9325:1266,LH00995:25:23T55JLT4:8:1440:5676:25409,LH00995:25:23T55JLT4:8:1447:7278:27203,LH00995:25:23T55JLT4:8:1465:2116:18011,LH00995:25:23T55JLT4:8:1477:36361:5442,LH00995:25:23T55JLT4:8:2112:19283:25914,LH00995:25:23T55JLT4:8:2178:31491:15307,LH00995:25:23T55JLT4:8:2180:23692:10598,LH00995:25:23T55JLT4:8:2215:42130:7446,LH00995:25:23T55JLT4:8:2219:38020:21430,LH00995:25:23T55JLT4:8:2262:17107:8889,LH00995:25:23T55JLT4:8:2362:51239:25185,LH00995:25:23T55JLT4:8:2366:50673:4279,LH00995:25:23T55JLT4:8:2430:21435:26867,LH00995:25:23T55JLT4:8:2432:1785:17464,LH00995:25:23T55JLT4:8:2479:28409:5848,LH00995:25:23T55JLT4:8:2496:15457:8861	out-of-frame	Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(92%),Receptor_L_domain(100%)|N-terminal_domain_of_CBF1_interacting_co-repressor_CIR(100%),Pre-mRNA_splicing_factor(100%)	CDS/splice-site	CDS/splice-site	71	45	+/+	-/-	.	116	ENST00000584601	ENST00000614790	inversion	0.001082218089808859	0.01056338028169014	0.0058227991857495																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	CWC25--ERBB2	ERBB2--CWC25	CWC25--ERBB2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	CWC25	39716605	38821073	chr17:39716605-chr17:38821073	+,-	Arriba	1	0	7		7	PASS	in-frame	ERBB2--CWC25	CWC25--ERBB2	confidence:medium;duplicates(9)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	4215	9.0	0.0	0.0	0.0									3	4	True	duplicates(9)		FAIL		False	chr17:39716605	chr17:38821073	chr17:39716605-chr17:38821073	.	.	medium	65535	4215	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(7.0<8.0)	duplicates(9)	GGCCCACCCAGTGTGTCAACTGCAGCCAGTTCCTTCGGGGCCAGGAGTGCGTGGAGGAATGCCGAGTACTGCAGGG___GCTCCCCAGGGAGTATGTGAATGCCAGGCACTGTTTGCCGTGCCACCCTGAGTGTCAGCCCCAGAATGGCTCAGTGACCTGTTTTGGACCG|AATCTGAAGAAGAGCTGGCACCCGCAGACCCTCAGGAATGTGGAGAAAGTGTGGAAGGCCGAGCAGAAGCATGAGGCTGAGCGGAAGAAGATTGAGGAGCTTCAGCGGGAGCTGCGAGAAGAGAGAGCCCGGGAAGAGATGCAGCGCTATGCGGAGGATGTTGGGGCCGTCAAGTAAGTGA	ERBB2	CWC25	ENSG00000141736	ENSG00000273559	PTQCVNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGP|NLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVk*	LH00995:25:23T55JLT4:1:2417:28247:14564,LH00995:25:23T55JLT4:3:1372:9632:22901,LH00995:25:23T55JLT4:3:1476:47526:14578,LH00995:25:23T55JLT4:3:2280:32187:16203,LH00995:25:23T55JLT4:4:1245:35771:28688,LH00995:25:23T55JLT4:4:2197:24768:11313,LH00995:25:23T55JLT4:6:1368:11121:17268,LH00995:25:23T55JLT4:6:1426:1874:1252,LH00995:25:23T55JLT4:6:2322:37251:23181,LH00995:25:23T55JLT4:2:1248:41822:20505,LH00995:25:23T55JLT4:2:1477:49006:20421,LH00995:25:23T55JLT4:3:1316:12342:3270,LH00995:25:23T55JLT4:5:2455:8726:17016,LH00995:25:23T55JLT4:6:1480:21023:3957,LH00995:25:23T55JLT4:6:2152:6072:20267,LH00995:25:23T55JLT4:6:2396:14559:14704	in-frame	Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(52%),Receptor_L_domain(100%)|N-terminal_domain_of_CBF1_interacting_co-repressor_CIR(100%),Pre-mRNA_splicing_factor(100%)	CDS/splice-site	CDS/splice-site	3	4	+/+	-/-	.	7	ENST00000584601	ENST00000614790	inversion	4.577497024626934e-05	0.0009480919649205973	0.0004969334675834333																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	CWC25--ERBB2	ERBB2--CWC25	CWC25--ERBB2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	CWC25	39717480	38821073	chr17:39717480-chr17:38821073	+,-	STAR-Fusion	1	0	121	0.4112	121	PASS	out-of-frame	ERBB2--CWC25	CWC25--ERBB2	"[""INTRACHROMOSOMAL[chr17:0.86Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6402	False	False	False	GT	AG	121		False																																										1	ENST00000269571.10	1-1898	ENST00000614790.5	19-1278	0.4112	PASS	atggagctggcggccttgtgccgctgggggctcctcctcgccctcttgccccccggagccgcgagcacccaagtgtgcaccggcacagacatgaagctgcggctccctgccagtcccgagacccacctggacatgctccgccacctctaccagggctgccaggtggtgcagggaaacctggaactcacctacctgcccaccaatgccagcctgtccttcctgcaggatatccaggaggtgcagggctacgtgctcatcgctcacaaccaagtgaggcaggtcccactgcagaggctgcggattgtgcgaggcacccagctctttgaggacaactatgccctggccgtgctagacaatggagacccgctgaacaataccacccctgtcacaggggcctccccaggaggcctgcgggagctgcagcttcgaagcctcacagagatcttgaaaggaggggtcttgatccagcggaacccccagctctgctaccaggacacgattttgtggaaggacatcttccacaagaacaaccagctggctctcacactgatagacaccaaccgctctcgggcctgccacccctgttctccgatgtgtaagggctcccgctgctggggagagagttctgaggattgtcagagcctgacgcgcactgtctgtgccggtggctgtgcccgctgcaaggggccactgcccactgactgctgccatgagcagtgtgctgccggctgcacgggccccaagcactctgactgcctggcctgcctccacttcaaccacagtggcatctgtgagctgcactgcccagccctggtcacctacaacacagacacgtttgagtccatgcccaatcccgagggccggtatacattcggcgccagctgtgtgactgcctgtccctacaactacctttctacggacgtgggatcctgcaccctcgtctgccccctgcacaaccaagaggtgacagcagaggatggaacacagcggtgtgagaagtgcagcaagccctgtgcccgagtgtgctatggtctgggcatggagcacttgcgagaggtgagggcagttaccagtgccaatatccaggagtttgctggctgcaagaagatctttgggagcctggcatttctgccggagagctttgatggggacccagcctccaacactgccccgctccagccagagcagctccaagtgtttgagactctggaagagatcacaggttacctatacatctcagcatggccggacagcctgcctgacctcagcgtcttccagaacctgcaagtaatccggggacgaattctgcacaatggcgcctactcgctgaccctgcaagggctgggcatcagctggctggggctgcgctcactgagggaactgggcagtggactggccctcatccaccataacacccacctctgcttcgtgcacacggtgccctgggaccagctctttcggaacccgcaccaagctctgctccacactgccaaccggccagaggacgagtgtgtgggcgagggcctggcctgccaccagctgtgcgcccgagggcactgctggggtccagggcccacccagtgtgtcaactgcagccagttccttcggggccaggagtgcgtggaggaatgccgagtactgcaggggctccccagggagtatgtgaatgccaggcactgtttgccgtgccaccctgagtgtcagccccagaatggctcagtgacctgttttggaccggaggctgaccagtgtgtggcctgtgcccactataaggaccctcccttctgcgtggcccgctgccccagcggtgtgaaacctgacctctcctacatgcccatctggaagtttccagatgaggagggcgcatgccagccttgccccatcaactgcacccactcAATCTGAAGAAGAGCTGGCACCCGCAGACCCTCAGGAATGTGGAGAAAGTGTGGAAGGCCGAGCAGAAGCATGAGGCTGAGCGGAAGAAGATTGAGGAGCTTCAGCGGGAGCTGCGAGAAGAGAGAGCCCGGGAAGAGATGCAGCGCTATGCGGAGGATGTTGGGGCCGTCAAGAAAAAAGAAGAAAAGTTGGACTGGATGTACCAGGGTCCTGGTGGGATGGTGAACCGTGACGAGTACCTGCTGGGGCGCCCCATTGACAAATATGTTTTTGAGAAGATGGAGGAGAAGGAGGCAGGCTGCTCTTCTGAAACAGGACTTCTCCCAGGCTCTATCTTTGCCCCATCAGGTGCCAATTCCCTTCTTGACATGGCCAGCAAGATCCGGGAGGACCCACTCTTCATCATCAGGAAGAAGGAGGAGGAGAAAAAACGAGAGGTATTAAATAATCCAGTGAAAATGAAGAAAATCAAAGAATTGTTGCAAATGAGTCTGGAAAAAAAGGAGAAGAAGAAAAAGAAGGAGAAGAAAAAGAAGCACAAGAAACATAAGCACAGAAGCTCGAGTAGTGATCGTTCCAGCAGCGAGGATGAGCACAGTGCAGGGAGATCACAGAAGAAGATGGCAAATTCCTCCCCTGTTTTGTCCAAAGTCCCTGGATATGGCTTACAGGTCCGGAACTCTGACCGTAACCAGGGTCTTCAGGGTCCTCTGACAGCAGAGCAAAAGAGAGGGCATGGGATGAAGAACCATTCCAGATCCAGAAGCTCCTCCCACTCACCCCCAAGACATGCCAGCAAGAAGAGCACCAGGGAAGCAGGGTCCCGGGACAGGAGGTCTCGATCCCTGGGCAGAAGGTCACGGTCCCCAAGACCCAGCAAACTGCACAACTCTAAGGTGAACAGGAGAGAGACAGGCCAAACTAGGAGCCCATCACCTAAAAAAGAGGTCTACCAAAGGCGACATGCTCCCGGATACACCAGAAAACTCTCTGCAGAGGAATTAGAGCGAAAACGGCAAGAGATGATGGAAAACGCCAAATGGAGGGAGGAGGAGAGACTGAACATCCTCAAGAGGCATGCTAAGGATGAGGAACGGGAGCAGAGGCTAGAGAAGCTGGACTCCCGGGATGGGAAGTTCATCCACCGCATGAAGCTGGAGAGTGCATCTACTTCCTCCCTGGAGGATCGGGTGAAGCGGAATATCTACTCTTTACAGAGAACTTCGGTAGCTCTGGAGAAGAACTTTATGAAAAGATGA	chr17|+|[0]39700239-39700311[0]|[1]39706990-39707141[2]|[0]39708321-39708534[0]|[1]39709318-39709452[0]|[1]39709813-39709881[0]|[1]39710086-39710201[2]|[0]39710340-39710481[0]|[1]39711928-39712047[0]|[1]39712322-39712448[1]|[2]39715286-39715359[0]|[1]39715446-39715536[1]|[2]39715740-39715939[0]|[1]39716301-39716433[1]|[2]39716515-39716605[2]|[0]39717320-39717480[1]<==>chr17|-|[2]38802092-38802206[2]|[1]38802700-38802861[2]|[1]38806297-38806395[2]|[1]38806765-38806976[0]|[2]38809702-38809765[2]|[1]38810468-38810595[0]|[2]38812795-38812864[2]|[1]38814861-38815097[2]|[1]38820901-38821073[0]	MELAALCRWGLLLALLPPGAASTQVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSFLQDIQEVQGYVLIAHNQVRQVPLQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGGLRELQLRSLTEILKGGVLIQRNPQLCYQDTILWKDIFHKNNQLALTLIDTNRSRACHPCSPMCKGSRCWGESSEDCQSLTRTVCAGGCARCKGPLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMPNPEGRYTFGASCVTACPYNYLSTDVGSCTLVCPLHNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLREVRAVTSANIQEFAGCKKIFGSLAFLPESFDGDPASNTAPLQPEQLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNGAYSLTLQGLGISWLGLRSLRELGSGLALIHHNTHLCFVHTVPWDQLFRNPHQALLHTANRPEDECVGEGLACHQLCARGHCWGPGPTQCVNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGPEADQCVACAHYKDPPFCVARCPSGVKPDLSYMPIWKFPDEEGACQPCPINCTHSI*RRAGTRRPSGMWRKCGRPSRSMRLSGRRLRSFSGSCEKREPGKRCSAMRRMLGPSRKKKKSWTGCTRVLVGW*TVTSTCWGAPLTNMFLRRWRRRRQAALLKQDFSQALSLPHQVPIPFLTWPARSGRTHSSSSGRRRRRKNERY*IIQ*K*RKSKNCCK*VWKKRRRRKRRRRKRSTRNISTEARVVIVPAARMSTVQGDHRRRWQIPPLFCPKSLDMAYRSGTLTVTRVFRVL*QQSKREGMG*RTIPDPEAPPTHPQDMPARRAPGKQGPGTGGLDPWAEGHGPQDPANCTTLR*TGERQAKLGAHHLKKRSTKGDMLPDTPENSLQRN*SENGKR*WKTPNGGRRRD*TSSRGMLRMRNGSRG*RSWTPGMGSSSTA*SWRVHLLPPWRIG*SGISTLYRELR*LWRRTL*KD	ERBB2--CWC25	121	LH00995:25:23T55JLT4:1:1101:34776:23406,LH00995:25:23T55JLT4:1:1165:12658:8609,LH00995:25:23T55JLT4:1:1189:9219:17815,LH00995:25:23T55JLT4:1:1210:37324:15293,LH00995:25:23T55JLT4:1:1226:48917:2695,LH00995:25:23T55JLT4:1:1266:40681:18361,LH00995:25:23T55JLT4:1:1268:35140:14396,LH00995:25:23T55JLT4:1:1268:36062:25157,LH00995:25:23T55JLT4:1:1280:23296:13863,LH00995:25:23T55JLT4:1:1301:9600:18641,LH00995:25:23T55JLT4:1:1304:5547:20589,LH00995:25:23T55JLT4:1:1358:6339:5848,LH00995:25:23T55JLT4:1:1368:12666:15433,LH00995:25:23T55JLT4:1:1370:45738:8342,LH00995:25:23T55JLT4:1:1405:26200:3676,LH00995:25:23T55JLT4:1:1424:12747:14844,LH00995:25:23T55JLT4:1:1448:3751:22971,LH00995:25:23T55JLT4:1:1462:50616:6507,LH00995:25:23T55JLT4:1:1471:4123:6241,LH00995:25:23T55JLT4:1:1476:22592:19847,LH00995:25:23T55JLT4:1:2110:28595:6058,LH00995:25:23T55JLT4:1:2148:27713:6745,LH00995:25:23T55JLT4:1:2167:16015:21206,LH00995:25:23T55JLT4:1:2170:9106:14676,LH00995:25:23T55JLT4:1:2188:31831:19174,LH00995:25:23T55JLT4:1:2202:40317:14340,LH00995:25:23T55JLT4:1:2209:8224:22817,LH00995:25:23T55JLT4:1:2212:5361:28898,LH00995:25:23T55JLT4:1:2271:45042:14200,LH00995:25:23T55JLT4:1:2274:12593:4181,LH00995:25:23T55JLT4:1:2382:3912:8342,LH00995:25:23T55JLT4:1:2382:6938:24737,LH00995:25:23T55JLT4:1:2455:20076:28772,LH00995:25:23T55JLT4:2:1132:38675:6451,LH00995:25:23T55JLT4:2:1162:15004:21612,LH00995:25:23T55JLT4:2:1210:33692:11075,LH00995:25:23T55JLT4:2:1228:43343:12210,LH00995:25:23T55JLT4:2:1257:26872:7109,LH00995:25:23T55JLT4:2:1265:43634:15489,LH00995:25:23T55JLT4:2:1303:4317:24316,LH00995:25:23T55JLT4:2:1329:52113:23252,LH00995:25:23T55JLT4:2:1363:43214:12098,LH00995:25:23T55JLT4:2:1370:46611:20673,LH00995:25:23T55JLT4:2:1375:45196:15559,LH00995:25:23T55JLT4:2:1375:47615:25746,LH00995:25:23T55JLT4:2:1413:5644:10024,LH00995:25:23T55JLT4:2:1424:23013:28086,LH00995:25:23T55JLT4:2:2128:25100:9477,LH00995:25:23T55JLT4:2:2138:12075:23546,LH00995:25:23T55JLT4:2:2217:18474:13387,LH00995:25:23T55JLT4:2:2218:6186:6283,LH00995:25:23T55JLT4:2:2283:44581:1322,LH00995:25:23T55JLT4:2:2294:3977:25914,LH00995:25:23T55JLT4:2:2307:14203:16189,LH00995:25:23T55JLT4:2:2319:15902:26951,LH00995:25:23T55JLT4:2:2338:48529:8020,LH00995:25:23T55JLT4:2:2350:43772:23938,LH00995:25:23T55JLT4:2:2358:6598:17983,LH00995:25:23T55JLT4:2:2362:35148:13513,LH00995:25:23T55JLT4:2:2382:33797:23223,LH00995:25:23T55JLT4:2:2401:12027:4657,LH00995:25:23T55JLT4:2:2452:51643:24877,LH00995:25:23T55JLT4:2:2464:24356:1350,LH00995:25:23T55JLT4:2:2465:5077:26727,LH00995:25:23T55JLT4:2:2480:44451:23490,LH00995:25:23T55JLT4:2:2491:2772:6199,LH00995:25:23T55JLT4:3:1184:38076:14073,LH00995:25:23T55JLT4:3:1186:5886:1953,LH00995:25:23T55JLT4:3:1253:21581:27091,LH00995:25:23T55JLT4:3:1261:46684:6002,LH00995:25:23T55JLT4:3:1285:31386:26250,LH00995:25:23T55JLT4:3:1306:36499:3887,LH00995:25:23T55JLT4:3:1442:33676:15559,LH00995:25:23T55JLT4:3:1487:4818:16946,LH00995:25:23T55JLT4:3:2375:30755:16666,LH00995:25:23T55JLT4:4:1104:43772:24415,LH00995:25:23T55JLT4:4:1107:29436:21976,LH00995:25:23T55JLT4:4:1140:34428:4867,LH00995:25:23T55JLT4:4:1161:37235:28898,LH00995:25:23T55JLT4:4:1245:50972:27385,LH00995:25:23T55JLT4:4:1265:44848:28464,LH00995:25:23T55JLT4:4:1341:50665:3032,LH00995:25:23T55JLT4:4:1352:31232:8132,LH00995:25:23T55JLT4:4:2190:44670:8455,LH00995:25:23T55JLT4:5:1104:8192:22341,LH00995:25:23T55JLT4:5:1162:22900:6955,LH00995:25:23T55JLT4:5:1174:28830:11817,LH00995:25:23T55JLT4:5:1244:36232:17941,LH00995:25:23T55JLT4:5:1283:14324:28002,LH00995:25:23T55JLT4:5:1320:50640:25886,LH00995:25:23T55JLT4:5:1425:3524:26054,LH00995:25:23T55JLT4:5:1435:32858:21234,LH00995:25:23T55JLT4:5:2145:25820:27679,LH00995:25:23T55JLT4:5:2365:27956:7221,LH00995:25:23T55JLT4:5:2369:18604:16385,LH00995:25:23T55JLT4:5:2392:41968:11986,LH00995:25:23T55JLT4:5:2412:49216:2373,LH00995:25:23T55JLT4:5:2419:40512:4475,LH00995:25:23T55JLT4:5:2473:35989:7768,LH00995:25:23T55JLT4:6:1132:28417:13289,LH00995:25:23T55JLT4:6:1277:33627:13345,LH00995:25:23T55JLT4:6:1304:5943:14606,LH00995:25:23T55JLT4:6:1339:32519:3466,LH00995:25:23T55JLT4:6:1444:2934:25564,LH00995:25:23T55JLT4:6:2135:23029:5386,LH00995:25:23T55JLT4:6:2194:40447:12210,LH00995:25:23T55JLT4:6:2272:48318:7095,LH00995:25:23T55JLT4:6:2428:25351:25129,LH00995:25:23T55JLT4:6:2439:17552:8567,LH00995:25:23T55JLT4:6:2476:34185:9351,LH00995:25:23T55JLT4:8:1141:18580:6815,LH00995:25:23T55JLT4:8:1322:30164:22032,LH00995:25:23T55JLT4:8:1358:13442:8959,LH00995:25:23T55JLT4:8:1381:47801:11243,LH00995:25:23T55JLT4:8:1389:43327:20113,LH00995:25:23T55JLT4:8:1428:50139:10304,LH00995:25:23T55JLT4:8:2112:19283:25914,LH00995:25:23T55JLT4:8:2262:17107:8889,LH00995:25:23T55JLT4:8:2428:43861:27315,LH00995:25:23T55JLT4:8:2430:21435:26867,LH00995:25:23T55JLT4:8:2496:15457:8861	YES_LDAS	GT	1.6402	chr17:39717480:+	ERBB2^ENSG00000141736.14	Recep_L_domain|52-172|4.1e-36^Furin-like|190-343|2.1e-28^GF_recep_IV|195-280|1.3e-05^GF_recep_IV|307-356|0.014^Recep_L_domain|366-485|4.7e-22^Furin-like|496-562|7e-06^GF_recep_IV|511-642|1.2e-44^Furin-like|563-612|0.11^PK_Tyr_Ser-Thr|722-975|1.7e-89^Pkinase|722-974|5.1e-40^Kinase-like|804-919|0.00015^APH|822-869|1.5e-05	Cir_N-PARTIAL|~19-47|3.9e-19^CWC25|22-41|0.52^CWC25|66-157|1.3e-23^SPC25|128-186|0.00049^Cir_N|143-153|0.12^Cir_N|161-168|1.2^CWC25|172-215|1.5^Cir_N|173-185|3^CWC25|340-340|0.76^Cir_N|340-349|3^Cir_N|367-377|3	FRAMESHIFT	AG	1.7968	chr17:38821073:-	CWC25^ENSG00000273559.5	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr17:0.86Mb]""]"		False	chr17:39717480-chr17:38821073	121.0	0.0		121	1173_9C	STAR-Fusion
fp_audit	1173_9C	fusion	ERBB2--HAP1	HAP1--ERBB2	ERBB2--HAP1	FP	FP		Arriba		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	HAP1	ERBB2	41731638	39693261	chr17:41731638-chr17:39693261	-,+	Arriba	1	0	6		6	PASS	out-of-frame	HAP1--ERBB2	ERBB2--HAP1	confidence:medium;duplicates(1)	medium	inversion	CDS/splice-site	5'UTR/splice-site	381	13	1.0	0.0	0.0	0.0									4	2	False	duplicates(1)		FAIL		False	chr17:41731638	chr17:39693261	chr17:41731638-chr17:39693261	.	.	medium	381	13	upstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(1)	CCTGTGATGCCCCTAAGCT___GATTTCGCAGGAGGCATTGCTGCACCAGCACCACTGCCCACAGCTGGAAGCCTTGCAGGAGAAGCTGAGGCTGCTGGAGGAGGAGAATCATCAGCTGAGAGAAGAG|CCTACTCAATGTGAAGATGATGAGGATGAAAACCTTTGTGATGATCCACTTCCACTTAATGAATG___GTGGCAAAGCAAAGCTATATTCAAGACCACATGCAAAGCTACTCCCTGAGCAAAGAGTCACAGATAAAACGGGGGCACCAGTAGAATG	HAP1	ERBB2	ENSG00000173805	ENSG00000141736	CDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREE|ptqceddedenlcddplplnewwqskaifkttckatp*	LH00995:25:23T55JLT4:1:2464:29121:7614,LH00995:25:23T55JLT4:8:1162:15643:5064,LH00995:25:23T55JLT4:1:1249:20246:2555,LH00995:25:23T55JLT4:2:2396:6817:21080,LH00995:25:23T55JLT4:6:1280:1332:9730,LH00995:25:23T55JLT4:6:2259:43537:26082,LH00995:25:23T55JLT4:6:2259:43553:26082	out-of-frame	HAP1_N-terminal_conserved_region(62%)|Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%)	CDS/splice-site	5'UTR/splice-site	4	2	-/-	+/+	.	6	ENST00000393939	ENST00000584601	inversion	0.01038961038961039	0.13333333333333333	0.07186147186147186																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--HAP1	HAP1--ERBB2	ERBB2--HAP1	FP	FP		Arriba		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	HAP1	ERBB2	41731493	39693261	chr17:41731493-chr17:39693261	-,+	Arriba	1	0	4		4	PASS	out-of-frame	HAP1--ERBB2	ERBB2--HAP1	confidence:medium;duplicates(2)	medium	inversion	CDS/splice-site	5'UTR/splice-site	233	13	2.0	0.0	0.0	0.0									1	3	False	duplicates(2)		FAIL		False	chr17:41731493	chr17:39693261	chr17:41731493-chr17:39693261	.	.	medium	233	13	upstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(2)	AGCTGGAAGCCTTGCAGGAGAAGCTGAGGCTGCTGGAGGAGGAGAATCATCAGCTGAGAGAAGAG___GCCTCTCAACTCGACACTCTTGAGGATGAGGAACAGATGCTCATTCTGGAGTGTGTGGAGCAGTTTT|CCTACTCAATGTGAAGATGATGAGGATGAAAACCTTTGTGATGATCCACTTCCACTTAATGAATG___GTGGCAAAGCAAAGCTATATTCAAG	HAP1	ERBB2	ENSG00000173805	ENSG00000141736	LEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQF|sysm*	LH00995:25:23T55JLT4:1:1246:51441:14914,LH00995:25:23T55JLT4:1:1246:51457:14914,LH00995:25:23T55JLT4:3:2108:24849:17927,LH00995:25:23T55JLT4:6:2404:51020:5638,LH00995:25:23T55JLT4:2:2183:2125:18137,LH00995:25:23T55JLT4:8:2411:6712:6072	out-of-frame	HAP1_N-terminal_conserved_region(68%)|Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	3	-/-	+/+	.	4	ENST00000393939	ENST00000584601	inversion	0.004273504273504274	0.1875	0.09588675213675214																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39700311	41771862	chr17:39700311-chr17:41771862	+,-	Arriba	1	0	201		201	PASS	in-frame	ERBB2--JUP	ERBB2--JUP	confidence:medium;duplicates(240),mismatches(1)	medium	inversion	CDS/splice-site	5'UTR/splice-site	65535	22776	240.0	1.0	0.0	0.0									147	54	True	duplicates(240),mismatches(1)		FAIL		False	chr17:39700311	chr17:41771862	chr17:39700311-chr17:41771862	.	.	medium	65535	22776	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(240),mismatches(1)	AGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|TAGCCACGATGGAGGTGATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGGCAGCAGACATACACCTACGACTCGG	ERBB2	JUP	ENSG00000141736	ENSG00000173801	MELAALCRWGLLLALLPPGAASTQ|vatMEVMNLMEQPIKVTEWQQTYTYDS	LH00995:25:23T55JLT4:1:1127:25043:5316,LH00995:25:23T55JLT4:1:1137:51287:20673,LH00995:25:23T55JLT4:1:1145:45422:15307,LH00995:25:23T55JLT4:1:1181:13693:26488,LH00995:25:23T55JLT4:1:1186:8410:26671,LH00995:25:23T55JLT4:1:1196:30472:10739,LH00995:25:23T55JLT4:1:1210:51255:1140,LH00995:25:23T55JLT4:1:1231:28296:2513,LH00995:25:23T55JLT4:1:1239:40948:7081,LH00995:25:23T55JLT4:1:1246:11104:5414,LH00995:25:23T55JLT4:1:1267:37753:27161,LH00995:25:23T55JLT4:1:1283:15360:20099,LH00995:25:23T55JLT4:1:1304:11873:6213,LH00995:25:23T55JLT4:1:1311:5781:5890,LH00995:25:23T55JLT4:1:1314:29048:18585,LH00995:25:23T55JLT4:1:1320:13006:10556,LH00995:25:23T55JLT4:1:1320:13014:10542,LH00995:25:23T55JLT4:1:1337:32931:21920,LH00995:25:23T55JLT4:1:1363:45455:17100,LH00995:25:23T55JLT4:1:1376:23134:5596,LH00995:25:23T55JLT4:1:1422:42388:19833,LH00995:25:23T55JLT4:1:1457:32737:26264,LH00995:25:23T55JLT4:1:1464:32381:24218,LH00995:25:23T55JLT4:1:1496:25246:2331,LH00995:25:23T55JLT4:1:2130:23134:13135,LH00995:25:23T55JLT4:1:2159:23150:2597,LH00995:25:23T55JLT4:1:2189:8127:15503,LH00995:25:23T55JLT4:1:2191:24267:6409,LH00995:25:23T55JLT4:1:2219:40714:12084,LH00995:25:23T55JLT4:1:2236:32664:25101,LH00995:25:23T55JLT4:1:2302:23612:1715,LH00995:25:23T55JLT4:1:2306:2367:2976,LH00995:25:23T55JLT4:1:2312:47137:13541,LH00995:25:23T55JLT4:1:2317:30019:11579,LH00995:25:23T55JLT4:1:2338:51134:7235,LH00995:25:23T55JLT4:1:2349:36353:12518,LH00995:25:23T55JLT4:1:2387:36531:14480,LH00995:25:23T55JLT4:1:2389:48852:5778,LH00995:25:23T55JLT4:1:2395:9964:12882,LH00995:25:23T55JLT4:1:2412:45074:11789,LH00995:25:23T55JLT4:1:2417:8694:28534,LH00995:25:23T55JLT4:1:2427:34582:16035,LH00995:25:23T55JLT4:1:2444:8467:15839,LH00995:25:23T55JLT4:1:2445:31839:6128,LH00995:25:23T55JLT4:1:2454:30723:8342,LH00995:25:23T55JLT4:1:2488:35520:24274,LH00995:25:23T55JLT4:1:2495:39711:1322,LH00995:25:23T55JLT4:1:2498:32049:3606,LH00995:25:23T55JLT4:2:1134:7917:28898,LH00995:25:23T55JLT4:2:1139:40908:20715,LH00995:25:23T55JLT4:2:1145:6331:23826,LH00995:25:23T55JLT4:2:1186:41199:24218,LH00995:25:23T55JLT4:2:1205:10959:16680,LH00995:25:23T55JLT4:2:1235:42421:14256,LH00995:25:23T55JLT4:2:1242:35140:24260,LH00995:25:23T55JLT4:2:1248:49111:11944,LH00995:25:23T55JLT4:2:1254:31969:21234,LH00995:25:23T55JLT4:2:1263:26572:18417,LH00995:25:23T55JLT4:2:1275:36321:27932,LH00995:25:23T55JLT4:2:1348:41410:7488,LH00995:25:23T55JLT4:2:1350:27236:1490,LH00995:25:23T55JLT4:2:1357:17973:29557,LH00995:25:23T55JLT4:2:1357:31338:10725,LH00995:25:23T55JLT4:2:1375:24728:10767,LH00995:25:23T55JLT4:2:1379:13475:26671,LH00995:25:23T55JLT4:2:1388:37267:1490,LH00995:25:23T55JLT4:2:1394:42202:25087,LH00995:25:23T55JLT4:2:1417:4285:25942,LH00995:25:23T55JLT4:2:1418:14874:22929,LH00995:25:23T55JLT4:2:1428:37898:29319,LH00995:25:23T55JLT4:2:1433:34468:24415,LH00995:25:23T55JLT4:2:1433:41466:25017,LH00995:25:23T55JLT4:2:1436:7868:25732,LH00995:25:23T55JLT4:2:1446:15263:27525,LH00995:25:23T55JLT4:2:1456:19356:6899,LH00995:25:23T55JLT4:2:1488:48585:12938,LH00995:25:23T55JLT4:2:1494:52105:4825,LH00995:25:23T55JLT4:2:2105:33409:24036,LH00995:25:23T55JLT4:2:2107:43602:10052,LH00995:25:23T55JLT4:2:2108:12019:20505,LH00995:25:23T55JLT4:2:2120:28409:10416,LH00995:25:23T55JLT4:2:2135:45519:4853,LH00995:25:23T55JLT4:2:2142:9349:24849,LH00995:25:23T55JLT4:2:2146:38335:19734,LH00995:25:23T55JLT4:2:2159:37276:2121,LH00995:25:23T55JLT4:2:2161:40876:27637,LH00995:25:23T55JLT4:2:2170:43958:19833,LH00995:25:23T55JLT4:2:2207:42340:22131,LH00995:25:23T55JLT4:2:2223:41507:14270,LH00995:25:23T55JLT4:2:2227:14478:18880,LH00995:25:23T55JLT4:2:2235:13216:24288,LH00995:25:23T55JLT4:2:2243:25917:19973,LH00995:25:23T55JLT4:2:2254:25116:20295,LH00995:25:23T55JLT4:2:2265:49548:21556,LH00995:25:23T55JLT4:2:2268:12472:4867,LH00995:25:23T55JLT4:2:2307:50616:19538,LH00995:25:23T55JLT4:2:2311:9236:14592,LH00995:25:23T55JLT4:2:2317:14688:13247,LH00995:25:23T55JLT4:2:2328:26872:26222,LH00995:25:23T55JLT4:2:2328:34023:19861,LH00995:25:23T55JLT4:2:2361:33951:22621,LH00995:25:23T55JLT4:2:2367:16420:26839,LH00995:25:23T55JLT4:2:2384:10490:21164,LH00995:25:23T55JLT4:2:2418:41677:20281,LH00995:25:23T55JLT4:2:2435:11388:27904,LH00995:25:23T55JLT4:2:2444:6760:14564,LH00995:25:23T55JLT4:2:2454:10028:28660,LH00995:25:23T55JLT4:2:2479:31831:25564,LH00995:25:23T55JLT4:2:2488:21233:22761,LH00995:25:23T55JLT4:3:1104:6922:28604,LH00995:25:23T55JLT4:3:1106:5361:21780,LH00995:25:23T55JLT4:3:1110:36337:11761,LH00995:25:23T55JLT4:3:1113:11355:9716,LH00995:25:23T55JLT4:3:1113:11371:9716,LH00995:25:23T55JLT4:3:1145:10384:28240,LH00995:25:23T55JLT4:3:1192:48634:18852,LH00995:25:23T55JLT4:3:1194:19664:21444,LH00995:25:23T55JLT4:3:1243:45883:5988,LH00995:25:23T55JLT4:3:1245:48035:12210,LH00995:25:23T55JLT4:3:1248:28959:27483,LH00995:25:23T55JLT4:3:1264:18758:10458,LH00995:25:23T55JLT4:3:1283:8936:29655,LH00995:25:23T55JLT4:3:1295:40973:12056,LH00995:25:23T55JLT4:3:1311:4050:17520,LH00995:25:23T55JLT4:3:1348:35488:8749,LH00995:25:23T55JLT4:3:1350:39185:1224,LH00995:25:23T55JLT4:3:1359:20804:20982,LH00995:25:23T55JLT4:3:1366:23369:12000,LH00995:25:23T55JLT4:3:1389:26920:10668,LH00995:25:23T55JLT4:3:1410:23668:25493,LH00995:25:23T55JLT4:3:1456:40625:21766,LH00995:25:23T55JLT4:3:1459:24485:7320,LH00995:25:23T55JLT4:3:1470:14381:11481,LH00995:25:23T55JLT4:3:1496:44063:14914,LH00995:25:23T55JLT4:3:2136:5498:13583,LH00995:25:23T55JLT4:3:2140:38780:22719,LH00995:25:23T55JLT4:3:2142:42866:22649,LH00995:25:23T55JLT4:3:2174:2756:14382,LH00995:25:23T55JLT4:3:2175:25027:21878,LH00995:25:23T55JLT4:3:2196:47501:8230,LH00995:25:23T55JLT4:3:2198:11234:5582,LH00995:25:23T55JLT4:3:2201:25933:23924,LH00995:25:23T55JLT4:3:2214:15780:1406,LH00995:25:23T55JLT4:3:2234:18183:1084,LH00995:25:23T55JLT4:3:2237:11007:26516,LH00995:25:23T55JLT4:3:2259:46886:16217,LH00995:25:23T55JLT4:3:2268:33619:23336,LH00995:25:23T55JLT4:3:2278:12973:16750,LH00995:25:23T55JLT4:3:2290:20626:3074,LH00995:25:23T55JLT4:3:2294:31362:12784,LH00995:25:23T55JLT4:3:2295:49184:12854,LH00995:25:23T55JLT4:3:2341:24437:10122,LH00995:25:23T55JLT4:3:2358:38028:5610,LH00995:25:23T55JLT4:3:2371:8200:18768,LH00995:25:23T55JLT4:3:2385:7852:17605,LH00995:25:23T55JLT4:3:2391:47275:2093,LH00995:25:23T55JLT4:3:2397:11201:6143,LH00995:25:23T55JLT4:3:2442:47048:15321,LH00995:25:23T55JLT4:3:2443:15020:25704,LH00995:25:23T55JLT4:3:2445:9939:14326,LH00995:25:23T55JLT4:3:2447:15716:6815,LH00995:25:23T55JLT4:3:2466:20788:14676,LH00995:25:23T55JLT4:3:2480:11735:17717,LH00995:25:23T55JLT4:3:2481:31289:1504,LH00995:25:23T55JLT4:3:2488:49079:5554,LH00995:25:23T55JLT4:4:1122:7545:4937,LH00995:25:23T55JLT4:4:1134:3589:25718,LH00995:25:23T55JLT4:4:1149:15020:8132,LH00995:25:23T55JLT4:4:1160:44637:9884,LH00995:25:23T55JLT4:4:1165:50454:26404,LH00995:25:23T55JLT4:4:1185:19728:6283,LH00995:25:23T55JLT4:4:1189:39832:29389,LH00995:25:23T55JLT4:4:1222:12391:7193,LH00995:25:23T55JLT4:4:1227:37834:17184,LH00995:25:23T55JLT4:4:1238:8605:17170,LH00995:25:23T55JLT4:4:1247:11040:15643,LH00995:25:23T55JLT4:4:1248:4746:21864,LH00995:25:23T55JLT4:4:1263:9195:20127,LH00995:25:23T55JLT4:4:1276:28304:17044,LH00995:25:23T55JLT4:4:1276:28312:17058,LH00995:25:23T55JLT4:4:1280:42744:8062,LH00995:25:23T55JLT4:4:1337:51724:17422,LH00995:25:23T55JLT4:4:1338:13806:16596,LH00995:25:23T55JLT4:4:1378:50017:4349,LH00995:25:23T55JLT4:4:1387:25586:25507,LH00995:25:23T55JLT4:4:1410:13758:20883,LH00995:25:23T55JLT4:4:1421:28288:26488,LH00995:25:23T55JLT4:4:1432:6558:19314,LH00995:25:23T55JLT4:4:1447:25165:21696,LH00995:25:23T55JLT4:4:2103:9284:16610,LH00995:25:23T55JLT4:4:2128:15756:26642,LH00995:25:23T55JLT4:4:2133:22317:2415,LH00995:25:23T55JLT4:4:2135:26912:25760,LH00995:25:23T55JLT4:4:2141:12561:1462,LH00995:25:23T55JLT4:4:2144:13054:11005,LH00995:25:23T55JLT4:4:2163:50980:22663,LH00995:25:23T55JLT4:4:2178:16411:3032,LH00995:25:23T55JLT4:4:2183:40868:3214,LH00995:25:23T55JLT4:4:2195:40083:15475,LH00995:25:23T55JLT4:4:2198:8184:22803,LH00995:25:23T55JLT4:4:2269:2853:12280,LH00995:25:23T55JLT4:4:2293:7949:24415,LH00995:25:23T55JLT4:4:2309:50535:27133,LH00995:25:23T55JLT4:4:2313:6695:15293,LH00995:25:23T55JLT4:4:2315:16169:25928,LH00995:25:23T55JLT4:4:2319:5708:19300,LH00995:25:23T55JLT4:4:2348:18021:29445,LH00995:25:23T55JLT4:4:2357:40795:16400,LH00995:25:23T55JLT4:5:1129:27438:8987,LH00995:25:23T55JLT4:5:1134:42947:7880,LH00995:25:23T55JLT4:5:1136:40859:21500,LH00995:25:23T55JLT4:5:1140:36200:3676,LH00995:25:23T55JLT4:5:1146:38214:25073,LH00995:25:23T55JLT4:5:1146:38222:25087,LH00995:25:23T55JLT4:5:1168:22261:1364,LH00995:25:23T55JLT4:5:1169:40981:2850,LH00995:25:23T55JLT4:5:1187:2011:11271,LH00995:25:23T55JLT4:5:1189:5239:15293,LH00995:25:23T55JLT4:5:1217:33409:4979,LH00995:25:23T55JLT4:5:1237:48642:14101,LH00995:25:23T55JLT4:5:1250:46199:12084,LH00995:25:23T55JLT4:5:1276:34695:6731,LH00995:25:23T55JLT4:5:1283:13976:282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5:23T55JLT4:3:1121:44961:28492,LH00995:25:23T55JLT4:3:1121:49710:13709,LH00995:25:23T55JLT4:3:1134:4600:6759,LH00995:25:23T55JLT4:3:1256:31515:6969,LH00995:25:23T55JLT4:3:1328:15206:19132,LH00995:25:23T55JLT4:3:1371:7205:26881,LH00995:25:23T55JLT4:3:1401:50082:22761,LH00995:25:23T55JLT4:3:1413:27883:6563,LH00995:25:23T55JLT4:3:2165:17010:7600,LH00995:25:23T55JLT4:3:2172:41070:13345,LH00995:25:23T55JLT4:3:2202:38198:26923,LH00995:25:23T55JLT4:3:2206:44637:10136,LH00995:25:23T55JLT4:3:2220:42275:20197,LH00995:25:23T55JLT4:3:2271:47064:24429,LH00995:25:23T55JLT4:3:2337:26314:17492,LH00995:25:23T55JLT4:3:2349:44281:27315,LH00995:25:23T55JLT4:3:2455:37947:2275,LH00995:25:23T55JLT4:3:2463:29008:3466,LH00995:25:23T55JLT4:3:2498:30520:3088,LH00995:25:23T55JLT4:4:1177:41070:19566,LH00995:25:23T55JLT4:4:1206:8904:5302,LH00995:25:23T55JLT4:4:1235:42696:6128,LH00995:25:23T55JLT4:4:1296:5814:3508,LH00995:25:23T55JLT4:4:1338:39460:5344,LH00995:25:23T55JLT4:4:1491:51983:7754,LH00995:25:23T55JLT4:4:2115:34727:3536,LH00995:25:23T55JLT4:4:2145:33255:11439,LH00995:25:23T55JLT4:4:2172:41830:8721,LH00995:25:23T55JLT4:4:2187:45390:23658,LH00995:25:23T55JLT4:4:2215:39824:21612,LH00995:25:23T55JLT4:4:2295:42049:6829,LH00995:25:23T55JLT4:4:2322:30779:23630,LH00995:25:23T55JLT4:4:2322:46506:6507,LH00995:25:23T55JLT4:5:1105:6857:3550,LH00995:25:23T55JLT4:5:1154:44977:20421,LH00995:25:23T55JLT4:5:1167:10562:1701,LH00995:25:23T55JLT4:5:1180:43060:17016,LH00995:25:23T55JLT4:5:1226:9389:2415,LH00995:25:23T55JLT4:5:1228:35674:27707,LH00995:25:23T55JLT4:5:1250:36839:13611,LH00995:25:23T55JLT4:5:1311:3645:10010,LH00995:25:23T55JLT4:5:1354:13305:1098,LH00995:25:23T55JLT4:5:1392:29355:3228,LH00995:25:23T55JLT4:5:1411:13402:11523,LH00995:25:23T55JLT4:5:1445:24817:10837,LH00995:25:23T55JLT4:5:1474:46700:16400,LH00995:25:23T55JLT4:5:2117:19469:12560,LH00995:25:23T55JLT4:5:2145:4398:9267,LH00995:25:23T55JLT4:5:2174:31871:15489,LH00995:25:23T55JLT4:5:2175:19987:22145,LH00995:25:23T55JLT4:5:2247:28724:9702,LH00995:25:23T55JLT4:5:2267:45908:20323,LH00995:25:23T55JLT4:5:2341:51846:22873,LH00995:25:23T55JLT4:5:2441:10611:1252,LH00995:25:23T55JLT4:5:2441:24356:12168,LH00995:25:23T55JLT4:5:2481:5943:3816,LH00995:25:23T55JLT4:5:2495:48391:8342,LH00995:25:23T55JLT4:6:1139:48917:8384,LH00995:25:23T55JLT4:6:1159:23312:17983,LH00995:25:23T55JLT4:6:1212:36030:22607,LH00995:25:23T55JLT4:6:1294:32761:29389,LH00995:25:23T55JLT4:6:1311:52007:8048,LH00995:25:23T55JLT4:6:1404:51029:4615,LH00995:25:23T55JLT4:6:1488:48966:2724,LH00995:25:23T55JLT4:6:2113:27131:20925,LH00995:25:23T55JLT4:6:2226:31346:1518,LH00995:25:23T55JLT4:6:2289:7618:27315,LH00995:25:23T55JLT4:6:2314:1955:4923,LH00995:25:23T55JLT4:6:2316:16282:1294,LH00995:25:23T55JLT4:6:2326:29930:16329,LH00995:25:23T55JLT4:6:2346:49977:9884,LH00995:25:23T55JLT4:6:2403:9697:19566,LH00995:25:23T55JLT4:6:2436:9462:25830,LH00995:25:23T55JLT4:6:2453:42987:25101,LH00995:25:23T55JLT4:8:1166:51951:14844,LH00995:25:23T55JLT4:8:1188:33174:11495,LH00995:25:23T55JLT4:8:1215:8815:13695,LH00995:25:23T55JLT4:8:1241:43659:11019,LH00995:25:23T55JLT4:8:1260:14373:2724,LH00995:25:23T55JLT4:8:1260:33983:15587,LH00995:25:23T55JLT4:8:1264:23757:17829,LH00995:25:23T55JLT4:8:1392:22398:25788,LH00995:25:23T55JLT4:8:1403:11064:14592,LH00995:25:23T55JLT4:8:1406:7003:4559,LH00995:25:23T55JLT4:8:1408:7682:20393,LH00995:25:23T55JLT4:8:1410:16242:1532,LH00995:25:23T55JLT4:8:1410:32915:16091,LH00995:25:23T55JLT4:8:1466:7739:15082,LH00995:25:23T55JLT4:8:1483:31969:8763,LH00995:25:23T55JLT4:8:2174:3524:17338,LH00995:25:23T55JLT4:8:2191:2036:20449,LH00995:25:23T55JLT4:8:2472:41288:18684,LH00995:25:23T55JLT4:8:2477:34015:26965	in-frame	|Armadillo/beta-catenin-like_repeat(100%)	CDS/splice-site	5'UTR/splice-site	147	54	+/+	-/-	.	201	ENST00000269571	ENST00000393931	inversion	0.002238056088426053	0.0023653088042049934	0.002301682446315523																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39700311	41771859	chr17:39700311-chr17:41771859	+,-	Arriba	1	0	17		17	PASS	out-of-frame	ERBB2--JUP	ERBB2--JUP	confidence:medium;duplicates(16)	medium	inversion	CDS/splice-site	5'UTR/splice-site	65535	34421	16.0	0.0	0.0	0.0									10	7	False	duplicates(16)		FAIL		False	chr17:39700311	chr17:41771859	chr17:39700311-chr17:41771859	.	.	medium	65535	34421	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(16)	AGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|CCACGATGGAGGTGATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGGCAGCAGACATACACCTACGACTCGGG	ERBB2	JUP	ENSG00000141736	ENSG00000173801	MELAALCRWGLLLALLPPGAASTQ|atmevmnlmeqpikvtewqqtytyds	LH00995:25:23T55JLT4:1:1169:27026:3200,LH00995:25:23T55JLT4:1:2135:25100:1995,LH00995:25:23T55JLT4:1:2135:33344:19552,LH00995:25:23T55JLT4:2:1125:34323:26516,LH00995:25:23T55JLT4:2:2490:32511:14298,LH00995:25:23T55JLT4:3:1232:21921:2121,LH00995:25:23T55JLT4:3:1373:12941:22018,LH00995:25:23T55JLT4:3:1436:15594:17983,LH00995:25:23T55JLT4:3:2132:12140:3564,LH00995:25:23T55JLT4:3:2187:5352:20785,LH00995:25:23T55JLT4:3:2187:9033:23854,LH00995:25:23T55JLT4:4:1185:12229:18011,LH00995:25:23T55JLT4:4:1188:44484:9590,LH00995:25:23T55JLT4:4:1196:31952:28632,LH00995:25:23T55JLT4:4:2207:21104:5106,LH00995:25:23T55JLT4:5:2302:28247:11369,LH00995:25:23T55JLT4:6:1217:5458:26348,LH00995:25:23T55JLT4:6:2229:10603:27133,LH00995:25:23T55JLT4:8:2433:3306:25704,LH00995:25:23T55JLT4:1:1437:37963:16287,LH00995:25:23T55JLT4:1:2322:47129:2373,LH00995:25:23T55JLT4:1:2396:1582:20701,LH00995:25:23T55JLT4:1:2492:29719:17058,LH00995:25:23T55JLT4:2:1181:45900:28436,LH00995:25:23T55JLT4:2:2188:35374:6311,LH00995:25:23T55JLT4:3:1161:26831:13345,LH00995:25:23T55JLT4:4:1490:40965:17787,LH00995:25:23T55JLT4:4:2249:50058:28828,LH00995:25:23T55JLT4:5:1130:32260:17170,LH00995:25:23T55JLT4:8:1263:14826:3144,LH00995:25:23T55JLT4:8:2114:3864:28016,LH00995:25:23T55JLT4:8:2153:1785:18950,LH00995:25:23T55JLT4:8:2177:30391:18585	out-of-frame	|Armadillo/beta-catenin-like_repeat(100%)	CDS/splice-site	5'UTR/splice-site	10	7	+/+	-/-	.	17	ENST00000269571	ENST00000589036	inversion	0.0001525669387443741	0.00020332287672824445	0.00017794490773630927																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39715939	41755432	chr17:39715939-chr17:41755432	+,-	Arriba	1	0	3		3	PASS	out-of-frame	ERBB2--JUP	ERBB2--JUP	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	3'UTR/splice-site	65535	2942	3.0	0.0	0.0	0.0									3	0	False	duplicates(3)		FAIL		False	chr17:39715939	chr17:41755432	chr17:39715939-chr17:41755432	.	.	low	65535	2942	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(3.0<8.0)	duplicates(3)	CCCACCTCTGCTTCGTGCACACGGTGCCCTGGGACCAGCTCTTTCGGAACCCGCACCAAGCTCTGCTCCACACTGCCAACCGGCCAGAGGACGAGTGTG|GTGCGGTTCCTCATCTGAGAGGCTCTCCGTGCAGGCGATGGG	ERBB2	JUP	ENSG00000141736	ENSG00000173801	HLCFVHTVPWDQLFRNPHQALLHTANRPEDEC|gavphlrgspcrrw	LH00995:25:23T55JLT4:3:2217:32640:2583,LH00995:25:23T55JLT4:4:1179:11622:18417,LH00995:25:23T55JLT4:5:2243:33263:26895,LH00995:25:23T55JLT4:6:1487:45058:15461,LH00995:25:23T55JLT4:6:2205:3031:5610,LH00995:25:23T55JLT4:6:2245:45034:12336	out-of-frame	Furin-like_cysteine_rich_region(100%),Receptor_L_domain(100%)|	CDS/splice-site	3'UTR/splice-site	3	0	+/+	-/-	.	3	ENST00000584601	ENST00000310706	inversion	4.577497024626934e-05	0.0	2.288748512313467e-05																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39700311	41769677	chr17:39700311-chr17:41769677	+,-	Arriba	1	0	2		2	PASS	in-frame	ERBB2--JUP	ERBB2--JUP	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	CDS/splice-site	65535	30534	2.0	0.0	0.0	0.0									2	0	True	duplicates(2)		FAIL		False	chr17:39700311	chr17:41769677	chr17:39700311-chr17:41769677	.	.	low	65535	30534	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(2)	GCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|GTGAcCTGGAGTACCAGATGTCCACAAC	ERBB2	JUP	ENSG00000141736	ENSG00000173801	MELAALCRWGLLLALLPPGAASTQ|gDLEYQMST	LH00995:25:23T55JLT4:5:1261:27980:2611,LH00995:25:23T55JLT4:6:1123:31734:13093,LH00995:25:23T55JLT4:6:2215:3726:20323,LH00995:25:23T55JLT4:8:1282:23045:25900	in-frame	|Armadillo/beta-catenin-like_repeat(100%)	CDS/splice-site	CDS/splice-site	2	0	+/+	-/-	.	2	ENST00000269571	ENST00000393931	inversion	3.051711247081801e-05	0.0	1.5258556235409006e-05																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39695181	41771862	chr17:39695181-chr17:41771862	+,-	Arriba	1	0	1		1	PASS		ERBB2--JUP	ERBB2--JUP	confidence:low	low	inversion	5'UTR/splice-site	5'UTR/splice-site	2216	22776													0	1				FAIL		False	chr17:39695181	chr17:41771862	chr17:39695181-chr17:41771862	.	.	low	2216	22776	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CTGCGCAGGCAGTGATGAGAGTGACATGTACTGTTGTGGACATGCACAAAAGTGAG|TAGCCACGATGGAGGTGATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGGCAGCAGA	ERBB2	JUP	ENSG00000141736	ENSG00000173801	.	LH00995:25:23T55JLT4:4:2153:52177:24625	.	|Armadillo/beta-catenin-like_repeat(100%)	5'UTR/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000584601	ENST00000393931	inversion	0.0	4.390393818325504e-05	2.195196909162752e-05																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39700311	41772926	chr17:39700311-chr17:41772926	+,-	Arriba	1	0	1		1	PASS	out-of-frame	ERBB2--JUP	ERBB2--JUP	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	5'UTR/splice-site	65535	77	3.0	0.0	0.0	0.0									0	1	False	duplicates(3)		FAIL		False	chr17:39700311	chr17:41772926	chr17:39700311-chr17:41772926	.	.	low	65535	77	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	CCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|CCTCTGACCTCTtCAGGTCAGTTCCCAGGACAGTGGAGCCAAACACAGACCAAGCGGGAAGTTCACCTCCCTGGTACAAAGTTCGGCCCTGCTACTCATTAACCTTCAG___TAGCCACGATGGAGGTGATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGG	ERBB2	JUP	ENSG00000141736	ENSG00000173801	LCRWGLLLALLPPGAASTQ|asdlfrsvprtvepntdqagssppwykvrpcysltfsshdggdepdgaayqgd*	LH00995:25:23T55JLT4:1:2236:2578:29431,LH00995:25:23T55JLT4:3:2348:16144:2878,LH00995:25:23T55JLT4:6:2247:21532:7306,LH00995:25:23T55JLT4:6:2247:21541:7292	out-of-frame	|Armadillo/beta-catenin-like_repeat(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000269571	ENST00000424457	inversion	0.0	0.01282051282051282	0.00641025641025641																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39725853	41769677	chr17:39725853-chr17:41769677	+,-	Arriba	1	0	1		1	PASS	in-frame	ERBB2--JUP	ERBB2--JUP	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	CDS/splice-site	65535	30534	3.0	0.0	0.0	0.0									1	0	True	duplicates(3)		FAIL		False	chr17:39725853	chr17:41769677	chr17:39725853-chr17:41769677	.	.	low	65535	30534	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	GGTGTGACTGTGTGGGAGCTGATGACTTTTGGGGCCAAACCTTACGATGGGATCCCAGCCCGGGAGATCCCTGACCTGCTGGAAAAGGGGGAGCGGCTGCCCCAGCCCCCCATCTGCACCATTGATGTCTACATGATCATGGTCAAAT|GTGAcCTGGAGTACCAGATGTCCACAACAGCCAGGGCCAAACGGGTGCGGG	ERBB2	JUP	ENSG00000141736	ENSG00000173801	GVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVK|cDLEYQMSTTARAKRVR	LH00995:25:23T55JLT4:4:2167:36280:25255,LH00995:25:23T55JLT4:6:1449:49265:3999,LH00995:25:23T55JLT4:8:1241:17277:21150,LH00995:25:23T55JLT4:8:1241:17285:21136	in-frame	Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(93%),Receptor_L_domain(100%)|Armadillo/beta-catenin-like_repeat(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000584601	ENST00000393931	inversion	1.52587890625e-05	0.0	7.62939453125e-06																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--JUP	ERBB2--JUP	ERBB2--JUP	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	JUP	39700311	41771862	chr17:39700311-chr17:41771862	+,-	STAR-Fusion	1	0	213	0.7239	213	PASS		ERBB2--JUP	ERBB2--JUP	"[""DEEPEST2019"",""ChimerSeq"",""INTRACHROMOSOMAL[chr17:2.02Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.5301	False	False	False	GT	AG	213				ChimerSeq;DEEPEST2019																																								1	.	.	.	.	0.7239	PASS	.	.	.	ERBB2--JUP	213	LH00995:25:23T55JLT4:1:1127:25043:5316,LH00995:25:23T55JLT4:1:1137:51287:20673,LH00995:25:23T55JLT4:1:1168:31265:25059,LH00995:25:23T55JLT4:1:1181:13693:26488,LH00995:25:23T55JLT4:1:1186:8410:26671,LH00995:25:23T55JLT4:1:1196:30472:10739,LH00995:25:23T55JLT4:1:1205:19647:11159,LH00995:25:23T55JLT4:1:1210:51255:1140,LH00995:25:23T55JLT4:1:1230:22366:25199,LH00995:25:23T55JLT4:1:1231:28296:2513,LH00995:25:23T55JLT4:1:1235:36912:24022,LH00995:25:23T55JLT4:1:1239:40948:7081,LH00995:25:23T55JLT4:1:1246:11104:5414,LH00995:25:23T55JLT4:1:1256:50810:26264,LH00995:25:23T55JLT4:1:1267:37753:27161,LH00995:25:23T55JLT4:1:1283:15360:20099,LH00995:25:23T55JLT4:1:1294:22714:14059,LH00995:25:23T55JLT4:1:1304:11873:6213,LH00995:25:23T55JLT4:1:1314:29048:18585,LH00995:25:23T55JLT4:1:1320:13006:10556,LH00995:25:23T55JLT4:1:1337:32931:21920,LH00995:25:23T55JLT4:1:1363:45455:17100,LH00995:25:23T55JLT4:1:1371:22341:19300,LH00995:25:23T55JLT4:1:1376:23134:5596,LH00995:25:23T55JLT4:1:1397:36539:5470,LH00995:25:23T55JLT4:1:1422:42388:19833,LH00995:25:23T55JLT4:1:1457:32737:26264,LH00995:25:23T55JLT4:1:1464:32381:24218,LH00995:25:23T55JLT4:1:1479:25990:19594,LH00995:25:23T55JLT4:1:1496:25246:2331,LH00995:25:23T55JLT4:1:2130:23134:13135,LH00995:25:23T55JLT4:1:2134:1704:26993,LH00995:25:23T55JLT4:1:2159:23150:2597,LH00995:25:23T55JLT4:1:2189:8127:15503,LH00995:25:23T55JLT4:1:2191:24267:6409,LH00995:25:23T55JLT4:1:2219:40714:12084,LH00995:25:23T55JLT4:1:2236:32664:25101,LH00995:25:23T55JLT4:1:2246:8370:2555,LH00995:25:23T55JLT4:1:2302:23612:1715,LH00995:25:23T55JLT4:1:2306:2367:2976,LH00995:25:23T55JLT4:1:2312:47137:13541,LH00995:25:23T55JLT4:1:2317:30019:11579,LH00995:25:23T55JLT4:1:2349:36353:12518,LH00995:25:23T55JLT4:1:2372:48165:7614,LH00995:25:23T55JLT4:1:2387:36531:14480,LH00995:25:23T55JLT4:1:2389:48852:5778,LH00995:25:23T55JLT4:1:2395:9964:12882,LH00995:25:23T55JLT4:1:2412:45074:11789,LH00995:25:23T55JLT4:1:2417:8694:28534,LH00995:25:23T55JLT4:1:2427:34582:16035,LH00995:25:23T55JLT4:1:2431:22964:24218,LH00995:25:23T55JLT4:1:2445:31839:6128,LH00995:25:23T55JLT4:1:2454:30723:8342,LH00995:25:23T55JLT4:1:2471:23919:7628,LH00995:25:23T55JLT4:1:2495:39711:1322,LH00995:25:23T55JLT4:1:2498:32049:3606,LH00995:25:23T55JLT4:2:1120:3573:11593,LH00995:25:23T55JLT4:2:1123:6291:2653,LH00995:25:23T55JLT4:2:1134:7917:28898,LH00995:25:23T55JLT4:2:1186:41199:24218,LH00995:25:23T55JLT4:2:1242:35140:24260,LH00995:25:23T55JLT4:2:1248:49111:11944,LH00995:25:23T55JLT4:2:1263:26572:18417,LH00995:25:23T55JLT4:2:1275:36321:27932,LH00995:25:23T55JLT4:2:1276:44403:7824,LH00995:25:23T55JLT4:2:1348:41410:7488,LH00995:25:23T55JLT4:2:1350:27236:1490,LH00995:25:23T55JLT4:2:1357:17973:29557,LH00995:25:23T55JLT4:2:1357:31338:10725,LH00995:25:23T55JLT4:2:1379:13475:26671,LH00995:25:23T55JLT4:2:1388:37267:1490,LH00995:25:23T55JLT4:2:1394:42202:25087,LH00995:25:23T55JLT4:2:1417:4285:25942,LH00995:25:23T55JLT4:2:1418:14874:22929,LH00995:25:23T55JLT4:2:1433:34468:24415,LH00995:25:23T55JLT4:2:1433:41466:25017,LH00995:25:23T55JLT4:2:1446:15263:27525,LH00995:25:23T55JLT4:2:1456:19356:6899,LH00995:25:23T55JLT4:2:1462:6825:11789,LH00995:25:23T55JLT4:2:1488:48585:12938,LH00995:25:23T55JLT4:2:2107:43602:10052,LH00995:25:23T55JLT4:2:2116:47598:12518,LH00995:25:23T55JLT4:2:2135:45519:4853,LH00995:25:23T55JLT4:2:2142:9349:24849,LH00995:25:23T55JLT4:2:2146:38335:19734,LH00995:25:23T55JLT4:2:2159:37276:2121,LH00995:25:23T55JLT4:2:2161:40876:27637,LH00995:25:23T55JLT4:2:2202:2982:15138,LH00995:25:23T55JLT4:2:2207:42340:22131,LH00995:25:23T55JLT4:2:2243:25917:19973,LH00995:25:23T55JLT4:2:2243:28279:6128,LH00995:25:23T55JLT4:2:2243:45107:16470,LH00995:25:23T55JLT4:2:2254:25116:20295,LH00995:25:23T55JLT4:2:2276:43028:2387,LH00995:25:23T55JLT4:2:2307:50616:19538,LH00995:25:23T55JLT4:2:2311:9236:14592,LH00995:25:23T55JLT4:2:2367:16420:26839,LH00995:25:23T55JLT4:2:2380:43901:15054,LH00995:25:23T55JLT4:2:2418:41677:20281,LH00995:25:23T55JLT4:2:2435:11388:27904,LH00995:25:23T55JLT4:2:2444:6760:14564,LH00995:25:23T55JLT4:3:1104:6922:28604,LH00995:25:23T55JLT4:3:1106:5361:21780,LH00995:25:23T55JLT4:3:1113:11355:9716,LH00995:25:23T55JLT4:3:1134:4600:6759,LH00995:25:23T55JLT4:3:1145:10384:28240,LH00995:25:23T55JLT4:3:1194:19664:21444,LH00995:25:23T55JLT4:3:1243:45883:5988,LH00995:25:23T55JLT4:3:1248:28959:27483,LH00995:25:23T55JLT4:3:1256:31515:6969,LH00995:25:23T55JLT4:3:1283:8936:29655,LH00995:25:23T55JLT4:3:1311:4050:17520,LH00995:25:23T55JLT4:3:1328:15206:19132,LH00995:25:23T55JLT4:3:1348:35488:8749,LH00995:25:23T55JLT4:3:1371:7205:26881,LH00995:25:23T55JLT4:3:1401:50082:22761,LH00995:25:23T55JLT4:3:1410:23668:25493,LH00995:25:23T55JLT4:3:1413:27883:6563,LH00995:25:23T55JLT4:3:1496:44063:14914,LH00995:25:23T55JLT4:3:2136:5498:13583,LH00995:25:23T55JLT4:3:2165:17010:7600,LH00995:25:23T55JLT4:3:2202:38198:26923,LH00995:25:23T55JLT4:3:2206:44637:10136,LH00995:25:23T55JLT4:3:2214:15780:1406,LH00995:25:23T55JLT4:3:2234:18183:1084,LH00995:25:23T55JLT4:3:2237:11007:26516,LH00995:25:23T55JLT4:3:2278:12973:16750,LH00995:25:23T55JLT4:3:2337:26314:17492,LH00995:25:23T55JLT4:3:2341:24437:10122,LH00995:25:23T55JLT4:3:2397:11201:6143,LH00995:25:23T55JLT4:3:2445:9939:14326,LH00995:25:23T55JLT4:3:2447:15716:6815,LH00995:25:23T55JLT4:3:2455:37947:2275,LH00995:25:23T55JLT4:3:2463:29008:3466,LH00995:25:23T55JLT4:3:2480:11735:17717,LH00995:25:23T55JLT4:3:2481:31289:1504,LH00995:25:23T55JLT4:3:2498:30520:3088,LH00995:25:23T55JLT4:4:1177:41070:19566,LH00995:25:23T55JLT4:4:1189:39832:29389,LH00995:25:23T55JLT4:4:1206:8904:5302,LH00995:25:23T55JLT4:4:1263:9195:20127,LH00995:25:23T55JLT4:4:1276:28304:17044,LH00995:25:23T55JLT4:4:1338:13806:16596,LH00995:25:23T55JLT4:4:1387:25586:25507,LH00995:25:23T55JLT4:4:1410:13758:20883,LH00995:25:23T55JLT4:4:1447:25165:21696,LH00995:25:23T55JLT4:4:2133:22317:2415,LH00995:25:23T55JLT4:4:2144:13054:11005,LH00995:25:23T55JLT4:4:2172:41830:8721,LH00995:25:23T55JLT4:4:2178:16411:3032,LH00995:25:23T55JLT4:4:2183:40868:3214,LH00995:25:23T55JLT4:4:2195:40083:15475,LH00995:25:23T55JLT4:4:2198:8184:22803,LH00995:25:23T55JLT4:4:2215:39824:21612,LH00995:25:23T55JLT4:4:2295:42049:6829,LH00995:25:23T55JLT4:4:2313:6695:15293,LH00995:25:23T55JLT4:4:2319:5708:19300,LH00995:25:23T55JLT4:4:2322:46506:6507,LH00995:25:23T55JLT4:4:2348:18021:29445,LH00995:25:23T55JLT4:5:1129:27438:8987,LH00995:25:23T55JLT4:5:1154:44977:20421,LH00995:25:23T55JLT4:5:1168:22261:1364,LH00995:25:23T55JLT4:5:1187:2011:11271,LH00995:25:23T55JLT4:5:1217:33409:4979,LH00995:25:23T55JLT4:5:1283:13976:28268,LH00995:25:23T55JLT4:5:1287:33902:14774,LH00995:25:23T55JLT4:5:1303:51732:24611,LH00995:25:23T55JLT4:5:1332:2893:11285,LH00995:25:23T55JLT4:5:1392:29355:3228,LH00995:25:23T55JLT4:5:1411:13402:11523,LH00995:25:23T55JLT4:5:2173:11857:3130,LH00995:25:23T55JLT4:5:2174:31871:15489,LH00995:25:23T55JLT4:5:2175:19987:22145,LH00995:25:23T55JLT4:5:2183:34800:10893,LH00995:25:23T55JLT4:5:2247:28724:9702,LH00995:25:23T55JLT4:5:2251:15093:1813,LH00995:25:23T55JLT4:5:2307:31378:25592,LH00995:25:23T55JLT4:5:2440:16339:23616,LH00995:25:23T55JLT4:5:2467:13451:5666,LH00995:25:23T55JLT4:5:2481:5943:3816,LH00995:25:23T55JLT4:5:2495:48391:8342,LH00995:25:23T55JLT4:6:1124:18733:26418,LH00995:25:23T55JLT4:6:1403:16072:15335,LH00995:25:23T55JLT4:6:1403:42526:24162,LH00995:25:23T55JLT4:6:2124:16606:25564,LH00995:25:23T55JLT4:6:2125:3476:15293,LH00995:25:23T55JLT4:6:2201:13370:4909,LH00995:25:23T55JLT4:6:2205:10037:8497,LH00995:25:23T55JLT4:6:2297:48901:15839,LH00995:25:23T55JLT4:6:2320:47914:14998,LH00995:25:23T55JLT4:6:2326:29930:16329,LH00995:25:23T55JLT4:6:2351:19785:27455,LH00995:25:23T55JLT4:6:2445:28474:16105,LH00995:25:23T55JLT4:8:1128:3573:29361,LH00995:25:23T55JLT4:8:1215:8815:13695,LH00995:25:23T55JLT4:8:1236:18458:10024,LH00995:25:23T55JLT4:8:1238:41830:26488,LH00995:25:23T55JLT4:8:1240:17609:24190,LH00995:25:23T55JLT4:8:1260:14373:2724,LH00995:25:23T55JLT4:8:1260:33983:15587,LH00995:25:23T55JLT4:8:1354:29978:27651,LH00995:25:23T55JLT4:8:1371:18984:20211,LH00995:25:23T55JLT4:8:1439:40932:5736,LH00995:25:23T55JLT4:8:1467:42647:25269,LH00995:25:23T55JLT4:8:2120:22293:27259,LH00995:25:23T55JLT4:8:2132:44217:28072,LH00995:25:23T55JLT4:8:2191:2036:20449,LH00995:25:23T55JLT4:8:2222:33360:26502,LH00995:25:23T55JLT4:8:2243:26540:7824,LH00995:25:23T55JLT4:8:2402:21832:2667,LH00995:25:23T55JLT4:8:2461:11986:3438,LH00995:25:23T55JLT4:8:2467:42995:20463,LH00995:25:23T55JLT4:8:2468:44726:20491	YES_LDAS	GT	1.5301	chr17:39700311:+	ERBB2^ENSG00000141736.14	.	.	.	AG	1.8892	chr17:41771862:-	JUP^ENSG00000173801.17	0	.	ONLY_REF_SPLICE		"[""DEEPEST2019"",""ChimerSeq"",""INTRACHROMOSOMAL[chr17:2.02Mb]""]"		False	chr17:39700311-chr17:41771862	213.0	0.0		213	1173_9C	STAR-Fusion
fp_audit	1173_9C	fusion	ERBB2--KRT42P	ERBB2--KRT42P	ERBB2--KRT42P	FP	FP		Arriba		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	KRT42P	39700311	41635402	chr17:39700311-chr17:41635402	+,-	Arriba	1	0	11		11	PASS	out-of-frame	ERBB2--KRT42P	ERBB2--KRT42P	confidence:medium;duplicates(13)	medium	inversion	CDS/splice-site	exon/splice-site	65535	15	13.0	0.0	0.0	0.0									5	6	False	duplicates(13)		FAIL		False	chr17:39700311	chr17:41635402	chr17:39700311-chr17:41635402	.	.	medium	65535	15	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(13)	CCAGCCGGGTCCAGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|GGGCCGTTCCTCGGGGCATGACGCTGGCTCCTGCACAGATCCTGCTCCTCTGTGGCCTTCCTGGGCTGCCCTCCCCTCCTCCGGGACTGCTCTGGACTGACATTGCTCAG___GCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACC	ERBB2	KRT42P	ENSG00000141736	ENSG00000214514	MELAALCRWGLLLALLPPGAASTQ|gavprgmtlapaqilllcglpglpspppgllwtdiaqagvqwcdlgslq	LH00995:25:23T55JLT4:1:1117:41256:3186,LH00995:25:23T55JLT4:1:2483:37300:22733,LH00995:25:23T55JLT4:2:2151:2942:10921,LH00995:25:23T55JLT4:2:2249:15060:11005,LH00995:25:23T55JLT4:3:2334:6356:2569,LH00995:25:23T55JLT4:3:2363:8241:1406,LH00995:25:23T55JLT4:4:1358:4802:22999,LH00995:25:23T55JLT4:5:1232:21751:15531,LH00995:25:23T55JLT4:6:1413:12755:27497,LH00995:25:23T55JLT4:3:2118:44395:26923,LH00995:25:23T55JLT4:3:2214:10287:18880,LH00995:25:23T55JLT4:3:2258:7245:24765,LH00995:25:23T55JLT4:3:2258:7262:24765,LH00995:25:23T55JLT4:3:2422:40584:22649,LH00995:25:23T55JLT4:4:1474:15287:22663,LH00995:25:23T55JLT4:4:2120:10724:23896,LH00995:25:23T55JLT4:4:2272:10902:29109,LH00995:25:23T55JLT4:5:2266:11080:19692,LH00995:25:23T55JLT4:6:1274:18936:27693,LH00995:25:23T55JLT4:6:1415:23482:28366,LH00995:25:23T55JLT4:6:1415:23490:28352,LH00995:25:23T55JLT4:6:1478:39031:12420,LH00995:25:23T55JLT4:6:2166:2472:15012,LH00995:25:23T55JLT4:8:2477:38368:3368	out-of-frame	.	CDS/splice-site	exon/splice-site	5	6	+/+	-/-	.	11	ENST00000269571	ENST00000398469	inversion	7.628928898382667e-05	0.2857142857142857	0.14289528750163477																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--KRT42P	ERBB2--KRT42P	ERBB2--KRT42P	FP	FP		Arriba		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	KRT42P	39716605	41630630	chr17:39716605-chr17:41630630	+,-	Arriba	1	0	1		1	PASS	out-of-frame	ERBB2--KRT42P	ERBB2--KRT42P	confidence:low;duplicates(5)	low	inversion	CDS/splice-site	exon/splice-site	65535	6	5.0	0.0	0.0	0.0									0	1	False	duplicates(5)		FAIL		False	chr17:39716605	chr17:41630630	chr17:39716605-chr17:41630630	.	.	low	65535	6	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(5)	GCCAGGCACTGTTTGCCGTGCCACCCTGAGTGTCAGCCCCAGAATGGCTCAGTGACCTGTTTTGGACCG|ATCCTGGTGGCTGTGGTCGGTAATTCCAGCTTCGTGCTGGtTACAGGTGGATGATGCCCACCTGGCTGCCGATGACCTCTGCACCAAGTGAGGCTGGGTCTCTGGAGCTGCCCCAGGGGCTGGACAAGCTGACCCTGGCCGGGGCCAACCTGGAGATGCAGATTGAGAACCTCAAGGAGGACCTGGTCTACCTGAAGAAGAAC	ERBB2	KRT42P	ENSG00000141736	ENSG00000214514	ARHCLPCHPECQPQNGSVTCFGP|ilvavvgnssfvlvtgg*	LH00995:25:23T55JLT4:2:1149:19631:1434,LH00995:25:23T55JLT4:3:1315:26208:8286,LH00995:25:23T55JLT4:4:1248:51296:10010,LH00995:25:23T55JLT4:5:2357:26467:28716,LH00995:25:23T55JLT4:6:1319:5166:23097,LH00995:25:23T55JLT4:8:2147:48149:7474	out-of-frame	Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(52%),Receptor_L_domain(100%)|	CDS/splice-site	exon/splice-site	0	1	+/+	-/-	.	1	ENST00000584601	ENST00000398469	inversion	0.0	0.14285714285714285	0.07142857142857142																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--KRT42P	ERBB2--KRT42P	ERBB2--KRT42P	FP	FP		Arriba		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	KRT42P	39700311	41648914	chr17:39700311-chr17:41648914	+,-	Arriba	1	0	11		11	PASS	out-of-frame	ERBB2--KRT42P	ERBB2--KRT42P	confidence:medium;duplicates(9)	medium	inversion	CDS/splice-site	intergenic	65535	1	9.0	0.0	0.0	0.0									10	1	False	duplicates(9)		FAIL		False	chr17:39700311	chr17:41648914	chr17:39700311-chr17:41648914	.	.	medium	65535	1	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(9)	AGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|ATTTGAAGTCCTTCCCCCAGGCCCTGGACGGGGAAACTCAGGACTCCTCTCCGGGTAGAGTCTGGCAGCAGTCGGGCCAGAACAGCTCAGTGCTGCCCTCTGGGGGCGAGGCCGCGGCTT	ERBB2	KRT42P(8715),AC130686.1(16652)	ENSG00000141736	.	MELAALCRWGLLLALLPPGAASTQ|dlksfpqaldgetqdsspgrvwqqsgqnssvlpsggeaaa	LH00995:25:23T55JLT4:1:1407:7156:23434,LH00995:25:23T55JLT4:1:1455:19114:26404,LH00995:25:23T55JLT4:1:2197:22010:6815,LH00995:25:23T55JLT4:1:2239:39460:25185,LH00995:25:23T55JLT4:1:2322:45293:23462,LH00995:25:23T55JLT4:2:1266:15570:27273,LH00995:25:23T55JLT4:2:2460:51166:7292,LH00995:25:23T55JLT4:3:1205:2173:25311,LH00995:25:23T55JLT4:3:1272:45438:26068,LH00995:25:23T55JLT4:3:1366:49224:12056,LH00995:25:23T55JLT4:3:2301:8977:16946,LH00995:25:23T55JLT4:4:2181:35884:28828,LH00995:25:23T55JLT4:4:2365:15789:20421,LH00995:25:23T55JLT4:5:1209:24477:5568,LH00995:25:23T55JLT4:5:1213:13305:15166,LH00995:25:23T55JLT4:5:2243:4584:6086,LH00995:25:23T55JLT4:8:1370:17536:17703,LH00995:25:23T55JLT4:8:2119:38578:22761,LH00995:25:23T55JLT4:8:2464:17973:14704,LH00995:25:23T55JLT4:6:1414:39711:22369	out-of-frame	.	CDS/splice-site	intergenic	10	1	+/+	./-	.	11	ENST00000269571	.	inversion	0.0001525669387443741	0.5	0.25007628346937216																																						1173_9C	Arriba
fp_audit	1173_9C	fusion	ERBB2--USP7	ERBB2--USP7	ERBB2--USP7	FP	FP		Arriba		dev_rna_exp0016	1173_9C	altera_exact	1173	clinical	patient	ovary	Ovarian				51	unknown			False	1173_9C_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		51.10	38.00	36.79			AIH_Ext13_RNA	H05		False		dev_rna_exp0016_lib_s56	200.00		80.97	dev_rna_exp0016	H07		False		1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_9C_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr16	ERBB2	USP7	39700311	9042615	chr17:39700311-chr16:9042615	+,+	Arriba	1	0	12		12	PASS	out-of-frame	ERBB2--USP7	ERBB2--USP7	confidence:medium;duplicates(15)	medium	translocation	CDS/splice-site	intergenic	65535	7	15.0	0.0	0.0	0.0									11	1	False	duplicates(15)		FAIL		False	chr17:39700311	chr16:9042615	chr17:39700311-chr16:9042615	.	.	medium	65535	7	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(15)	CCGGGTCCAGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|ATGCTTGGCCTTGAAACCCAGCCGCCATGCTGTGAGGAAGCCCAAGCCAGC	ERBB2	USP7(67287),AC087190.2(25939)	ENSG00000141736	.	MELAALCRWGLLLALLPPGAASTQ|dawp*	LH00995:25:23T55JLT4:4:1463:4406:17941,LH00995:25:23T55JLT4:8:1348:47526:6479,LH00995:25:23T55JLT4:1:1386:17932:1575,LH00995:25:23T55JLT4:1:1441:24162:28450,LH00995:25:23T55JLT4:1:2152:51732:5470,LH00995:25:23T55JLT4:1:2184:50114:7488,LH00995:25:23T55JLT4:1:2359:27001:20561,LH00995:25:23T55JLT4:2:1105:28708:16063,LH00995:25:23T55JLT4:2:1105:44379:17058,LH00995:25:23T55JLT4:2:1485:17851:23378,LH00995:25:23T55JLT4:2:2362:43845:22859,LH00995:25:23T55JLT4:3:1482:34040:9688,LH00995:25:23T55JLT4:3:2302:41814:10178,LH00995:25:23T55JLT4:4:1216:25132:20099,LH00995:25:23T55JLT4:4:1351:38036:17310,LH00995:25:23T55JLT4:5:1153:41102:7572,LH00995:25:23T55JLT4:5:1326:44152:1448,LH00995:25:23T55JLT4:5:1429:18976:12714,LH00995:25:23T55JLT4:5:1429:32648:7390,LH00995:25:23T55JLT4:5:1464:12172:2359,LH00995:25:23T55JLT4:5:2175:29970:21360,LH00995:25:23T55JLT4:5:2306:27373:26671,LH00995:25:23T55JLT4:6:1482:7626:20043,LH00995:25:23T55JLT4:6:2366:43149:10108,LH00995:25:23T55JLT4:8:1136:14745:22257,LH00995:25:23T55JLT4:8:2327:13863:9660,LH00995:25:23T55JLT4:8:2349:13645:3228	out-of-frame	.	CDS/splice-site	intergenic	11	1	+/+	./+	.	12	ENST00000269571	.	translocation	0.0001678210722240869	0.125	0.06258391053611205																																						1173_9C	Arriba
fp_audit	1173_BEE	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_BEE	altera_exact	1173	clinical	patient	head and neck	Head And Neck				60	unknown			False	1173_BEE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		63.60	38.00	36.99			AIH_Ext13_RNA	F05		False		dev_rna_exp0016_lib_s54	200.00		68.70	dev_rna_exp0016	F07		False		1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	5'UTR/splice-site	1156	384	3.0	0.0	0.0	0.0									0	1	False	duplicates(3)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	1156	384	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	AGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	TMKQr|lshh*	LH00995:25:23T55JLT4:2:2431:12269:7824,LH00995:25:23T55JLT4:5:1147:9632:1042,LH00995:25:23T55JLT4:8:1116:15295:24078,LH00995:25:23T55JLT4:8:2324:20829:3732	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.0025974025974025974	0.0012987012987012987																																						1173_BEE	Arriba
fp_audit	1173_BEE	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_BEE	altera_exact	1173	clinical	patient	head and neck	Head And Neck				60	unknown			False	1173_BEE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		63.60	38.00	36.99			AIH_Ext13_RNA	F05		False		dev_rna_exp0016_lib_s54	200.00		68.70	dev_rna_exp0016	F07		False		1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243613671	243316755	chr1:243613671-chr1:243316755	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	3084	913	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243613671	chr1:243316755	chr1:243613671-chr1:243316755	.	.	low	3084	913	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	TTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG|AGAAAGAGATGACTTGATGTCTGC	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	LKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE|rkr*	LH00995:25:23T55JLT4:2:2256:35471:6451,LH00995:25:23T55JLT4:7:1130:33368:21976	out-of-frame	PH_domain(100%),Protein_kinase_domain(32%)|Centrosomal_colon_cancer_autoantigen_protein_family(56%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00032414910858995135	0.0	0.00016207455429497568																																						1173_BEE	Arriba
fp_audit	1173_BEE	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_BEE	altera_exact	1173	clinical	patient	head and neck	Head And Neck				60	unknown			False	1173_BEE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		63.60	38.00	36.99			AIH_Ext13_RNA	F05		False		dev_rna_exp0016_lib_s54	200.00		68.70	dev_rna_exp0016	F07		False		1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243573048	chr1:243426558-chr1:243573048	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	1156	2861													1	0	False			FAIL		False	chr1:243426558	chr1:243573048	chr1:243426558-chr1:243573048	.	.	low	1156	2861	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EQCVQHGRVHETMKQs|cfsicresgcslr	LH00995:25:23T55JLT4:7:1478:32405:11958	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.000864304235090752	0.0	0.000432152117545376																																						1173_BEE	Arriba
fp_audit	1173_CH0	fusion	ABL1--PRR16	PRR16--ABL1	ABL1--PRR16	FP	FP		Arriba		dev_rna_exp0016	1173_CH0	altera_exact	1173	clinical	patient	head and neck	Head And Neck				42	unknown			False	1173_CH0_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		19.20	38.00	30.8			AIH_Ext13_RNA	B03		False		dev_rna_exp0016_lib_s93	100.00		39.78	dev_rna_exp0016	E12		False		1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr5	chr9	PRR16	ABL1	120686847	130883969	chr5:120686847-chr9:130883969	+,+	Arriba	1	0	3		3	PASS		PRR16--ABL1	ABL1--PRR16	confidence:medium;duplicates(6)	medium	translocation	3'UTR	CDS/splice-site	0	5380	6.0	0.0	0.0	0.0									0	3		duplicates(6)		FAIL		False	chr5:120686847	chr9:130883969	chr5:120686847-chr9:130883969	.	.	medium	0	5380	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(6)	TTCTACTCAAGCAATAAAAAGCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTG|ATCCTCTGGACCATGAGCCTGCCGTGTCTCCATTGCTCCCTCGAAAAGAGCGAGGTCCCCCGGAGGGCGGCCTGAATGAAGATGAGCGCCTTCTCCCCAAAGACAAAAAGACCAACTTGTTCAGCGCCTTGATCAAGAAGAAGAAGAAGACAGC	PRR16	ABL1	ENSG00000184838	ENSG00000097007	.	LH00995:25:23T55JLT4:1:1155:40552:17689,LH00995:25:23T55JLT4:1:2179:47348:20547,LH00995:25:23T55JLT4:1:2356:23547:22761,LH00995:25:23T55JLT4:3:1477:5474:10458,LH00995:25:23T55JLT4:3:1477:5482:10472,LH00995:25:23T55JLT4:4:1124:32737:28170,LH00995:25:23T55JLT4:4:1251:4204:11817,LH00995:25:23T55JLT4:7:2324:8354:24443,LH00995:25:23T55JLT4:8:1345:28700:26586	.	Domain_of_unknown_function_(DUF4589)(100%)|F-actin_binding(100%)	3'UTR	CDS/splice-site	0	3	+/+	+/+	.	3	ENST00000407149	ENST00000372348	translocation		0.0005573100501579045																																							1173_CH0	Arriba
fp_audit	1173_CH0	fusion	ABL1--PRR16	PRR16--ABL1	ABL1--PRR16	FP	FP		Arriba		dev_rna_exp0016	1173_CH0	altera_exact	1173	clinical	patient	head and neck	Head And Neck				42	unknown			False	1173_CH0_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		19.20	38.00	30.8			AIH_Ext13_RNA	B03		False		dev_rna_exp0016_lib_s93	100.00		39.78	dev_rna_exp0016	E12		False		1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr5	chr9	PRR16	ABL1	120686847	130883969	chr5:120686847-chr9:130883969	+,+	Arriba	1	0	3		3	PASS		PRR16--ABL1	ABL1--PRR16	confidence:medium;duplicates(6)	medium	translocation	3'UTR	CDS/splice-site	0	5380	6.0	0.0	0.0	0.0									0	3		duplicates(6)		FAIL		False	chr5:120686847	chr9:130883969	chr5:120686847-chr9:130883969	.	.	medium	0	5380	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(6)	TTCTACTCAAGCAATAAAAAGCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTG|ATCCTCTGGACCATGAGCCTGCCGTGTCTCCATTGCTCCCTCGAAAAGAGCGAGGTCCCCCGGAGGGCGGCCTGAATGAAGATGAGCGCCTTCTCCCCAAAGACAAAAAGACCAACTTGTTCAGCGCCTTGATCAAGAAGAAGAAGAAGACAGC	PRR16	ABL1	ENSG00000184838	ENSG00000097007	.	LH00995:25:23T55JLT4:1:1155:40552:17689,LH00995:25:23T55JLT4:1:2179:47348:20547,LH00995:25:23T55JLT4:1:2356:23547:22761,LH00995:25:23T55JLT4:3:1477:5474:10458,LH00995:25:23T55JLT4:3:1477:5482:10472,LH00995:25:23T55JLT4:4:1124:32737:28170,LH00995:25:23T55JLT4:4:1251:4204:11817,LH00995:25:23T55JLT4:7:2324:8354:24443,LH00995:25:23T55JLT4:8:1345:28700:26586	.	Domain_of_unknown_function_(DUF4589)(100%)|F-actin_binding(100%)	3'UTR	CDS/splice-site	0	3	+/+	+/+	.	3	ENST00000407149	ENST00000372348	translocation		0.0005573100501579045																																							1173_CH0	Arriba
fp_audit	1173_CI9	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CI9	altera_exact	1173	clinical	patient	skin	Skin				58	unknown			False	1173_CI9_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		48.10	38.00	33.84			AIH_Ext13_RNA	E04		False		dev_rna_exp0016_lib_s45	200.00		65.97	dev_rna_exp0016	E06		False		1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243664883	chr1:243256240-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	488	10864	1.0	0.0	0.0	0.0									1	0	True	duplicates(1)		FAIL		False	chr1:243256240	chr1:243664883	chr1:243256240-chr1:243664883	.	.	low	488	10864	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GCCGCGGCAGGAAGCAGGCGGGCGCTCCCCGGCCACAGGCCTGTTGTTCTCGGAAGGGAGAAAGCTGGACATTTCCCCACGTAACTCCCAGCTCTGGGCCTAGAGTGCGTGCATGGtGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|AATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGAT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MvKSPENSTLEEILGQYQRSLR|eCQLMKTERPKPNTFIIRCLQWTTVIERTFHV	LH00995:25:23T55JLT4:1:2192:49589:26951,LH00995:25:23T55JLT4:7:1413:51077:6773	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.002044989775051125	0.0	0.0010224948875255625																																						1173_CI9	Arriba
fp_audit	1173_CI9	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CI9	altera_exact	1173	clinical	patient	skin	Skin				58	unknown			False	1173_CI9_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		48.10	38.00	33.84			AIH_Ext13_RNA	E04		False		dev_rna_exp0016_lib_s45	200.00		65.97	dev_rna_exp0016	E06		False		1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243695591	243341039	chr1:243695591-chr1:243341039	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	7582	242	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243695591	chr1:243341039	chr1:243695591-chr1:243341039	.	.	low	7582	242	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	CTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|ATGTTGATCTTGTCTCAGAATATTG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	LLKTDGSFIGYKEKPQDVDLPYPLNNFSVA|nvdlvsey	LH00995:25:23T55JLT4:1:1341:31904:27063,LH00995:25:23T55JLT4:3:2104:24744:12616	out-of-frame	PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(42%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00013187392852433074	0.0	6.593696426216537e-05																																						1173_CI9	Arriba
fp_audit	1173_CI9	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CI9	altera_exact	1173	clinical	patient	skin	Skin				58	unknown			False	1173_CI9_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		48.10	38.00	33.84			AIH_Ext13_RNA	E04		False		dev_rna_exp0016_lib_s45	200.00		65.97	dev_rna_exp0016	E06		False		1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243344331	243695716	chr1:243344331-chr1:243695716	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	CDS/splice-site	180	5642	3.0	0.0	0.0	0.0									0	1	False	duplicates(3)		FAIL		False	chr1:243344331	chr1:243695716	chr1:243344331-chr1:243695716	.	.	low	180	5642	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	GGGATCTTGAAATTAAAGATCAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	DLEIKDQ|eni*	LH00995:25:23T55JLT4:3:2175:51247:9057,LH00995:25:23T55JLT4:4:1324:32130:23364,LH00995:25:23T55JLT4:8:1427:46013:21234,LH00995:25:23T55JLT4:8:1427:50826:17184	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(69%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.000177210703526493	8.86053517632465e-05																																						1173_CI9	Arriba
fp_audit	1173_CI9	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CI9	altera_exact	1173	clinical	patient	skin	Skin				58	unknown			False	1173_CI9_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		48.10	38.00	33.84			AIH_Ext13_RNA	E04		False		dev_rna_exp0016_lib_s45	200.00		65.97	dev_rna_exp0016	E06		False		1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243552943	chr1:243426558-chr1:243552943	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	347	5841													0	1	False			FAIL		False	chr1:243426558	chr1:243552943	chr1:243426558-chr1:243552943	.	.	low	347	5841	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	AGACGATGAAGCAAAG|GTGTTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGGGTTGTCATGTATGAAATGATGTGTGGGAGGTTACCTTTCTACAACC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	TMKQr|c*	LH00995:25:23T55JLT4:6:2230:7788:20883	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(34%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.00017117425539198904	8.558712769599452e-05																																						1173_CI9	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	2		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	5'UTR/splice-site	1800	530	3.0	0.0	0.0	0.0									0	2	False	duplicates(3)		FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	low	1800	530	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(3)	ACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	STLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:2:1190:2901:6927,LH00995:25:23T55JLT4:2:1462:42000:16161,LH00995:25:23T55JLT4:2:1462:42008:16175,LH00995:25:23T55JLT4:5:1398:21185:5470,LH00995:25:23T55JLT4:5:2339:42235:23013	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	2	+/+	-/-	.	2	ENST00000366541	ENST00000673466	inversion	0.0	0.0037593984962406013	0.0018796992481203006																																						1173_CRL	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	1600	530													1	0	False			FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	1600	530	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	GKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:5:2259:19413:4111	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0006246096189881324	0.0	0.0003123048094940662																																						1173_CRL	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243637742	chr1:243256240-chr1:243637742	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	CDS/splice-site	1800	1569	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr1:243256240	chr1:243637742	chr1:243256240-chr1:243637742	.	.	low	1800	1569	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	GGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|ACAATGAATGATTTTGACTATTTGAAACTACTAGGTAAAGGCACTTTTGGGAAAGTTATTTTGGTTCGAGAGAAGGCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAGG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AKSPENSTLEEILGQYQRSLR|dne*	LH00995:25:23T55JLT4:1:1145:17067:24597,LH00995:25:23T55JLT4:1:1145:17075:24611,LH00995:25:23T55JLT4:3:2119:6525:3144	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.0006369426751592356	0.0003184713375796178																																						1173_CRL	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243695716	chr1:243426558-chr1:243695716	+,-	Arriba	1	0	0		0	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;mismappers(1)	low	inversion	CDS/splice-site	CDS/splice-site	1600	2938	0.0	0.0	1.0	0.0									0	0	False	mismappers(1)		FAIL		False	chr1:243426558	chr1:243695716	chr1:243426558-chr1:243695716	.	.	low	1600	2938	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(0.0<8.0)	mismappers(1)	CAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GAGAATATATAAAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	QLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|riykk	LH00995:25:23T55JLT4:8:1444:42696:16890	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	0	+/+	-/-	.	0	ENST00000366541	ENST00000336199	inversion	0.0	0.0	0.0																																						1173_CRL	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	2		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	5'UTR/splice-site	1800	530	3.0	0.0	0.0	0.0									0	2	False	duplicates(3)		FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	low	1800	530	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(3)	ACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	STLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:2:1190:2901:6927,LH00995:25:23T55JLT4:2:1462:42000:16161,LH00995:25:23T55JLT4:2:1462:42008:16175,LH00995:25:23T55JLT4:5:1398:21185:5470,LH00995:25:23T55JLT4:5:2339:42235:23013	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	2	+/+	-/-	.	2	ENST00000366541	ENST00000673466	inversion	0.0	0.0037593984962406013	0.0018796992481203006																																						1173_CRL	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	1600	530													1	0	False			FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	1600	530	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	GKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:5:2259:19413:4111	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0006246096189881324	0.0	0.0003123048094940662																																						1173_CRL	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243637742	chr1:243256240-chr1:243637742	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	CDS/splice-site	1800	1569	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr1:243256240	chr1:243637742	chr1:243256240-chr1:243637742	.	.	low	1800	1569	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	GGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|ACAATGAATGATTTTGACTATTTGAAACTACTAGGTAAAGGCACTTTTGGGAAAGTTATTTTGGTTCGAGAGAAGGCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAGG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AKSPENSTLEEILGQYQRSLR|dne*	LH00995:25:23T55JLT4:1:1145:17067:24597,LH00995:25:23T55JLT4:1:1145:17075:24611,LH00995:25:23T55JLT4:3:2119:6525:3144	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.0006369426751592356	0.0003184713375796178																																						1173_CRL	Arriba
fp_audit	1173_CRL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_CRL	altera_exact	1173	clinical	patient	ovary	Ovarian				45	unknown			False	1173_CRL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.50	35.00	55.24			AIH_Ext12_RNA	C01		False		dev_rna_exp0016_lib_s03	200.00		89.12	dev_rna_exp0016	C01		False		1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243695716	chr1:243426558-chr1:243695716	+,-	Arriba	1	0	0		0	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;mismappers(1)	low	inversion	CDS/splice-site	CDS/splice-site	1600	2938	0.0	0.0	1.0	0.0									0	0	False	mismappers(1)		FAIL		False	chr1:243426558	chr1:243695716	chr1:243426558-chr1:243695716	.	.	low	1600	2938	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(0.0<8.0)	mismappers(1)	CAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GAGAATATATAAAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	QLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|riykk	LH00995:25:23T55JLT4:8:1444:42696:16890	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	0	+/+	-/-	.	0	ENST00000366541	ENST00000336199	inversion	0.0	0.0	0.0																																						1173_CRL	Arriba
fp_audit	1173_CRX	fusion	EPCAM--MSH2	EPCAM--MSH2	EPCAM--MSH2	FP	FP		Arriba		dev_rna_exp0016	1173_CRX	altera_exact	1173	clinical	patient	crc	Colorectal				69	unknown			False	1173_CRX_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	43.7			AIH_Ext13_RNA	B02		False		dev_rna_exp0016_lib_s85	100.00		54.48	dev_rna_exp0016	E11		False		1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr2	chr2	EPCAM	MSH2	47375299	47463031	chr2:47375299-chr2:47463031	+,+	Arriba	1	0	7		7	PASS	out-of-frame	EPCAM--MSH2	EPCAM--MSH2	confidence:low;duplicates(1)	low	deletion/read-through	CDS/splice-site	CDS/splice-site	11520	308	1.0	0.0	0.0	0.0									4	3	False	duplicates(1)		FAIL		False	chr2:47375299	chr2:47463031	chr2:47375299-chr2:47463031	.	.	low	11520	308	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(7.0<8.0)	duplicates(1)	AGGACACTGAAATAACCTGCTCTGAGCGAGTGAGAACCTA___CTGGATCATCATTGAACTAAAACACAAAGCAAGAGAAAAACCTTATGATAGTAAAAGTTTGCGGAC|GTGGAAAACCATGAATTCCTTGTAAAACCTTCATTTGATCCTAATCTCAGTGAATTAAGAGAAATAATGAATGACTTGGAAAAGAAGATGCAGTCAACATTAATAAGTGCAGCCAGAGATCTTG___GC	EPCAM	MSH2	ENSG00000119888	ENSG00000095002	DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRt|wktmnsl*	LH00995:25:23T55JLT4:3:1392:6776:8342,LH00995:25:23T55JLT4:5:1260:48424:22046,LH00995:25:23T55JLT4:5:1350:3443:1785,LH00995:25:23T55JLT4:6:2470:11525:27974,LH00995:25:23T55JLT4:4:1250:9462:13863,LH00995:25:23T55JLT4:5:1386:37486:8679,LH00995:25:23T55JLT4:8:1337:45859:6002,LH00995:25:23T55JLT4:8:2270:49839:6927	out-of-frame	Epithelial_cell_adhesion_molecule_N-terminal_domain(100%),Thyroglobulin_type-1_repeat(100%)|MutS_domain_III(58%),MutS_domain_V(100%),MutS_family_domain_IV(100%)	CDS/splice-site	CDS/splice-site	4	3	+/+	+/+	.	7	ENST00000456133	ENST00000644092	deletion/read-through	0.0003471017007983339	0.00964630225080386	0.004996701975801096																																						1173_CRX	Arriba
fp_audit	1173_CRX	fusion	EPCAM--MSH2	EPCAM--MSH2	EPCAM--MSH2	FP	FP		Arriba		dev_rna_exp0016	1173_CRX	altera_exact	1173	clinical	patient	crc	Colorectal				69	unknown			False	1173_CRX_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	43.7			AIH_Ext13_RNA	B02		False		dev_rna_exp0016_lib_s85	100.00		54.48	dev_rna_exp0016	E11		False		1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr2	chr2	EPCAM	MSH2	47374048	47463031	chr2:47374048-chr2:47463031	+,+	Arriba	1	0	1		1	PASS	stop-codon	EPCAM--MSH2	EPCAM--MSH2	confidence:low	low	deletion/read-through	CDS/splice-site	CDS/splice-site	15178	308													1	0				FAIL		False	chr2:47374048	chr2:47463031	chr2:47374048-chr2:47463031	.	.	low	15178	308	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCTCtATGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGAACAGACAAGGACACTGAAATAACCTGCTCTGAGCGAGTGAGAACCTA|GTGGAAAACCATGAATTCCTTGTAAAACCTTCATTTGATCCTAATCTCAGTGAATTAAGA	EPCAM	MSH2	ENSG00000119888	ENSG00000095002	.	LH00995:25:23T55JLT4:2:2323:30383:27399	stop-codon	Epithelial_cell_adhesion_molecule_N-terminal_domain(100%),Thyroglobulin_type-1_repeat(100%)|MutS_domain_III(58%),MutS_domain_V(100%),MutS_family_domain_IV(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	+/+	.	1	ENST00000456133	ENST00000644092	deletion/read-through	6.588049278608604e-05	0.0	3.294024639304302e-05																																						1173_CRX	Arriba
fp_audit	1173_CRX	fusion	EPCAM--MSH2	EPCAM--MSH2	EPCAM--MSH2	FP	FP		Arriba		dev_rna_exp0016	1173_CRX	altera_exact	1173	clinical	patient	crc	Colorectal				69	unknown			False	1173_CRX_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	43.7			AIH_Ext13_RNA	B02		False		dev_rna_exp0016_lib_s85	100.00		54.48	dev_rna_exp0016	E11		False		1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr2	chr2	EPCAM	MSH2	47375299	47463031	chr2:47375299-chr2:47463031	+,+	Arriba	1	0	7		7	PASS	out-of-frame	EPCAM--MSH2	EPCAM--MSH2	confidence:low;duplicates(1)	low	deletion/read-through	CDS/splice-site	CDS/splice-site	11520	308	1.0	0.0	0.0	0.0									4	3	False	duplicates(1)		FAIL		False	chr2:47375299	chr2:47463031	chr2:47375299-chr2:47463031	.	.	low	11520	308	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(7.0<8.0)	duplicates(1)	AGGACACTGAAATAACCTGCTCTGAGCGAGTGAGAACCTA___CTGGATCATCATTGAACTAAAACACAAAGCAAGAGAAAAACCTTATGATAGTAAAAGTTTGCGGAC|GTGGAAAACCATGAATTCCTTGTAAAACCTTCATTTGATCCTAATCTCAGTGAATTAAGAGAAATAATGAATGACTTGGAAAAGAAGATGCAGTCAACATTAATAAGTGCAGCCAGAGATCTTG___GC	EPCAM	MSH2	ENSG00000119888	ENSG00000095002	DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRt|wktmnsl*	LH00995:25:23T55JLT4:3:1392:6776:8342,LH00995:25:23T55JLT4:5:1260:48424:22046,LH00995:25:23T55JLT4:5:1350:3443:1785,LH00995:25:23T55JLT4:6:2470:11525:27974,LH00995:25:23T55JLT4:4:1250:9462:13863,LH00995:25:23T55JLT4:5:1386:37486:8679,LH00995:25:23T55JLT4:8:1337:45859:6002,LH00995:25:23T55JLT4:8:2270:49839:6927	out-of-frame	Epithelial_cell_adhesion_molecule_N-terminal_domain(100%),Thyroglobulin_type-1_repeat(100%)|MutS_domain_III(58%),MutS_domain_V(100%),MutS_family_domain_IV(100%)	CDS/splice-site	CDS/splice-site	4	3	+/+	+/+	.	7	ENST00000456133	ENST00000644092	deletion/read-through	0.0003471017007983339	0.00964630225080386	0.004996701975801096																																						1173_CRX	Arriba
fp_audit	1173_CRX	fusion	EPCAM--MSH2	EPCAM--MSH2	EPCAM--MSH2	FP	FP		Arriba		dev_rna_exp0016	1173_CRX	altera_exact	1173	clinical	patient	crc	Colorectal				69	unknown			False	1173_CRX_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	43.7			AIH_Ext13_RNA	B02		False		dev_rna_exp0016_lib_s85	100.00		54.48	dev_rna_exp0016	E11		False		1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr2	chr2	EPCAM	MSH2	47374048	47463031	chr2:47374048-chr2:47463031	+,+	Arriba	1	0	1		1	PASS	stop-codon	EPCAM--MSH2	EPCAM--MSH2	confidence:low	low	deletion/read-through	CDS/splice-site	CDS/splice-site	15178	308													1	0				FAIL		False	chr2:47374048	chr2:47463031	chr2:47374048-chr2:47463031	.	.	low	15178	308	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCTCtATGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGAACAGACAAGGACACTGAAATAACCTGCTCTGAGCGAGTGAGAACCTA|GTGGAAAACCATGAATTCCTTGTAAAACCTTCATTTGATCCTAATCTCAGTGAATTAAGA	EPCAM	MSH2	ENSG00000119888	ENSG00000095002	.	LH00995:25:23T55JLT4:2:2323:30383:27399	stop-codon	Epithelial_cell_adhesion_molecule_N-terminal_domain(100%),Thyroglobulin_type-1_repeat(100%)|MutS_domain_III(58%),MutS_domain_V(100%),MutS_family_domain_IV(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	+/+	.	1	ENST00000456133	ENST00000644092	deletion/read-through	6.588049278608604e-05	0.0	3.294024639304302e-05																																						1173_CRX	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	401	485													0	1	False			FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	low	401	485	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCAT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:8:2320:4293:4769	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.00205761316872428	0.00102880658436214																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243695716	chr1:243286397-chr1:243695716	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	598	3897													0	1	False			FAIL		False	chr1:243286397	chr1:243695716	chr1:243286397-chr1:243695716	.	.	low	598	3897	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CAAGTAGTTGTGCTTGAAAACGAAGGGCTCCAGCAACAGCTAAAATCTCAAAGACAAGAGGAGACACTGAGGGAACAAACACTTCTGGATGCATCC|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	QVVVLENEGLQQQLKSQRQEETLREQTLLDAS|eni*	LH00995:25:23T55JLT4:5:1344:14802:23111	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.0002565418163160595	0.00012827090815802975																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243843125	243489014	chr1:243843125-chr1:243489014	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4696	269													1	0	False			FAIL		False	chr1:243843125	chr1:243489014	chr1:243843125-chr1:243489014	.	.	low	4696	269	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GCTAAGGCAGCTGGATAAGCACAGCCAGGC	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	MSDVTIVKEGWVQKR|g*	LH00995:25:23T55JLT4:8:2434:18418:23322	out-of-frame	PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000673466	ENST00000366541	inversion	0.00021290185224611454	0.0	0.00010645092612305727																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243613671	243378721	chr1:243613671-chr1:243378721	-,+	Arriba	1	0	1		1	PASS	in-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	5286	494													1	0	True			FAIL		False	chr1:243613671	chr1:243378721	chr1:243613671-chr1:243378721	.	.	low	5286	494	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG|GAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAA	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	AHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE|EIEKLRIELDES	LH00995:25:23T55JLT4:2:1310:41992:21136	in-frame	PH_domain(100%),Protein_kinase_domain(32%)|Centrosomal_colon_cancer_autoantigen_protein_family(30%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00018914318138831096	0.0	9.457159069415548e-05																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243563720	243426427	chr1:243563720-chr1:243426427	-,+	Arriba	1	0	0		0	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;mismatches(1)	low	inversion	CDS/splice-site	CDS/splice-site	4107	412	0.0	1.0	0.0	0.0									0	0	False	mismatches(1)		FAIL		False	chr1:243563720	chr1:243426427	chr1:243563720-chr1:243426427	.	.	low	4107	412	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(0.0<8.0)	mismatches(1)	ATTTTGGACTTTGCAAAGAAGGGATCACAGATGCAGCCACCATGAAGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAG|ATCTGAAATAGCTCAACTCAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	FGLCKEGITDAATMKTFCGTPEYLAPE|i*	LH00995:25:23T55JLT4:6:1464:35229:29375	out-of-frame	PH_domain(100%),Protein_kinase_domain(65%)|Centrosomal_colon_cancer_autoantigen_protein_family(12%)	CDS/splice-site	CDS/splice-site	0	0	-/-	+/+	.	0	ENST00000336199	ENST00000366541	inversion	0.0	0.0	0.0																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	AKT3	SDCCAG8	243695591	243270092	chr1:243695591-chr1:243270092	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	exon/splice-site	4746	815													1	0	False			FAIL		False	chr1:243695591	chr1:243270092	chr1:243695591-chr1:243270092	.	.	low	4746	815	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|GTTGTTCTTGCAGAACATGCCAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	KTDGSFIGYKEKPQDVDLPYPLNNFSVA|scscrtc	LH00995:25:23T55JLT4:8:2484:20675:13303	out-of-frame	PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(97%)	CDS/splice-site	exon/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000490065	inversion	0.0002106593638087213	0.0	0.00010532968190436065																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	407	637													0	1	False			FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	407	637	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	TACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	TYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:8:2382:38295:3634	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.001567398119122257	0.0007836990595611285																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243615161	chr1:243256240-chr1:243615161	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	545	4613													0	1	False			FAIL		False	chr1:243256240	chr1:243615161	chr1:243256240-chr1:243615161	.	.	low	545	4613	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG___CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:8:1416:15020:4573	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(85%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.00021673168617251842	0.00010836584308625921																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243563848	chr1:243256240-chr1:243563848	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	545	4973	1.0	0.0	0.0	0.0									0	1	False	duplicates(1)		FAIL		False	chr1:243256240	chr1:243563848	chr1:243256240-chr1:243563848	.	.	low	545	4973	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|TTGGAGAATCTAATGCTGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTTTGCAAAGAAGGGAcCACAGATGCAGC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|vgesnagqrwphknyrfwtlqrrdhrc	LH00995:25:23T55JLT4:5:2397:29008:14872,LH00995:25:23T55JLT4:8:1243:9859:4013	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(51%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.0002010454362685967	0.00010052271813429835																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243573048	chr1:243286397-chr1:243573048	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	575	5060													0	1	True			FAIL		False	chr1:243286397	chr1:243573048	chr1:243286397-chr1:243573048	.	.	low	575	5060	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CACTTCTGGATGCATCC|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCGTGATCTCAAG___TTGGAGAATCTAATGCTGGAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	LLDAS|LFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLML	LH00995:25:23T55JLT4:6:2398:43861:18992	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.00019758940920766647	9.879470460383324e-05																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	AKT3	SDCCAG8	243695591	243270092	chr1:243695591-chr1:243270092	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	exon/splice-site	4746	815													1	0	False			FAIL		False	chr1:243695591	chr1:243270092	chr1:243695591-chr1:243270092	.	.	low	4746	815	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|GTTGTTCTTGCAGAACATGCCAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	KTDGSFIGYKEKPQDVDLPYPLNNFSVA|scscrtc	LH00995:25:23T55JLT4:8:2484:20675:13303	out-of-frame	PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(97%)	CDS/splice-site	exon/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000490065	inversion	0.0002106593638087213	0.0	0.00010532968190436065																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	407	637													0	1	False			FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	407	637	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	TACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	TYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:8:2382:38295:3634	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.001567398119122257	0.0007836990595611285																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243615161	chr1:243256240-chr1:243615161	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	545	4613													0	1	False			FAIL		False	chr1:243256240	chr1:243615161	chr1:243256240-chr1:243615161	.	.	low	545	4613	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG___CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:8:1416:15020:4573	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(85%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.00021673168617251842	0.00010836584308625921																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243563848	chr1:243256240-chr1:243563848	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	545	4973	1.0	0.0	0.0	0.0									0	1	False	duplicates(1)		FAIL		False	chr1:243256240	chr1:243563848	chr1:243256240-chr1:243563848	.	.	low	545	4973	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|TTGGAGAATCTAATGCTGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTTTGCAAAGAAGGGAcCACAGATGCAGC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|vgesnagqrwphknyrfwtlqrrdhrc	LH00995:25:23T55JLT4:5:2397:29008:14872,LH00995:25:23T55JLT4:8:1243:9859:4013	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(51%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.0002010454362685967	0.00010052271813429835																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243573048	chr1:243286397-chr1:243573048	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	575	5060													0	1	True			FAIL		False	chr1:243286397	chr1:243573048	chr1:243286397-chr1:243573048	.	.	low	575	5060	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CACTTCTGGATGCATCC|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCGTGATCTCAAG___TTGGAGAATCTAATGCTGGAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	LLDAS|LFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLML	LH00995:25:23T55JLT4:6:2398:43861:18992	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.00019758940920766647	9.879470460383324e-05																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	401	485													0	1	False			FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	low	401	485	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCAT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:8:2320:4293:4769	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.00205761316872428	0.00102880658436214																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243695716	chr1:243286397-chr1:243695716	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	598	3897													0	1	False			FAIL		False	chr1:243286397	chr1:243695716	chr1:243286397-chr1:243695716	.	.	low	598	3897	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CAAGTAGTTGTGCTTGAAAACGAAGGGCTCCAGCAACAGCTAAAATCTCAAAGACAAGAGGAGACACTGAGGGAACAAACACTTCTGGATGCATCC|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	QVVVLENEGLQQQLKSQRQEETLREQTLLDAS|eni*	LH00995:25:23T55JLT4:5:1344:14802:23111	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.0002565418163160595	0.00012827090815802975																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243843125	243489014	chr1:243843125-chr1:243489014	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4696	269													1	0	False			FAIL		False	chr1:243843125	chr1:243489014	chr1:243843125-chr1:243489014	.	.	low	4696	269	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GCTAAGGCAGCTGGATAAGCACAGCCAGGC	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	MSDVTIVKEGWVQKR|g*	LH00995:25:23T55JLT4:8:2434:18418:23322	out-of-frame	PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000673466	ENST00000366541	inversion	0.00021290185224611454	0.0	0.00010645092612305727																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243613671	243378721	chr1:243613671-chr1:243378721	-,+	Arriba	1	0	1		1	PASS	in-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	5286	494													1	0	True			FAIL		False	chr1:243613671	chr1:243378721	chr1:243613671-chr1:243378721	.	.	low	5286	494	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG|GAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAA	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	AHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE|EIEKLRIELDES	LH00995:25:23T55JLT4:2:1310:41992:21136	in-frame	PH_domain(100%),Protein_kinase_domain(32%)|Centrosomal_colon_cancer_autoantigen_protein_family(30%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00018914318138831096	0.0	9.457159069415548e-05																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243563720	243426427	chr1:243563720-chr1:243426427	-,+	Arriba	1	0	0		0	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;mismatches(1)	low	inversion	CDS/splice-site	CDS/splice-site	4107	412	0.0	1.0	0.0	0.0									0	0	False	mismatches(1)		FAIL		False	chr1:243563720	chr1:243426427	chr1:243563720-chr1:243426427	.	.	low	4107	412	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(0.0<8.0)	mismatches(1)	ATTTTGGACTTTGCAAAGAAGGGATCACAGATGCAGCCACCATGAAGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAG|ATCTGAAATAGCTCAACTCAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	FGLCKEGITDAATMKTFCGTPEYLAPE|i*	LH00995:25:23T55JLT4:6:1464:35229:29375	out-of-frame	PH_domain(100%),Protein_kinase_domain(65%)|Centrosomal_colon_cancer_autoantigen_protein_family(12%)	CDS/splice-site	CDS/splice-site	0	0	-/-	+/+	.	0	ENST00000336199	ENST00000366541	inversion	0.0	0.0	0.0																																						1173_D6K	Arriba
fp_audit	1173_D6K	fusion	ROS1--U6	U6--ROS1	ROS1--U6	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr4	chr6	U6	ROS1	13154421	117418506	chr4:13154421-chr6:117418506	-,-	Arriba	1	0	4		4	PASS		U6--ROS1	ROS1--U6	confidence:medium;duplicates(1)	medium	translocation	intergenic	CDS/splice-site	0	3699	1.0	0.0	0.0	0.0									0	4		duplicates(1)		FAIL		False	chr4:13154421	chr6:117418506	chr4:13154421-chr6:117418506	.	.	medium	0	3699	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(1)	CTTGgTCCTCCTTGCCTTCTGCCATGATTGTGAGGTCTCCCCAGCCACGTGGAACT|GGCCAGCAGCTTGACCTTGGCACACCACATAATCTGAGTGAACCG___TGTATCCAAGGATGTCACTTTTGGAACTCTGTAGATCAGAAAAACTGTGCTTTAAAGTGT___AATGATACTTATGCCACCGTTTGTGAG___CGGGAGTCGTGTGAGGTTGGgTGTAGCAGCGCGGAAGGTGCATATGAAGAGGAAGTACTGG	U6(103010),HSP90AB2P(178993)	ROS1	.	ENSG00000047936	.	LH00995:25:23T55JLT4:6:1156:11509:27862,LH00995:25:23T55JLT4:6:2152:11752:29627,LH00995:25:23T55JLT4:8:1388:43772:22453,LH00995:25:23T55JLT4:8:1471:38950:19370,LH00995:25:23T55JLT4:8:2144:29218:24288	.	|Fibronectin_type_III_domain(100%),Protein_kinase_domain(100%)	intergenic	CDS/splice-site	0	4	./-	-/-	.	4	.	ENST00000368507	translocation		0.001080205238995409																																							1173_D6K	Arriba
fp_audit	1173_D6K	fusion	ROS1--U6	U6--ROS1	ROS1--U6	FP	FP		Arriba		dev_rna_exp0016	1173_D6K	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				74	unknown			False	1173_D6K_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	38.00	70.35			AIH_Ext13_RNA	A01		False		dev_rna_exp0016_lib_s17	200.00		87.71	dev_rna_exp0016	A03		False		1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr4	chr6	U6	ROS1	13154421	117418506	chr4:13154421-chr6:117418506	-,-	Arriba	1	0	4		4	PASS		U6--ROS1	ROS1--U6	confidence:medium;duplicates(1)	medium	translocation	intergenic	CDS/splice-site	0	3699	1.0	0.0	0.0	0.0									0	4		duplicates(1)		FAIL		False	chr4:13154421	chr6:117418506	chr4:13154421-chr6:117418506	.	.	medium	0	3699	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(1)	CTTGgTCCTCCTTGCCTTCTGCCATGATTGTGAGGTCTCCCCAGCCACGTGGAACT|GGCCAGCAGCTTGACCTTGGCACACCACATAATCTGAGTGAACCG___TGTATCCAAGGATGTCACTTTTGGAACTCTGTAGATCAGAAAAACTGTGCTTTAAAGTGT___AATGATACTTATGCCACCGTTTGTGAG___CGGGAGTCGTGTGAGGTTGGgTGTAGCAGCGCGGAAGGTGCATATGAAGAGGAAGTACTGG	U6(103010),HSP90AB2P(178993)	ROS1	.	ENSG00000047936	.	LH00995:25:23T55JLT4:6:1156:11509:27862,LH00995:25:23T55JLT4:6:2152:11752:29627,LH00995:25:23T55JLT4:8:1388:43772:22453,LH00995:25:23T55JLT4:8:1471:38950:19370,LH00995:25:23T55JLT4:8:2144:29218:24288	.	|Fibronectin_type_III_domain(100%),Protein_kinase_domain(100%)	intergenic	CDS/splice-site	0	4	./-	-/-	.	4	.	ENST00000368507	translocation		0.001080205238995409																																							1173_D6K	Arriba
fp_audit	1173_FM	fusion	PDGFRB--ZNF701	PDGFRB--ZNF701	PDGFRB--ZNF701	FP	FP		Arriba		dev_rna_exp0016	1173_FM	altera_exact	1173	clinical	patient	crc	Colorectal				77	unknown			False	1173_FM_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		130.00	38.00	52.77			AIH_Ext13_RNA	C02		False		dev_rna_exp0016_lib_s27	200.00		37.21	dev_rna_exp0016	C04		False		1173_FM_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FM_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr5	chr19	PDGFRB	ZNF701	150119522	52561499	chr5:150119522-chr19:52561499	-,+	Arriba	1	0	4		4	PASS	out-of-frame	PDGFRB--ZNF701	PDGFRB--ZNF701	confidence:low;duplicates(7)	low	translocation	CDS	intron	15680	2	7.0	0.0	0.0	0.0									4	0	False	duplicates(7)		FAIL		False	chr5:150119522	chr19:52561499	chr5:150119522-chr19:52561499	.	.	low	15680	2	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(4.0<8.0)	duplicates(7)	TTCAACAGCCTCTACACCACCCTGAGCGACGTGTGGTCCTTCGGGATCCTGCTCTGGGAGATCTTCACCTTGG___GTGGCACCCCTTACCCAGAGCTGCCCATGAACGAGCAGTTCTACA|CACACTGGCCTGCTGTACTTATTTGAGAAATAATGTTAATTTGCCTCCAGATTTTTTTTTTTTTTTGAGACGGA	PDGFRB	ZNF701	ENSG00000113721	ENSG00000167562	FNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY|thwpavli*	LH00995:25:23T55JLT4:1:2113:44476:12490,LH00995:25:23T55JLT4:2:2433:20020:14914,LH00995:25:23T55JLT4:3:1136:46975:23294,LH00995:25:23T55JLT4:4:1308:20610:2653,LH00995:25:23T55JLT4:4:1308:20618:2667,LH00995:25:23T55JLT4:5:2141:24081:4321,LH00995:25:23T55JLT4:5:2273:37243:18684,LH00995:25:23T55JLT4:5:2490:47938:19945,LH00995:25:23T55JLT4:8:1427:6833:11299,LH00995:25:23T55JLT4:8:1444:31338:8230,LH00995:25:23T55JLT4:8:2276:37826:9463	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein_kinase_domain(88%)|KRAB_box(100%),Zinc_finger__C2H2_type(78%)	CDS	intron	4	0	-/-	+/+	.	4	ENST00000261799	.	translocation	0.0002550369803621525	0.0	0.00012751849018107625																																						1173_FM	Arriba
fp_audit	1173_FM	fusion	PDGFRB--ZNF701	PDGFRB--ZNF701	PDGFRB--ZNF701	FP	FP		Arriba		dev_rna_exp0016	1173_FM	altera_exact	1173	clinical	patient	crc	Colorectal				77	unknown			False	1173_FM_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		130.00	38.00	52.77			AIH_Ext13_RNA	C02		False		dev_rna_exp0016_lib_s27	200.00		37.21	dev_rna_exp0016	C04		False		1173_FM_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FM_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr5	chr19	PDGFRB	ZNF701	150119522	52561499	chr5:150119522-chr19:52561499	-,+	Arriba	1	0	4		4	PASS	out-of-frame	PDGFRB--ZNF701	PDGFRB--ZNF701	confidence:low;duplicates(7)	low	translocation	CDS	intron	15680	2	7.0	0.0	0.0	0.0									4	0	False	duplicates(7)		FAIL		False	chr5:150119522	chr19:52561499	chr5:150119522-chr19:52561499	.	.	low	15680	2	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(4.0<8.0)	duplicates(7)	TTCAACAGCCTCTACACCACCCTGAGCGACGTGTGGTCCTTCGGGATCCTGCTCTGGGAGATCTTCACCTTGG___GTGGCACCCCTTACCCAGAGCTGCCCATGAACGAGCAGTTCTACA|CACACTGGCCTGCTGTACTTATTTGAGAAATAATGTTAATTTGCCTCCAGATTTTTTTTTTTTTTTGAGACGGA	PDGFRB	ZNF701	ENSG00000113721	ENSG00000167562	FNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY|thwpavli*	LH00995:25:23T55JLT4:1:2113:44476:12490,LH00995:25:23T55JLT4:2:2433:20020:14914,LH00995:25:23T55JLT4:3:1136:46975:23294,LH00995:25:23T55JLT4:4:1308:20610:2653,LH00995:25:23T55JLT4:4:1308:20618:2667,LH00995:25:23T55JLT4:5:2141:24081:4321,LH00995:25:23T55JLT4:5:2273:37243:18684,LH00995:25:23T55JLT4:5:2490:47938:19945,LH00995:25:23T55JLT4:8:1427:6833:11299,LH00995:25:23T55JLT4:8:1444:31338:8230,LH00995:25:23T55JLT4:8:2276:37826:9463	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein_kinase_domain(88%)|KRAB_box(100%),Zinc_finger__C2H2_type(78%)	CDS	intron	4	0	-/-	+/+	.	4	ENST00000261799	.	translocation	0.0002550369803621525	0.0	0.00012751849018107625																																						1173_FM	Arriba
fp_audit	1173_FM	fusion	PDGFRB--ZNF808	PDGFRB--ZNF808	PDGFRB--ZNF808	FP	FP		Arriba		dev_rna_exp0016	1173_FM	altera_exact	1173	clinical	patient	crc	Colorectal				77	unknown			False	1173_FM_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		130.00	38.00	52.77			AIH_Ext13_RNA	C02		False		dev_rna_exp0016_lib_s27	200.00		37.21	dev_rna_exp0016	C04		False		1173_FM_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FM_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr5	chr19	PDGFRB	ZNF808	150119522	52561499	chr5:150119522-chr19:52561499	-,+	Arriba	1	0	4		4	PASS	out-of-frame	PDGFRB--ZNF808	PDGFRB--ZNF808	confidence:low;duplicates(7)	low	translocation	CDS	intron	15680	2	7.0	0.0	0.0	0.0									4	0	False	duplicates(7)		FAIL		False	chr5:150119522	chr19:52561499	chr5:150119522-chr19:52561499	.	.	low	15680	2	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(4.0<8.0)	duplicates(7)	TTCAACAGCCTCTACACCACCCTGAGCGACGTGTGGTCCTTCGGGATCCTGCTCTGGGAGATCTTCACCTTGG___GTGGCACCCCTTACCCAGAGCTGCCCATGAACGAGCAGTTCTACA|CACACTGGCCTGCTGTACTTATTTGAGAAATAATGTTAATTTGCCTCCAGATTTTTTTTTTTTTTTGAGACGGA	PDGFRB	ZNF808	ENSG00000113721	ENSG00000198482	FNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY|thwpavli*	LH00995:25:23T55JLT4:1:2113:44476:12490,LH00995:25:23T55JLT4:2:2433:20020:14914,LH00995:25:23T55JLT4:3:1136:46975:23294,LH00995:25:23T55JLT4:4:1308:20610:2653,LH00995:25:23T55JLT4:4:1308:20618:2667,LH00995:25:23T55JLT4:5:2141:24081:4321,LH00995:25:23T55JLT4:5:2273:37243:18684,LH00995:25:23T55JLT4:5:2490:47938:19945,LH00995:25:23T55JLT4:8:1427:6833:11299,LH00995:25:23T55JLT4:8:1444:31338:8230,LH00995:25:23T55JLT4:8:2276:37826:9463	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein_kinase_domain(88%)|	CDS	intron	4	0	-/-	+/+	.	4	ENST00000261799	.	translocation	0.0002550369803621525	0.0	0.00012751849018107625																																						1173_FM	Arriba
fp_audit	1173_FM	fusion	PDGFRB--ZNF808	PDGFRB--ZNF808	PDGFRB--ZNF808	FP	FP		Arriba		dev_rna_exp0016	1173_FM	altera_exact	1173	clinical	patient	crc	Colorectal				77	unknown			False	1173_FM_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		130.00	38.00	52.77			AIH_Ext13_RNA	C02		False		dev_rna_exp0016_lib_s27	200.00		37.21	dev_rna_exp0016	C04		False		1173_FM_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FM_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr5	chr19	PDGFRB	ZNF808	150119522	52561499	chr5:150119522-chr19:52561499	-,+	Arriba	1	0	4		4	PASS	out-of-frame	PDGFRB--ZNF808	PDGFRB--ZNF808	confidence:low;duplicates(7)	low	translocation	CDS	intron	15680	2	7.0	0.0	0.0	0.0									4	0	False	duplicates(7)		FAIL		False	chr5:150119522	chr19:52561499	chr5:150119522-chr19:52561499	.	.	low	15680	2	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(4.0<8.0)	duplicates(7)	TTCAACAGCCTCTACACCACCCTGAGCGACGTGTGGTCCTTCGGGATCCTGCTCTGGGAGATCTTCACCTTGG___GTGGCACCCCTTACCCAGAGCTGCCCATGAACGAGCAGTTCTACA|CACACTGGCCTGCTGTACTTATTTGAGAAATAATGTTAATTTGCCTCCAGATTTTTTTTTTTTTTTGAGACGGA	PDGFRB	ZNF808	ENSG00000113721	ENSG00000198482	FNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY|thwpavli*	LH00995:25:23T55JLT4:1:2113:44476:12490,LH00995:25:23T55JLT4:2:2433:20020:14914,LH00995:25:23T55JLT4:3:1136:46975:23294,LH00995:25:23T55JLT4:4:1308:20610:2653,LH00995:25:23T55JLT4:4:1308:20618:2667,LH00995:25:23T55JLT4:5:2141:24081:4321,LH00995:25:23T55JLT4:5:2273:37243:18684,LH00995:25:23T55JLT4:5:2490:47938:19945,LH00995:25:23T55JLT4:8:1427:6833:11299,LH00995:25:23T55JLT4:8:1444:31338:8230,LH00995:25:23T55JLT4:8:2276:37826:9463	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein_kinase_domain(88%)|	CDS	intron	4	0	-/-	+/+	.	4	ENST00000261799	.	translocation	0.0002550369803621525	0.0	0.00012751849018107625																																						1173_FM	Arriba
fp_audit	1173_FWA	fusion	KAT2B--MET	MET--KAT2B	KAT2B--MET	FP	FP		Arriba		dev_rna_exp0016	1173_FWA	altera_exact	1173	clinical	patient	crc	Colorectal					unknown			False	1173_FWA_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		5.39	35.00	47.02			AIH_Ext12_RNA	C02		False		dev_rna_exp0016_lib_s70	100.00		3.18	dev_rna_exp0016	F09		False		1173_FWA_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr7	chr3	MET	KAT2B	116724249	20072333	chr7:116724249-chr3:20072333	+,+	Arriba	1	0	4		4	PASS		MET--KAT2B	KAT2B--MET	confidence:medium;duplicates(3),mismatches(3)	medium	translocation	exon/splice-site	CDS/splice-site	7	428	3.0	3.0	0.0	0.0									0	4		duplicates(3),mismatches(3)		FAIL		False	chr7:116724249	chr3:20072333	chr7:116724249-chr3:20072333	.	.	medium	7	428	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(3),mismatches(3)	GTTTcTTAAGCCGGTCtGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG|GCCGAGGAGTCTTGTAAATGTAATGGCTGGAAAAACCCTAACCCCTCACCCACTCCCCCCAGAGCCGACCTGCAGCAAATAATTGTCAGTCTAACAGAATCCTGTCGGAG	MET	KAT2B	ENSG00000105976	ENSG00000114166	.	LH00995:25:23T55JLT4:1:1244:32203:21248,LH00995:25:23T55JLT4:1:1411:6760:13723,LH00995:25:23T55JLT4:1:2352:15611:16189,LH00995:25:23T55JLT4:2:2461:47364:1322,LH00995:25:23T55JLT4:3:1169:23806:18978,LH00995:25:23T55JLT4:4:1127:18677:27665,LH00995:25:23T55JLT4:5:1158:24073:8370,LH00995:25:23T55JLT4:5:2437:39411:8539,LH00995:25:23T55JLT4:8:2496:40665:29291,LH00995:25:23T55JLT4:5:2431:16031:25493	.	Sema_domain(79%)|Acetyltransferase_(GNAT)_family(100%),Bromodomain(100%),PCAF_(P300/CBP-associated_factor)_N-terminal_domain(88%)	exon/splice-site	CDS/splice-site	0	4	+/+	+/+	.	4	ENST00000495962	ENST00000263754	translocation	0.0	0.009259259259259259	0.004629629629629629																																						1173_FWA	Arriba
fp_audit	1173_FWA	fusion	KAT2B--MET	MET--KAT2B	KAT2B--MET	FP	FP		Arriba		dev_rna_exp0016	1173_FWA	altera_exact	1173	clinical	patient	crc	Colorectal					unknown			False	1173_FWA_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		5.39	35.00	47.02			AIH_Ext12_RNA	C02		False		dev_rna_exp0016_lib_s70	100.00		3.18	dev_rna_exp0016	F09		False		1173_FWA_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr7	chr3	MET	KAT2B	116724249	20072333	chr7:116724249-chr3:20072333	+,+	STAR-Fusion	1	0	7	0.0187	7	FAIL		MET--KAT2B	KAT2B--MET	"[""INTERCHROMOSOMAL[chr7--chr3]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8892	False	False	False	GT	AG	7			Read count too low: 7 < 8																																									0	.	.	.	.	0.0187	FAIL	.	.	.	MET--KAT2B	7	LH00995:25:23T55JLT4:1:1244:32203:21248,LH00995:25:23T55JLT4:1:1411:6760:13723,LH00995:25:23T55JLT4:1:2352:15611:16189,LH00995:25:23T55JLT4:2:2461:47364:1322,LH00995:25:23T55JLT4:3:1169:23806:18978,LH00995:25:23T55JLT4:5:1158:24073:8370,LH00995:25:23T55JLT4:5:2431:16031:25493	YES_LDAS	GT	1.9656	chr7:116724249:+	MET^ENSG00000105976.16	.	.	.	AG	1.8892	chr3:20072333:+	KAT2B^ENSG00000114166.8	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr7--chr3]""]"		False	chr7:116724249-chr3:20072333	5.5	0.0	Read count too low: 7 < 8	7	1173_FWA	STAR-Fusion
fp_audit	1173_FWA	fusion	KAT2B--MET	MET--KAT2B	KAT2B--MET	FP	FP		Arriba		dev_rna_exp0016	1173_FWA	altera_exact	1173	clinical	patient	crc	Colorectal					unknown			False	1173_FWA_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		5.39	35.00	47.02			AIH_Ext12_RNA	C02		False		dev_rna_exp0016_lib_s70	100.00		3.18	dev_rna_exp0016	F09		False		1173_FWA_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr7	chr3	MET	KAT2B	116724249	20072333	chr7:116724249-chr3:20072333	+,+	Arriba	1	0	4		4	PASS		MET--KAT2B	KAT2B--MET	confidence:medium;duplicates(3),mismatches(3)	medium	translocation	exon/splice-site	CDS/splice-site	7	428	3.0	3.0	0.0	0.0									0	4		duplicates(3),mismatches(3)		FAIL		False	chr7:116724249	chr3:20072333	chr7:116724249-chr3:20072333	.	.	medium	7	428	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(3),mismatches(3)	GTTTcTTAAGCCGGTCtGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG|GCCGAGGAGTCTTGTAAATGTAATGGCTGGAAAAACCCTAACCCCTCACCCACTCCCCCCAGAGCCGACCTGCAGCAAATAATTGTCAGTCTAACAGAATCCTGTCGGAG	MET	KAT2B	ENSG00000105976	ENSG00000114166	.	LH00995:25:23T55JLT4:1:1244:32203:21248,LH00995:25:23T55JLT4:1:1411:6760:13723,LH00995:25:23T55JLT4:1:2352:15611:16189,LH00995:25:23T55JLT4:2:2461:47364:1322,LH00995:25:23T55JLT4:3:1169:23806:18978,LH00995:25:23T55JLT4:4:1127:18677:27665,LH00995:25:23T55JLT4:5:1158:24073:8370,LH00995:25:23T55JLT4:5:2437:39411:8539,LH00995:25:23T55JLT4:8:2496:40665:29291,LH00995:25:23T55JLT4:5:2431:16031:25493	.	Sema_domain(79%)|Acetyltransferase_(GNAT)_family(100%),Bromodomain(100%),PCAF_(P300/CBP-associated_factor)_N-terminal_domain(88%)	exon/splice-site	CDS/splice-site	0	4	+/+	+/+	.	4	ENST00000495962	ENST00000263754	translocation	0.0	0.009259259259259259	0.004629629629629629																																						1173_FWA	Arriba
fp_audit	1173_FWA	fusion	KAT2B--MET	MET--KAT2B	KAT2B--MET	FP	FP		Arriba		dev_rna_exp0016	1173_FWA	altera_exact	1173	clinical	patient	crc	Colorectal					unknown			False	1173_FWA_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		5.39	35.00	47.02			AIH_Ext12_RNA	C02		False		dev_rna_exp0016_lib_s70	100.00		3.18	dev_rna_exp0016	F09		False		1173_FWA_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr7	chr3	MET	KAT2B	116724249	20072333	chr7:116724249-chr3:20072333	+,+	STAR-Fusion	1	0	7	0.0187	7	FAIL		MET--KAT2B	KAT2B--MET	"[""INTERCHROMOSOMAL[chr7--chr3]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8892	False	False	False	GT	AG	7			Read count too low: 7 < 8																																									0	.	.	.	.	0.0187	FAIL	.	.	.	MET--KAT2B	7	LH00995:25:23T55JLT4:1:1244:32203:21248,LH00995:25:23T55JLT4:1:1411:6760:13723,LH00995:25:23T55JLT4:1:2352:15611:16189,LH00995:25:23T55JLT4:2:2461:47364:1322,LH00995:25:23T55JLT4:3:1169:23806:18978,LH00995:25:23T55JLT4:5:1158:24073:8370,LH00995:25:23T55JLT4:5:2431:16031:25493	YES_LDAS	GT	1.9656	chr7:116724249:+	MET^ENSG00000105976.16	.	.	.	AG	1.8892	chr3:20072333:+	KAT2B^ENSG00000114166.8	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr7--chr3]""]"		False	chr7:116724249-chr3:20072333	5.5	0.0	Read count too low: 7 < 8	7	1173_FWA	STAR-Fusion
fp_audit	1173_H2E	fusion	AXL--HNRNPUL1	HNRNPUL1--AXL	AXL--HNRNPUL1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr19	HNRNPUL1	AXL	41268322	41262465	chr19:41268322-chr19:41262465	+,-	Arriba	1	0	14		14	PASS	out-of-frame	HNRNPUL1--AXL	AXL--HNRNPUL1	confidence:medium;duplicates(2)	medium	inversion	CDS	intergenic	4260	8	2.0	0.0	0.0	0.0									8	6	False	duplicates(2)		FAIL		False	chr19:41268322	chr19:41262465	chr19:41268322-chr19:41262465	.	.	medium	4260	8	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(2)	ACTCGGGGCCGGACGGACATT___ATGCCATGGACAATATTACCAGGCAGAACCAATTCTACGATACCCAAGTCATCAAACAAGAAAACGAGTCAGGCTACGAGAGGAGACCACTGGAAATGGA|TTGAACTGTCCCCGGTTCTCAGGAGCCGCCACTGGAGGGCGTCCGGGCGCTGCCAAGGGTTTCTCCATTTGCTGCCGGCCACACCCGCGAACGCCCGCTCGCGAGTGCGTGCCAGA	HNRNPUL1	AXL(699),HNRNPUL1(31)	ENSG00000105323	.	SGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMd|*	LH00995:25:23T55JLT4:1:1285:20618:16680,LH00995:25:23T55JLT4:2:1254:5255:11649,LH00995:25:23T55JLT4:5:1349:33133:26755,LH00995:25:23T55JLT4:6:1185:17220:17016,LH00995:25:23T55JLT4:6:1262:7334:25143,LH00995:25:23T55JLT4:6:1262:7343:25157,LH00995:25:23T55JLT4:8:2169:11541:12700,LH00995:25:23T55JLT4:1:1291:51134:26208,LH00995:25:23T55JLT4:1:2220:38449:8917,LH00995:25:23T55JLT4:2:2113:38052:15797,LH00995:25:23T55JLT4:2:2470:37081:18235,LH00995:25:23T55JLT4:5:1491:2610:14662,LH00995:25:23T55JLT4:6:1134:23256:24190,LH00995:25:23T55JLT4:6:1155:16128:24989,LH00995:25:23T55JLT4:6:2323:7294:17198,LH00995:25:23T55JLT4:8:2450:5555:1687	out-of-frame	SAP_domain(100%)|	CDS	intergenic	8	6	+/+	./-	.	14	ENST00000392006	.	inversion	0.0018744142455482662	0.42857142857142855	0.2152229214084884																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	AXL--HNRNPUL1	HNRNPUL1--AXL	AXL--HNRNPUL1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr19	HNRNPUL1	AXL	41268322	41262465	chr19:41268322-chr19:41262465	+,-	Arriba	1	0	14		14	PASS	out-of-frame	HNRNPUL1--AXL	AXL--HNRNPUL1	confidence:medium;duplicates(2)	medium	inversion	CDS	intergenic	4260	8	2.0	0.0	0.0	0.0									8	6	False	duplicates(2)		FAIL		False	chr19:41268322	chr19:41262465	chr19:41268322-chr19:41262465	.	.	medium	4260	8	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(2)	ACTCGGGGCCGGACGGACATT___ATGCCATGGACAATATTACCAGGCAGAACCAATTCTACGATACCCAAGTCATCAAACAAGAAAACGAGTCAGGCTACGAGAGGAGACCACTGGAAATGGA|TTGAACTGTCCCCGGTTCTCAGGAGCCGCCACTGGAGGGCGTCCGGGCGCTGCCAAGGGTTTCTCCATTTGCTGCCGGCCACACCCGCGAACGCCCGCTCGCGAGTGCGTGCCAGA	HNRNPUL1	AXL(699),HNRNPUL1(31)	ENSG00000105323	.	SGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMd|*	LH00995:25:23T55JLT4:1:1285:20618:16680,LH00995:25:23T55JLT4:2:1254:5255:11649,LH00995:25:23T55JLT4:5:1349:33133:26755,LH00995:25:23T55JLT4:6:1185:17220:17016,LH00995:25:23T55JLT4:6:1262:7334:25143,LH00995:25:23T55JLT4:6:1262:7343:25157,LH00995:25:23T55JLT4:8:2169:11541:12700,LH00995:25:23T55JLT4:1:1291:51134:26208,LH00995:25:23T55JLT4:1:2220:38449:8917,LH00995:25:23T55JLT4:2:2113:38052:15797,LH00995:25:23T55JLT4:2:2470:37081:18235,LH00995:25:23T55JLT4:5:1491:2610:14662,LH00995:25:23T55JLT4:6:1134:23256:24190,LH00995:25:23T55JLT4:6:1155:16128:24989,LH00995:25:23T55JLT4:6:2323:7294:17198,LH00995:25:23T55JLT4:8:2450:5555:1687	out-of-frame	SAP_domain(100%)|	CDS	intergenic	8	6	+/+	./-	.	14	ENST00000392006	.	inversion	0.0018744142455482662	0.42857142857142855	0.2152229214084884																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128480191	128758115	chr11:128480191-chr11:128758115	-,+	Arriba	1	0	1		1	PASS	out-of-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	1852	10498													0	1	False			FAIL		False	chr11:128480191	chr11:128758115	chr11:128480191-chr11:128758115	.	.	low	1852	10498	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGACAAGCCTGTCATTCCTGCTGCTGCCCTAGCTGGCTACACAG|GAGGCTCTGTCGGTGGTGAGCGACGACCAGTCCCTCTTTGACTCAGCGTACGGAGCGGCAGC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	DKPVIPAAALAGYT|ggsvggerrpvpl*	LH00995:25:23T55JLT4:8:2486:42332:26993	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	-/-	+/+	.	1	ENST00000392668	ENST00000527786	inversion	0.0	9.524716639679969e-05	4.7623583198399846e-05																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128484823	128758115	chr11:128484823-chr11:128758115	-,+	Arriba	1	0	1		1	PASS	out-of-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4776	10498													1	0	False			FAIL		False	chr11:128484823	chr11:128758115	chr11:128484823-chr11:128758115	.	.	low	4776	10498	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GTCCTATCAGACGCTCCATCCCATCAGCTCGGAAGAGCTCCTCTCCCTCAAGTATGAGAATGACTACCCCTCGGTCATTCTCCGAGACCCTCTCCAGACAGACACCTTGCAGAATGACTACTTTGCTATCAAACAAGAAGTCGTCACtCCAGACAACATGTGCATGGGGAGGACCAGTCGTG|GAGGCTCTGTCGGTGGTGAGCGACGACCAGTCCCTCTTTGACTCAGCGTACGGAGC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	SYQTLHPISSEELLSLKYENDYPSVILRDPLQTDTLQNDYFAIKQEVVTPDNMCMGRTSR|ggsvggerrpvpl*	LH00995:25:23T55JLT4:5:1349:31127:28744	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000392668	ENST00000527786	inversion	0.00020933640360058616	0.0	0.00010466820180029308																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128521913	128781958	chr11:128521913-chr11:128781958	-,+	Arriba	1	0	1		1	PASS	in-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	13937	5827													1	0	True			FAIL		False	chr11:128521913	chr11:128781958	chr11:128521913-chr11:128781958	.	.	low	13937	5827	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CTCATTAAAAAGAAAAACAACAGTAACTGCAAACTTGCTACCATCCCGTACGTCCCCCACTCCTGGCACCATGAAGGCGGCCGTCGATCTCAAGCCGACTCTCACCATCATCAAGACGGAAAAAGTCGATCTGGAGCTTTTCCCCTCCCCGG|GTTCACTGCTGGCCTATAATACAACCTCCC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	MKAAVDLKPTLTIIKTEKVDLELFPSP|gSLLAYNTTS	LH00995:25:23T55JLT4:6:2381:2836:13009	in-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(0%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000535549	ENST00000344954	inversion	7.174630506528914e-05	0.0	3.587315253264457e-05																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128521912	128768120	chr11:128521912-chr11:128768120	-,+	Arriba	1	0	1		1	PASS	out-of-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	intron	CDS/splice-site	13937	7711													0	1	False			FAIL		False	chr11:128521912	chr11:128768120	chr11:128521912-chr11:128768120	.	.	low	13937	7711	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAGCTTTTCCCCTCCCCGGG|AGTCTCCGGTGGACTGCAGCGTTAGCAAATGCAGCAAGCTGGTGGGCGGAGGCGAGTCCAACCCCATGAACTACAACAGCTATATGGAC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	ELFPSPg|vsgglqr*	LH00995:25:23T55JLT4:2:1262:27462:26741	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	intron	CDS/splice-site	0	1	-/-	+/+	.	1	ENST00000535549	ENST00000281428	inversion	0.0	0.00012966804979253112	6.483402489626556e-05																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128480191	128758115	chr11:128480191-chr11:128758115	-,+	Arriba	1	0	1		1	PASS	out-of-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	1852	10498													0	1	False			FAIL		False	chr11:128480191	chr11:128758115	chr11:128480191-chr11:128758115	.	.	low	1852	10498	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGACAAGCCTGTCATTCCTGCTGCTGCCCTAGCTGGCTACACAG|GAGGCTCTGTCGGTGGTGAGCGACGACCAGTCCCTCTTTGACTCAGCGTACGGAGCGGCAGC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	DKPVIPAAALAGYT|ggsvggerrpvpl*	LH00995:25:23T55JLT4:8:2486:42332:26993	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	-/-	+/+	.	1	ENST00000392668	ENST00000527786	inversion	0.0	9.524716639679969e-05	4.7623583198399846e-05																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128484823	128758115	chr11:128484823-chr11:128758115	-,+	Arriba	1	0	1		1	PASS	out-of-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4776	10498													1	0	False			FAIL		False	chr11:128484823	chr11:128758115	chr11:128484823-chr11:128758115	.	.	low	4776	10498	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GTCCTATCAGACGCTCCATCCCATCAGCTCGGAAGAGCTCCTCTCCCTCAAGTATGAGAATGACTACCCCTCGGTCATTCTCCGAGACCCTCTCCAGACAGACACCTTGCAGAATGACTACTTTGCTATCAAACAAGAAGTCGTCACtCCAGACAACATGTGCATGGGGAGGACCAGTCGTG|GAGGCTCTGTCGGTGGTGAGCGACGACCAGTCCCTCTTTGACTCAGCGTACGGAGC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	SYQTLHPISSEELLSLKYENDYPSVILRDPLQTDTLQNDYFAIKQEVVTPDNMCMGRTSR|ggsvggerrpvpl*	LH00995:25:23T55JLT4:5:1349:31127:28744	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000392668	ENST00000527786	inversion	0.00020933640360058616	0.0	0.00010466820180029308																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128521913	128781958	chr11:128521913-chr11:128781958	-,+	Arriba	1	0	1		1	PASS	in-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	13937	5827													1	0	True			FAIL		False	chr11:128521913	chr11:128781958	chr11:128521913-chr11:128781958	.	.	low	13937	5827	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CTCATTAAAAAGAAAAACAACAGTAACTGCAAACTTGCTACCATCCCGTACGTCCCCCACTCCTGGCACCATGAAGGCGGCCGTCGATCTCAAGCCGACTCTCACCATCATCAAGACGGAAAAAGTCGATCTGGAGCTTTTCCCCTCCCCGG|GTTCACTGCTGGCCTATAATACAACCTCCC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	MKAAVDLKPTLTIIKTEKVDLELFPSP|gSLLAYNTTS	LH00995:25:23T55JLT4:6:2381:2836:13009	in-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(0%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000535549	ENST00000344954	inversion	7.174630506528914e-05	0.0	3.587315253264457e-05																																						1173_H2E	Arriba
fp_audit	1173_H2E	fusion	ETS1--FLI1	ETS1--FLI1	ETS1--FLI1	FP	FP		Arriba		dev_rna_exp0016	1173_H2E	altera_exact	1173	clinical	patient	lung	Lung				78	unknown			False	1173_H2E_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		30.00	35.00	54.89			AIH_Ext12_RNA	H01		False		dev_rna_exp0016_lib_s67	100.00		81.80	dev_rna_exp0016	C09		False		1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr11	chr11	ETS1	FLI1	128521912	128768120	chr11:128521912-chr11:128768120	-,+	Arriba	1	0	1		1	PASS	out-of-frame	ETS1--FLI1	ETS1--FLI1	confidence:low	low	inversion	intron	CDS/splice-site	13937	7711													0	1	False			FAIL		False	chr11:128521912	chr11:128768120	chr11:128521912-chr11:128768120	.	.	low	13937	7711	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAGCTTTTCCCCTCCCCGGG|AGTCTCCGGTGGACTGCAGCGTTAGCAAATGCAGCAAGCTGGTGGGCGGAGGCGAGTCCAACCCCATGAACTACAACAGCTATATGGAC	ETS1	FLI1	ENSG00000134954	ENSG00000151702	ELFPSPg|vsgglqr*	LH00995:25:23T55JLT4:2:1262:27462:26741	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	intron	CDS/splice-site	0	1	-/-	+/+	.	1	ENST00000535549	ENST00000281428	inversion	0.0	0.00012966804979253112	6.483402489626556e-05																																						1173_H2E	Arriba
fp_audit	1173_HOB	fusion	NTRK1--TPM4	TPM4--NTRK1	NTRK1--TPM4	FP	FP		Arriba		dev_rna_exp0016	1173_HOB	altera_exact	1173	clinical	patient	crc	Colorectal				41	unknown			False	1173_HOB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		115.00	38.00	57.01			AIH_Ext13_RNA	D01		False		dev_rna_exp0016_lib_s20	200.00		71.69	dev_rna_exp0016	D03		False		1173_HOB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_HOB_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr19	chr1	TPM4	NTRK1	16093753	156874571	chr19:16093753-chr1:156874571	+,+	Arriba	1	0	36		36	PASS	in-frame	TPM4--NTRK1	NTRK1--TPM4	confidence:medium;duplicates(141),mismatches(103),multimappers(36)	medium	translocation	CDS/splice-site	CDS/splice-site	10714	11013	141.0	103.0	0.0	36.0									0	36	True	duplicates(141),mismatches(103),multimappers(36)		FAIL		False	chr19:16093753	chr1:156874571	chr19:16093753-chr1:156874571	.	.	medium	10714	11013	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(141),mismatches(103),multimappers(36)	CTGGAAAAGACAATTGATGACCTGGAAG|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGG	TPM4	NTRK1	ENSG00000167460	ENSG00000198400	LEKTIDDLE|dTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCGRRNKF	LH00995:25:23T55JLT4:2:1105:16233:2892,LH00995:25:23T55JLT4:2:1117:27268:26432,LH00995:25:23T55JLT4:2:1117:27276:26418,LH00995:25:23T55JLT4:2:1124:49111:14606,LH00995:25:23T55JLT4:2:1124:50923:9674,LH00995:25:23T55JLT4:2:1125:49289:6283,LH00995:25:23T55JLT4:2:1127:44807:11299,LH00995:25:23T55JLT4:2:1132:28425:27399,LH00995:25:23T55JLT4:2:1158:18644:26628,LH00995:25:23T55JLT4:2:1158:8637:14536,LH00995:25:23T55JLT4:2:1163:9551:7628,LH00995:25:23T55JLT4:2:1169:49864:21010,LH00995:25:23T55JLT4:2:1170:17261:17478,LH00995:25:23T55JLT4:2:1176:47048:6100,LH00995:25:23T55JLT4:2:1186:44443:22775,LH00995:25:23T55JLT4:2:1192:2060:12644,LH00995:25:23T55JLT4:2:1193:10829:15138,LH00995:25:23T55JLT4:2:1193:10837:15152,LH00995:25:23T55JLT4:2:1197:31459:13009,LH00995:25:23T55JLT4:2:1203:26645:9379,LH00995:25:23T55JLT4:2:1205:44055:2261,LH00995:25:23T55JLT4:2:1211:48205:25956,LH00995:25:23T55JLT4:2:1212:29242:3032,LH00995:25:23T55JLT4:2:1212:42987:6128,LH00995:25:23T55JLT4:2:1213:4139:22467,LH00995:25:23T55JLT4:2:1215:17059:25479,LH00995:25:23T55JLT4:2:1215:29930:8819,LH00995:25:23T55JLT4:2:1216:15861:18361,LH00995:25:23T55JLT4:2:1221:41175:19580,LH00995:25:23T55JLT4:2:1235:20287:11846,LH00995:25:23T55JLT4:2:1242:27543:7712,LH00995:25:23T55JLT4:2:1248:9082:29543,LH00995:25:23T55JLT4:2:1249:31313:6591,LH00995:25:23T55JLT4:2:1253:22511:21864,LH00995:25:23T55JLT4:2:1256:1752:20631,LH00995:25:23T55JLT4:2:1259:35132:22845,LH00995:25:23T55JLT4:2:1259:35140:22831,LH00995:25:23T55JLT4:2:1264:30868:19440,LH00995:25:23T55JLT4:2:1272:27115:21290,LH00995:25:23T55JLT4:2:1273:44524:19020,LH00995:25:23T55JLT4:2:1277:34606:20701,LH00995:25:23T55JLT4:2:1278:33481:1294,LH00995:25:23T55JLT4:2:1295:11048:8707,LH00995:25:23T55JLT4:2:1307:38756:26993,LH00995:25:23T55JLT4:2:1308:18749:20253,LH00995:25:23T55JLT4:2:1308:18766:20253,LH00995:25:23T55JLT4:2:1308:43877:21682,LH00995:25:23T55JLT4:2:1321:50923:27749,LH00995:25:23T55JLT4:2:1326:5563:15208,LH00995:25:23T55JLT4:2:1334:1841:19216,LH00995:25:23T55JLT4:2:1343:23361:14508,LH00995:25:23T55JLT4:2:1353:2383:15839,LH00995:25:23T55JLT4:2:1357:37632:22523,LH00995:25:23T55JLT4:2:1367:42817:1855,LH00995:25:23T55JLT4:2:1370:42890:15853,LH00995:25:23T55JLT4:2:1371:4293:1995,LH00995:25:23T55JLT4:2:1377:13871:5358,LH00995:25:23T55JLT4:2:1382:48634:19272,LH00995:25:23T55JLT4:2:1392:29744:14718,LH00995:25:23T55JLT4:2:1396:47809:11789,LH00995:25:23T55JLT4:2:1397:25246:19090,LH00995:25:23T55JLT4:2:1413:41223:27539,LH00995:25:23T55JLT4:2:1414:26645:23532,LH00995:25:23T55JLT4:2:1421:27446:13737,LH00995:25:23T55JLT4:2:1425:50503:12896,LH00995:25:23T55JLT4:2:1426:7124:25227,LH00995:25:23T55JLT4:2:1429:47606:11832,LH00995:25:23T55JLT4:2:1431:43165:13387,LH00995:25:23T55JLT4:2:1433:35124:12742,LH00995:25:23T55JLT4:2:1433:43586:22551,LH00995:25:23T55JLT4:2:1434:43845:16806,LH00995:25:23T55JLT4:2:1440:22074:8777,LH00995:25:23T55JLT4:2:1441:39444:2962,LH00995:25:23T55JLT4:2:1442:49216:11537,LH00995:25:23T55JLT4:2:1442:49224:11551,LH00995:25:23T55JLT4:2:1444:25683:19594,LH00995:25:23T55JLT4:2:1451:14025:11593,LH00995:25:23T55JLT4:2:1465:49079:3704,LH00995:25:23T55JLT4:2:1470:24234:14676,LH00995:25:23T55JLT4:2:1471:49516:1518,LH00995:25:23T55JLT4:2:1479:10538:5806,LH00995:25:23T55JLT4:2:1479:10554:5806,LH00995:25:23T55JLT4:2:1481:47712:27707,LH00995:25:23T55JLT4:2:1484:30359:24611,LH00995:25:23T55JLT4:2:1490:47056:8160,LH00995:25:23T55JLT4:2:1491:18782:19356,LH00995:25:23T55JLT4:2:1491:42162:10640,LH00995:25:23T55JLT4:2:1496:4018:5050,LH00995:25:23T55JLT4:2:1498:14357:16568,LH00995:25:23T55JLT4:2:2101:19664:7039,LH00995:25:23T55JLT4:2:2111:17714:19328,LH00995:25:23T55JLT4:2:2120:23385:7600,LH00995:25:23T55JLT4:2:2126:23490:17535,LH00995:25:23T55JLT4:2:2132:30011:10024,LH00995:25:23T55JLT4:2:2135:30375:2948,LH00995:25:23T55JLT4:2:2144:35237:4195,LH00995:25:23T55JLT4:2:2144:45188:21654,LH00995:25:23T55JLT4:2:2148:24065:8749,LH00995:25:23T55JLT4:2:2155:17115:25634,LH00995:25:23T55JLT4:2:2164:24097:9449,LH00995:25:23T55JLT4:2:2166:29857:12896,LH00995:25:23T55JLT4:2:2167:30666:27525,LH00995:25:23T55JLT4:2:2171:13151:19636,LH00995:25:23T55JLT4:2:2176:27131:9828,LH00995:25:23T55JLT4:2:2179:19914:10444,LH00995:25:23T55JLT4:2:2183:22309:25606,LH00995:25:23T55JLT4:2:2183:4907:13905,LH00995:25:23T55JLT4:2:2184:23846:22775,LH00995:25:23T55JLT4:2:2187:42955:4391,LH00995:25:23T55JLT4:2:2191:24550:28478,LH00995:25:23T55JLT4:2:2192:42979:20855,LH00995:25:23T55JLT4:2:2194:1744:11257,LH00995:25:23T55JLT4:2:2195:40714:20939,LH00995:25:23T55JLT4:5:1101:19332:22663,LH00995:25:23T55JLT4:5:1101:33667:29557,LH00995:25:23T55JLT4:5:1112:14640:8370,LH00995:25:23T55JLT4:5:1119:46458:19118,LH00995:25:23T55JLT4:5:1119:46466:19104,LH00995:25:23T55JLT4:5:1120:34905:17072,LH00995:25:23T55JLT4:5:1126:45260:18782,LH00995:25:23T55JLT4:5:1127:22366:20071,LH00995:25:23T55JLT4:5:1128:42008:29095,LH00995:25:23T55JLT4:5:1138:49953:18557,LH00995:25:23T55JLT4:5:1140:31993:8300,LH00995:25:23T55JLT4:5:1145:18110:2976,LH00995:25:23T55JLT4:5:1145:18118:2990,LH00995:25:23T55JLT4:5:1145:18127:2976,LH00995:25:23T55JLT4:5:1152:23919:4181,LH00995:25:23T55JLT4:5:1152:26192:11313,LH00995:25:23T55JLT4:5:1155:40706:10500,LH00995:25:23T55JLT4:5:1164:27284:20968,LH00995:25:23T55JLT4:5:1168:42105:25844,LH00995:25:23T55JLT4:5:1172:6590:28562,LH00995:25:23T55JLT4:5:1178:33530:25423,LH00995:25:23T55JLT4:5:1205:45811:16007,LH00995:25:23T55JLT4:5:1205:7496:23406,LH00995:25:23T55JLT4:5:1212:13637:7193,LH00995:25:23T55JLT4:5:1225:22722:12700,LH00995:25:23T55JLT4:5:1226:26006:28198,LH00995:25:23T55JLT4:5:1234:2691:10795,LH00995:25:23T55JLT4:5:1235:48019:11733,LH00995:25:23T55JLT4:5:1253:4317:2990,LH00995:25:23T55JLT4:5:1262:46417:11481,LH00995:25:23T55JLT4:5:1270:35188:9183,LH00995:25:23T55JLT4:5:1276:2214:23083,LH00995:25:23T55JLT4:5:1286:47995:19959,LH00995:25:23T55JLT4:5:1289:12027:4153,LH00995:25:23T55JLT4:5:1289:12043:4153,LH00995:25:23T55JLT4:5:1296:14874:24274,LH00995:25:23T55JLT4:5:1296:25100:26432,LH00995:25:23T55JLT4:5:1314:25391:29039,LH00995:25:23T55JLT4:5:1320:16711:20589,LH00995:25:23T55JLT4:5:1320:36588:5022,LH00995:25:23T55JLT4:5:1324:14082:10038,LH00995:25:23T55JLT4:5:1328:14575:10220,LH00995:25:23T55JLT4:5:1330:28118:26502,LH00995:25:23T55JLT4:5:1339:29113:18585,LH00995:25:23T55JLT4:5:1356:21338:28548,LH00995:25:23T55JLT4:5:1365:38513:4601,LH00995:25:23T55JLT4:5:1372:3330:19244,LH00995:25:23T55JLT4:5:1374:4503:11523,LH00995:25:23T55JLT4:5:1382:2343:3634,LH00995:25:23T55JLT4:5:1382:2351:3648,LH00995:25:23T55JLT4:5:1394:2667:3830,LH00995:25:23T55JLT4:5:1404:11420:10837,LH00995:25:23T55JLT4:5:1406:13960:16694,LH00995:25:23T55JLT4:5:1416:5765:16315,LH00995:25:23T55JLT4:5:1420:44743:9618,LH00995:25:23T55JLT4:5:1424:27673:24723,LH00995:25:23T55JLT4:5:1425:11193:4475,LH00995:25:23T55JLT4:5:1425:30909:28198,LH00995:25:23T55JLT4:5:1425:51069:8637,LH00995:25:23T55JLT4:5:1427:4042:10472,LH00995:25:23T55JLT4:5:1427:4050:10486,LH00995:25:23T55JLT4:5:1430:45900:12658,LH00995:25:23T55JLT4:5:1439:3128:25087,LH00995:25:23T55JLT4:5:1439:39808:29571,LH00995:25:23T55JLT4:5:1447:9195:14942,LH00995:25:23T55JLT4:5:1452:34201:13387,LH00995:25:23T55JLT4:5:1458:44508:17675,LH00995:25:23T55JLT4:5:1460:18167:7249,LH00995:25:23T55JLT4:5:1467:25909:19202,LH00995:25:23T55JLT4:5:1473:11808:27231,LH00995:25:23T55JLT4:5:1483:29177:28590,LH00995:25:23T55JLT4:5:1485:18863:25241,LH00995:25:23T55JLT4:5:1485:6016:2569,LH00995:25:23T55JLT4:5:1494:46620:18249,LH00995:25:23T55JLT4:5:2101:16832:24779,LH00995:25:23T55JLT4:5:2107:26063:27651,LH00995:25:23T55JLT4:5:2111:49038:27035,LH00995:25:23T55JLT4:5:2113:19348:1701,LH00995:25:23T55JLT4:5:2114:15052:11803,LH00995:25:23T55JLT4:5:2117:19656:16498,LH00995:25:23T55JLT4:5:2128:6695:25578,LH00995:25:23T55JLT4:5:2137:25869:3158,LH00995:25:23T55JLT4:5:2146:42194:6857,LH00995:25:23T55JLT4:5:2153:30820:10893,LH00995:25:23T55JLT4:5:2153:38400:21164,LH00995:25:23T55JLT4:5:2156:1963:26628,LH00995:25:23T55JLT4:5:2156:22309:22131,LH00995:25:23T55JLT4:5:2164:18507:21794,LH00995:25:23T55JLT4:5:2166:3508:18571,LH00995:25:23T55JLT4:5:2175:8289:6563,LH00995:25:23T55JLT4:5:2176:11574:26825,LH00995:25:23T55JLT4:5:2185:43060:6983,LH00995:25:23T55JLT4:5:2196:31993:22845,LH00995:25:23T55JLT4:5:2206:6671:26404,LH00995:25:23T55JLT4:5:2211:21994:14886,LH00995:25:23T55JLT4:5:2211:31524:13037,LH00995:25:23T55JLT4:5:2214:30787:24120,LH00995:25:23T55JLT4:5:2215:4131:15475,LH00995:25:23T55JLT4:5:2215:48634:3606,LH00995:25:23T55JLT4:5:2217:50106:10556,LH00995:25:23T55JLT4:5:2231:6509:29627,LH00995:25:23T55JLT4:5:2239:5555:3704,LH00995:25:23T55JLT4:5:2241:1275:2037,LH00995:25:23T55JLT4:5:2241:5482:8455,LH00995:25:23T55JLT4:5:2243:50842:18221,LH00995:25:23T55JLT4:5:2246:39072:19720,LH00995:25:23T55JLT4:5:2251:204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fp_audit	1173_HOB	fusion	NTRK1--TPM4	TPM4--NTRK1	NTRK1--TPM4	FP	FP		Arriba		dev_rna_exp0016	1173_HOB	altera_exact	1173	clinical	patient	crc	Colorectal				41	unknown			False	1173_HOB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		115.00	38.00	57.01			AIH_Ext13_RNA	D01		False		dev_rna_exp0016_lib_s20	200.00		71.69	dev_rna_exp0016	D03		False		1173_HOB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_HOB_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr1	TPM4	NTRK1	16093753	156874571	chr19:16093753-chr1:156874571	+,+	Arriba	1	0	42		42	PASS	in-frame	TPM4--NTRK1	NTRK1--TPM4	confidence:medium;duplicates(142),mismatches(92),multimappers(34)	medium	translocation	CDS/splice-site	CDS/splice-site	7532	10164	142.0	92.0	0.0	34.0									0	42	True	duplicates(142),mismatches(92),multimappers(34)		FAIL		False	chr19:16093753	chr1:156874571	chr19:16093753-chr1:156874571	.	.	medium	7532	10164	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(142),mismatches(92),multimappers(34)	ACTGGAAAAGACAATTGATGACCTGGAAG|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAG	TPM4	NTRK1	ENSG00000167460	ENSG00000198400	LEKTIDDLE|dTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCGRRN	LH00995:25:23T55JLT4:1:1102:35350:16778,LH00995:25:23T55JLT4:1:1102:35827:5974,LH00995:25:23T55JLT4:1:1108:28498:29431,LH00995:25:23T55JLT4:1:1121:16800:14270,LH00995:25:23T55JLT4:1:1132:28077:8384,LH00995:25:23T55JLT4:1:1133:48205:14914,LH00995:25:23T55JLT4:1:1136:36337:26895,LH00995:25:23T55JLT4:1:1155:21015:10472,LH00995:25:23T55JLT4:1:1156:18968:29347,LH00995:25:23T55JLT4:1:1160:7294:12686,LH00995:25:23T55JLT4:1:1161:15789:13107,LH00995:25:23T55JLT4:1:1167:23118:26839,LH00995:25:23T55JLT4:1:1171:27098:2037,LH00995:25:23T55JLT4:1:1178:32600:25045,LH00995:25:23T55JLT4:1:1193:9098:21836,LH00995:25:23T55JLT4:1:1209:22932:10879,LH00995:25:23T55JLT4:1:1216:29064:21276,LH00995:25:23T55JLT4:1:1244:42704:27385,LH00995:25:23T55JLT4:1:1279:43934:1631,LH00995:25:23T55JLT4:1:1288:33853:14073,LH00995:25:23T55JLT4:1:1296:41798:17633,LH00995:25:23T55JLT4:1:1301:9939:14662,LH00995:25:23T55JLT4:1:1301:9956:14662,LH00995:25:23T55JLT4:1:1311:29930:20785,LH00995:25:23T55JLT4:1:1325:41790:22859,LH00995:25:23T55JLT4:1:1349:3799:20057,LH00995:25:23T55JLT4:1:1354:32964:8749,LH00995:25:23T55JLT4:1:1354:32980:8749,LH00995:25:23T55JLT4:1:1380:24307:8048,LH00995:25:23T55JLT4:1:1394:22277:16414,LH00995:25:23T55JLT4:1:1412:50365:7670,LH00995:25:23T55JLT4:1:1416:12553:15629,LH00995:25:23T55JLT4:1:1445:21419:25606,LH00995:25:23T55JLT4:1:1478:15522:12981,LH00995:25:23T55JLT4:1:1479:24979:16077,LH00995:25:23T55JLT4:1:1482:33894:22803,LH00995:25:23T55JLT4:1:2102:27770:8020,LH00995:25:23T55JLT4:1:2111:9786:6100,LH00995:25:23T55JLT4:1:2129:36297:5750,LH00995:25:23T55JLT4:1:2151:42081:6072,LH00995:25:23T55JLT4:1:2153:36272:6297,LH00995:25:23T55JLT4:1:2155:35221:20785,LH00995:25:23T55JLT4:1:2162:31791:14340,LH00995:25:23T55JLT4:1:2164:35738:15489,LH00995:25:23T55JLT4:1:2165:43295:17506,LH00995:25:23T55JLT4:1:2188:23280:27876,LH00995:25:23T55JLT4:1:2202:2796:14956,LH00995:25:23T55JLT4:1:2204:30423:19931,LH00995:25:23T55JLT4:1:2215:29865:19692,LH00995:25:23T55JLT4:1:2232:20392:10346,LH00995:25:23T55JLT4:1:2235:17496:23994,LH00995:25:23T55JLT4:1:2252:33934:15279,LH00995:25:23T55JLT4:1:2271:2189:19790,LH00995:25:23T55JLT4:1:2274:13491:18627,LH00995:25:23T55JLT4:1:2276:22414:19174,LH00995:25:23T55JLT4:1:2278:37518:3634,LH00995:25:23T55JLT4:1:2278:46749:18165,LH00995:25:23T55JLT4:1:2279:47526:22985,LH00995:25:23T55JLT4:1:2284:10441:19314,LH00995:25:23T55JLT4:1:2292:47073:1575,LH00995:25:23T55JLT4:1:2310:38764:21626,LH00995:25:23T55JLT4:1:2351:17520:22719,LH00995:25:23T55JLT4:1:2352:11169:10711,LH00995:25:23T55JLT4:1:2365:15570:5666,LH00995:25:23T55JLT4:1:2383:17795:17310,LH00995:25:23T55JLT4:1:2390:26103:9029,LH00995:25:23T55JLT4:1:2419:23701:1589,LH00995:25:23T55JLT4:1:2424:27608:24891,LH00995:25:23T55JLT4:1:2429:29897:15433,LH00995:25:23T55JLT4:1:2432:9074:7950,LH00995:25:23T55JLT4:1:2487:40536:20491,LH00995:25:23T55JLT4:1:2493:16646:1140,LH00995:25:23T55JLT4:2:1109:3710:27301,LH00995:25:23T55JLT4:2:1120:31532:3830,LH00995:25:23T55JLT4:2:1131:24995:4195,LH00995:25:23T55JLT4:2:1144:16678:23308,LH00995:25:23T55JLT4:2:1144:30715:21360,LH00995:25:23T55JLT4:2:1175:32074:19426,LH00995:25:23T55JLT4:2:1186:47048:7530,LH00995:25:23T55JLT4:2:1193:28635:26362,LH00995:25:23T55JLT4:2:1211:42534:29473,LH00995:25:23T55JLT4:2:1232:22471:13611,LH00995:25:23T55JLT4:2:1244:2125:28898,LH00995:25:23T55JLT4:2:1260:32049:4083,LH00995:25:23T55JLT4:2:1261:32033:29165,LH00995:25:23T55JLT4:2:1268:23248:8763,LH00995:25:23T55JLT4:2:1280:12593:27890,LH00995:25:23T55JLT4:2:1288:18814:14031,LH00995:25:23T55JLT4:2:1288:42130:25269,LH00995:25:23T55JLT4:2:1295:14146:10038,LH00995:25:23T55JLT4:2:1311:25084:11187,LH00995:25:23T55JLT4:2:1313:35471:12392,LH00995:25:23T55JLT4:2:1327:22649:4671,LH00995:25:23T55JL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fp_audit	1173_HOB	fusion	NTRK1--TPM4	TPM4--NTRK1	NTRK1--TPM4	FP	FP		Arriba		dev_rna_exp0016	1173_HOB	altera_exact	1173	clinical	patient	crc	Colorectal				41	unknown			False	1173_HOB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		115.00	38.00	57.01			AIH_Ext13_RNA	D01		False		dev_rna_exp0016_lib_s20	200.00		71.69	dev_rna_exp0016	D03		False		1173_HOB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_HOB_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr1	TPM4	NTRK1	16093753	156874571	chr19:16093753-chr1:156874571	+,+	Arriba	1	0	42		42	PASS	in-frame	TPM4--NTRK1	NTRK1--TPM4	confidence:medium;duplicates(142),mismatches(92),multimappers(34)	medium	translocation	CDS/splice-site	CDS/splice-site	7532	10164	142.0	92.0	0.0	34.0									0	42	True	duplicates(142),mismatches(92),multimappers(34)		FAIL		False	chr19:16093753	chr1:156874571	chr19:16093753-chr1:156874571	.	.	medium	7532	10164	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(142),mismatches(92),multimappers(34)	ACTGGAAAAGACAATTGATGACCTGGAAG|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAG	TPM4	NTRK1	ENSG00000167460	ENSG00000198400	LEKTIDDLE|dTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCGRRN	LH00995:25:23T55JLT4:1:1102:35350:16778,LH00995:25:23T55JLT4:1:1102:35827:5974,LH00995:25:23T55JLT4:1:1108:28498:29431,LH00995:25:23T55JLT4:1:1121:16800:14270,LH00995:25:23T55JLT4:1:1132:28077:8384,LH00995:25:23T55JLT4:1:1133:48205:14914,LH00995:25:23T55JLT4:1:1136:36337:26895,LH00995:25:23T55JLT4:1:1155:21015:10472,LH00995:25:23T55JLT4:1:1156:18968:29347,LH00995:25:23T55JLT4:1:1160:7294:12686,LH00995:25:23T55JLT4:1:1161:15789:13107,LH00995:25:23T55JLT4:1:1167:23118:26839,LH00995:25:23T55JLT4:1:1171:27098:2037,LH00995:25:23T55JLT4:1:1178:32600:25045,LH00995:25:23T55JLT4:1:1193:9098:21836,LH00995:25:23T55JLT4:1:1209:22932:10879,LH00995:25:23T55JLT4:1:1216:29064:21276,LH00995:25:23T55JLT4:1:1244:42704:27385,LH00995:25:23T55JLT4:1:1279:43934:1631,LH00995:25:23T55JLT4:1:1288:33853:14073,LH00995:25:23T55JLT4:1:1296:41798:17633,LH00995:25:23T55JLT4:1:1301:9939:14662,LH00995:25:23T55JLT4:1:1301:9956:14662,LH00995:25:23T55JLT4:1:1311:29930:20785,LH00995:25:23T55JLT4:1:1325:41790:22859,LH00995:25:23T55JLT4:1:1349:3799:20057,LH00995:25:23T55JLT4:1:1354:32964:8749,LH00995:25:23T55JLT4:1:1354:32980:8749,LH00995:25:23T55JLT4:1:1380:24307:8048,LH00995:25:23T55JLT4:1:1394:22277:16414,LH00995:25:23T55JLT4:1:1412:50365:7670,LH00995:25:23T55JLT4:1:1416:12553:15629,LH00995:25:23T55JLT4:1:1445:21419:25606,LH00995:25:23T55JLT4:1:1478:15522:12981,LH00995:25:23T55JLT4:1:1479:24979:16077,LH00995:25:23T55JLT4:1:1482:33894:22803,LH00995:25:23T55JLT4:1:2102:27770:8020,LH00995:25:23T55JLT4:1:2111:9786:6100,LH00995:25:23T55JLT4:1:2129:36297:5750,LH00995:25:23T55JLT4:1:2151:42081:6072,LH00995:25:23T55JLT4:1:2153:36272:6297,LH00995:25:23T55JLT4:1:2155:35221:20785,LH00995:25:23T55JLT4:1:2162:31791:14340,LH00995:25:23T55JLT4:1:2164:35738:15489,LH00995:25:23T55JLT4:1:2165:43295:17506,LH00995:25:23T55JLT4:1:2188:23280:27876,LH00995:25:23T55JLT4:1:2202:2796:14956,LH00995:25:23T55JLT4:1:2204:30423:19931,LH00995:25:23T55JLT4:1:2215:29865:19692,LH00995:25:23T55JLT4:1:2232:20392:10346,LH00995:25:23T55JLT4:1:2235:17496:23994,LH00995:25:23T55JLT4:1:2252:33934:15279,LH00995:25:23T55JLT4:1:2271:2189:19790,LH00995:25:23T55JLT4:1:2274:13491:18627,LH00995:25:23T55JLT4:1:2276:22414:19174,LH00995:25:23T55JLT4:1:2278:37518:3634,LH00995:25:23T55JLT4:1:2278:46749:18165,LH00995:25:23T55JLT4:1:2279:47526:22985,LH00995:25:23T55JLT4:1:2284:10441:19314,LH00995:25:23T55JLT4:1:2292:47073:1575,LH00995:25:23T55JLT4:1:2310:38764:21626,LH00995:25:23T55JLT4:1:2351:17520:22719,LH00995:25:23T55JLT4:1:2352:11169:10711,LH00995:25:23T55JLT4:1:2365:15570:5666,LH00995:25:23T55JLT4:1:2383:17795:17310,LH00995:25:23T55JLT4:1:2390:26103:9029,LH00995:25:23T55JLT4:1:2419:23701:1589,LH00995:25:23T55JLT4:1:2424:27608:24891,LH00995:25:23T55JLT4:1:2429:29897:15433,LH00995:25:23T55JLT4:1:2432:9074:7950,LH00995:25:23T55JLT4:1:2487:40536:20491,LH00995:25:23T55JLT4:1:2493:16646:1140,LH00995:25:23T55JLT4:2:1109:3710:27301,LH00995:25:23T55JLT4:2:1120:31532:3830,LH00995:25:23T55JLT4:2:1131:24995:4195,LH00995:25:23T55JLT4:2:1144:16678:23308,LH00995:25:23T55JLT4:2:1144:30715:21360,LH00995:25:23T55JLT4:2:1175:32074:19426,LH00995:25:23T55JLT4:2:1186:47048:7530,LH00995:25:23T55JLT4:2:1193:28635:26362,LH00995:25:23T55JLT4:2:1211:42534:29473,LH00995:25:23T55JLT4:2:1232:22471:13611,LH00995:25:23T55JLT4:2:1244:2125:28898,LH00995:25:23T55JLT4:2:1260:32049:4083,LH00995:25:23T55JLT4:2:1261:32033:29165,LH00995:25:23T55JLT4:2:1268:23248:8763,LH00995:25:23T55JLT4:2:1280:12593:27890,LH00995:25:23T55JLT4:2:1288:18814:14031,LH00995:25:23T55JLT4:2:1288:42130:25269,LH00995:25:23T55JLT4:2:1295:14146:10038,LH00995:25:23T55JLT4:2:1311:25084:11187,LH00995:25:23T55JLT4:2:1313:35471:12392,LH00995:25:23T55JLT4:2:1327:22649:4671,LH00995:25:23T55JL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fp_audit	1173_HOB	fusion	NTRK1--TPM4	TPM4--NTRK1	NTRK1--TPM4	FP	FP		Arriba		dev_rna_exp0016	1173_HOB	altera_exact	1173	clinical	patient	crc	Colorectal				41	unknown			False	1173_HOB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		115.00	38.00	57.01			AIH_Ext13_RNA	D01		False		dev_rna_exp0016_lib_s20	200.00		71.69	dev_rna_exp0016	D03		False		1173_HOB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_HOB_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr19	chr1	TPM4	NTRK1	16093753	156874571	chr19:16093753-chr1:156874571	+,+	Arriba	1	0	36		36	PASS	in-frame	TPM4--NTRK1	NTRK1--TPM4	confidence:medium;duplicates(141),mismatches(103),multimappers(36)	medium	translocation	CDS/splice-site	CDS/splice-site	10714	11013	141.0	103.0	0.0	36.0									0	36	True	duplicates(141),mismatches(103),multimappers(36)		FAIL		False	chr19:16093753	chr1:156874571	chr19:16093753-chr1:156874571	.	.	medium	10714	11013	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(141),mismatches(103),multimappers(36)	CTGGAAAAGACAATTGATGACCTGGAAG|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGG	TPM4	NTRK1	ENSG00000167460	ENSG00000198400	LEKTIDDLE|dTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCGRRNKF	LH00995:25:23T55JLT4:2:1105:16233:2892,LH00995:25:23T55JLT4:2:1117:27268:26432,LH00995:25:23T55JLT4:2:1117:27276:26418,LH00995:25:23T55JLT4:2:1124:49111:14606,LH00995:25:23T55JLT4:2:1124:50923:9674,LH00995:25:23T55JLT4:2:1125:49289:6283,LH00995:25:23T55JLT4:2:1127:44807:11299,LH00995:25:23T55JLT4:2:1132:28425:27399,LH00995:25:23T55JLT4:2:1158:18644:26628,LH00995:25:23T55JLT4:2:1158:8637:14536,LH00995:25:23T55JLT4:2:1163:9551:7628,LH00995:25:23T55JLT4:2:1169:49864:21010,LH00995:25:23T55JLT4:2:1170:17261:17478,LH00995:25:23T55JLT4:2:1176:47048:6100,LH00995:25:23T55JLT4:2:1186:44443:22775,LH00995:25:23T55JLT4:2:1192:2060:12644,LH00995:25:23T55JLT4:2:1193:10829:15138,LH00995:25:23T55JLT4:2:1193:10837:15152,LH00995:25:23T55JLT4:2:1197:31459:13009,LH00995:25:23T55JLT4:2:1203:26645:9379,LH00995:25:23T55JLT4:2:1205:44055:2261,LH00995:25:23T55JLT4:2:1211:48205:25956,LH00995:25:23T55JLT4:2:1212:29242:3032,LH00995:25:23T55JLT4:2:1212:42987:6128,LH00995:25:23T55JLT4:2:1213:4139:22467,LH00995:25:23T55JLT4:2:1215:17059:25479,LH00995:25:23T55JLT4:2:1215:29930:8819,LH00995:25:23T55JLT4:2:1216:15861:18361,LH00995:25:23T55JLT4:2:1221:41175:19580,LH00995:25:23T55JLT4:2:1235:20287:11846,LH00995:25:23T55JLT4:2:1242:27543:7712,LH00995:25:23T55JLT4:2:1248:9082:29543,LH00995:25:23T55JLT4:2:1249:31313:6591,LH00995:25:23T55JLT4:2:1253:22511:21864,LH00995:25:23T55JLT4:2:1256:1752:20631,LH00995:25:23T55JLT4:2:1259:35132:22845,LH00995:25:23T55JLT4:2:1259:35140:22831,LH00995:25:23T55JLT4:2:1264:30868:19440,LH00995:25:23T55JLT4:2:1272:27115:21290,LH00995:25:23T55JLT4:2:1273:44524:19020,LH00995:25:23T55JLT4:2:1277:34606:20701,LH00995:25:23T55JLT4:2:1278:33481:1294,LH00995:25:23T55JLT4:2:1295:11048:8707,LH00995:25:23T55JLT4:2:1307:38756:26993,LH00995:25:23T55JLT4:2:1308:18749:20253,LH00995:25:23T55JLT4:2:1308:18766:20253,LH00995:25:23T55JLT4:2:1308:43877:21682,LH00995:25:23T55JLT4:2:1321:50923:27749,LH00995:25:23T55JLT4:2:1326:5563:15208,LH00995:25:23T55JLT4:2:1334:1841:19216,LH00995:25:23T55JLT4:2:1343:23361:14508,LH00995:25:23T55JLT4:2:1353:2383:15839,LH00995:25:23T55JLT4:2:1357:37632:22523,LH00995:25:23T55JLT4:2:1367:42817:1855,LH00995:25:23T55JLT4:2:1370:42890:15853,LH00995:25:23T55JLT4:2:1371:4293:1995,LH00995:25:23T55JLT4:2:1377:13871:5358,LH00995:25:23T55JLT4:2:1382:48634:19272,LH00995:25:23T55JLT4:2:1392:29744:14718,LH00995:25:23T55JLT4:2:1396:47809:11789,LH00995:25:23T55JLT4:2:1397:25246:19090,LH00995:25:23T55JLT4:2:1413:41223:27539,LH00995:25:23T55JLT4:2:1414:26645:23532,LH00995:25:23T55JLT4:2:1421:27446:13737,LH00995:25:23T55JLT4:2:1425:50503:12896,LH00995:25:23T55JLT4:2:1426:7124:25227,LH00995:25:23T55JLT4:2:1429:47606:11832,LH00995:25:23T55JLT4:2:1431:43165:13387,LH00995:25:23T55JLT4:2:1433:35124:12742,LH00995:25:23T55JLT4:2:1433:43586:22551,LH00995:25:23T55JLT4:2:1434:43845:16806,LH00995:25:23T55JLT4:2:1440:22074:8777,LH00995:25:23T55JLT4:2:1441:39444:2962,LH00995:25:23T55JLT4:2:1442:49216:11537,LH00995:25:23T55JLT4:2:1442:49224:11551,LH00995:25:23T55JLT4:2:1444:25683:19594,LH00995:25:23T55JLT4:2:1451:14025:11593,LH00995:25:23T55JLT4:2:1465:49079:3704,LH00995:25:23T55JLT4:2:1470:24234:14676,LH00995:25:23T55JLT4:2:1471:49516:1518,LH00995:25:23T55JLT4:2:1479:10538:5806,LH00995:25:23T55JLT4:2:1479:10554:5806,LH00995:25:23T55JLT4:2:1481:47712:27707,LH00995:25:23T55JLT4:2:1484:30359:24611,LH00995:25:23T55JLT4:2:1490:47056:8160,LH00995:25:23T55JLT4:2:1491:18782:19356,LH00995:25:23T55JLT4:2:1491:42162:10640,LH00995:25:23T55JLT4:2:1496:4018:5050,LH00995:25:23T55JLT4:2:1498:14357:16568,LH00995:25:23T55JLT4:2:2101:19664:7039,LH00995:25:23T55JLT4:2:2111:17714:19328,LH00995:25:23T55JLT4:2:2120:23385:7600,LH00995:25:23T55JLT4:2:2126:23490:17535,LH00995:25:23T55JLT4:2:2132:30011:10024,LH00995:25:23T55JLT4:2:2135:30375:2948,LH00995:25:23T55JLT4:2:2144:35237:4195,LH00995:25:23T55JLT4:2:2144:45188:21654,LH00995:25:23T55JLT4:2:2148:24065:8749,LH00995:25:23T55JLT4:2:2155:17115:25634,LH00995:25:23T55JLT4:2:2164:24097:9449,LH00995:25:23T55JLT4:2:2166:29857:12896,LH00995:25:23T55JLT4:2:2167:30666:27525,LH00995:25:23T55JLT4:2:2171:13151:19636,LH00995:25:23T55JLT4:2:2176:27131:9828,LH00995:25:23T55JLT4:2:2179:19914:10444,LH00995:25:23T55JLT4:2:2183:22309:25606,LH00995:25:23T55JLT4:2:2183:4907:13905,LH00995:25:23T55JLT4:2:2184:23846:22775,LH00995:25:23T55JLT4:2:2187:42955:4391,LH00995:25:23T55JLT4:2:2191:24550:28478,LH00995:25:23T55JLT4:2:2192:42979:20855,LH00995:25:23T55JLT4:2:2194:1744:11257,LH00995:25:23T55JLT4:2:2195:40714:20939,LH00995:25:23T55JLT4:5:1101:19332:22663,LH00995:25:23T55JLT4:5:1101:33667:29557,LH00995:25:23T55JLT4:5:1112:14640:8370,LH00995:25:23T55JLT4:5:1119:46458:19118,LH00995:25:23T55JLT4:5:1119:46466:19104,LH00995:25:23T55JLT4:5:1120:34905:17072,LH00995:25:23T55JLT4:5:1126:45260:18782,LH00995:25:23T55JLT4:5:1127:22366:20071,LH00995:25:23T55JLT4:5:1128:42008:29095,LH00995:25:23T55JLT4:5:1138:49953:18557,LH00995:25:23T55JLT4:5:1140:31993:8300,LH00995:25:23T55JLT4:5:1145:18110:2976,LH00995:25:23T55JLT4:5:1145:18118:2990,LH00995:25:23T55JLT4:5:1145:18127:2976,LH00995:25:23T55JLT4:5:1152:23919:4181,LH00995:25:23T55JLT4:5:1152:26192:11313,LH00995:25:23T55JLT4:5:1155:40706:10500,LH00995:25:23T55JLT4:5:1164:27284:20968,LH00995:25:23T55JLT4:5:1168:42105:25844,LH00995:25:23T55JLT4:5:1172:6590:28562,LH00995:25:23T55JLT4:5:1178:33530:25423,LH00995:25:23T55JLT4:5:1205:45811:16007,LH00995:25:23T55JLT4:5:1205:7496:23406,LH00995:25:23T55JLT4:5:1212:13637:7193,LH00995:25:23T55JLT4:5:1225:22722:12700,LH00995:25:23T55JLT4:5:1226:26006:28198,LH00995:25:23T55JLT4:5:1234:2691:10795,LH00995:25:23T55JLT4:5:1235:48019:11733,LH00995:25:23T55JLT4:5:1253:4317:2990,LH00995:25:23T55JLT4:5:1262:46417:11481,LH00995:25:23T55JLT4:5:1270:35188:9183,LH00995:25:23T55JLT4:5:1276:2214:23083,LH00995:25:23T55JLT4:5:1286:47995:19959,LH00995:25:23T55JLT4:5:1289:12027:4153,LH00995:25:23T55JLT4:5:1289:12043:4153,LH00995:25:23T55JLT4:5:1296:14874:24274,LH00995:25:23T55JLT4:5:1296:25100:26432,LH00995:25:23T55JLT4:5:1314:25391:29039,LH00995:25:23T55JLT4:5:1320:16711:20589,LH00995:25:23T55JLT4:5:1320:36588:5022,LH00995:25:23T55JLT4:5:1324:14082:10038,LH00995:25:23T55JLT4:5:1328:14575:10220,LH00995:25:23T55JLT4:5:1330:28118:26502,LH00995:25:23T55JLT4:5:1339:29113:18585,LH00995:25:23T55JLT4:5:1356:21338:28548,LH00995:25:23T55JLT4:5:1365:38513:4601,LH00995:25:23T55JLT4:5:1372:3330:19244,LH00995:25:23T55JLT4:5:1374:4503:11523,LH00995:25:23T55JLT4:5:1382:2343:3634,LH00995:25:23T55JLT4:5:1382:2351:3648,LH00995:25:23T55JLT4:5:1394:2667:3830,LH00995:25:23T55JLT4:5:1404:11420:10837,LH00995:25:23T55JLT4:5:1406:13960:16694,LH00995:25:23T55JLT4:5:1416:5765:16315,LH00995:25:23T55JLT4:5:1420:44743:9618,LH00995:25:23T55JLT4:5:1424:27673:24723,LH00995:25:23T55JLT4:5:1425:11193:4475,LH00995:25:23T55JLT4:5:1425:30909:28198,LH00995:25:23T55JLT4:5:1425:51069:8637,LH00995:25:23T55JLT4:5:1427:4042:10472,LH00995:25:23T55JLT4:5:1427:4050:10486,LH00995:25:23T55JLT4:5:1430:45900:12658,LH00995:25:23T55JLT4:5:1439:3128:25087,LH00995:25:23T55JLT4:5:1439:39808:29571,LH00995:25:23T55JLT4:5:1447:9195:14942,LH00995:25:23T55JLT4:5:1452:34201:13387,LH00995:25:23T55JLT4:5:1458:44508:17675,LH00995:25:23T55JLT4:5:1460:18167:7249,LH00995:25:23T55JLT4:5:1467:25909:19202,LH00995:25:23T55JLT4:5:1473:11808:27231,LH00995:25:23T55JLT4:5:1483:29177:28590,LH00995:25:23T55JLT4:5:1485:18863:25241,LH00995:25:23T55JLT4:5:1485:6016:2569,LH00995:25:23T55JLT4:5:1494:46620:18249,LH00995:25:23T55JLT4:5:2101:16832:24779,LH00995:25:23T55JLT4:5:2107:26063:27651,LH00995:25:23T55JLT4:5:2111:49038:27035,LH00995:25:23T55JLT4:5:2113:19348:1701,LH00995:25:23T55JLT4:5:2114:15052:11803,LH00995:25:23T55JLT4:5:2117:19656:16498,LH00995:25:23T55JLT4:5:2128:6695:25578,LH00995:25:23T55JLT4:5:2137:25869:3158,LH00995:25:23T55JLT4:5:2146:42194:6857,LH00995:25:23T55JLT4:5:2153:30820:10893,LH00995:25:23T55JLT4:5:2153:38400:21164,LH00995:25:23T55JLT4:5:2156:1963:26628,LH00995:25:23T55JLT4:5:2156:22309:22131,LH00995:25:23T55JLT4:5:2164:18507:21794,LH00995:25:23T55JLT4:5:2166:3508:18571,LH00995:25:23T55JLT4:5:2175:8289:6563,LH00995:25:23T55JLT4:5:2176:11574:26825,LH00995:25:23T55JLT4:5:2185:43060:6983,LH00995:25:23T55JLT4:5:2196:31993:22845,LH00995:25:23T55JLT4:5:2206:6671:26404,LH00995:25:23T55JLT4:5:2211:21994:14886,LH00995:25:23T55JLT4:5:2211:31524:13037,LH00995:25:23T55JLT4:5:2214:30787:24120,LH00995:25:23T55JLT4:5:2215:4131:15475,LH00995:25:23T55JLT4:5:2215:48634:3606,LH00995:25:23T55JLT4:5:2217:50106:10556,LH00995:25:23T55JLT4:5:2231:6509:29627,LH00995:25:23T55JLT4:5:2239:5555:3704,LH00995:25:23T55JLT4:5:2241:1275:2037,LH00995:25:23T55JLT4:5:2241:5482:8455,LH00995:25:23T55JLT4:5:2243:50842:18221,LH00995:25:23T55JLT4:5:2246:39072:19720,LH00995:25:23T55JLT4:5:2251:20440:29571,LH00995:25:23T55JLT4:5:2259:9397:17030,LH00995:25:23T55JLT4:5:2270:1121:16680,LH00995:25:23T55JLT4:5:2277:2068:27315,LH00995:25:23T55JLT4:5:2280:29938:25956,LH00995:25:23T55JLT4:5:2284:1324:6913,LH00995:25:23T55JLT4:5:2284:7755:12196,LH00995:25:23T55JLT4:5:2289:35407:27862,LH00995:25:23T55JLT4:5:2289:6873:9884,LH00995:25:23T55JLT4:5:2290:43683:13947,LH00995:25:23T55JLT4:5:2293:30715:12700,LH00995:25:23T55JLT4:5:2332:18612:20603,LH00995:25:23T55JLT4:5:2332:45026:28296,LH00995:25:23T55JLT4:5:2334:35674:20841,LH00995:25:23T55JLT4:5:2342:43764:4447,LH00995:25:23T55JLT4:5:2342:9948:11397,LH00995:25:23T55JLT4:5:2343:32802:13765,LH00995:25:23T55JLT4:5:2347:21913:11972,LH00995:25:23T55JLT4:5:2357:16589:4657,LH00995:25:23T55JLT4:5:2357:40196:11775,LH00995:25:23T55JLT4:5:2358:9244:22649,LH00995:25:23T55JLT4:5:2359:33918:25564,LH00995:25:23T55JLT4:5:2361:3006:3494,LH00995:25:23T55JLT4:5:2370:8435:21892,LH00995:25:23T55JLT4:5:2385:21840:9351,LH00995:25:23T55JLT4:5:2389:21363:20183,LH00995:25:23T55JLT4:5:2393:37170:14886,LH00995:25:23T55JLT4:5:2394:24048:27189,LH00995:25:23T55JLT4:5:2394:26071:16708,LH00995:25:23T55JLT4:5:2395:23684:23616,LH00995:25:23T55JLT4:5:2396:34857:28534,LH00995:25:23T55JLT4:5:2401:10635:1266,LH00995:25:23T55JLT4:5:2402:40698:19286,LH00995:25:23T55JLT4:5:2403:42890:17675,LH00995:25:23T55JLT4:5:2405:27632:15096,LH00995:25:23T55JLT4:5:2409:36887:11537,LH00995:25:23T55JLT4:5:2413:39703:22887,LH00995:25:23T55JLT4:5:2418:20845:24611,LH00995:25:23T55JLT4:5:2418:22309:22719,LH00995:25:23T55JLT4:5:2422:21160:3158,LH00995:25:23T55JLT4:5:2438:21864:27441,LH00995:25:23T55JLT4:5:2442:35876:27665,LH00995:25:23T55JLT4:5:2447:11056:19538,LH00995:25:23T55JLT4:5:2459:37017:25017,LH00995:25:23T55JLT4:5:2463:5304:5204,LH00995:25:23T55JLT4:5:2463:6525:24751,LH00995:25:23T55JLT4:5:2465:7132:7614,LH00995:25:23T55JLT4:5:2468:29768:7025,LH00995:25:23T55JLT4:5:2468:44330:19328,LH00995:25:23T55JLT4:5:2475:25424:2079,LH00995:25:23T55JLT4:5:2476:20675:4615,LH00995:25:23T55JLT4:5:2490:51287:9323,LH00995:25:23T55JLT4:6:1101:16379:8861,LH00995:25:23T55JLT4:6:1103:4705:9211,LH00995:25:23T55JLT4:6:1104:14882:10388,LH00995:25:23T55JLT4:6:1105:31710:1589,LH00995:25:23T55JLT4:6:1110:38926:12966,LH00995:25:23T55JLT4:6:1113:25488:4097,LH00995:25:23T55JLT4:6:1114:47153:25199,LH00995:25:23T55JLT4:6:1114:50923:23238,LH00995:25:23T55JLT4:6:1115:28676:16091,LH00995:25:23T55JLT4:6:1115:28684:16077,LH00995:25:23T55JLT4:6:1119:20626:20309,LH00995:25:23T55JLT4:6:1138:2335:22145,LH00995:25:23T55JLT4:6:1140:22204:24443,LH00995:25:23T55JLT4:6:1149:7682:20281,LH00995:25:23T55JLT4:6:1152:22924:12966,LH00995:25:23T55JLT4:6:1152:5660:21570,LH00995:25:23T55JLT4:6:1154:1825:22103,LH00995:25:23T55JLT4:6:1155:16622:17549,LH00995:25:23T55JLT4:6:1157:20821:25073,LH00995:25:23T55JLT4:6:1160:8257:3060,LH00995:25:23T55JLT4:6:1161:9211:8132,LH00995:25:23T55JLT4:6:1163:49281:26642,LH00995:25:23T55JLT4:6:1164:14154:27904,LH00995:25:23T55JLT4:6:1164:14154:27932,LH00995:25:23T55JLT4:6:1164:14162:27918,LH00995:25:23T55JLT4:6:1164:14171:27932,LH00995:25:23T55JLT4:6:1175:34250:12882,LH00995:25:23T55JLT4:6:1176:12714:28660,LH00995:25:23T55JLT4:6:1185:23757:7628,LH00995:25:23T55JLT4:6:1186:19469:3648,LH00995:25:23T55JLT4:6:1250:48869:16540,LH00995:25:23T55JLT4:6:1289:46150:28394,LH00995:25:23T55JLT4:6:2301:27891:13807,LH00995:25:23T55JLT4:6:2306:21354:5484,LH00995:25:23T55JLT4:6:2326:7334:15082,LH00995:25:23T55JLT4:6:2394:2691:13961,LH00995:25:23T55JLT4:6:2404:41935:11201,LH00995:25:23T55JLT4:8:1215:4883:15433,LH00995:25:23T55JLT4:8:1279:11234:22733,LH00995:25:23T55JLT4:8:1286:17973:6044,LH00995:25:23T55JLT4:8:1357:33554:20141,LH00995:25:23T55JLT4:8:1421:36847:15419,LH00995:25:23T55JLT4:8:1456:30140:13919,LH00995:25:23T55JLT4:8:1474:6914:5694,LH00995:25:23T55JLT4:8:2449:32252:20603	in-frame	Tropomyosin(82%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(100%)	CDS/splice-site	CDS/splice-site	0	36	+/+	+/+	.	36	ENST00000646974	ENST00000392302	translocation	0.0	0.00325821341297855	0.001629106706489275																																						1173_HOB	Arriba
fp_audit	1173_JIG	fusion	JAK2--KDM1A	KDM1A--JAK2	JAK2--KDM1A	FP	FP		Arriba		dev_rna_exp0016	1173_JIG	altera_exact	1173	clinical	patient	skin	Skin				45	unknown			False	1173_JIG_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		17.50	38.00	59.07			AIH_Ext13_RNA	G04		False		dev_rna_exp0016_lib_s47	200.00		47.99	dev_rna_exp0016	G06		False		1173_JIG_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JIG_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr9	KDM1A	JAK2	23019947	5092585	chr1:23019947-chr9:5092585	+,+	Arriba	1	0	2		2	PASS	out-of-frame	KDM1A--JAK2	JAK2--KDM1A	confidence:medium	medium	translocation	CDS/splice-site	intron	85	62													2	0	False			FAIL		False	chr1:23019947	chr9:5092585	chr1:23019947-chr9:5092585	.	.	medium	85	62	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	.	TGTCGTGCCTGGGTCTGCGACCCCCATGGAAACTGGAATAGCAGAGACTCCGGAGGGGCGTCGGACCAGCCGGCGCAAGCGGGCGAAG|g|TAgAGTACCGTAAGGGAAAGATGAAA	KDM1A	JAK2	ENSG00000004487	ENSG00000096968	VVPGSATPMETGIAETPEGRRTSRRKRAK|veyrkgkm	LH00995:25:23T55JLT4:1:1138:21961:21024,LH00995:25:23T55JLT4:2:2326:49864:2205	out-of-frame	|Protein_kinase_domain(18%)	CDS/splice-site	intron	2	0	+/+	+/+	.	2	ENST00000356634	.	translocation	0.022988505747126436	0.0	0.011494252873563218																																						1173_JIG	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	4		4	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:medium;duplicates(1)	medium	inversion	CDS/splice-site	5'UTR/splice-site	861	1835	1.0	0.0	0.0	0.0									2	2	False	duplicates(1)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	medium	861	1835	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(1)	CTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	LSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:1:1442:50810:14298,LH00995:25:23T55JLT4:5:1158:7812:21906,LH00995:25:23T55JLT4:2:1452:13240:5582,LH00995:25:23T55JLT4:2:1452:13248:5568,LH00995:25:23T55JLT4:4:1343:19777:28170	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	2	2	+/+	-/-	.	4	ENST00000366541	ENST00000673466	inversion	0.002317497103128621	0.0010887316276537834	0.0017031143653912023																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243573048	chr1:243426558-chr1:243573048	+,-	Arriba	1	0	2		2	PASS		SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:medium	medium	inversion	CDS/splice-site	CDS/splice-site	861	30635													1	1				FAIL		False	chr1:243426558	chr1:243573048	chr1:243426558-chr1:243573048	.	.	medium	861	30635	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	.	ACTGCACCTCACCAG___ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	.	LH00995:25:23T55JLT4:6:2347:51846:9365,LH00995:25:23T55JLT4:6:1396:38894:8062	.	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	1	1	+/+	-/-	.	2	ENST00000435549	ENST00000336199	inversion	0.001160092807424594	3.264133698916308e-05	0.0005963670722068785																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243695716	chr1:243426558-chr1:243695716	+,-	Arriba	1	0	2		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(3),mismappers(1)	low	inversion	CDS/splice-site	CDS/splice-site	861	27873	3.0	0.0	1.0	0.0									0	2	False	duplicates(3),mismappers(1)		FAIL		False	chr1:243426558	chr1:243695716	chr1:243426558-chr1:243695716	.	.	low	861	27873	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(3),mismappers(1)	AGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA___AATGCCAGTTAATGAAAACAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|riykkleakilpfedrwlihri*	LH00995:25:23T55JLT4:2:2408:37826:25241,LH00995:25:23T55JLT4:1:1484:47914:1771,LH00995:25:23T55JLT4:2:1187:43400:10935,LH00995:25:23T55JLT4:2:2227:10878:28478,LH00995:25:23T55JLT4:6:1177:32049:4671,LH00995:25:23T55JLT4:6:1177:32058:4685	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000366541	ENST00000336199	inversion	0.0	7.174887892376682e-05	3.587443946188341e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243573048	chr1:243286397-chr1:243573048	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	952	30635	1.0	0.0	0.0	0.0									0	1	True	duplicates(1)		FAIL		False	chr1:243286397	chr1:243573048	chr1:243286397-chr1:243573048	.	.	low	952	30635	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GAACAAACACTTCTGGATGCATCC|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCaTGATCTCAAG___TTGGAGAATCTAATGCTGGAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EQTLLDAS|LFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYhDLKLENLML	LH00995:25:23T55JLT4:1:2130:13701:18880,LH00995:25:23T55JLT4:4:2453:51943:12812	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	3.264133698916308e-05	1.632066849458154e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243664883	chr1:243426558-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	861	47117													0	1	False			FAIL		False	chr1:243426558	chr1:243664883	chr1:243426558-chr1:243664883	.	.	low	861	47117	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	AGTGTGTCCAGCATGGGAGAGTAtATGAGACGATGAAGCAAAG|AATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	CVQHGRVyETMKQr|mpvnenrttkakhiynqmspvdycyreniscry	LH00995:25:23T55JLT4:7:1393:24251:3018	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	2.1223311685555414e-05	1.0611655842777707e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	1	1		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:medium;duplicates(1)	medium	inversion	CDS/splice-site	5'UTR/splice-site	773	2550	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	medium	773	2550	downstream	downstream	1	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	duplicates(1)	TGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAATCTCTCAAAAAACCAG___ATCTGAAATAGCTtAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIA*LSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:8:2233:13685:17591,LH00995:25:23T55JLT4:8:2233:13693:17577,LH00995:25:23T55JLT4:2:1354:20060:8427	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	+/+	-/-	.	2	ENST00000366541	ENST00000673466	inversion	0.001936733376371853	0.00019603999215840032	0.0010663866842651267																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243695716	chr1:243426558-chr1:243695716	+,-	Arriba	1	0	2		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	773	28108													0	2	False			FAIL		False	chr1:243426558	chr1:243695716	chr1:243426558-chr1:243695716	.	.	low	773	28108	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	.	GAGACGATGAAGCAAAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA___AATGCCAGTTAATGAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	ETMKQr|riykkleakilpfedrwlihri*	LH00995:25:23T55JLT4:3:2449:5312:19342,LH00995:25:23T55JLT4:6:1480:38441:19608	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000366541	ENST00000336199	inversion	0.0	7.114905727499111e-05	3.5574528637495556e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243664883	chr1:243256240-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	646	46469													1	0	True			FAIL		False	chr1:243256240	chr1:243664883	chr1:243256240-chr1:243664883	.	.	low	646	46469	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|AATGCCAGTTAATGAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AKSPENSTLEEILGQYQRSLR|eCQLMK	LH00995:25:23T55JLT4:1:2136:45058:23924	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0015455950540958269	0.0	0.0007727975270479134																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243415829	243695716	chr1:243415829-chr1:243695716	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	512	28108	1.0	0.0	0.0	0.0									0	1	True	duplicates(1)		FAIL		False	chr1:243415829	chr1:243695716	chr1:243415829-chr1:243695716	.	.	low	512	28108	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GATACAGCAAATGGAGGCCCAGCATGACAAAACTG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA___AATGCCAGTTAATG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	IQQMEAQHDKT|gEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQL	LH00995:25:23T55JLT4:1:2480:37874:3522,LH00995:25:23T55JLT4:6:1423:40528:29389	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(82%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	3.557579422960618e-05	1.778789711480309e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243418076	243573048	chr1:243418076-chr1:243573048	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	573	30530													1	0	False			FAIL		False	chr1:243418076	chr1:243573048	chr1:243418076-chr1:243573048	.	.	low	573	30530	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	AGGCCCAGCATGACAAAACTG___AAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAATCTCTCAAAAAACCAG|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTAT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AQHDKTENEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTs|cfsicresgcslrtahvs	LH00995:25:23T55JLT4:6:1153:34258:19426	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(87%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0017421602787456446	0.0	0.0008710801393728223																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	1	1		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:medium;duplicates(1)	medium	inversion	CDS/splice-site	5'UTR/splice-site	773	2550	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	medium	773	2550	downstream	downstream	1	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	duplicates(1)	TGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAATCTCTCAAAAAACCAG___ATCTGAAATAGCTtAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIA*LSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:8:2233:13685:17591,LH00995:25:23T55JLT4:8:2233:13693:17577,LH00995:25:23T55JLT4:2:1354:20060:8427	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	+/+	-/-	.	2	ENST00000366541	ENST00000673466	inversion	0.001936733376371853	0.00019603999215840032	0.0010663866842651267																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243695716	chr1:243426558-chr1:243695716	+,-	Arriba	1	0	2		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	773	28108													0	2	False			FAIL		False	chr1:243426558	chr1:243695716	chr1:243426558-chr1:243695716	.	.	low	773	28108	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	.	GAGACGATGAAGCAAAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA___AATGCCAGTTAATGAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	ETMKQr|riykkleakilpfedrwlihri*	LH00995:25:23T55JLT4:3:2449:5312:19342,LH00995:25:23T55JLT4:6:1480:38441:19608	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000366541	ENST00000336199	inversion	0.0	7.114905727499111e-05	3.5574528637495556e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243664883	chr1:243256240-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	646	46469													1	0	True			FAIL		False	chr1:243256240	chr1:243664883	chr1:243256240-chr1:243664883	.	.	low	646	46469	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|AATGCCAGTTAATGAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AKSPENSTLEEILGQYQRSLR|eCQLMK	LH00995:25:23T55JLT4:1:2136:45058:23924	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0015455950540958269	0.0	0.0007727975270479134																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243415829	243695716	chr1:243415829-chr1:243695716	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	512	28108	1.0	0.0	0.0	0.0									0	1	True	duplicates(1)		FAIL		False	chr1:243415829	chr1:243695716	chr1:243415829-chr1:243695716	.	.	low	512	28108	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GATACAGCAAATGGAGGCCCAGCATGACAAAACTG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA___AATGCCAGTTAATG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	IQQMEAQHDKT|gEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQL	LH00995:25:23T55JLT4:1:2480:37874:3522,LH00995:25:23T55JLT4:6:1423:40528:29389	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(82%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	3.557579422960618e-05	1.778789711480309e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243418076	243573048	chr1:243418076-chr1:243573048	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	573	30530													1	0	False			FAIL		False	chr1:243418076	chr1:243573048	chr1:243418076-chr1:243573048	.	.	low	573	30530	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	AGGCCCAGCATGACAAAACTG___AAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAATCTCTCAAAAAACCAG|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTAT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AQHDKTENEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTs|cfsicresgcslrtahvs	LH00995:25:23T55JLT4:6:1153:34258:19426	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(87%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0017421602787456446	0.0	0.0008710801393728223																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	4		4	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:medium;duplicates(1)	medium	inversion	CDS/splice-site	5'UTR/splice-site	861	1835	1.0	0.0	0.0	0.0									2	2	False	duplicates(1)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	medium	861	1835	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(1)	CTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	LSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:1:1442:50810:14298,LH00995:25:23T55JLT4:5:1158:7812:21906,LH00995:25:23T55JLT4:2:1452:13240:5582,LH00995:25:23T55JLT4:2:1452:13248:5568,LH00995:25:23T55JLT4:4:1343:19777:28170	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	2	2	+/+	-/-	.	4	ENST00000366541	ENST00000673466	inversion	0.002317497103128621	0.0010887316276537834	0.0017031143653912023																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243573048	chr1:243426558-chr1:243573048	+,-	Arriba	1	0	2		2	PASS		SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:medium	medium	inversion	CDS/splice-site	CDS/splice-site	861	30635													1	1				FAIL		False	chr1:243426558	chr1:243573048	chr1:243426558-chr1:243573048	.	.	medium	861	30635	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	.	ACTGCACCTCACCAG___ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATT	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	.	LH00995:25:23T55JLT4:6:2347:51846:9365,LH00995:25:23T55JLT4:6:1396:38894:8062	.	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	1	1	+/+	-/-	.	2	ENST00000435549	ENST00000336199	inversion	0.001160092807424594	3.264133698916308e-05	0.0005963670722068785																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243695716	chr1:243426558-chr1:243695716	+,-	Arriba	1	0	2		2	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(3),mismappers(1)	low	inversion	CDS/splice-site	CDS/splice-site	861	27873	3.0	0.0	1.0	0.0									0	2	False	duplicates(3),mismappers(1)		FAIL		False	chr1:243426558	chr1:243695716	chr1:243426558-chr1:243695716	.	.	low	861	27873	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(3),mismappers(1)	AGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA___AATGCCAGTTAATGAAAACAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|riykkleakilpfedrwlihri*	LH00995:25:23T55JLT4:2:2408:37826:25241,LH00995:25:23T55JLT4:1:1484:47914:1771,LH00995:25:23T55JLT4:2:1187:43400:10935,LH00995:25:23T55JLT4:2:2227:10878:28478,LH00995:25:23T55JLT4:6:1177:32049:4671,LH00995:25:23T55JLT4:6:1177:32058:4685	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000366541	ENST00000336199	inversion	0.0	7.174887892376682e-05	3.587443946188341e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243573048	chr1:243286397-chr1:243573048	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	952	30635	1.0	0.0	0.0	0.0									0	1	True	duplicates(1)		FAIL		False	chr1:243286397	chr1:243573048	chr1:243286397-chr1:243573048	.	.	low	952	30635	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GAACAAACACTTCTGGATGCATCC|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCaTGATCTCAAG___TTGGAGAATCTAATGCTGGAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EQTLLDAS|LFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYhDLKLENLML	LH00995:25:23T55JLT4:1:2130:13701:18880,LH00995:25:23T55JLT4:4:2453:51943:12812	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	3.264133698916308e-05	1.632066849458154e-05																																						1173_JXL	Arriba
fp_audit	1173_JXL	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_JXL	altera_exact	1173	clinical	patient	skin	Skin				44	unknown			False	1173_JXL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		89.30	38.00	73.57			AIH_Ext13_RNA	G01		False		dev_rna_exp0016_lib_s23	200.00		71.35	dev_rna_exp0016	G03		False		1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243664883	chr1:243426558-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	861	47117													0	1	False			FAIL		False	chr1:243426558	chr1:243664883	chr1:243426558-chr1:243664883	.	.	low	861	47117	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	AGTGTGTCCAGCATGGGAGAGTAtATGAGACGATGAAGCAAAG|AATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	CVQHGRVyETMKQr|mpvnenrttkakhiynqmspvdycyreniscry	LH00995:25:23T55JLT4:7:1393:24251:3018	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	2.1223311685555414e-05	1.0611655842777707e-05																																						1173_JXL	Arriba
fp_audit	1173_KQG	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_KQG	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				44	unknown			False	1173_KQG_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.60	35.00	51.57			AIH_Ext12_RNA	G01		False		dev_rna_exp0016_lib_s66	100.00		99.64	dev_rna_exp0016	B09		False		1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	5'UTR/splice-site	656	2152	1.0	0.0	0.0	0.0									0	1	False	duplicates(1)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	656	2152	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGT-ATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGGG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:3:1365:46959:22285,LH00995:25:23T55JLT4:3:2393:35690:17506	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.00046446818392940084	0.00023223409196470042																																						1173_KQG	Arriba
fp_audit	1173_KQG	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_KQG	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				44	unknown			False	1173_KQG_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.60	35.00	51.57			AIH_Ext12_RNA	G01		False		dev_rna_exp0016_lib_s66	100.00		99.64	dev_rna_exp0016	B09		False		1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243664883	chr1:243426558-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	656	18906													1	0	False			FAIL		False	chr1:243426558	chr1:243664883	chr1:243426558-chr1:243664883	.	.	low	656	18906	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	TCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|AATGCCAGTTAATGAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	SEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|mpvne	LH00995:25:23T55JLT4:1:1368:20335:5988	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0015220700152207	0.0	0.00076103500761035																																						1173_KQG	Arriba
fp_audit	1173_KQG	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_KQG	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				44	unknown			False	1173_KQG_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.60	35.00	51.57			AIH_Ext12_RNA	G01		False		dev_rna_exp0016_lib_s66	100.00		99.64	dev_rna_exp0016	B09		False		1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	5'UTR/splice-site	656	2152	1.0	0.0	0.0	0.0									0	1	False	duplicates(1)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	656	2152	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGT-ATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGGG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:3:1365:46959:22285,LH00995:25:23T55JLT4:3:2393:35690:17506	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.00046446818392940084	0.00023223409196470042																																						1173_KQG	Arriba
fp_audit	1173_KQG	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_KQG	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				44	unknown			False	1173_KQG_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.60	35.00	51.57			AIH_Ext12_RNA	G01		False		dev_rna_exp0016_lib_s66	100.00		99.64	dev_rna_exp0016	B09		False		1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243664883	chr1:243426558-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	656	18906													1	0	False			FAIL		False	chr1:243426558	chr1:243664883	chr1:243426558-chr1:243664883	.	.	low	656	18906	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	TCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|AATGCCAGTTAATGAAAAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	SEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|mpvne	LH00995:25:23T55JLT4:1:1368:20335:5988	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0015220700152207	0.0	0.00076103500761035																																						1173_KQG	Arriba
fp_audit	1173_KQG	fusion	JAK2--KDM1A	KDM1A--JAK2	JAK2--KDM1A	FP	FP		Arriba		dev_rna_exp0016	1173_KQG	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				44	unknown			False	1173_KQG_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.60	35.00	51.57			AIH_Ext12_RNA	G01		False		dev_rna_exp0016_lib_s66	100.00		99.64	dev_rna_exp0016	B09		False		1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_KQG_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr9	KDM1A	JAK2	23019947	5092585	chr1:23019947-chr9:5092585	+,+	Arriba	1	0	3		3	PASS	out-of-frame	KDM1A--JAK2	JAK2--KDM1A	confidence:medium	medium	translocation	CDS/splice-site	intron	477	0													3	0	False			FAIL		False	chr1:23019947	chr9:5092585	chr1:23019947-chr9:5092585	.	.	medium	477	0	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	CGCCCCCCGGGGGCCTGGCGGAACCGCCGGGGTCCGCAGGGCCTCAGGCCGGCCCTACTGTCGTGCCTGGGTCTGCGACCCCCATGGAAACTGGAATAGCAGAGACTCCGGAGGGGCGTCGGACCAGCCGGCGCAAGCGGGCGAAG|g|TAgAGTACCGTAAGGGAAAGATGAAAG	KDM1A	JAK2	ENSG00000004487	ENSG00000096968	PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAK|veyrkgkmk	LH00995:25:23T55JLT4:6:1265:38068:18684,LH00995:25:23T55JLT4:6:2455:37114:18936,LH00995:25:23T55JLT4:8:2163:16136:5246	out-of-frame	|Protein_kinase_domain(18%)	CDS/splice-site	intron	3	0	+/+	+/+	.	3	ENST00000356634	.	translocation	0.00625																																								1173_KQG	Arriba
fp_audit	1173_KQG	fusion	JAK2--KDM1A	KDM1A--JAK2	JAK2--KDM1A	FP	FP		Arriba		dev_rna_exp0016	1173_KQG	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				44	unknown			False	1173_KQG_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.60	35.00	51.57			AIH_Ext12_RNA	G01		False		dev_rna_exp0016_lib_s66	100.00		99.64	dev_rna_exp0016	B09		False		1173_KQG_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_KQG_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr9	KDM1A	JAK2	23019947	5092585	chr1:23019947-chr9:5092585	+,+	Arriba	1	0	3		3	PASS	out-of-frame	KDM1A--JAK2	JAK2--KDM1A	confidence:medium	medium	translocation	CDS/splice-site	intron	477	0													3	0	False			FAIL		False	chr1:23019947	chr9:5092585	chr1:23019947-chr9:5092585	.	.	medium	477	0	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	CGCCCCCCGGGGGCCTGGCGGAACCGCCGGGGTCCGCAGGGCCTCAGGCCGGCCCTACTGTCGTGCCTGGGTCTGCGACCCCCATGGAAACTGGAATAGCAGAGACTCCGGAGGGGCGTCGGACCAGCCGGCGCAAGCGGGCGAAG|g|TAgAGTACCGTAAGGGAAAGATGAAAG	KDM1A	JAK2	ENSG00000004487	ENSG00000096968	PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAK|veyrkgkmk	LH00995:25:23T55JLT4:6:1265:38068:18684,LH00995:25:23T55JLT4:6:2455:37114:18936,LH00995:25:23T55JLT4:8:2163:16136:5246	out-of-frame	|Protein_kinase_domain(18%)	CDS/splice-site	intron	3	0	+/+	+/+	.	3	ENST00000356634	.	translocation	0.00625																																								1173_KQG	Arriba
fp_audit	1173_LAF	fusion	DYRK1A--ERG	DYRK1A--ERG	DYRK1A--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_LAF	altera_exact	1173	clinical	patient	lung	Lung				46	unknown			False	1173_LAF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		24.10	38.00	27.34			AIH_Ext13_RNA	A03		False		dev_rna_exp0016_lib_s33	200.00		36.67	dev_rna_exp0016	A05		False		1173_LAF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_LAF_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	DYRK1A	ERG	37420384	38445621	chr21:37420384-chr21:38445621	+,-	Arriba	1	0	1		1	PASS	out-of-frame	DYRK1A--ERG	DYRK1A--ERG	confidence:low;duplicates(4)	low	inversion	CDS/splice-site	CDS/splice-site	775	574	4.0	0.0	0.0	0.0									0	1	False	duplicates(4)		FAIL		False	chr21:37420384	chr21:38445621	chr21:37420384-chr21:38445621	.	.	low	775	574	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(4)	CTTGAAAGAAGACGATGCATACAG|GAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCC	DYRK1A	ERG	ENSG00000157540	ENSG00000157554	MHT|gslisce*	LH00995:25:23T55JLT4:1:1172:37526:14073,LH00995:25:23T55JLT4:1:1287:26945:15110,LH00995:25:23T55JLT4:3:1206:43537:11313,LH00995:25:23T55JLT4:5:2498:18685:27063,LH00995:25:23T55JLT4:7:1268:25124:3466	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000647188	ENST00000442448	inversion	0.0	0.0017391304347826088	0.0008695652173913044																																						1173_LAF	Arriba
fp_audit	1173_LAF	fusion	DYRK1A--ERG	DYRK1A--ERG	DYRK1A--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_LAF	altera_exact	1173	clinical	patient	lung	Lung				46	unknown			False	1173_LAF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		24.10	38.00	27.34			AIH_Ext13_RNA	A03		False		dev_rna_exp0016_lib_s33	200.00		36.67	dev_rna_exp0016	A05		False		1173_LAF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_LAF_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	DYRK1A	ERG	37420384	38445621	chr21:37420384-chr21:38445621	+,-	STAR-Fusion	1	0	1	0.0125	1	FAIL	out-of-frame	DYRK1A--ERG	DYRK1A--ERG	"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"											ONLY_REF_SPLICE	NO_LDAS	1.8892	False	False	False	GT	AG	1		False	Read count too low: 1 < 8																																									0	ENST00000398956.2	1-10	ENST00000417133.6	40-1461	0.0125	FAIL	atgcatacagGAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCCTACGGAACGCCACACCTGGCTAAGACAGAGATGACCGCGTCCTCCTCCAGCGACTATGGACAGACTTCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCCAGGGTCACCATCAAAATGGAATGTAACCCTAGCCAGGTGAATGGCTCAAGGAACTCTCCTGATGAATGCAGTGTGGCCAAAGGCGGGAAGATGGTGGGCAGCCCAGACACCGTTGGGATGAACTACGGCAGCTACATGGAGGAGAAGCACATGCCACCCCCAAACATGACCACGAACGAGCGCAGAGTTATCGTGCCAGCAGATCCTACGCTATGGAGTACAGACCATGTGCGGCAGTGGCTGGAGTGGGCGGTGAAAGAATATGGCCTTCCAGACGTCAACATCTTGTTATTCCAGAACATCGATGGGAAGGAACTGTGCAAGATGACCAAGGACGACTTCCAGAGGCTCACCCCCAGCTACAACGCCGACATCCTTCTCTCACATCTCCACTACCTCAGAGAGACTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAGGGGGTGCAGCTTTTATTTTCCCAAATACTTCAGTATATCCTGAAGCTACGCAAAGAATTACAACTAGGCCAGATTTACCATATGAGCCCCCCAGGAGATCAGCCTGGACCGGTCACGGCCACCCCACGCCCCAGTCGAAAGCTGCTCAACCATCTCCTTCCACAGTGCCCAAAACTGAAGACCAGCGTCCTCAGTTAGATCCTTATCAGATTCTTGGACCAACAAGTAGCCGCCTTGCAAATCCAGGCAGTGGCCAGATCCAGCTTTGGCAGTTCCTCCTGGAGCTCCTGTCGGACAGCTCCAACTCCAGCTGCATCACCTGGGAAGGCACCAACGGGGAGTTCAAGATGACGGATCCCGACGAGGTGGCCCGGCGCTGGGGAGAGCGGAAGAGCAAACCCAACATGAACTACGATAAGCTCAGCCGCGCCCTCCGTTACTACTATGACAAGAACATCATGACCAAGGTCCATGGGAAGCGCTACGCCTACAAGTTCGACTTCCACGGGATCGCCCAGGCCCTCCAGCCCCACCCCCCGGAGTCATCTCTGTACAAGTACCCCTCAGACCTCCCGTACATGGGCTCCTATCACGCCCACCCACAGAAGATGAACTTTGTGGCGCCCCACCCTCCAGCCCTCCCCGTGACATCTTCCAGTTTTTTTGCTGCCCCAAACCCATACTGGAATTCACCAACTGGGGGTATATACCCCAACACTAGGCTCCCCACCAGCCATATGCCTTCTCATCTGGGCACTTACTACTAA	chr21|+|[0]37420375-37420384[0]<==>chr21|-|[2]38383403-38383923[1]|[0]38390995-38391042[1]|[0]38391659-38391715[1]|[0]38392376-38392444[1]|[0]38400574-38400645[1]|[0]38402557-38402637[1]|[0]38403506-38403709[1]|[0]38423410-38423561[2]|[1]38445404-38445621[0]	MHTGSLISCE*GPVVV*VCLRNATPG*DRDDRVLLQRLWTDFQDEPTRPSAGLAVSTPSQGHHQNGM*P*PGEWLKELS**MQCGQRREDGGQPRHRWDELRQLHGGEAHATPKHDHERAQSYRASRSYAMEYRPCAAVAGVGGERIWPSRRQHLVIPEHRWEGTVQDDQGRLPEAHPQLQRRHPSLTSPLPQRDSSSTFDFR*C**SLTKLSTVNAC*KHRGCSFYFPKYFSIS*SYAKNYN*ARFTI*APQEISLDRSRPPHAPVESCSTISFHSAQN*RPASSVRSLSDSWTNK*PPCKSRQWPDPALAVPPGAPVGQLQLQLHHLGRHQRGVQDDGSRRGGPALGRAEEQTQHELR*AQPRPPLLL*QEHHDQGPWEALRLQVRLPRDRPGPPAPPPGVISVQVPLRPPVHGLLSRPPTEDELCGAPPSSPPRDIFQFFCCPKPILEFTNWGYIPQH*APHQPYAFSSGHLLL	DYRK1A--ERG	1	LH00995:25:23T55JLT4:1:1172:37526:14073	NO_LDAS	GT	1.8892	chr21:37420384:+	DYRK1A^ENSG00000157540.22	.	SAM_PNT|123-204|1.4e-29^Arb2|138-171|4e-05^SAM_1|141-186|4e-05^SAM_3|143-200|1.3e-05^Ets|319-397|1.2e-38	FRAMESHIFT	AG	1.9656	chr21:38445621:-	ERG^ENSG00000157554.19	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"		False	chr21:37420384-chr21:38445621	1.0	0.0	Read count too low: 1 < 8	1	1173_LAF	STAR-Fusion
fp_audit	1173_LAF	fusion	DYRK1A--ERG	DYRK1A--ERG	DYRK1A--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_LAF	altera_exact	1173	clinical	patient	lung	Lung				46	unknown			False	1173_LAF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		24.10	38.00	27.34			AIH_Ext13_RNA	A03		False		dev_rna_exp0016_lib_s33	200.00		36.67	dev_rna_exp0016	A05		False		1173_LAF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_LAF_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	DYRK1A	ERG	37366943	38445621	chr21:37366943-chr21:38445621	+,-	STAR-Fusion	1	0	1	0.0125	1	FAIL		DYRK1A--ERG	DYRK1A--ERG	"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"											INCL_NON_REF_SPLICE	YES_LDAS	1.8323	False	False	False	GT	AG	1			Read count too low: 1 < 8																																									0	.	.	.	.	0.0125	FAIL	.	.	.	DYRK1A--ERG	1	LH00995:25:23T55JLT4:1:2197:16055:5218	YES_LDAS	GT	1.8323	chr21:37366943:+	DYRK1A^ENSG00000157540.22	.	.	.	AG	1.9656	chr21:38445621:-	ERG^ENSG00000157554.19	0	.	INCL_NON_REF_SPLICE		"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"		False	chr21:37366943-chr21:38445621	1.0	0.0	Read count too low: 1 < 8	1	1173_LAF	STAR-Fusion
fp_audit	1173_LAF	fusion	DYRK1A--ERG	DYRK1A--ERG	DYRK1A--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_LAF	altera_exact	1173	clinical	patient	lung	Lung				46	unknown			False	1173_LAF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		24.10	38.00	27.34			AIH_Ext13_RNA	A03		False		dev_rna_exp0016_lib_s33	200.00		36.67	dev_rna_exp0016	A05		False		1173_LAF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_LAF_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	DYRK1A	ERG	37420384	38445621	chr21:37420384-chr21:38445621	+,-	Arriba	1	0	1		1	PASS	out-of-frame	DYRK1A--ERG	DYRK1A--ERG	confidence:low;duplicates(4)	low	inversion	CDS/splice-site	CDS/splice-site	775	574	4.0	0.0	0.0	0.0									0	1	False	duplicates(4)		FAIL		False	chr21:37420384	chr21:38445621	chr21:37420384-chr21:38445621	.	.	low	775	574	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(4)	CTTGAAAGAAGACGATGCATACAG|GAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCC	DYRK1A	ERG	ENSG00000157540	ENSG00000157554	MHT|gslisce*	LH00995:25:23T55JLT4:1:1172:37526:14073,LH00995:25:23T55JLT4:1:1287:26945:15110,LH00995:25:23T55JLT4:3:1206:43537:11313,LH00995:25:23T55JLT4:5:2498:18685:27063,LH00995:25:23T55JLT4:7:1268:25124:3466	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000647188	ENST00000442448	inversion	0.0	0.0017391304347826088	0.0008695652173913044																																						1173_LAF	Arriba
fp_audit	1173_LAF	fusion	DYRK1A--ERG	DYRK1A--ERG	DYRK1A--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_LAF	altera_exact	1173	clinical	patient	lung	Lung				46	unknown			False	1173_LAF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		24.10	38.00	27.34			AIH_Ext13_RNA	A03		False		dev_rna_exp0016_lib_s33	200.00		36.67	dev_rna_exp0016	A05		False		1173_LAF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_LAF_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	DYRK1A	ERG	37420384	38445621	chr21:37420384-chr21:38445621	+,-	STAR-Fusion	1	0	1	0.0125	1	FAIL	out-of-frame	DYRK1A--ERG	DYRK1A--ERG	"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"											ONLY_REF_SPLICE	NO_LDAS	1.8892	False	False	False	GT	AG	1		False	Read count too low: 1 < 8																																									0	ENST00000398956.2	1-10	ENST00000417133.6	40-1461	0.0125	FAIL	atgcatacagGAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCCTACGGAACGCCACACCTGGCTAAGACAGAGATGACCGCGTCCTCCTCCAGCGACTATGGACAGACTTCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCCAGGGTCACCATCAAAATGGAATGTAACCCTAGCCAGGTGAATGGCTCAAGGAACTCTCCTGATGAATGCAGTGTGGCCAAAGGCGGGAAGATGGTGGGCAGCCCAGACACCGTTGGGATGAACTACGGCAGCTACATGGAGGAGAAGCACATGCCACCCCCAAACATGACCACGAACGAGCGCAGAGTTATCGTGCCAGCAGATCCTACGCTATGGAGTACAGACCATGTGCGGCAGTGGCTGGAGTGGGCGGTGAAAGAATATGGCCTTCCAGACGTCAACATCTTGTTATTCCAGAACATCGATGGGAAGGAACTGTGCAAGATGACCAAGGACGACTTCCAGAGGCTCACCCCCAGCTACAACGCCGACATCCTTCTCTCACATCTCCACTACCTCAGAGAGACTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAGGGGGTGCAGCTTTTATTTTCCCAAATACTTCAGTATATCCTGAAGCTACGCAAAGAATTACAACTAGGCCAGATTTACCATATGAGCCCCCCAGGAGATCAGCCTGGACCGGTCACGGCCACCCCACGCCCCAGTCGAAAGCTGCTCAACCATCTCCTTCCACAGTGCCCAAAACTGAAGACCAGCGTCCTCAGTTAGATCCTTATCAGATTCTTGGACCAACAAGTAGCCGCCTTGCAAATCCAGGCAGTGGCCAGATCCAGCTTTGGCAGTTCCTCCTGGAGCTCCTGTCGGACAGCTCCAACTCCAGCTGCATCACCTGGGAAGGCACCAACGGGGAGTTCAAGATGACGGATCCCGACGAGGTGGCCCGGCGCTGGGGAGAGCGGAAGAGCAAACCCAACATGAACTACGATAAGCTCAGCCGCGCCCTCCGTTACTACTATGACAAGAACATCATGACCAAGGTCCATGGGAAGCGCTACGCCTACAAGTTCGACTTCCACGGGATCGCCCAGGCCCTCCAGCCCCACCCCCCGGAGTCATCTCTGTACAAGTACCCCTCAGACCTCCCGTACATGGGCTCCTATCACGCCCACCCACAGAAGATGAACTTTGTGGCGCCCCACCCTCCAGCCCTCCCCGTGACATCTTCCAGTTTTTTTGCTGCCCCAAACCCATACTGGAATTCACCAACTGGGGGTATATACCCCAACACTAGGCTCCCCACCAGCCATATGCCTTCTCATCTGGGCACTTACTACTAA	chr21|+|[0]37420375-37420384[0]<==>chr21|-|[2]38383403-38383923[1]|[0]38390995-38391042[1]|[0]38391659-38391715[1]|[0]38392376-38392444[1]|[0]38400574-38400645[1]|[0]38402557-38402637[1]|[0]38403506-38403709[1]|[0]38423410-38423561[2]|[1]38445404-38445621[0]	MHTGSLISCE*GPVVV*VCLRNATPG*DRDDRVLLQRLWTDFQDEPTRPSAGLAVSTPSQGHHQNGM*P*PGEWLKELS**MQCGQRREDGGQPRHRWDELRQLHGGEAHATPKHDHERAQSYRASRSYAMEYRPCAAVAGVGGERIWPSRRQHLVIPEHRWEGTVQDDQGRLPEAHPQLQRRHPSLTSPLPQRDSSSTFDFR*C**SLTKLSTVNAC*KHRGCSFYFPKYFSIS*SYAKNYN*ARFTI*APQEISLDRSRPPHAPVESCSTISFHSAQN*RPASSVRSLSDSWTNK*PPCKSRQWPDPALAVPPGAPVGQLQLQLHHLGRHQRGVQDDGSRRGGPALGRAEEQTQHELR*AQPRPPLLL*QEHHDQGPWEALRLQVRLPRDRPGPPAPPPGVISVQVPLRPPVHGLLSRPPTEDELCGAPPSSPPRDIFQFFCCPKPILEFTNWGYIPQH*APHQPYAFSSGHLLL	DYRK1A--ERG	1	LH00995:25:23T55JLT4:1:1172:37526:14073	NO_LDAS	GT	1.8892	chr21:37420384:+	DYRK1A^ENSG00000157540.22	.	SAM_PNT|123-204|1.4e-29^Arb2|138-171|4e-05^SAM_1|141-186|4e-05^SAM_3|143-200|1.3e-05^Ets|319-397|1.2e-38	FRAMESHIFT	AG	1.9656	chr21:38445621:-	ERG^ENSG00000157554.19	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"		False	chr21:37420384-chr21:38445621	1.0	0.0	Read count too low: 1 < 8	1	1173_LAF	STAR-Fusion
fp_audit	1173_LAF	fusion	DYRK1A--ERG	DYRK1A--ERG	DYRK1A--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_LAF	altera_exact	1173	clinical	patient	lung	Lung				46	unknown			False	1173_LAF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		24.10	38.00	27.34			AIH_Ext13_RNA	A03		False		dev_rna_exp0016_lib_s33	200.00		36.67	dev_rna_exp0016	A05		False		1173_LAF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_LAF_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	DYRK1A	ERG	37366943	38445621	chr21:37366943-chr21:38445621	+,-	STAR-Fusion	1	0	1	0.0125	1	FAIL		DYRK1A--ERG	DYRK1A--ERG	"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"											INCL_NON_REF_SPLICE	YES_LDAS	1.8323	False	False	False	GT	AG	1			Read count too low: 1 < 8																																									0	.	.	.	.	0.0125	FAIL	.	.	.	DYRK1A--ERG	1	LH00995:25:23T55JLT4:1:2197:16055:5218	YES_LDAS	GT	1.8323	chr21:37366943:+	DYRK1A^ENSG00000157540.22	.	.	.	AG	1.9656	chr21:38445621:-	ERG^ENSG00000157554.19	0	.	INCL_NON_REF_SPLICE		"[""INTRACHROMOSOMAL[chr21:0.85Mb]""]"		False	chr21:37366943-chr21:38445621	1.0	0.0	Read count too low: 1 < 8	1	1173_LAF	STAR-Fusion
fp_audit	1173_LQD	fusion	PAX3--RPL23AP28	PAX3--RPL23AP28	PAX3--RPL23AP28	FP	FP		Arriba		dev_rna_exp0016	1173_LQD	altera_exact	1173	clinical	patient	skin	Skin				62	unknown			False	1173_LQD_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		69.30	38.00	53.65			AIH_Ext13_RNA	D05		False		dev_rna_exp0016_lib_s52	200.00		82.54	dev_rna_exp0016	D07		False		1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_LQD_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr2	chr2	PAX3	RPL23AP28	222220140	222116882	chr2:222220140-chr2:222116882	-,-	Arriba	1	0	5		5	PASS	out-of-frame	PAX3--RPL23AP28	PAX3--RPL23AP28	confidence:low;duplicates(7)	low	deletion/read-through	CDS/splice-site	intergenic	5608	12	7.0	0.0	0.0	0.0									4	1	False	duplicates(7)		FAIL		False	chr2:222220140	chr2:222116882	chr2:222220140-chr2:222116882	.	.	low	5608	12	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(5.0<8.0)	duplicates(7)	TCTGCCTACTGCCTCCCCAGCACCAGGCATGGATTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCGGGGCCCTCCAACCCCATGAACCCCACCATTGGCAATGGCCTCTCACCTCAG|ATGATGAACTGAGACCAAGAAAAGACCCACTAAAGATCAAAAATTG___CAGAGAACAATATTTCAAGAGGTACGTCTTGGACATAAAC	PAX3	RPL23AP28(71888),PAX3(83005)	ENSG00000135903	.	SAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ|mmn*	LH00995:25:23T55JLT4:3:2391:43100:9660,LH00995:25:23T55JLT4:2:1265:27220:8721,LH00995:25:23T55JLT4:2:2437:17318:19847,LH00995:25:23T55JLT4:3:1117:24963:19636,LH00995:25:23T55JLT4:3:2414:17415:11747,LH00995:25:23T55JLT4:5:1320:37737:15699,LH00995:25:23T55JLT4:5:1386:38966:26236,LH00995:25:23T55JLT4:5:1426:41806:11986,LH00995:25:23T55JLT4:6:1205:39848:3718,LH00995:25:23T55JLT4:6:1369:33247:20869,LH00995:25:23T55JLT4:8:2376:25084:9477,LH00995:25:23T55JLT4:8:2423:29202:17254	out-of-frame	'Paired_box'_domain(100%),Homeodomain(100%),Paired_box_protein_7_(100%)|	CDS/splice-site	intergenic	4	1	-/-	./-	.	5	ENST00000392070	.	deletion/read-through	0.0007127583749109052	0.07692307692307693	0.038817917648993915																																						1173_LQD	Arriba
fp_audit	1173_M4Y	fusion	ERBB2--NEUROD2	ERBB2--NEUROD2	ERBB2--NEUROD2	FP	FP		Arriba		dev_rna_exp0016	1173_M4Y	altera_exact	1173	clinical	patient	esophageal	Esophageal				63	unknown			False	1173_M4Y_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		25.30	38.00	30.69			AIH_Ext13_RNA	F04		False		dev_rna_exp0016_lib_s46	200.00		13.52	dev_rna_exp0016	F06		False		1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	NEUROD2	39715520	39618997	chr17:39715520-chr17:39618997	+,-	Arriba	1	0	135		135	PASS	out-of-frame	ERBB2--NEUROD2	ERBB2--NEUROD2	confidence:medium;duplicates(452),mismatches(9)	medium	inversion	CDS	intergenic	65535	272	452.0	9.0	0.0	0.0									115	20	False	duplicates(452),mismatches(9)		FAIL		False	chr17:39715520	chr17:39618997	chr17:39715520-chr17:39618997	.	.	medium	65535	272	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(452),mismatches(9)	CTCACCCTCTGCCTGCAGGTTACCTATACATCTCAGCATGGCCGGACAGCCTGCCTGACCTCAGCGTCTTCCAGAACCTGCAAGTAATCCGGG|AAGAGGGGTGGGAGCTAAGATTTGCCTGTCCTGTGCCTCAGTTTACTCc	ERBB2	NEUROD2(9220),AC087491.1(616)	ENSG00000141736	.	hplpaGYLYISAWPDSLPDLSVFQNLQVIR|eegwelrfacpvpqft	LH00995:25:23T55JLT4:1:1105:44023:27399,LH00995:25:23T55JLT4:1:1107:13540:28324,LH00995:25:23T55JLT4:1:1146:8087:2289,LH00995:25:23T55JLT4:1:1161:21977:23209,LH00995:25:23T55JLT4:1:1213:32672:7460,LH00995:25:23T55JLT4:1:1223:25553:13513,LH00995:25:23T55JLT4:1:1254:32729:4559,LH00995:25:23T55JLT4:1:1263:13313:11509,LH00995:25:23T55JLT4:1:1312:32041:14942,LH00995:25:23T55JLT4:1:1349:35763:24583,LH00995:25:23T55JLT4:1:1351:40560:12966,LH00995:25:23T55JLT4:1:1363:18733:10753,LH00995:25:23T55JLT4:1:1371:29525:5680,LH00995:25:23T55JLT4:1:1371:29542:5680,LH00995:25:23T55JLT4:1:1375:36450:25578,LH00995:25:23T55JLT4:1:1383:10813:27301,LH00995:25:23T55JLT4:1:1448:8006:18768,LH00995:25:23T55JLT4:1:1456:3985:7432,LH00995:25:23T55JLT4:1:1486:48262:14732,LH00995:25:23T55JLT4:1:1498:51773:21262,LH00995:25:23T55JLT4:1:2158:22835:4545,LH00995:25:23T55JLT4:1:2178:29606:28632,LH00995:25:23T55JLT4:1:2184:35285:5316,LH00995:25:23T55JLT4:1:2193:29186:7978,LH00995:25:23T55JLT4:1:2254:31135:10178,LH00995:25:23T55JLT4:1:2273:40576:18796,LH00995:25:23T55JLT4:1:2278:40398:22719,LH00995:25:23T55JLT4:1:2290:1275:14087,LH00995:25:23T55JLT4:1:2309:29687:24176,LH00995:25:23T55JLT4:1:2322:45657:16357,LH00995:25:23T55JLT4:1:2358:9519:15335,LH00995:25:23T55JLT4:1:2363:6728:13471,LH00995:25:23T55JLT4:1:2369:28288:21724,LH00995:25:23T55JLT4:1:2413:19243:14746,LH00995:25:23T55JLT4:1:2420:33400:17885,LH00995:25:23T55JLT4:1:2444:31418:9211,LH00995:25:23T55JLT4:1:2449:9753:8875,LH00995:25:23T55JLT4:1:2463:51651:8132,LH00995:25:23T55JLT4:1:2468:9875:23013,LH00995:25:23T55JLT4:2:1142:40002:12392,LH00995:25:23T55JLT4:2:1168:1307:10977,LH00995:25:23T55JLT4:2:1202:7019:20589,LH00995:25:23T55JLT4:2:1232:22722:6086,LH00995:25:23T55JLT4:2:1305:16703:14606,LH00995:25:23T55JLT4:2:1362:48116:3999,LH00995:25:23T55JLT4:2:1362:48124:4013,LH00995:25:23T55JLT4:2:1376:44298:8791,LH00995:25:23T55JLT4:2:1389:21880:8609,LH00995:25:23T55JLT4:2:1401:4527:6353,LH00995:25:23T55JLT4:2:1479:22811:10556,LH00995:25:23T55JLT4:2:1495:33190:28422,LH00995:25:23T55JLT4:2:2117:3548:4713,LH00995:25:23T55JLT4:2:2187:13418:5330,LH00995:25:23T55JLT4:2:2188:28652:27567,LH00995:25:23T55JLT4:2:2192:30205:8146,LH00995:25:23T55JLT4:2:2256:50786:3158,LH00995:25:23T55JLT4:2:2268:25254:23896,LH00995:25:23T55JLT4:2:2317:36531:2485,LH00995:25:23T55JLT4:2:2371:41782:28002,LH00995:25:23T55JLT4:2:2409:11032:4587,LH00995:25:23T55JLT4:2:2467:27066:11958,LH00995:25:23T55JLT4:2:2478:2747:25185,LH00995:25:23T55JLT4:3:1106:19979:23896,LH00995:25:23T55JLT4:3:1114:37065:12995,LH00995:25:23T55JLT4:3:1136:20537:28366,LH00995:25:23T55JLT4:3:1154:2788:6759,LH00995:25:23T55JLT4:3:1232:20440:7684,LH00995:25:23T55JLT4:3:1255:20909:27077,LH00995:25:23T55JLT4:3:1281:27592:19959,LH00995:25:23T55JLT4:3:1284:23968:15447,LH00995:25:23T55JLT4:3:1293:10757:13639,LH00995:25:23T55JLT4:3:1391:51668:23938,LH00995:25:23T55JLT4:3:1455:47445:13093,LH00995:25:23T55JLT4:3:1464:5514:8230,LH00995:25:23T55JLT4:3:1475:26864:11916,LH00995:25:23T55JLT4:3:1477:29202:27455,LH00995:25:23T55JLT4:3:2109:40196:1659,LH00995:25:23T55JLT4:3:2244:20319:18431,LH00995:25:23T55JLT4:3:2255:39080:14073,LH00995:25:23T55JLT4:3:2355:12172:3088,LH00995:25:23T55JLT4:3:2368:51231:28955,LH00995:25:23T55JLT4:3:2419:17940:13611,LH00995:25:23T55JLT4:3:2419:43594:24190,LH00995:25:23T55JLT4:3:2419:45900:10612,LH00995:25:23T55JLT4:3:2457:2869:3452,LH00995:25:23T55JLT4:3:2464:30512:15321,LH00995:25:23T55JLT4:3:2465:31977:12056,LH00995:25:23T55JLT4:3:2475:25812:26628,LH00995:25:23T55JLT4:3:2490:44362:14256,LH00995:25:23T55JLT4:4:1128:11679:2878,LH00995:25:23T55JLT4:4:1222:26993:19006,LH00995:25:23T55JLT4:4:1227:28190:27749,LH00995:25:23T55JLT4:4:1248:45131:29039,LH00995:25:23T55JLT4:4:1368:3840:1490,LH00995:25:23T55JLT4:4:1396:46320:2457,LH00995:25:23T55JLT4:4:1401:113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LT4:1:2445:19130:5218,LH00995:25:23T55JLT4:1:2447:16120:19931,LH00995:25:23T55JLT4:1:2447:43861:19356,LH00995:25:23T55JLT4:1:2451:37648:21206,LH00995:25:23T55JLT4:1:2453:47752:21528,LH00995:25:23T55JLT4:1:2454:4802:26699,LH00995:25:23T55JLT4:1:2456:9155:4979,LH00995:25:23T55JLT4:1:2458:48011:20239,LH00995:25:23T55JLT4:1:2460:36572:25788,LH00995:25:23T55JLT4:1:2461:50438:8889,LH00995:25:23T55JLT4:1:2464:51854:10304,LH00995:25:23T55JLT4:1:2466:35747:1995,LH00995:25:23T55JLT4:1:2468:5603:5050,LH00995:25:23T55JLT4:1:2477:7375:14172,LH00995:25:23T55JLT4:1:2478:11549:11874,LH00995:25:23T55JLT4:1:2480:6542:9533,LH00995:25:23T55JLT4:1:2484:45835:5176,LH00995:25:23T55JLT4:1:2484:52169:8244,LH00995:25:23T55JLT4:1:2486:48860:28856,LH00995:25:23T55JLT4:1:2486:9729:13681,LH00995:25:23T55JLT4:1:2493:24291:18782,LH00995:25:23T55JLT4:1:2495:22633:18039,LH00995:25:23T55JLT4:1:2496:7771:29711,LH00995:25:23T55JLT4:1:2497:3605:17619,LH00995:25:23T55JLT4:2:1101:11557:16400,LH00995:25:23T55JLT4:2:1102:32535:21122,LH00995:25:23T55JLT4:2:1103:36620:19847,LH00995:25:23T55JLT4:2:1109:3152:2878,LH00995:25:23T55JLT4:2:1114:41984:3046,LH00995:25:23T55JLT4:2:1120:39072:10332,LH00995:25:23T55JLT4:2:1121:6218:6815,LH00995:25:23T55JLT4:2:1123:1178:24989,LH00995:25:23T55JLT4:2:1134:9559:6969,LH00995:25:23T55JLT4:2:1135:45746:27637,LH00995:25:23T55JLT4:2:1136:1202:2359,LH00995:25:23T55JLT4:2:1140:36272:16918,LH00995:25:23T55JLT4:2:1143:14494:9828,LH00995:25:23T55JLT4:2:1143:14502:9842,LH00995:25:23T55JLT4:2:1144:51490:16904,LH00995:25:23T55JLT4:2:1151:24946:20925,LH00995:25:23T55JLT4:2:1152:1744:16273,LH00995:25:23T55JLT4:2:1153:48504:4503,LH00995:25:23T55JLT4:2:1154:48124:28562,LH00995:25:23T55JLT4:2:1155:34654:22915,LH00995:25:23T55JLT4:2:1161:47420:6213,LH00995:25:23T55JLT4:2:1163:32907:22215,LH00995:25:23T55JLT4:2:1173:6792:21934,LH00995:25:23T55JLT4:2:1174:6631:21626,LH00995:25:23T55JLT4:2:1177:12771:23462,LH00995:25:23T55JLT4:2:1177:21751:8272,LH00995:25:23T55JLT4:2:1178:22163:11958,LH00995:25:23T55JLT4:2:1183:33627:14914,LH00995:25:23T55JLT4:2:1190:42720:1546,LH00995:25:23T55JLT4:2:1195:4543:19468,LH00995:25:23T55JLT4:2:1197:31823:26502,LH00995:25:23T55JLT4:2:1202:19615:13009,LH00995:25:23T55JLT4:2:1203:26540:16147,LH00995:25:23T55JLT4:2:1213:49985:2331,LH00995:25:23T55JLT4:2:1216:31871:22635,LH00995:25:23T55JLT4:2:1221:18353:17661,LH00995:25:23T55JLT4:2:1222:21039:7235,LH00995:25:23T55JLT4:2:1223:32931:16203,LH00995:25:23T55JLT4:2:1226:12876:16554,LH00995:25:23T55JLT4:2:1228:36531:16582,LH00995:25:23T55JLT4:2:1229:17487:23952,LH00995:25:23T55JLT4:2:1230:47056:18529,LH00995:25:23T55JLT4:2:1230:49864:24877,LH00995:25:23T55JLT4:2:1236:34476:26166,LH00995:25:23T55JLT4:2:1245:20909:29347,LH00995:25:23T55JLT4:2:1250:14939:29571,LH00995:25:23T55JLT4:2:1264:50786:7109,LH00995:25:23T55JLT4:2:1268:14575:2037,LH00995:25:23T55JLT4:2:1269:11727:14200,LH00995:25:23T55JLT4:2:1272:11234:13485,LH00995:25:23T55JLT4:2:1274:29436:25451,LH00995:25:23T55JLT4:2:1275:37809:1617,LH00995:25:23T55JLT4:2:1277:7197:13779,LH00995:25:23T55JLT4:2:1278:3233:23588,LH00995:25:23T55JLT4:2:1280:28967:7544,LH00995:25:23T55JLT4:2:1286:23628:10682,LH00995:25:23T55JLT4:2:1287:43917:24358,LH00995:25:23T55JLT4:2:1291:25488:24667,LH00995:25:23T55JLT4:2:1302:15335:2906,LH00995:25:23T55JLT4:2:1307:27835:23938,LH00995:25:23T55JLT4:2:1309:20554:17492,LH00995:25:23T55JLT4:2:1311:22673:29487,LH00995:25:23T55JLT4:2:1311:22681:29501,LH00995:25:23T55JLT4:2:1314:28749:8903,LH00995:25:23T55JLT4:2:1314:44298:2177,LH00995:25:23T55JLT4:2:1316:24979:23308,LH00995:25:23T55JLT4:2:1319:32899:10122,LH00995:25:23T55JLT4:2:1319:34646:20379,LH00995:25:23T55JLT4:2:1320:22099:27315,LH00995:25:23T55JLT4:2:1320:22107:27329,LH00995:25:23T55JLT4:2:1320:4446:27231,LH00995:25:23T55JLT4:2:1323:50689:18151,LH00995:25:23T55JLT4:2:1378:43610:9449,LH00995:25:23T55JLT4:2:1466:40471:27413,LH00995:25:23T55JLT4:2:2152:7124:11355,LH00995:25:23T55JLT4:2:2186:7974:14031,LH00995:25:23T55JLT4:2:2208:14915:9155,LH00995:25:23T55JLT4:2:2211:37858:15433,LH00995:25:23T55JLT4:2:2243:43432:18473,LH00995:25:23T55JLT4:2:2252:22657:29347,LH00995:25:23T55JLT4:2:2428:50988:13569,LH00995:25:23T55JLT4:3:1320:26200:24947,LH00995:25:23T55JLT4:3:1454:2869:20575,LH00995:25:23T55JLT4:3:2235:25626:25213,LH00995:25:23T55JLT4:3:2321:12383:29683,LH00995:25:23T55JLT4:4:1119:17673:29571,LH00995:25:23T55JLT4:4:1150:44726:19314,LH00995:25:23T55JLT4:4:1460:9802:12518,LH00995:25:23T55JLT4:4:1475:13823:20183,LH00995:25:23T55JLT4:4:2260:17940:10276,LH00995:25:23T55JLT4:4:2262:42429:23966,LH00995:25:23T55JLT4:4:2408:20408:24050,LH00995:25:23T55JLT4:5:1468:15335:7502,LH00995:25:23T55JLT4:5:2202:1777:4867,LH00995:25:23T55JLT4:5:2232:30189:11509,LH00995:25:23T55JLT4:5:2319:30399:19076	out-of-frame	Furin-like_cysteine_rich_region(100%),Receptor_L_domain(78%)|	CDS	intergenic	115	20	+/+	./-	.	135	ENST00000584601	.	inversion	0.0017517136329017516	0.0684931506849315	0.035122432158916625																																						1173_M4Y	Arriba
fp_audit	1173_M4Y	fusion	ERBB2--PPP1R1B	ERBB2--PPP1R1B	ERBB2--PPP1R1B	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_M4Y	altera_exact	1173	clinical	patient	esophageal	Esophageal				63	unknown			False	1173_M4Y_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		25.30	38.00	30.69			AIH_Ext13_RNA	F04		False		dev_rna_exp0016_lib_s46	200.00		13.52	dev_rna_exp0016	F06		False		1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	PPP1R1B	39715510	39627306	chr17:39715510-chr17:39627306	+,+	Arriba	1	0	600		600	PASS	in-frame	ERBB2--PPP1R1B	ERBB2--PPP1R1B	confidence:high;duplicates(172),mismatches(1)	high	duplication	CDS	5'UTR/splice-site	65535	47658	172.0	1.0	0.0	0.0									300	300	True	duplicates(172),mismatches(1)		PASS		False	chr17:39715510	chr17:39627306	chr17:39715510-chr17:39627306	.	.	high	65535	47658	downstream	upstream	0		duplicates(172),mismatches(1)	AGCAGCTCCAAGTGTTTGAGACTCTGGAAGAGATCACAG___GTTACCTATACATCTCAGCATGGCCGGACAGCCTGCCTGACCTCAGCGTCTTCCAGAACCTGCAA|CCCGCCGCCTGCGCGGGGGAGCCCAGCACAGACCGCCGCCGGGACCCCGAGTCGCGCACCCCAGCCCCACCGCCCACCCCGCGCGCCATGGACCCC	ERBB2	PPP1R1B	ENSG00000141736	ENSG00000131771	QLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQ|paacagepstdrrrdpesrtpappptpraMD	LH00995:25:23T55JLT4:1:1101:27640:21416,LH00995:25:23T55JLT4:1:1102:23142:16259,LH00995:25:23T55JLT4:1:1102:41304:23336,LH00995:25:23T55JLT4:1:1103:35755:27651,LH00995:25:23T55JLT4:1:1103:49936:8104,LH00995:25:23T55JLT4:1:1104:18337:8693,LH00995:25:23T55JLT4:1:1104:24817:1364,LH00995:25:23T55JLT4:1:1105:26443:22985,LH00995:25:23T55JLT4:1:1107:4018:22649,LH00995:25:23T55JLT4:1:1107:7237:26600,LH00995:25:23T55JLT4:1:1108:24081:25479,LH00995:25:23T55JLT4:1:1108:40957:2247,LH00995:25:23T55JLT4:1:1112:25100:7544,LH00995:25:23T55JLT4:1:1113:49775:28366,LH00995:25:23T55JLT4:1:1113:6760:14116,LH00995:25:23T55JLT4:1:1114:17423:4307,LH00995:25:23T55JLT4:1:1114:2019:24765,LH00995:25:23T55JLT4:1:1114:47145:1785,LH00995:25:23T55JLT4:1:1116:3467:3732,LH00995:25:23T55JLT4:1:1116:46692:24933,LH00995:25:23T55JLT4:1:1117:36426:24050,LH00995:25:23T55JLT4:1:1118:29631:3704,LH00995:25:23T55JLT4:1:1118:36564:21906,LH00995:25:23T55JLT4:1:1118:39516:5302,LH00995:25:23T55JLT4:1:1118:45738:11257,LH00995:25:23T55JLT4:1:1119:29218:18151,LH00995:25:23T55JLT4:1:1119:3605:6829,LH00995:25:23T55JLT4:1:1120:10546:26194,LH00995:25:23T55JLT4:1:1120:37858:18571,LH00995:25:23T55JLT4:1:1121:7367:18081,LH00995:25:23T55JLT4:1:1122:41482:6829,LH00995:25:23T55JLT4:1:1122:9357:23546,LH00995:25:23T55JLT4:1:1124:17585:28436,LH00995:25:23T55JLT4:1:1125:36070:10570,LH00995:25:23T55JLT4:1:1125:36078:10584,LH00995:25:23T55JLT4:1:1126:25278:9477,LH00995:25:23T55JLT4:1:1127:39622:3887,LH00995:25:23T55JLT4:1:1128:11145:14144,LH00995:25:23T55JLT4:1:1129:36264:21108,LH00995:25:23T55JLT4:1:1129:9171:11257,LH00995:25:23T55JLT4:1:1131:13758:9646,LH00995:25:23T55JLT4:1:1131:43820:21388,LH00995:25:23T55JLT4:1:1132:21638:9085,LH00995:25:23T55JLT4:1:1135:42057:10150,LH00995:25:23T55JLT4:1:1136:13637:21486,LH00995:25:23T55JLT4:1:1136:25925:18389,LH00995:25:23T55JLT4:1:1137:50325:3284,LH00995:25:23T55JLT4:1:1137:51627:4503,LH00995:25:23T55JLT4:1:1138:9551:17801,LH00995:25:23T55JLT4:1:1139:16039:3144,LH00995:25:23T55JLT4:1:1139:26111:2653,LH00995:25:23T55JLT4:1:1140:19761:22285,LH00995:25:23T55JLT4:1:1140:34881:9351,LH00995:25:23T55JLT4:1:1140:4568:14970,LH00995:25:23T55JLT4:1:1143:17706:27077,LH00995:25:23T55JLT4:1:1143:21168:9842,LH00995:25:23T55JLT4:1:1143:27365:17661,LH00995:25:23T55JLT4:1:1144:18822:26881,LH00995:25:23T55JLT4:1:1145:31192:6913,LH00995:25:23T55JLT4:1:1145:35035:4853,LH00995:25:23T55JLT4:1:1145:45260:10122,LH00995:25:23T55JLT4:1:1145:7626:15307,LH00995:25:23T55JLT4:1:1146:23798:18011,LH00995:25:23T55JLT4:1:1147:27835:11299,LH00995:25:23T55JLT4:1:1147:39063:21752,LH00995:25:23T55JLT4:1:1148:51312:11495,LH00995:25:23T55JLT4:1:1149:29525:20225,LH00995:25:23T55JLT4:1:1149:29776:11243,LH00995:25:23T55JLT4:1:1149:31273:10108,LH00995:25:23T55JLT4:1:1151:14211:4405,LH00995:25:23T55JLT4:1:1151:14219:4391,LH00995:25:23T55JLT4:1:1152:26572:20855,LH00995:25:23T55JLT4:1:1153:3937:18866,LH00995:25:23T55JLT4:1:1153:3961:21654,LH00995:25:23T55JLT4:1:1154:10182:7880,LH00995:25:23T55JLT4:1:1154:10190:7866,LH00995:25:23T55JLT4:1:1155:51109:9127,LH00995:25:23T55JLT4:1:1155:9867:21990,LH00995:25:23T55JLT4:1:1157:28878:28716,LH00995:25:23T55JLT4:1:1158:25941:29151,LH00995:25:23T55JLT4:1:1161:35221:3690,LH00995:25:23T55JLT4:1:1162:40050:14606,LH00995:25:23T55JLT4:1:1162:45196:7488,LH00995:25:23T55JLT4:1:1162:45519:21976,LH00995:25:23T55JLT4:1:1163:11792:25998,LH00995:25:23T55JLT4:1:1164:31685:28730,LH00995:25:23T55JLT4:1:1164:46280:11355,LH00995:25:23T55JLT4:1:1166:9729:12476,LH00995:25:23T55JLT4:1:1167:27317:5302,LH00995:25:23T55JLT4:1:1167:34282:28296,LH00995:25:23T55JLT4:1:1168:20861:11551,LH00995:25:23T55JLT4:1:1168:28619:2653,LH00995:25:23T55JLT4:1:1168:46207:14592,LH00995:25:23T55JLT4:1:1169:37454:19664,LH00995:25:23T55JLT4:1:1170:12650:7894,LH00995:25:23T55JLT4:1:1170:37267:16484,LH00995:25:23T55JLT4:1: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4:1:1235:5474:13513,LH00995:25:23T55JLT4:1:1235:7035:15180,LH00995:25:23T55JLT4:1:1236:12188:4881,LH00995:25:23T55JLT4:1:1236:40156:13751,LH00995:25:23T55JLT4:1:1237:39039:9015,LH00995:25:23T55JLT4:1:1237:42688:3004,LH00995:25:23T55JLT4:1:1237:46021:23714,LH00995:25:23T55JLT4:1:1237:49556:11789,LH00995:25:23T55JLT4:1:1239:33878:25045,LH00995:25:23T55JLT4:1:1239:44605:10668,LH00995:25:23T55JLT4:1:1240:2400:24302,LH00995:25:23T55JLT4:1:1240:30512:25297,LH00995:25:23T55JLT4:1:1240:6720:11944,LH00995:25:23T55JLT4:1:1241:10579:25522,LH00995:25:23T55JLT4:1:1243:1696:16750,LH00995:25:23T55JLT4:1:1244:4171:15208,LH00995:25:23T55JLT4:1:1248:38020:10360,LH00995:25:23T55JLT4:1:1249:29655:13919,LH00995:25:23T55JLT4:1:1252:14947:21626,LH00995:25:23T55JLT4:1:1252:36871:20309,LH00995:25:23T55JLT4:1:1252:38934:5582,LH00995:25:23T55JLT4:1:1253:28296:12014,LH00995:25:23T55JLT4:1:1253:51757:8202,LH00995:25:23T55JLT4:1:1255:40156:14340,LH00995:25:23T55JLT4:1:1255:49265:10472,LH00995:25:23T55JLT4:1:1255:9236:6353,LH00995:25:23T55JLT4:1:1256:16622:28114,LH00995:25:23T55JLT4:1:1256:37826:22523,LH00995:25:23T55JLT4:1:1257:31483:12686,LH00995:25:23T55JLT4:1:1257:4932:23476,LH00995:25:23T55JLT4:1:1258:32616:25858,LH00995:25:23T55JLT4:1:1259:26856:12098,LH00995:25:23T55JLT4:1:1261:13701:6717,LH00995:25:23T55JLT4:1:1261:27406:14676,LH00995:25:23T55JLT4:1:1262:20060:19552,LH00995:25:23T55JLT4:1:1262:4568:4797,LH00995:25:23T55JLT4:1:1263:33303:6451,LH00995:25:23T55JLT4:1:1263:4001:5554,LH00995:25:23T55JLT4:1:1263:51627:5484,LH00995:25:23T55JLT4:1:1265:29857:27946,LH00995:25:23T55JLT4:1:1268:17568:27904,LH00995:25:23T55JLT4:1:1270:41329:28114,LH00995:25:23T55JLT4:1:1271:1388:12070,LH00995:25:23T55JLT4:1:1271:9583:12364	in-frame	Furin-like_cysteine_rich_region(100%),Receptor_L_domain(76%)|Protein_phosphatase_inhibitor_1/DARPP-32(100%)	CDS	5'UTR/splice-site	300	300	+/+	+/+	.	600	ENST00000584601	ENST00000580825	duplication	0.00455684666210982	0.006255473539346928	0.005406160100728374																																						1173_M4Y	Arriba
fp_audit	1173_M4Y	fusion	ERBB2--PPP1R1B	ERBB2--PPP1R1B	ERBB2--PPP1R1B	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_M4Y	altera_exact	1173	clinical	patient	esophageal	Esophageal				63	unknown			False	1173_M4Y_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		25.30	38.00	30.69			AIH_Ext13_RNA	F04		False		dev_rna_exp0016_lib_s46	200.00		13.52	dev_rna_exp0016	F06		False		1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr17	chr17	ERBB2	PPP1R1B	39715510	39627306	chr17:39715510-chr17:39627306	+,+	STAR-Fusion	1	0	2334	15.7762	2334	PASS		ERBB2--PPP1R1B	ERBB2--PPP1R1B	"[""GUO2018CR_TCGA"",""DEEPEST2019"",""TumorFusionsNAR2018"",""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr17:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[51288]""]"											INCL_NON_REF_SPLICE	YES_LDAS	1.231	False	False	False	GT	AG	2334				TCGA_StarF2019;ChimerSeq;DEEPEST2019;GUO2018;TumorFusionsNAR2018																																								1	.	.	.	.	15.7762	PASS	.	.	.	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25:51352:2009,LH00995:25:23T55JLT4:8:1240:12714:3186,LH00995:25:23T55JLT4:8:1240:48982:21360,LH00995:25:23T55JLT4:8:1244:42987:25213,LH00995:25:23T55JLT4:8:1248:14470:21752,LH00995:25:23T55JLT4:8:1256:8038:10865,LH00995:25:23T55JLT4:8:1263:1267:18613,LH00995:25:23T55JLT4:8:1276:34428:16189,LH00995:25:23T55JLT4:8:1315:17115:24260,LH00995:25:23T55JLT4:8:1316:37640:21136,LH00995:25:23T55JLT4:8:1324:44751:10248,LH00995:25:23T55JLT4:8:1340:47566:5092,LH00995:25:23T55JLT4:8:1340:9567:29375,LH00995:25:23T55JLT4:8:1342:49435:21696,LH00995:25:23T55JLT4:8:1343:12860:15208,LH00995:25:23T55JLT4:8:1345:32769:4069,LH00995:25:23T55JLT4:8:1356:20853:18095,LH00995:25:23T55JLT4:8:1376:3670:2766,LH00995:25:23T55JLT4:8:1396:40916:3606,LH00995:25:23T55JLT4:8:1405:45204:13695,LH00995:25:23T55JLT4:8:1412:47121:7964,LH00995:25:23T55JLT4:8:1431:19162:8469,LH00995:25:23T55JLT4:8:1470:37559:17324,LH00995:25:23T55JLT4:8:1473:20125:27147,LH00995:25:23T55JLT4:8:1477:51482:10865,LH00995:25:23T55JLT4:8:1478:40617:11803,LH00995:25:23T55JLT4:8:1488:19089:20449,LH00995:25:23T55JLT4:8:2104:51198:29515,LH00995:25:23T55JLT4:8:2105:34485:29711,LH00995:25:23T55JLT4:8:2111:16072:11187,LH00995:25:23T55JLT4:8:2128:27017:27595,LH00995:25:23T55JLT4:8:2148:18418:9533,LH00995:25:23T55JLT4:8:2177:45026:22299,LH00995:25:23T55JLT4:8:2187:40617:1490,LH00995:25:23T55JLT4:8:2224:13378:8791,LH00995:25:23T55JLT4:8:2226:4260:21668,LH00995:25:23T55JLT4:8:2255:50122:6521,LH00995:25:23T55JLT4:8:2276:49459:13191,LH00995:25:23T55JLT4:8:2308:30140:29333,LH00995:25:23T55JLT4:8:2309:33554:15741,LH00995:25:23T55JLT4:8:2316:24566:21052,LH00995:25:23T55JLT4:8:2360:17771:29683,LH00995:25:23T55JLT4:8:2363:35836:17254,LH00995:25:23T55JLT4:8:2384:19211:27609,LH00995:25:23T55JLT4:8:2413:39395:15040,LH00995:25:23T55JLT4:8:2413:6016:12826,LH00995:25:23T55JLT4:8:2417:12213:13555,LH00995:25:23T55JLT4:8:2418:51271:22859,LH00995:25:23T55JLT4:8:2420:44290:15251,LH00995:25:23T55JLT4:8:2426:31702:22481,LH00995:25:23T55JLT4:8:2431:23701:21458,LH00995:25:23T55JLT4:8:2431:28182:14648,LH00995:25:23T55JLT4:8:2433:15246:5078,LH00995:25:23T55JLT4:8:2435:16387:28156,LH00995:25:23T55JLT4:8:2437:4657:21346,LH00995:25:23T55JLT4:8:2448:41256:1645,LH00995:25:23T55JLT4:8:2470:9729:9141,LH00995:25:23T55JLT4:8:2479:36321:29585	YES_LDAS	GT	1.9086	chr17:39715510:+	ERBB2^ENSG00000141736.14	.	.	.	AG	1.231	chr17:39627306:+	PPP1R1B^ENSG00000131771.14	0	.	INCL_NON_REF_SPLICE		"[""GUO2018CR_TCGA"",""DEEPEST2019"",""TumorFusionsNAR2018"",""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr17:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[51288]""]"		False	chr17:39715510-chr17:39627306	2334.0	0.0		2334	1173_M4Y	STAR-Fusion
fp_audit	1173_M4Y	fusion	NOTCH2--NOTCH2P1	NOTCH2--NOTCH2P1	NOTCH2--NOTCH2P1	FP	FP		Arriba		dev_rna_exp0016	1173_M4Y	altera_exact	1173	clinical	patient	esophageal	Esophageal				63	unknown			False	1173_M4Y_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		25.30	38.00	30.69			AIH_Ext13_RNA	F04		False		dev_rna_exp0016_lib_s46	200.00		13.52	dev_rna_exp0016	F06		False		1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	NOTCH2	NOTCH2P1	119923637	119887924	chr1:119923637-chr1:119887924	-,-	Arriba	1	0	14		14	PASS	out-of-frame	NOTCH2--NOTCH2P1	NOTCH2--NOTCH2P1	confidence:high;duplicates(97),mismappers(1),mismatches(1)	high	deletion/read-through	CDS/splice-site	intergenic	369	112	97.0	1.0	1.0	0.0									10	4	False	duplicates(97),mismappers(1),mismatches(1)		PASS		False	chr1:119923637	chr1:119887924	chr1:119923637-chr1:119887924	.	.	high	369	112	upstream	downstream	0		duplicates(97),mismappers(1),mismatches(1)	CATGGTGTACCCCTATTATGGTGAGAAGTCAGCTGCTATGAAGAAACAGAGGATGACACGCAGATCCCTTCCTGGTGAACAAGAACAGGAGGTGGCTGG|GTGACTGTGCTGCACTGCATCCATGAGATCCCAAGACCAGTATGTGGAAATCCAGTCTTCTATGGAGTCCTTTCAGAAAAGTTGACACCAACCCCCT	NOTCH2	NOTCH2P1(997),ADAM30(5609)	ENSG00000134250	.	MVYPYYGEKSAAMKKQRMTRRSLPGEQEQEVAg|*	LH00995:25:23T55JLT4:1:1105:14454:6143,LH00995:25:23T55JLT4:1:2127:52007:26404,LH00995:25:23T55JLT4:2:2307:41304:3494,LH00995:25:23T55JLT4:2:2367:35989:4237,LH00995:25:23T55JLT4:3:2298:25844:3424,LH00995:25:23T55JLT4:5:1118:19203:20141,LH00995:25:23T55JLT4:5:1425:44128:1154,LH00995:25:23T55JLT4:5:1490:14615:14662,LH00995:25:23T55JLT4:5:2225:11242:27119,LH00995:25:23T55JLT4:5:2225:12690:24106,LH00995:25:23T55JLT4:5:2390:18062:1126,LH00995:25:23T55JLT4:5:2466:23644:26096,LH00995:25:23T55JLT4:5:2489:37898:5414,LH00995:25:23T55JLT4:6:1230:9495:27231,LH00995:25:23T55JLT4:6:2114:1291:24513,LH00995:25:23T55JLT4:6:2292:47655:19538,LH00995:25:23T55JLT4:8:2120:20877:15727,LH00995:25:23T55JLT4:1:1238:48254:16091,LH00995:25:23T55JLT4:1:1239:14437:24583,LH00995:25:23T55JLT4:1:1239:14882:24681,LH00995:25:23T55JLT4:1:1392:1963:18529,LH00995:25:23T55JLT4:1:2103:6081:13807,LH00995:25:23T55JLT4:1:2121:5013:18095,LH00995:25:23T55JLT4:1:2401:10053:28058,LH00995:25:23T55JLT4:1:2453:16452:27848,LH00995:25:23T55JLT4:2:1172:28061:2303,LH00995:25:23T55JLT4:2:1181:18191:22369,LH00995:25:23T55JLT4:2:1323:29760:23378,LH00995:25:23T55JLT4:2:1352:5320:7782,LH00995:25:23T55JLT4:2:1353:9527:14172,LH00995:25:23T55JLT4:2:1449:30682:28058,LH00995:25:23T55JLT4:2:2123:2432:16259,LH00995:25:23T55JLT4:2:2195:33174:12196,LH00995:25:23T55JLT4:2:2216:33247:28268,LH00995:25:23T55JLT4:2:2245:33117:21374,LH00995:25:23T55JLT4:2:2350:40665:20043,LH00995:25:23T55JLT4:2:2429:46555:3424,LH00995:25:23T55JLT4:2:2444:22196:25634,LH00995:25:23T55JLT4:2:2478:36200:24751,LH00995:25:23T55JLT4:3:1125:6420:12182,LH00995:25:23T55JLT4:3:1173:26386:17394,LH00995:25:23T55JLT4:3:1206:34056:27763,LH00995:25:23T55JLT4:3:1249:3929:26979,LH00995:25:23T55JLT4:3:1272:38060:29235,LH00995:25:23T55JLT4:3:1293:17212:6801,LH00995:25:23T55JLT4:3:1316:9236:23308,LH00995:25:23T55JLT4:3:1375:46482:29025,LH00995:25:23T55JLT4:3:1477:12650:15685,LH00995:25:23T55JLT4:3:1498:15813:9533,LH00995:25:23T55JLT4:3:2118:14502:12952,LH00995:25:23T55JLT4:3:2153:46692:20954,LH00995:25:23T55JLT4:3:2181:49589:6773,LH00995:25:23T55JLT4:3:2213:37721:21808,LH00995:25:23T55JLT4:3:2271:19340:9982,LH00995:25:23T55JLT4:3:2303:16525:19174,LH00995:25:23T55JLT4:3:2328:21144:11874,LH00995:25:23T55JLT4:3:2412:11072:18277,LH00995:25:23T55JLT4:3:2417:46652:2527,LH00995:25:23T55JLT4:3:2435:40900:1112,LH00995:25:23T55JLT4:3:2474:26904:24765,LH00995:25:23T55JLT4:4:1104:1016:29109,LH00995:25:23T55JLT4:4:2118:37672:12981,LH00995:25:23T55JLT4:4:2221:38570:28016,LH00995:25:23T55JLT4:4:2244:11137:2415,LH00995:25:23T55JLT4:4:2317:11994:3957,LH00995:25:23T55JLT4:4:2389:50859:11467,LH00995:25:23T55JLT4:4:2458:13062:7908,LH00995:25:23T55JLT4:5:1164:49411:16301,LH00995:25:23T55JLT4:5:1254:1469:24064,LH00995:25:23T55JLT4:5:1278:4867:1560,LH00995:25:23T55JLT4:5:1343:37510:22229,LH00995:25:23T55JLT4:5:1347:6121:10486,LH00995:25:23T55JLT4:5:1362:1550:5988,LH00995:25:23T55JLT4:5:1382:23142:4713,LH00995:25:23T55JLT4:5:1449:8977:29025,LH00995:25:23T55JLT4:5:1460:1736:25872,LH00995:25:23T55JLT4:5:2162:26144:17815,LH00995:25:23T55JLT4:5:2192:42081:13919,LH00995:25:23T55JLT4:5:2257:47113:15937,LH00995:25:23T55JLT4:5:2350:37332:24499,LH00995:25:23T55JLT4:5:2366:11104:9141,LH00995:25:23T55JLT4:5:2387:5433:13387,LH00995:25:23T55JLT4:6:1187:28514:4097,LH00995:25:23T55JLT4:6:1284:48246:10220,LH00995:25:23T55JLT4:6:1346:36823:25073,LH00995:25:23T55JLT4:6:1366:34209:17100,LH00995:25:23T55JLT4:6:1371:17560:3564,LH00995:25:23T55JLT4:6:1451:32705:5302,LH00995:25:23T55JLT4:6:2113:1671:16484,LH00995:25:23T55JLT4:6:2141:20740:10248,LH00995:25:23T55JLT4:6:2206:31524:24134,LH00995:25:23T55JLT4:6:2360:40916:23532,LH00995:25:23T55JLT4:6:2364:47461:6002,LH00995:25:23T55JLT4:6:2433:9818:25465,LH00995:25:23T55JLT4:6:2482:8224:13261,LH00995:25:23T55JLT4:7:1114:38707:13821,LH00995:25:23T55JLT4:7:1125:46425:4293,LH00995:25:23T55JLT4:7:1180:30844:2639,LH00995:25:23T55JLT4:7:1235:43311:3746,LH00995:25:23T55JLT4:7:1427:16387:11986,LH00995:25:23T55JLT4:7:1444:43982:5078,LH00995:25:23T55JLT4:7:1474:18353:15783,LH00995:25:23T55JLT4:7:1475:15295:19734,LH00995:25:23T55JLT4:7:2345:28029:14101,LH00995:25:23T55JLT4:7:2469:37445:28282,LH00995:25:23T55JLT4:8:1112:48788:28983,LH00995:25:23T55JLT4:8:1264:19987:29291,LH00995:25:23T55JLT4:8:1272:44201:19608,LH00995:25:23T55JLT4:8:1287:25610:2709,LH00995:25:23T55JLT4:8:1411:41361:3200,LH00995:25:23T55JLT4:8:1487:31928:1266,LH00995:25:23T55JLT4:8:2177:17512:24751,LH00995:25:23T55JLT4:8:2347:16945:22985	out-of-frame	Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(53%)|	CDS/splice-site	intergenic	10	4	-/-	./-	.	14	ENST00000256646	.	deletion/read-through	0.026385224274406333	0.034482758620689655	0.030433991447547992																																						1173_M4Y	Arriba
fp_audit	1173_M5U	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	1210	991													1	0	False			FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	1210	991	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:2:1104:16169:6899	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0008257638315441783	0.0	0.00041288191577208916																																						1173_M5U	Arriba
fp_audit	1173_M5U	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243695591	243341039	chr1:243695591-chr1:243341039	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	7687	409	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243695591	chr1:243341039	chr1:243695591-chr1:243341039	.	.	low	7687	409	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	TGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|ATGTTGATCTTGTCTCAGAATATTGCCCAACTGGAGGCCCAGGTGGAAAAGGTTACAAAGGAAAAGATTTCAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	KTDGSFIGYKEKPQDVDLPYPLNNFSVA|nvdlvseycptggpggkgykgkdf	LH00995:25:23T55JLT4:6:1112:38513:1154,LH00995:25:23T55JLT4:8:1442:50139:16470	out-of-frame	PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(42%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00013007284079084288	0.0	6.503642039542144e-05																																						1173_M5U	Arriba
fp_audit	1173_M5U	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243378863	243664883	chr1:243378863-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	1649	11116													1	0	False			FAIL		False	chr1:243378863	chr1:243664883	chr1:243378863-chr1:243664883	.	.	low	1649	11116	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCACCAG|AATGCCAGTTAATGAAAACAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EQQKAALAREECLRLTELLGESEHQLHLTr|mpvnen	LH00995:25:23T55JLT4:6:1486:25731:24583	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(76%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0006060606060606061	0.0	0.00030303030303030303																																						1173_M5U	Arriba
fp_audit	1173_M5U	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	1210	991													1	0	False			FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	1210	991	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh*	LH00995:25:23T55JLT4:2:1104:16169:6899	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0008257638315441783	0.0	0.00041288191577208916																																						1173_M5U	Arriba
fp_audit	1173_M5U	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243695591	243341039	chr1:243695591-chr1:243341039	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	7687	409	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243695591	chr1:243341039	chr1:243695591-chr1:243341039	.	.	low	7687	409	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	TGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|ATGTTGATCTTGTCTCAGAATATTGCCCAACTGGAGGCCCAGGTGGAAAAGGTTACAAAGGAAAAGATTTCAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	KTDGSFIGYKEKPQDVDLPYPLNNFSVA|nvdlvseycptggpggkgykgkdf	LH00995:25:23T55JLT4:6:1112:38513:1154,LH00995:25:23T55JLT4:8:1442:50139:16470	out-of-frame	PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(42%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00013007284079084288	0.0	6.503642039542144e-05																																						1173_M5U	Arriba
fp_audit	1173_M5U	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243378863	243664883	chr1:243378863-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	1649	11116													1	0	False			FAIL		False	chr1:243378863	chr1:243664883	chr1:243378863-chr1:243664883	.	.	low	1649	11116	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCACCAG|AATGCCAGTTAATGAAAACAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	EQQKAALAREECLRLTELLGESEHQLHLTr|mpvnen	LH00995:25:23T55JLT4:6:1486:25731:24583	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(76%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0006060606060606061	0.0	0.00030303030303030303																																						1173_M5U	Arriba
fp_audit	1173_M5U	fusion	JAK2--KDM1A	KDM1A--JAK2	JAK2--KDM1A	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr9	KDM1A	JAK2	23019947	5092585	chr1:23019947-chr9:5092585	+,+	Arriba	1	0	3		3	PASS	out-of-frame	KDM1A--JAK2	JAK2--KDM1A	confidence:medium	medium	translocation	CDS/splice-site	intron	1411	9													3	0	False			FAIL		False	chr1:23019947	chr9:5092585	chr1:23019947-chr9:5092585	.	.	medium	1411	9	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	GCCGGGGTCCGCAGGGCCTCAGGCCGGCCCTACTGTCGTGCCTGGGTCTGCGACCCCCATGGAAACTGGAATAGCAGAGACTCCGGAGGGGCGTCGGACCAGCCGGCGCAAGCGGGCGAAG|g|TAgAGTACCGTAAGGGAAAGATGAAA	KDM1A	JAK2	ENSG00000004487	ENSG00000096968	PGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAK|veyrkgkm	LH00995:25:23T55JLT4:5:2481:33554:6100,LH00995:25:23T55JLT4:6:2258:18523:1056,LH00995:25:23T55JLT4:8:2120:26556:5750	out-of-frame	|Protein_kinase_domain(18%)	CDS/splice-site	intron	3	0	+/+	+/+	.	3	ENST00000356634	.	translocation	0.0021216407355021216	0.0	0.0010608203677510608																																						1173_M5U	Arriba
fp_audit	1173_M5U	fusion	JAK2--KDM1A	KDM1A--JAK2	JAK2--KDM1A	FP	FP		Arriba		dev_rna_exp0016	1173_M5U	altera_exact	1173	clinical	patient	breast	Breast				77	unknown			False	1173_M5U_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.60	35.00	47.84			AIH_Ext12_RNA	D02		False		dev_rna_exp0016_lib_s12	200.00		64.84	dev_rna_exp0016	D02		False		1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr9	KDM1A	JAK2	23019947	5092585	chr1:23019947-chr9:5092585	+,+	Arriba	1	0	3		3	PASS	out-of-frame	KDM1A--JAK2	JAK2--KDM1A	confidence:medium	medium	translocation	CDS/splice-site	intron	1411	9													3	0	False			FAIL		False	chr1:23019947	chr9:5092585	chr1:23019947-chr9:5092585	.	.	medium	1411	9	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	GCCGGGGTCCGCAGGGCCTCAGGCCGGCCCTACTGTCGTGCCTGGGTCTGCGACCCCCATGGAAACTGGAATAGCAGAGACTCCGGAGGGGCGTCGGACCAGCCGGCGCAAGCGGGCGAAG|g|TAgAGTACCGTAAGGGAAAGATGAAA	KDM1A	JAK2	ENSG00000004487	ENSG00000096968	PGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAK|veyrkgkm	LH00995:25:23T55JLT4:5:2481:33554:6100,LH00995:25:23T55JLT4:6:2258:18523:1056,LH00995:25:23T55JLT4:8:2120:26556:5750	out-of-frame	|Protein_kinase_domain(18%)	CDS/splice-site	intron	3	0	+/+	+/+	.	3	ENST00000356634	.	translocation	0.0021216407355021216	0.0	0.0010608203677510608																																						1173_M5U	Arriba
fp_audit	1173_N5V	fusion	BRAF--NDUFB2	NDUFB2--BRAF	BRAF--NDUFB2	FP	FP		Arriba		dev_rna_exp0016	1173_N5V	altera_exact	1173	clinical	patient	prostate	Prostate				88	unknown			False	1173_N5V_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.50	38.00	34.22			AIH_Ext13_RNA	A05		False		dev_rna_exp0016_lib_s49	200.00		80.94	dev_rna_exp0016	A07		False		1173_N5V_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_N5V_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr7	chr7	NDUFB2	BRAF	140715932	140834703	chr7:140715932-chr7:140834703	-,-	Arriba	1	0	5		5	PASS		NDUFB2--BRAF	BRAF--NDUFB2	confidence:medium;duplicates(3)	medium	duplication/3'-3'	intron	CDS/splice-site	6	12189	3.0	0.0	0.0	0.0									0	5		duplicates(3)		FAIL		False	chr7:140715932	chr7:140834703	chr7:140715932-chr7:140834703	.	.	medium	6	12189	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(3)	CCAAGCTGTGTTGACTCAGATCATCTGACTCCGCCTAGAACAAGACAGCAGGATCTGAATCTCAG|TTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGT	NDUFB2	BRAF	ENSG00000090266	ENSG00000157764	.	LH00995:25:23T55JLT4:1:2168:32915:3844,LH00995:25:23T55JLT4:2:1461:25828:19174,LH00995:25:23T55JLT4:2:2131:48658:19622,LH00995:25:23T55JLT4:3:2105:40706:2822,LH00995:25:23T55JLT4:3:2232:19599:25676,LH00995:25:23T55JLT4:3:2233:1445:11439,LH00995:25:23T55JLT4:6:2282:48246:8314,LH00995:25:23T55JLT4:7:2249:23911:26082	.	|Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%),Raf-like_Ras-binding_domain(100%)	intron	CDS/splice-site	0	5	+/-	-/-	.	5	.	ENST00000642808	duplication/3'-3'	0.0	0.0004100377234705593	0.00020501886173527966																																						1173_N5V	Arriba
fp_audit	1173_N5V	fusion	CLIC4--EML4	CLIC4--EML4	CLIC4--EML4	FP	FP		Arriba		dev_rna_exp0016	1173_N5V	altera_exact	1173	clinical	patient	prostate	Prostate				88	unknown			False	1173_N5V_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.50	38.00	34.22			AIH_Ext13_RNA	A05		False		dev_rna_exp0016_lib_s49	200.00		80.94	dev_rna_exp0016	A07		False		1173_N5V_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_N5V_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr2	CLIC4	EML4	24773644	42303332	chr1:24773644-chr2:42303332	+,+	Arriba	1	0	3		3	PASS		CLIC4--EML4	CLIC4--EML4	confidence:low;mismatches(1)	low	translocation	intron	CDS	1	4621	0.0	1.0	0.0	0.0									0	3		mismatches(1)		FAIL		False	chr1:24773644	chr2:42303332	chr1:24773644-chr2:42303332	.	.	low	1	4621	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(3.0<8.0)	mismatches(1)	TTTTTTTTTTTTTTTTTTTTTTGACAGGGCCTCACTTTGTCATCCgGGCT|TTGGGGTCTTGCCACACATCCCTTCAAAGATTTGCTCTTGACATGTGCTCAGGACAGG	CLIC4	EML4	ENSG00000169504	ENSG00000143924	.	LH00995:25:23T55JLT4:2:1176:46878:20883,LH00995:25:23T55JLT4:4:2219:11598:3438,LH00995:25:23T55JLT4:6:2270:23620:20813,LH00995:25:23T55JLT4:8:2411:36200:27077	.	|WD_domain__G-beta_repeat(51%)	intron	CDS	0	3	+/+	+/+	.	3	.	ENST00000318522	translocation	0.0	0.0006487889273356401	0.00032439446366782005																																						1173_N5V	Arriba
fp_audit	1173_NBF	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_NBF	altera_exact	1173	clinical	patient	breast	Breast				70	unknown			False	1173_NBF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.00	38.00	60.53			AIH_Ext13_RNA	B05		False		dev_rna_exp0016_lib_s50	200.00		63.89	dev_rna_exp0016	B07		False		1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	5'UTR/splice-site	661	528	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	661	528	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	AGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	TMKQr|lshh*	LH00995:25:23T55JLT4:5:1159:33085:6661,LH00995:25:23T55JLT4:5:1159:33093:6647,LH00995:25:23T55JLT4:7:2316:26144:23504	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.001890359168241966	0.000945179584120983																																						1173_NBF	Arriba
fp_audit	1173_NBF	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_NBF	altera_exact	1173	clinical	patient	breast	Breast				70	unknown			False	1173_NBF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.00	38.00	60.53			AIH_Ext13_RNA	B05		False		dev_rna_exp0016_lib_s50	200.00		63.89	dev_rna_exp0016	B07		False		1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243545510	243304713	chr1:243545510-chr1:243304713	-,+	Arriba	1	0	1		1	PASS	in-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	1791	269													1	0	True			FAIL		False	chr1:243545510	chr1:243304713	chr1:243545510-chr1:243304713	.	.	low	1791	269	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|GAGAAGCTAAAACTTACTTATGAGGAAAAGTGTGAAATTGAGGAATCCCAATTGAAGTTTTTGAG___GAACGACTTAGCTGAATATCAGA	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	LGGGPDDAKEIMRHSFFSGVNWQDVYDKK|EKLKLTYEEKCEIEESQLKFLRNDLAEYQ	LH00995:25:23T55JLT4:3:1122:29388:1518	in-frame	PH_domain(100%),Protein_kinase_domain(100%)|Centrosomal_colon_cancer_autoantigen_protein_family(68%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.0005580357142857143	0.0	0.00027901785714285713																																						1173_NBF	Arriba
fp_audit	1173_NBF	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_NBF	altera_exact	1173	clinical	patient	breast	Breast				70	unknown			False	1173_NBF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.00	38.00	60.53			AIH_Ext13_RNA	B05		False		dev_rna_exp0016_lib_s50	200.00		63.89	dev_rna_exp0016	B07		False		1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243545510	243415702	chr1:243545510-chr1:243415702	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	CDS/splice-site	1791	610	3.0	0.0	0.0	0.0									1	0	False	duplicates(3)		FAIL		False	chr1:243545510	chr1:243415702	chr1:243545510-chr1:243415702	.	.	low	1791	610	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	ATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACG___CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|ACAGGAAAAAGATAGCATTCAGCAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	LLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKK|tgkr*	LH00995:25:23T55JLT4:1:1471:10093:9351,LH00995:25:23T55JLT4:1:2277:14268:7053,LH00995:25:23T55JLT4:3:2427:15271:13723,LH00995:25:23T55JLT4:5:2278:23361:20897	out-of-frame	PH_domain(100%),Protein_kinase_domain(100%)|Centrosomal_colon_cancer_autoantigen_protein_family(23%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.0005580357142857143	0.0	0.00027901785714285713																																						1173_NBF	Arriba
fp_audit	1173_NBF	fusion	AKT3--SMYD3	SMYD3--AKT3	AKT3--SMYD3	FP	FP		Arriba		dev_rna_exp0016	1173_NBF	altera_exact	1173	clinical	patient	breast	Breast				70	unknown			False	1173_NBF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.00	38.00	60.53			AIH_Ext13_RNA	B05		False		dev_rna_exp0016_lib_s50	200.00		63.89	dev_rna_exp0016	B07		False		1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SMYD3	AKT3	246507054	243843282	chr1:246507054-chr1:243843282	-,-	Arriba	1	0	2		2	PASS	out-of-frame	SMYD3--AKT3	AKT3--SMYD3	confidence:low;duplicates(1)	low	deletion	CDS/splice-site	5'UTR/splice-site	459	528	1.0	0.0	0.0	0.0									0	2	False	duplicates(1)		FAIL		False	chr1:246507054	chr1:243843282	chr1:246507054-chr1:243843282	.	.	low	459	528	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(1)	GTCGTGGCGTCGTCTGCGACCGCTGCCTTCTCGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATC	SMYD3	AKT3	ENSG00000185420	ENSG00000117020	RGVVCDRCLLg|lshh*	LH00995:25:23T55JLT4:5:1308:2108:26628,LH00995:25:23T55JLT4:5:1367:31370:25662,LH00995:25:23T55JLT4:7:1106:3103:23532	out-of-frame	MYND_finger(17%),SET_domain(26%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	2	-/-	-/-	.	2	ENST00000490107	ENST00000673466	deletion	0.0	0.0037735849056603774	0.0018867924528301887																																						1173_NBF	Arriba
fp_audit	1173_NBF	fusion	AKT3--SMYD3	SMYD3--AKT3	AKT3--SMYD3	FP	FP		Arriba		dev_rna_exp0016	1173_NBF	altera_exact	1173	clinical	patient	breast	Breast				70	unknown			False	1173_NBF_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.00	38.00	60.53			AIH_Ext13_RNA	B05		False		dev_rna_exp0016_lib_s50	200.00		63.89	dev_rna_exp0016	B07		False		1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NBF_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SMYD3	AKT3	246327201	243695716	chr1:246327201-chr1:243695716	-,-	Arriba	1	0	1		1	PASS	out-of-frame	SMYD3--AKT3	AKT3--SMYD3	confidence:low	low	deletion	CDS/splice-site	CDS/splice-site	1337	4475													0	1	False			FAIL		False	chr1:246327201	chr1:243695716	chr1:246327201-chr1:243695716	.	.	low	1337	4475	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	TTGAAGCCTTTGCAAAA|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTA	SMYD3	AKT3	ENSG00000185420	ENSG00000117020	EAFAK|eni*	LH00995:25:23T55JLT4:5:1250:23134:13191	out-of-frame	MYND_finger(100%),SET_domain(79%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	-/-	-/-	.	1	ENST00000490107	ENST00000336199	deletion	0.0	0.00022341376228775692	0.00011170688114387846																																						1173_NBF	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	Arriba	1	0	15		15	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	confidence:high;duplicates(2)	high	translocation	CDS/splice-site	5'UTR/splice-site	1214	327	2.0	0.0	0.0	0.0									1	14	True	duplicates(2)		PASS		False	chr20:19889658	chr17:43545668	chr20:19889658-chr17:43545668	.	.	high	1214	327	downstream	downstream	0		duplicates(2)	AGTCCCCGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|GTCTCGGCCCCCGCTTGGGGCCCCGGCCGTGCGGCCGGAGGGAGCGGCCGGATGGAGCGGAGGATGAAAGCCGGATACTTGGACCAGCAAGTGCCCTACACCTTCAGCAGC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	SPACSGASLGEMTAWTMGARGLDKRGSFFK|vsapawgpgraaggsgrMERRMKAGYLDQQVPYTFS	LH00995:25:23T55JLT4:2:1229:47882:5414,LH00995:25:23T55JLT4:2:2202:16460:11299,LH00995:25:23T55JLT4:5:1246:10190:11958,LH00995:25:23T55JLT4:5:1296:27171:18249,LH00995:25:23T55JLT4:5:1301:31936:12406,LH00995:25:23T55JLT4:5:1301:47437:16329,LH00995:25:23T55JLT4:5:2487:46531:21122,LH00995:25:23T55JLT4:6:1469:3427:16750,LH00995:25:23T55JLT4:6:2382:13701:26418,LH00995:25:23T55JLT4:8:1175:26864:9057,LH00995:25:23T55JLT4:8:1297:31944:19734,LH00995:25:23T55JLT4:8:1448:50551:22593,LH00995:25:23T55JLT4:8:1465:19906:22845,LH00995:25:23T55JLT4:8:1465:19923:22845,LH00995:25:23T55JLT4:8:2147:4519:8805,LH00995:25:23T55JLT4:8:2436:46611:23223,LH00995:25:23T55JLT4:2:2105:20044:13191	in-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	14	+/+	-/-	.	15	ENST00000255006	ENST00000319349	translocation	0.0008230452674897119	0.04105571847507331	0.020939381871281512																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	Arriba	1	0	7		7	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	confidence:medium;duplicates(5)	medium	translocation	CDS/splice-site	CDS/splice-site	1214	2894	5.0	0.0	0.0	0.0									0	7	True	duplicates(5)		FAIL		False	chr20:19889658	chr17:43545367	chr20:19889658-chr17:43545367	.	.	medium	1214	2894	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(7.0<8.0)	duplicates(5)	GGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|AAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAG___ATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAG___CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCG	RIN2	ETV4	ENSG00000132669	ENSG00000175832	GARGLDKRGSFFK|KSPGNGSLREALIGPLGKLMDPGSLPPLDSEDLFQDLSHFQETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSP	LH00995:25:23T55JLT4:2:1214:23854:6731,LH00995:25:23T55JLT4:2:1364:2343:19216,LH00995:25:23T55JLT4:5:1108:1696:17647,LH00995:25:23T55JLT4:5:1309:31426:27749,LH00995:25:23T55JLT4:5:1469:20230:14746,LH00995:25:23T55JLT4:5:2291:36734:1546,LH00995:25:23T55JLT4:5:2354:12261:9884,LH00995:25:23T55JLT4:6:1301:9632:1126,LH00995:25:23T55JLT4:6:1301:9640:1140,LH00995:25:23T55JLT4:6:2140:26516:6072,LH00995:25:23T55JLT4:6:2365:37712:13583,LH00995:25:23T55JLT4:8:1115:25270:8959	in-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(96%)	CDS/splice-site	CDS/splice-site	0	7	+/+	-/-	.	7	ENST00000255006	ENST00000319349	translocation	0.0	0.002412961047914512	0.001206480523957256																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43536479	chr20:19889658-chr17:43536479	+,-	Arriba	1	0	5		5	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:medium;duplicates(1)	medium	translocation	CDS/splice-site	CDS/splice-site	1214	10369	1.0	0.0	0.0	0.0									0	5	False	duplicates(1)		FAIL		False	chr20:19889658	chr17:43536479	chr20:19889658-chr17:43536479	.	.	medium	1214	10369	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(1)	ATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGG	RIN2	ETV4	ENSG00000132669	ENSG00000175832	MTAWTMGARGLDKRGSFFK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:2:1268:16606:29039,LH00995:25:23T55JLT4:2:1480:41159:21458,LH00995:25:23T55JLT4:5:1101:26233:7404,LH00995:25:23T55JLT4:5:1125:50697:7740,LH00995:25:23T55JLT4:5:1237:44929:10388,LH00995:25:23T55JLT4:6:2116:50292:27161	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	0	5	+/+	-/-	.	5	ENST00000255006	ENST00000319349	translocation	0.0	0.0004819741661846925	0.00024098708309234625																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43533985	chr20:19889658-chr17:43533985	+,-	Arriba	1	0	1		1	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:low;duplicates(2)	low	translocation	CDS/splice-site	CDS/splice-site	1214	15974	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr20:19889658	chr17:43533985	chr20:19889658-chr17:43533985	.	.	low	1214	15974	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	GGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	GARGLDKRGSFFK|*	LH00995:25:23T55JLT4:5:1116:28247:15657,LH00995:25:23T55JLT4:5:1212:24032:9421,LH00995:25:23T55JLT4:8:1188:2019:24961	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(72%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000255006	ENST00000319349	translocation	0.0	6.259780907668232e-05	3.129890453834116e-05																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	Arriba	1	0	21		21	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	confidence:high;duplicates(8)	high	translocation	CDS/splice-site	5'UTR/splice-site	1208	382	8.0	0.0	0.0	0.0									3	18	True	duplicates(8)		PASS		False	chr20:19889658	chr17:43545668	chr20:19889658-chr17:43545668	.	.	high	1208	382	downstream	downstream	0		duplicates(8)	AGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|GTCTCGGCCCCCGCTTGGGGCCCCGGCCGTGCGGCCGGAGGGAGCGGCCGGATGGAGCGGAGGATGAAAGCCGGATACTTGGACCAGCAAGTGCCCTACACCTTCAGCAGC___AAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAG___ATCTCTTCCAGGATCTAAGT	RIN2	ETV4	ENSG00000132669	ENSG00000175832	SGASLGEMTAWTMGARGLDKRGSFFK|vsapawgpgraaggsgrmerrmkagyldqqvpytfsskspgngslrealigplgklMDPGSLPPLDSEDLFQDL	LH00995:25:23T55JLT4:2:1316:8936:10598,LH00995:25:23T55JLT4:2:1422:48351:21696,LH00995:25:23T55JLT4:2:2366:21225:27651,LH00995:25:23T55JLT4:5:1118:26419:23728,LH00995:25:23T55JLT4:5:1121:36086:1322,LH00995:25:23T55JLT4:5:1235:24186:2569,LH00995:25:23T55JLT4:5:1277:3411:19833,LH00995:25:23T55JLT4:5:1338:39161:1855,LH00995:25:23T55JLT4:5:1341:34048:20463,LH00995:25:23T55JLT4:5:2126:6250:25479,LH00995:25:23T55JLT4:5:2148:9203:4727,LH00995:25:23T55JLT4:5:2360:20343:7880,LH00995:25:23T55JLT4:6:1471:30326:3985,LH00995:25:23T55JLT4:6:1487:19647:10823,LH00995:25:23T55JLT4:6:2375:19057:2541,LH00995:25:23T55JLT4:6:2467:50333:5652,LH00995:25:23T55JLT4:6:2473:15497:10921,LH00995:25:23T55JLT4:8:1110:8386:27021,LH00995:25:23T55JLT4:8:1118:12925:15152,LH00995:25:23T55JLT4:8:1118:12933:15166,LH00995:25:23T55JLT4:8:1188:31135:19650,LH00995:25:23T55JLT4:8:1346:8613:20491,LH00995:25:23T55JLT4:8:1395:30318:24401,LH00995:25:23T55JLT4:8:2133:38473:16610,LH00995:25:23T55JLT4:8:2363:18337:21304,LH00995:25:23T55JLT4:2:2143:5134:18445,LH00995:25:23T55JLT4:5:2487:1930:18950,LH00995:25:23T55JLT4:6:2308:51401:17002,LH00995:25:23T55JLT4:8:1132:46725:19132	in-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(100%)	CDS/splice-site	5'UTR/splice-site	3	18	+/+	-/-	.	21	ENST00000255006	ENST00000586764	translocation	0.002477291494632535	0.045	0.023738645747316267																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	Arriba	1	0	9		9	PASS		RIN2--ETV4	ETV4--RIN2	confidence:medium;duplicates(11)	medium	translocation	CDS/splice-site	CDS/splice-site	1208	3673	11.0	0.0	0.0	0.0									0	9		duplicates(11)		FAIL		False	chr20:19889658	chr17:43545367	chr20:19889658-chr17:43545367	.	.	medium	1208	3673	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(11)	ATTCTGCTTACAAAG___GAGTCCCCGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|AAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAG___ATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAG___CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	.	LH00995:25:23T55JLT4:2:1146:26896:6395,LH00995:25:23T55JLT4:2:1146:26912:6395,LH00995:25:23T55JLT4:5:1282:16776:17787,LH00995:25:23T55JLT4:5:2168:10093:10304,LH00995:25:23T55JLT4:5:2345:28854:12924,LH00995:25:23T55JLT4:5:2372:23660:22145,LH00995:25:23T55JLT4:6:1123:44492:3270,LH00995:25:23T55JLT4:6:1123:44508:3270,LH00995:25:23T55JLT4:6:1183:48157:10458,LH00995:25:23T55JLT4:6:1203:43481:13345,LH00995:25:23T55JLT4:6:1334:28546:28478,LH00995:25:23T55JLT4:6:1334:28555:28492,LH00995:25:23T55JLT4:6:2108:27875:27539,LH00995:25:23T55JLT4:6:2265:46757:3830,LH00995:25:23T55JLT4:8:1228:38311:26867,LH00995:25:23T55JLT4:8:2133:41741:27175,LH00995:25:23T55JLT4:8:2352:20044:23616,LH00995:25:23T55JLT4:8:2382:8273:29599,LH00995:25:23T55JLT4:8:2402:14348:15741,LH00995:25:23T55JLT4:8:2471:17018:5428	.	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(96%)	CDS/splice-site	CDS/splice-site	0	9	+/+	-/-	.	9	ENST00000432334	ENST00000319349	translocation	0.0	0.0024443237370994023	0.0012221618685497012																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43533985	chr20:19889658-chr17:43533985	+,-	Arriba	1	0	1		1	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:low;duplicates(2)	low	translocation	CDS/splice-site	CDS/splice-site	1208	13334	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr20:19889658	chr17:43533985	chr20:19889658-chr17:43533985	.	.	low	1208	13334	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	ATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAG___TGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	MGARGLDKRGSFFK|*	LH00995:25:23T55JLT4:5:1336:27729:23055,LH00995:25:23T55JLT4:5:1336:27737:23041,LH00995:25:23T55JLT4:8:2219:51376:25592	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(72%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000255006	ENST00000319349	translocation	0.0	7.499062617172853e-05	3.749531308586427e-05																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43536479	chr20:19889658-chr17:43536479	+,-	Arriba	1	0	1		1	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:low;duplicates(1)	low	translocation	CDS/splice-site	CDS/splice-site	1208	9445	1.0	0.0	0.0	0.0									0	1	False	duplicates(1)		FAIL		False	chr20:19889658	chr17:43536479	chr20:19889658-chr17:43536479	.	.	low	1208	9445	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	EMTAWTMGARGLDKRGSFFK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:5:1403:47024:20799,LH00995:25:23T55JLT4:5:1403:47032:20813	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000255006	ENST00000319349	translocation	0.0	0.00010586491636671607	5.2932458183358036e-05																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	STAR-Fusion	1	0	15	0.0507	15	PASS		RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.4566	False	False	False	GT	AG	15																																												1	.	.	.	.	0.0507	PASS	.	.	.	RIN2--ETV4	15	LH00995:25:23T55JLT4:2:1229:47882:5414,LH00995:25:23T55JLT4:2:2105:20044:13191,LH00995:25:23T55JLT4:2:2202:16460:11299,LH00995:25:23T55JLT4:5:1246:10190:11958,LH00995:25:23T55JLT4:5:1296:27171:18249,LH00995:25:23T55JLT4:5:1301:31936:12406,LH00995:25:23T55JLT4:5:1301:47437:16329,LH00995:25:23T55JLT4:5:2487:46531:21122,LH00995:25:23T55JLT4:6:1469:3427:16750,LH00995:25:23T55JLT4:8:1175:26864:9057,LH00995:25:23T55JLT4:8:1297:31944:19734,LH00995:25:23T55JLT4:8:1448:50551:22593,LH00995:25:23T55JLT4:8:1465:19906:22845,LH00995:25:23T55JLT4:8:2147:4519:8805,LH00995:25:23T55JLT4:8:2436:46611:23223	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	.	.	AG	1.4566	chr17:43545668:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545668	15.0	0.0		15	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	STAR-Fusion	1	0	7	0.0236	7	FAIL	in-frame	RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8062	False	False	False	GT	AG	7		True	Read count too low: 7 < 8																																									0	ENST00000648440.1	1-57	ENST00000393664.6	61-1455	0.0236	FAIL	atgacagcttggaccatgggcgcccgcggtctggacaagcgaggaagtttctttaagAAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAGATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAGCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr20|+|[0]19889602-19889658[2]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]|[0]43544975-43545022[1]|[0]43545274-43545367[0]	MTAWTMGARGLDKRGSFFKKSPGNGSLREALIGPLGKLMDPGSLPPLDSEDLFQDLSHFQETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRKPPLPYHHGEQCLYSSAYDPPRQIAIKSPAPGALGQSPLQPFPRAEQRNFLRSSGTSQPHPGHGYLGEHSSVFQQPLDICHSFTSQGGGREPLPAPYQHQLSEPCPPYPQQSFKQEYHDPLYEQAGQPAVDQGGVNGHRYPGAGVVIKQEQTDFAYDSDVTGCASMYLHTEGFSGPSPGDGAMGYGYEKPLRPFPDDVCVVPEKFEGDIKQEGVGAFREGPPYQRRGALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPEALFSLAFPDNQRPALKAEFDRPVSEEDTVPLSHLDESPAYLPELAGPAQPFGPKGGYSY*	RIN2--ETV4	7	LH00995:25:23T55JLT4:2:1214:23854:6731,LH00995:25:23T55JLT4:2:1364:2343:19216,LH00995:25:23T55JLT4:5:1108:1696:17647,LH00995:25:23T55JLT4:5:1309:31426:27749,LH00995:25:23T55JLT4:5:2291:36734:1546,LH00995:25:23T55JLT4:5:2354:12261:9884,LH00995:25:23T55JLT4:6:2365:37712:13583	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	ETS_PEA3_N-PARTIAL|~61-339|5.9e-114^Ets|342-421|2.7e-38	INFRAME	AG	1.8892	chr17:43545367:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545367	7.0	0.0	Read count too low: 7 < 8	7	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43536479	chr20:19889658-chr17:43536479	+,-	STAR-Fusion	1	0	5	0.0169	5	FAIL	out-of-frame	RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8062	False	False	False	GT	AG	5		False	Read count too low: 5 < 8																																									0	ENST00000648440.1	1-57	ENST00000545954.5	86-1338	0.0169	FAIL	atgacagcttggaccatgggcgcccgcggtctggacaagcgaggaagtttctttaagCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr20|+|[0]19889602-19889658[2]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]	MTAWTMGARGLDKRGSFFKLRYQTVMSSLFLISIQKT*LSTAPPPGSRRSPRVPAQTRPCPAAGSRHSPTTMASSAFTPVPMTPPDKSPSSPLPLVPLDSRPYSPFPGQSNGIS*DPLAPPSPTLAMGTSGNIAPSSSSPWTFATPSHLREGAGNPSQPPTNTSCRSPAHPIPSRALSKNTMIPCMNRRASQPWTRVGSMGTGTQGRGW*SNRNRRTSPTTQMSPGAHQCTSTQRASLGPLQVTGPWAMAMRNLCDHSQMMSALSLRNLKETSSRKGSVHFERGRPTSAGVPCSCGNFWWPCWMTQQMPISLPGRAGEWSSSSLSLRRSPGSGASRRTGQP*ITTS*AARSDTIMRKASCRRWLVSVTCTSLCVSPRPSSLWPSRTISVQLSRLSLTGLSVRRTQSLCPTWMRAPPTSQSWLAPPSHLAPRVATLT	RIN2--ETV4	5	LH00995:25:23T55JLT4:2:1268:16606:29039,LH00995:25:23T55JLT4:2:1480:41159:21458,LH00995:25:23T55JLT4:5:1101:26233:7404,LH00995:25:23T55JLT4:5:1125:50697:7740,LH00995:25:23T55JLT4:6:2116:50292:27161	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	ETS_PEA3_N-PARTIAL|~86-300|6.4e-103^Ets|303-382|3.6e-38^HSF_DNA-bind|308-363|6.1e-05	FRAMESHIFT	AG	1.9086	chr17:43536479:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43536479	5.0	0.0	Read count too low: 5 < 8	5	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	STAR-Fusion	1	0	21	0.0711	21	PASS		RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.4566	False	False	False	GT	AG	21																																												1	.	.	.	.	0.0711	PASS	.	.	.	RIN2--ETV4	21	LH00995:25:23T55JLT4:2:1316:8936:10598,LH00995:25:23T55JLT4:2:1422:48351:21696,LH00995:25:23T55JLT4:2:2143:5134:18445,LH00995:25:23T55JLT4:2:2366:21225:27651,LH00995:25:23T55JLT4:5:1118:26419:23728,LH00995:25:23T55JLT4:5:1121:36086:1322,LH00995:25:23T55JLT4:5:1235:24186:2569,LH00995:25:23T55JLT4:5:1277:3411:19833,LH00995:25:23T55JLT4:5:1338:39161:1855,LH00995:25:23T55JLT4:5:1341:34048:20463,LH00995:25:23T55JLT4:5:2148:9203:4727,LH00995:25:23T55JLT4:5:2360:20343:7880,LH00995:25:23T55JLT4:5:2487:1930:18950,LH00995:25:23T55JLT4:6:1471:30326:3985,LH00995:25:23T55JLT4:6:2308:51401:17002,LH00995:25:23T55JLT4:6:2375:19057:2541,LH00995:25:23T55JLT4:6:2467:50333:5652,LH00995:25:23T55JLT4:6:2473:15497:10921,LH00995:25:23T55JLT4:8:1110:8386:27021,LH00995:25:23T55JLT4:8:1188:31135:19650,LH00995:25:23T55JLT4:8:1395:30318:24401	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	.	.	AG	1.4566	chr17:43545668:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545668	21.0	0.0		21	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	STAR-Fusion	1	0	9	0.0305	9	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8062	False	False	False	GT	AG	9		True																																										1	ENST00000648440.1	1-57	ENST00000393664.6	61-1455	0.0305	PASS	atgacagcttggaccatgggcgcccgcggtctggacaagcgaggaagtttctttaagAAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAGATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAGCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr20|+|[0]19889602-19889658[2]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]|[0]43544975-43545022[1]|[0]43545274-43545367[0]	MTAWTMGARGLDKRGSFFKKSPGNGSLREALIGPLGKLMDPGSLPPLDSEDLFQDLSHFQETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRKPPLPYHHGEQCLYSSAYDPPRQIAIKSPAPGALGQSPLQPFPRAEQRNFLRSSGTSQPHPGHGYLGEHSSVFQQPLDICHSFTSQGGGREPLPAPYQHQLSEPCPPYPQQSFKQEYHDPLYEQAGQPAVDQGGVNGHRYPGAGVVIKQEQTDFAYDSDVTGCASMYLHTEGFSGPSPGDGAMGYGYEKPLRPFPDDVCVVPEKFEGDIKQEGVGAFREGPPYQRRGALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPEALFSLAFPDNQRPALKAEFDRPVSEEDTVPLSHLDESPAYLPELAGPAQPFGPKGGYSY*	RIN2--ETV4	9	LH00995:25:23T55JLT4:2:1146:26896:6395,LH00995:25:23T55JLT4:5:1282:16776:17787,LH00995:25:23T55JLT4:5:2168:10093:10304,LH00995:25:23T55JLT4:5:2372:23660:22145,LH00995:25:23T55JLT4:6:1123:44492:3270,LH00995:25:23T55JLT4:6:1203:43481:13345,LH00995:25:23T55JLT4:6:2108:27875:27539,LH00995:25:23T55JLT4:6:2265:46757:3830,LH00995:25:23T55JLT4:8:2382:8273:29599	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	ETS_PEA3_N-PARTIAL|~61-339|5.9e-114^Ets|342-421|2.7e-38	INFRAME	AG	1.8892	chr17:43545367:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545367	9.0	0.0		9	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	Arriba	1	0	21		21	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	confidence:high;duplicates(8)	high	translocation	CDS/splice-site	5'UTR/splice-site	1208	382	8.0	0.0	0.0	0.0									3	18	True	duplicates(8)		PASS		False	chr20:19889658	chr17:43545668	chr20:19889658-chr17:43545668	.	.	high	1208	382	downstream	downstream	0		duplicates(8)	AGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|GTCTCGGCCCCCGCTTGGGGCCCCGGCCGTGCGGCCGGAGGGAGCGGCCGGATGGAGCGGAGGATGAAAGCCGGATACTTGGACCAGCAAGTGCCCTACACCTTCAGCAGC___AAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAG___ATCTCTTCCAGGATCTAAGT	RIN2	ETV4	ENSG00000132669	ENSG00000175832	SGASLGEMTAWTMGARGLDKRGSFFK|vsapawgpgraaggsgrmerrmkagyldqqvpytfsskspgngslrealigplgklMDPGSLPPLDSEDLFQDL	LH00995:25:23T55JLT4:2:1316:8936:10598,LH00995:25:23T55JLT4:2:1422:48351:21696,LH00995:25:23T55JLT4:2:2366:21225:27651,LH00995:25:23T55JLT4:5:1118:26419:23728,LH00995:25:23T55JLT4:5:1121:36086:1322,LH00995:25:23T55JLT4:5:1235:24186:2569,LH00995:25:23T55JLT4:5:1277:3411:19833,LH00995:25:23T55JLT4:5:1338:39161:1855,LH00995:25:23T55JLT4:5:1341:34048:20463,LH00995:25:23T55JLT4:5:2126:6250:25479,LH00995:25:23T55JLT4:5:2148:9203:4727,LH00995:25:23T55JLT4:5:2360:20343:7880,LH00995:25:23T55JLT4:6:1471:30326:3985,LH00995:25:23T55JLT4:6:1487:19647:10823,LH00995:25:23T55JLT4:6:2375:19057:2541,LH00995:25:23T55JLT4:6:2467:50333:5652,LH00995:25:23T55JLT4:6:2473:15497:10921,LH00995:25:23T55JLT4:8:1110:8386:27021,LH00995:25:23T55JLT4:8:1118:12925:15152,LH00995:25:23T55JLT4:8:1118:12933:15166,LH00995:25:23T55JLT4:8:1188:31135:19650,LH00995:25:23T55JLT4:8:1346:8613:20491,LH00995:25:23T55JLT4:8:1395:30318:24401,LH00995:25:23T55JLT4:8:2133:38473:16610,LH00995:25:23T55JLT4:8:2363:18337:21304,LH00995:25:23T55JLT4:2:2143:5134:18445,LH00995:25:23T55JLT4:5:2487:1930:18950,LH00995:25:23T55JLT4:6:2308:51401:17002,LH00995:25:23T55JLT4:8:1132:46725:19132	in-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(100%)	CDS/splice-site	5'UTR/splice-site	3	18	+/+	-/-	.	21	ENST00000255006	ENST00000586764	translocation	0.002477291494632535	0.045	0.023738645747316267																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	Arriba	1	0	9		9	PASS		RIN2--ETV4	ETV4--RIN2	confidence:medium;duplicates(11)	medium	translocation	CDS/splice-site	CDS/splice-site	1208	3673	11.0	0.0	0.0	0.0									0	9		duplicates(11)		FAIL		False	chr20:19889658	chr17:43545367	chr20:19889658-chr17:43545367	.	.	medium	1208	3673	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(11)	ATTCTGCTTACAAAG___GAGTCCCCGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|AAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAG___ATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAG___CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	.	LH00995:25:23T55JLT4:2:1146:26896:6395,LH00995:25:23T55JLT4:2:1146:26912:6395,LH00995:25:23T55JLT4:5:1282:16776:17787,LH00995:25:23T55JLT4:5:2168:10093:10304,LH00995:25:23T55JLT4:5:2345:28854:12924,LH00995:25:23T55JLT4:5:2372:23660:22145,LH00995:25:23T55JLT4:6:1123:44492:3270,LH00995:25:23T55JLT4:6:1123:44508:3270,LH00995:25:23T55JLT4:6:1183:48157:10458,LH00995:25:23T55JLT4:6:1203:43481:13345,LH00995:25:23T55JLT4:6:1334:28546:28478,LH00995:25:23T55JLT4:6:1334:28555:28492,LH00995:25:23T55JLT4:6:2108:27875:27539,LH00995:25:23T55JLT4:6:2265:46757:3830,LH00995:25:23T55JLT4:8:1228:38311:26867,LH00995:25:23T55JLT4:8:2133:41741:27175,LH00995:25:23T55JLT4:8:2352:20044:23616,LH00995:25:23T55JLT4:8:2382:8273:29599,LH00995:25:23T55JLT4:8:2402:14348:15741,LH00995:25:23T55JLT4:8:2471:17018:5428	.	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(96%)	CDS/splice-site	CDS/splice-site	0	9	+/+	-/-	.	9	ENST00000432334	ENST00000319349	translocation	0.0	0.0024443237370994023	0.0012221618685497012																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43533985	chr20:19889658-chr17:43533985	+,-	Arriba	1	0	1		1	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:low;duplicates(2)	low	translocation	CDS/splice-site	CDS/splice-site	1208	13334	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr20:19889658	chr17:43533985	chr20:19889658-chr17:43533985	.	.	low	1208	13334	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	ATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAG___TGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	MGARGLDKRGSFFK|*	LH00995:25:23T55JLT4:5:1336:27729:23055,LH00995:25:23T55JLT4:5:1336:27737:23041,LH00995:25:23T55JLT4:8:2219:51376:25592	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(72%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000255006	ENST00000319349	translocation	0.0	7.499062617172853e-05	3.749531308586427e-05																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43536479	chr20:19889658-chr17:43536479	+,-	Arriba	1	0	1		1	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:low;duplicates(1)	low	translocation	CDS/splice-site	CDS/splice-site	1208	9445	1.0	0.0	0.0	0.0									0	1	False	duplicates(1)		FAIL		False	chr20:19889658	chr17:43536479	chr20:19889658-chr17:43536479	.	.	low	1208	9445	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	EMTAWTMGARGLDKRGSFFK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:5:1403:47024:20799,LH00995:25:23T55JLT4:5:1403:47032:20813	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000255006	ENST00000319349	translocation	0.0	0.00010586491636671607	5.2932458183358036e-05																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	Arriba	1	0	15		15	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	confidence:high;duplicates(2)	high	translocation	CDS/splice-site	5'UTR/splice-site	1214	327	2.0	0.0	0.0	0.0									1	14	True	duplicates(2)		PASS		False	chr20:19889658	chr17:43545668	chr20:19889658-chr17:43545668	.	.	high	1214	327	downstream	downstream	0		duplicates(2)	AGTCCCCGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|GTCTCGGCCCCCGCTTGGGGCCCCGGCCGTGCGGCCGGAGGGAGCGGCCGGATGGAGCGGAGGATGAAAGCCGGATACTTGGACCAGCAAGTGCCCTACACCTTCAGCAGC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	SPACSGASLGEMTAWTMGARGLDKRGSFFK|vsapawgpgraaggsgrMERRMKAGYLDQQVPYTFS	LH00995:25:23T55JLT4:2:1229:47882:5414,LH00995:25:23T55JLT4:2:2202:16460:11299,LH00995:25:23T55JLT4:5:1246:10190:11958,LH00995:25:23T55JLT4:5:1296:27171:18249,LH00995:25:23T55JLT4:5:1301:31936:12406,LH00995:25:23T55JLT4:5:1301:47437:16329,LH00995:25:23T55JLT4:5:2487:46531:21122,LH00995:25:23T55JLT4:6:1469:3427:16750,LH00995:25:23T55JLT4:6:2382:13701:26418,LH00995:25:23T55JLT4:8:1175:26864:9057,LH00995:25:23T55JLT4:8:1297:31944:19734,LH00995:25:23T55JLT4:8:1448:50551:22593,LH00995:25:23T55JLT4:8:1465:19906:22845,LH00995:25:23T55JLT4:8:1465:19923:22845,LH00995:25:23T55JLT4:8:2147:4519:8805,LH00995:25:23T55JLT4:8:2436:46611:23223,LH00995:25:23T55JLT4:2:2105:20044:13191	in-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	14	+/+	-/-	.	15	ENST00000255006	ENST00000319349	translocation	0.0008230452674897119	0.04105571847507331	0.020939381871281512																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	Arriba	1	0	7		7	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	confidence:medium;duplicates(5)	medium	translocation	CDS/splice-site	CDS/splice-site	1214	2894	5.0	0.0	0.0	0.0									0	7	True	duplicates(5)		FAIL		False	chr20:19889658	chr17:43545367	chr20:19889658-chr17:43545367	.	.	medium	1214	2894	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(7.0<8.0)	duplicates(5)	GGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|AAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAG___ATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAG___CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCG	RIN2	ETV4	ENSG00000132669	ENSG00000175832	GARGLDKRGSFFK|KSPGNGSLREALIGPLGKLMDPGSLPPLDSEDLFQDLSHFQETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSP	LH00995:25:23T55JLT4:2:1214:23854:6731,LH00995:25:23T55JLT4:2:1364:2343:19216,LH00995:25:23T55JLT4:5:1108:1696:17647,LH00995:25:23T55JLT4:5:1309:31426:27749,LH00995:25:23T55JLT4:5:1469:20230:14746,LH00995:25:23T55JLT4:5:2291:36734:1546,LH00995:25:23T55JLT4:5:2354:12261:9884,LH00995:25:23T55JLT4:6:1301:9632:1126,LH00995:25:23T55JLT4:6:1301:9640:1140,LH00995:25:23T55JLT4:6:2140:26516:6072,LH00995:25:23T55JLT4:6:2365:37712:13583,LH00995:25:23T55JLT4:8:1115:25270:8959	in-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(96%)	CDS/splice-site	CDS/splice-site	0	7	+/+	-/-	.	7	ENST00000255006	ENST00000319349	translocation	0.0	0.002412961047914512	0.001206480523957256																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43536479	chr20:19889658-chr17:43536479	+,-	Arriba	1	0	5		5	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:medium;duplicates(1)	medium	translocation	CDS/splice-site	CDS/splice-site	1214	10369	1.0	0.0	0.0	0.0									0	5	False	duplicates(1)		FAIL		False	chr20:19889658	chr17:43536479	chr20:19889658-chr17:43536479	.	.	medium	1214	10369	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(1)	ATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGG	RIN2	ETV4	ENSG00000132669	ENSG00000175832	MTAWTMGARGLDKRGSFFK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:2:1268:16606:29039,LH00995:25:23T55JLT4:2:1480:41159:21458,LH00995:25:23T55JLT4:5:1101:26233:7404,LH00995:25:23T55JLT4:5:1125:50697:7740,LH00995:25:23T55JLT4:5:1237:44929:10388,LH00995:25:23T55JLT4:6:2116:50292:27161	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	0	5	+/+	-/-	.	5	ENST00000255006	ENST00000319349	translocation	0.0	0.0004819741661846925	0.00024098708309234625																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43533985	chr20:19889658-chr17:43533985	+,-	Arriba	1	0	1		1	PASS	out-of-frame	RIN2--ETV4	ETV4--RIN2	confidence:low;duplicates(2)	low	translocation	CDS/splice-site	CDS/splice-site	1214	15974	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr20:19889658	chr17:43533985	chr20:19889658-chr17:43533985	.	.	low	1214	15974	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	GGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCC	RIN2	ETV4	ENSG00000132669	ENSG00000175832	GARGLDKRGSFFK|*	LH00995:25:23T55JLT4:5:1116:28247:15657,LH00995:25:23T55JLT4:5:1212:24032:9421,LH00995:25:23T55JLT4:8:1188:2019:24961	out-of-frame	|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(72%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000255006	ENST00000319349	translocation	0.0	6.259780907668232e-05	3.129890453834116e-05																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	STAR-Fusion	1	0	21	0.0711	21	PASS		RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.4566	False	False	False	GT	AG	21																																												1	.	.	.	.	0.0711	PASS	.	.	.	RIN2--ETV4	21	LH00995:25:23T55JLT4:2:1316:8936:10598,LH00995:25:23T55JLT4:2:1422:48351:21696,LH00995:25:23T55JLT4:2:2143:5134:18445,LH00995:25:23T55JLT4:2:2366:21225:27651,LH00995:25:23T55JLT4:5:1118:26419:23728,LH00995:25:23T55JLT4:5:1121:36086:1322,LH00995:25:23T55JLT4:5:1235:24186:2569,LH00995:25:23T55JLT4:5:1277:3411:19833,LH00995:25:23T55JLT4:5:1338:39161:1855,LH00995:25:23T55JLT4:5:1341:34048:20463,LH00995:25:23T55JLT4:5:2148:9203:4727,LH00995:25:23T55JLT4:5:2360:20343:7880,LH00995:25:23T55JLT4:5:2487:1930:18950,LH00995:25:23T55JLT4:6:1471:30326:3985,LH00995:25:23T55JLT4:6:2308:51401:17002,LH00995:25:23T55JLT4:6:2375:19057:2541,LH00995:25:23T55JLT4:6:2467:50333:5652,LH00995:25:23T55JLT4:6:2473:15497:10921,LH00995:25:23T55JLT4:8:1110:8386:27021,LH00995:25:23T55JLT4:8:1188:31135:19650,LH00995:25:23T55JLT4:8:1395:30318:24401	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	.	.	AG	1.4566	chr17:43545668:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545668	21.0	0.0		21	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	STAR-Fusion	1	0	9	0.0305	9	PASS	in-frame	RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8062	False	False	False	GT	AG	9		True																																										1	ENST00000648440.1	1-57	ENST00000393664.6	61-1455	0.0305	PASS	atgacagcttggaccatgggcgcccgcggtctggacaagcgaggaagtttctttaagAAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAGATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAGCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr20|+|[0]19889602-19889658[2]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]|[0]43544975-43545022[1]|[0]43545274-43545367[0]	MTAWTMGARGLDKRGSFFKKSPGNGSLREALIGPLGKLMDPGSLPPLDSEDLFQDLSHFQETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRKPPLPYHHGEQCLYSSAYDPPRQIAIKSPAPGALGQSPLQPFPRAEQRNFLRSSGTSQPHPGHGYLGEHSSVFQQPLDICHSFTSQGGGREPLPAPYQHQLSEPCPPYPQQSFKQEYHDPLYEQAGQPAVDQGGVNGHRYPGAGVVIKQEQTDFAYDSDVTGCASMYLHTEGFSGPSPGDGAMGYGYEKPLRPFPDDVCVVPEKFEGDIKQEGVGAFREGPPYQRRGALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPEALFSLAFPDNQRPALKAEFDRPVSEEDTVPLSHLDESPAYLPELAGPAQPFGPKGGYSY*	RIN2--ETV4	9	LH00995:25:23T55JLT4:2:1146:26896:6395,LH00995:25:23T55JLT4:5:1282:16776:17787,LH00995:25:23T55JLT4:5:2168:10093:10304,LH00995:25:23T55JLT4:5:2372:23660:22145,LH00995:25:23T55JLT4:6:1123:44492:3270,LH00995:25:23T55JLT4:6:1203:43481:13345,LH00995:25:23T55JLT4:6:2108:27875:27539,LH00995:25:23T55JLT4:6:2265:46757:3830,LH00995:25:23T55JLT4:8:2382:8273:29599	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	ETS_PEA3_N-PARTIAL|~61-339|5.9e-114^Ets|342-421|2.7e-38	INFRAME	AG	1.8892	chr17:43545367:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545367	9.0	0.0		9	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545668	chr20:19889658-chr17:43545668	+,-	STAR-Fusion	1	0	15	0.0507	15	PASS		RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.4566	False	False	False	GT	AG	15																																												1	.	.	.	.	0.0507	PASS	.	.	.	RIN2--ETV4	15	LH00995:25:23T55JLT4:2:1229:47882:5414,LH00995:25:23T55JLT4:2:2105:20044:13191,LH00995:25:23T55JLT4:2:2202:16460:11299,LH00995:25:23T55JLT4:5:1246:10190:11958,LH00995:25:23T55JLT4:5:1296:27171:18249,LH00995:25:23T55JLT4:5:1301:31936:12406,LH00995:25:23T55JLT4:5:1301:47437:16329,LH00995:25:23T55JLT4:5:2487:46531:21122,LH00995:25:23T55JLT4:6:1469:3427:16750,LH00995:25:23T55JLT4:8:1175:26864:9057,LH00995:25:23T55JLT4:8:1297:31944:19734,LH00995:25:23T55JLT4:8:1448:50551:22593,LH00995:25:23T55JLT4:8:1465:19906:22845,LH00995:25:23T55JLT4:8:2147:4519:8805,LH00995:25:23T55JLT4:8:2436:46611:23223	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	.	.	AG	1.4566	chr17:43545668:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545668	15.0	0.0		15	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43545367	chr20:19889658-chr17:43545367	+,-	STAR-Fusion	1	0	7	0.0236	7	FAIL	in-frame	RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8062	False	False	False	GT	AG	7		True	Read count too low: 7 < 8																																									0	ENST00000648440.1	1-57	ENST00000393664.6	61-1455	0.0236	FAIL	atgacagcttggaccatgggcgcccgcggtctggacaagcgaggaagtttctttaagAAATCGCCCGGAAATGGGAGCTTGCGCGAAGCGCTGATCGGCCCGCTGGGGAAGCTCATGGACCCGGGCTCCCTGCCGCCCCTCGACTCTGAAGATCTCTTCCAGGATCTAAGTCACTTCCAGGAGACGTGGCTCGCTGAAGCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr20|+|[0]19889602-19889658[2]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]|[0]43544975-43545022[1]|[0]43545274-43545367[0]	MTAWTMGARGLDKRGSFFKKSPGNGSLREALIGPLGKLMDPGSLPPLDSEDLFQDLSHFQETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRKPPLPYHHGEQCLYSSAYDPPRQIAIKSPAPGALGQSPLQPFPRAEQRNFLRSSGTSQPHPGHGYLGEHSSVFQQPLDICHSFTSQGGGREPLPAPYQHQLSEPCPPYPQQSFKQEYHDPLYEQAGQPAVDQGGVNGHRYPGAGVVIKQEQTDFAYDSDVTGCASMYLHTEGFSGPSPGDGAMGYGYEKPLRPFPDDVCVVPEKFEGDIKQEGVGAFREGPPYQRRGALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPEALFSLAFPDNQRPALKAEFDRPVSEEDTVPLSHLDESPAYLPELAGPAQPFGPKGGYSY*	RIN2--ETV4	7	LH00995:25:23T55JLT4:2:1214:23854:6731,LH00995:25:23T55JLT4:2:1364:2343:19216,LH00995:25:23T55JLT4:5:1108:1696:17647,LH00995:25:23T55JLT4:5:1309:31426:27749,LH00995:25:23T55JLT4:5:2291:36734:1546,LH00995:25:23T55JLT4:5:2354:12261:9884,LH00995:25:23T55JLT4:6:2365:37712:13583	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	ETS_PEA3_N-PARTIAL|~61-339|5.9e-114^Ets|342-421|2.7e-38	INFRAME	AG	1.8892	chr17:43545367:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43545367	7.0	0.0	Read count too low: 7 < 8	7	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--RIN2	RIN2--ETV4	ETV4--RIN2	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr20	chr17	RIN2	ETV4	19889658	43536479	chr20:19889658-chr17:43536479	+,-	STAR-Fusion	1	0	5	0.0169	5	FAIL	out-of-frame	RIN2--ETV4	ETV4--RIN2	"[""INTERCHROMOSOMAL[chr20--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8062	False	False	False	GT	AG	5		False	Read count too low: 5 < 8																																									0	ENST00000648440.1	1-57	ENST00000545954.5	86-1338	0.0169	FAIL	atgacagcttggaccatgggcgcccgcggtctggacaagcgaggaagtttctttaagCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr20|+|[0]19889602-19889658[2]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]	MTAWTMGARGLDKRGSFFKLRYQTVMSSLFLISIQKT*LSTAPPPGSRRSPRVPAQTRPCPAAGSRHSPTTMASSAFTPVPMTPPDKSPSSPLPLVPLDSRPYSPFPGQSNGIS*DPLAPPSPTLAMGTSGNIAPSSSSPWTFATPSHLREGAGNPSQPPTNTSCRSPAHPIPSRALSKNTMIPCMNRRASQPWTRVGSMGTGTQGRGW*SNRNRRTSPTTQMSPGAHQCTSTQRASLGPLQVTGPWAMAMRNLCDHSQMMSALSLRNLKETSSRKGSVHFERGRPTSAGVPCSCGNFWWPCWMTQQMPISLPGRAGEWSSSSLSLRRSPGSGASRRTGQP*ITTS*AARSDTIMRKASCRRWLVSVTCTSLCVSPRPSSLWPSRTISVQLSRLSLTGLSVRRTQSLCPTWMRAPPTSQSWLAPPSHLAPRVATLT	RIN2--ETV4	5	LH00995:25:23T55JLT4:2:1268:16606:29039,LH00995:25:23T55JLT4:2:1480:41159:21458,LH00995:25:23T55JLT4:5:1101:26233:7404,LH00995:25:23T55JLT4:5:1125:50697:7740,LH00995:25:23T55JLT4:6:2116:50292:27161	YES_LDAS	GT	1.8062	chr20:19889658:+	RIN2^ENSG00000132669.14	.	ETS_PEA3_N-PARTIAL|~86-300|6.4e-103^Ets|303-382|3.6e-38^HSF_DNA-bind|308-363|6.1e-05	FRAMESHIFT	AG	1.9086	chr17:43536479:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr20--chr17]""]"		False	chr20:19889658-chr17:43536479	5.0	0.0	Read count too low: 5 < 8	5	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	Arriba	1	0	10		10	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	confidence:medium;duplicates(5)	medium	translocation	CDS/splice-site	CDS/splice-site	5602	10369	5.0	0.0	0.0	0.0									2	8	False	duplicates(5)		FAIL		False	chr19:1020772	chr17:43536479	chr19:1020772-chr17:43536479	.	.	medium	5602	10369	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(5)	CCCCCAATCTCAACCCCAACCCCCTCATCAACGTGCGCGACCGGCTCTTCCACGCGCTGTTCTTCAAGATGGCTGTCACCTATTCGCGGCTCTTCCCGCCCGCCTTCCGCCGTCTCTTCGAGTTCTTCGTGCTGCTCAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAA	TMEM259	ETV4	ENSG00000182087	ENSG00000175832	PNLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:2:2180:49605:11117,LH00995:25:23T55JLT4:2:2191:3225:28366,LH00995:25:23T55JLT4:5:1266:5822:10416,LH00995:25:23T55JLT4:5:1307:12876:24344,LH00995:25:23T55JLT4:5:1394:3799:29025,LH00995:25:23T55JLT4:6:1278:11177:27679,LH00995:25:23T55JLT4:6:1439:49888:7320,LH00995:25:23T55JLT4:6:1439:49896:7306,LH00995:25:23T55JLT4:6:1454:9810:16512,LH00995:25:23T55JLT4:8:1256:39217:23588,LH00995:25:23T55JLT4:8:1320:5571:17044,LH00995:25:23T55JLT4:8:1344:50001:26488,LH00995:25:23T55JLT4:8:1449:23895:10304,LH00995:25:23T55JLT4:2:2146:16743:22859,LH00995:25:23T55JLT4:8:2474:30488:27273	out-of-frame	Tumour-associated_protein(11%)|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	2	8	-/-	-/-	.	10	ENST00000593068	ENST00000319349	translocation	0.00035688793718772306	0.0007709357232340753	0.0005639118302108992																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	Arriba	1	0	9		9	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	confidence:medium;duplicates(2)	medium	translocation	CDS/splice-site	CDS/splice-site	5396	9445	2.0	0.0	0.0	0.0									2	7	False	duplicates(2)		FAIL		False	chr19:1020772	chr17:43536479	chr19:1020772-chr17:43536479	.	.	medium	5396	9445	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(2)	CTGTCACCTATTCGCGGCTCTTCCCGCCCGCCTTCCGCCGTCTCTTCGAGTTCTTCGTGCTGCTCAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAG	TMEM259	ETV4	ENSG00000182087	ENSG00000175832	VTYSRLFPPAFRRLFEFFVLLK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:5:1173:12447:2247,LH00995:25:23T55JLT4:5:1173:12455:2261,LH00995:25:23T55JLT4:5:1301:50851:6829,LH00995:25:23T55JLT4:6:1363:3152:25634,LH00995:25:23T55JLT4:6:1363:3160:25648,LH00995:25:23T55JLT4:6:1394:8402:25283,LH00995:25:23T55JLT4:6:2150:38295:10753,LH00995:25:23T55JLT4:8:2265:14672:26755,LH00995:25:23T55JLT4:8:2384:39516:19258,LH00995:25:23T55JLT4:2:2208:6129:22299,LH00995:25:23T55JLT4:6:2441:44071:7165	out-of-frame	Tumour-associated_protein(11%)|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	2	7	-/-	-/-	.	9	ENST00000593068	ENST00000319349	translocation	0.0003705075954057058	0.0007405840033855269	0.0005555457993956163																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	STAR-Fusion	1	0	10	0.0338	10	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	"[""INTERCHROMOSOMAL[chr19--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.9086	False	False	False	GT	AG	10		False																																										1	ENST00000593068.7	1-225	ENST00000545954.5	86-1338	0.0338	PASS	atgtcggagcacgtggagcccgcagctccggggcccgggcccaacggcggcggcggcggcccggcccccgcgcgcgggcctcgcacccccaatctcaaccccaaccccctcatcaacgtgcgcgaccggctcttccacgcgctgttcttcaagatggctgtcacctattcgcggctcttcccgcccgccttccgccgtctcttcgagttcttcgtgctgctcaagCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr19|-|[2]1020772-1020996[0]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]	MSEHVEPAAPGPGPNGGGGGPAPARGPRTPNLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLKLRYQTVMSSLFLISIQKT*LSTAPPPGSRRSPRVPAQTRPCPAAGSRHSPTTMASSAFTPVPMTPPDKSPSSPLPLVPLDSRPYSPFPGQSNGIS*DPLAPPSPTLAMGTSGNIAPSSSSPWTFATPSHLREGAGNPSQPPTNTSCRSPAHPIPSRALSKNTMIPCMNRRASQPWTRVGSMGTGTQGRGW*SNRNRRTSPTTQMSPGAHQCTSTQRASLGPLQVTGPWAMAMRNLCDHSQMMSALSLRNLKETSSRKGSVHFERGRPTSAGVPCSCGNFWWPCWMTQQMPISLPGRAGEWSSSSLSLRRSPGSGASRRTGQP*ITTS*AARSDTIMRKASCRRWLVSVTCTSLCVSPRPSSLWPSRTISVQLSRLSLTGLSVRRTQSLCPTWMRAPPTSQSWLAPPSHLAPRVATLT	TMEM259--ETV4	10	LH00995:25:23T55JLT4:2:2146:16743:22859,LH00995:25:23T55JLT4:2:2180:49605:11117,LH00995:25:23T55JLT4:2:2191:3225:28366,LH00995:25:23T55JLT4:5:1266:5822:10416,LH00995:25:23T55JLT4:6:1278:11177:27679,LH00995:25:23T55JLT4:6:1439:49888:7320,LH00995:25:23T55JLT4:8:1256:39217:23588,LH00995:25:23T55JLT4:8:1320:5571:17044,LH00995:25:23T55JLT4:8:1344:50001:26488,LH00995:25:23T55JLT4:8:2474:30488:27273	YES_LDAS	GT	1.9329	chr19:1020772:-	TMEM259^ENSG00000182087.14	Membralin-PARTIAL|35-225~|3.1e-172	ETS_PEA3_N-PARTIAL|~86-300|6.4e-103^Ets|303-382|3.6e-38^HSF_DNA-bind|308-363|6.1e-05	FRAMESHIFT	AG	1.9086	chr17:43536479:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr19--chr17]""]"		False	chr19:1020772-chr17:43536479	10.0	0.0		10	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	STAR-Fusion	1	0	9	0.0305	9	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	"[""INTERCHROMOSOMAL[chr19--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.9086	False	False	False	GT	AG	9		False																																										1	ENST00000593068.7	1-225	ENST00000545954.5	86-1338	0.0305	PASS	atgtcggagcacgtggagcccgcagctccggggcccgggcccaacggcggcggcggcggcccggcccccgcgcgcgggcctcgcacccccaatctcaaccccaaccccctcatcaacgtgcgcgaccggctcttccacgcgctgttcttcaagatggctgtcacctattcgcggctcttcccgcccgccttccgccgtctcttcgagttcttcgtgctgctcaagCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr19|-|[2]1020772-1020996[0]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]	MSEHVEPAAPGPGPNGGGGGPAPARGPRTPNLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLKLRYQTVMSSLFLISIQKT*LSTAPPPGSRRSPRVPAQTRPCPAAGSRHSPTTMASSAFTPVPMTPPDKSPSSPLPLVPLDSRPYSPFPGQSNGIS*DPLAPPSPTLAMGTSGNIAPSSSSPWTFATPSHLREGAGNPSQPPTNTSCRSPAHPIPSRALSKNTMIPCMNRRASQPWTRVGSMGTGTQGRGW*SNRNRRTSPTTQMSPGAHQCTSTQRASLGPLQVTGPWAMAMRNLCDHSQMMSALSLRNLKETSSRKGSVHFERGRPTSAGVPCSCGNFWWPCWMTQQMPISLPGRAGEWSSSSLSLRRSPGSGASRRTGQP*ITTS*AARSDTIMRKASCRRWLVSVTCTSLCVSPRPSSLWPSRTISVQLSRLSLTGLSVRRTQSLCPTWMRAPPTSQSWLAPPSHLAPRVATLT	TMEM259--ETV4	9	LH00995:25:23T55JLT4:2:2208:6129:22299,LH00995:25:23T55JLT4:5:1173:12447:2247,LH00995:25:23T55JLT4:5:1301:50851:6829,LH00995:25:23T55JLT4:6:1363:3152:25634,LH00995:25:23T55JLT4:6:1394:8402:25283,LH00995:25:23T55JLT4:6:2150:38295:10753,LH00995:25:23T55JLT4:6:2441:44071:7165,LH00995:25:23T55JLT4:8:2265:14672:26755,LH00995:25:23T55JLT4:8:2384:39516:19258	YES_LDAS	GT	1.9329	chr19:1020772:-	TMEM259^ENSG00000182087.14	Membralin-PARTIAL|35-225~|3.1e-172	ETS_PEA3_N-PARTIAL|~86-300|6.4e-103^Ets|303-382|3.6e-38^HSF_DNA-bind|308-363|6.1e-05	FRAMESHIFT	AG	1.9086	chr17:43536479:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr19--chr17]""]"		False	chr19:1020772-chr17:43536479	9.0	0.0		9	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	Arriba	1	0	9		9	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	confidence:medium;duplicates(2)	medium	translocation	CDS/splice-site	CDS/splice-site	5396	9445	2.0	0.0	0.0	0.0									2	7	False	duplicates(2)		FAIL		False	chr19:1020772	chr17:43536479	chr19:1020772-chr17:43536479	.	.	medium	5396	9445	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(2)	CTGTCACCTATTCGCGGCTCTTCCCGCCCGCCTTCCGCCGTCTCTTCGAGTTCTTCGTGCTGCTCAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAG	TMEM259	ETV4	ENSG00000182087	ENSG00000175832	VTYSRLFPPAFRRLFEFFVLLK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:5:1173:12447:2247,LH00995:25:23T55JLT4:5:1173:12455:2261,LH00995:25:23T55JLT4:5:1301:50851:6829,LH00995:25:23T55JLT4:6:1363:3152:25634,LH00995:25:23T55JLT4:6:1363:3160:25648,LH00995:25:23T55JLT4:6:1394:8402:25283,LH00995:25:23T55JLT4:6:2150:38295:10753,LH00995:25:23T55JLT4:8:2265:14672:26755,LH00995:25:23T55JLT4:8:2384:39516:19258,LH00995:25:23T55JLT4:2:2208:6129:22299,LH00995:25:23T55JLT4:6:2441:44071:7165	out-of-frame	Tumour-associated_protein(11%)|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	2	7	-/-	-/-	.	9	ENST00000593068	ENST00000319349	translocation	0.0003705075954057058	0.0007405840033855269	0.0005555457993956163																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	Arriba	1	0	10		10	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	confidence:medium;duplicates(5)	medium	translocation	CDS/splice-site	CDS/splice-site	5602	10369	5.0	0.0	0.0	0.0									2	8	False	duplicates(5)		FAIL		False	chr19:1020772	chr17:43536479	chr19:1020772-chr17:43536479	.	.	medium	5602	10369	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(5)	CCCCCAATCTCAACCCCAACCCCCTCATCAACGTGCGCGACCGGCTCTTCCACGCGCTGTTCTTCAAGATGGCTGTCACCTATTCGCGGCTCTTCCCGCCCGCCTTCCGCCGTCTCTTCGAGTTCTTCGTGCTGCTCAAG|CTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACC___TAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAA	TMEM259	ETV4	ENSG00000182087	ENSG00000175832	PNLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLK|lryqtvmsslflisiqkt*	LH00995:25:23T55JLT4:2:2180:49605:11117,LH00995:25:23T55JLT4:2:2191:3225:28366,LH00995:25:23T55JLT4:5:1266:5822:10416,LH00995:25:23T55JLT4:5:1307:12876:24344,LH00995:25:23T55JLT4:5:1394:3799:29025,LH00995:25:23T55JLT4:6:1278:11177:27679,LH00995:25:23T55JLT4:6:1439:49888:7320,LH00995:25:23T55JLT4:6:1439:49896:7306,LH00995:25:23T55JLT4:6:1454:9810:16512,LH00995:25:23T55JLT4:8:1256:39217:23588,LH00995:25:23T55JLT4:8:1320:5571:17044,LH00995:25:23T55JLT4:8:1344:50001:26488,LH00995:25:23T55JLT4:8:1449:23895:10304,LH00995:25:23T55JLT4:2:2146:16743:22859,LH00995:25:23T55JLT4:8:2474:30488:27273	out-of-frame	Tumour-associated_protein(11%)|Ets-domain(100%),PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(82%)	CDS/splice-site	CDS/splice-site	2	8	-/-	-/-	.	10	ENST00000593068	ENST00000319349	translocation	0.00035688793718772306	0.0007709357232340753	0.0005639118302108992																																						1173_NWE	Arriba
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	STAR-Fusion	1	0	9	0.0305	9	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	"[""INTERCHROMOSOMAL[chr19--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.9086	False	False	False	GT	AG	9		False																																										1	ENST00000593068.7	1-225	ENST00000545954.5	86-1338	0.0305	PASS	atgtcggagcacgtggagcccgcagctccggggcccgggcccaacggcggcggcggcggcccggcccccgcgcgcgggcctcgcacccccaatctcaaccccaaccccctcatcaacgtgcgcgaccggctcttccacgcgctgttcttcaagatggctgtcacctattcgcggctcttcccgcccgccttccgccgtctcttcgagttcttcgtgctgctcaagCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr19|-|[2]1020772-1020996[0]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]	MSEHVEPAAPGPGPNGGGGGPAPARGPRTPNLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLKLRYQTVMSSLFLISIQKT*LSTAPPPGSRRSPRVPAQTRPCPAAGSRHSPTTMASSAFTPVPMTPPDKSPSSPLPLVPLDSRPYSPFPGQSNGIS*DPLAPPSPTLAMGTSGNIAPSSSSPWTFATPSHLREGAGNPSQPPTNTSCRSPAHPIPSRALSKNTMIPCMNRRASQPWTRVGSMGTGTQGRGW*SNRNRRTSPTTQMSPGAHQCTSTQRASLGPLQVTGPWAMAMRNLCDHSQMMSALSLRNLKETSSRKGSVHFERGRPTSAGVPCSCGNFWWPCWMTQQMPISLPGRAGEWSSSSLSLRRSPGSGASRRTGQP*ITTS*AARSDTIMRKASCRRWLVSVTCTSLCVSPRPSSLWPSRTISVQLSRLSLTGLSVRRTQSLCPTWMRAPPTSQSWLAPPSHLAPRVATLT	TMEM259--ETV4	9	LH00995:25:23T55JLT4:2:2208:6129:22299,LH00995:25:23T55JLT4:5:1173:12447:2247,LH00995:25:23T55JLT4:5:1301:50851:6829,LH00995:25:23T55JLT4:6:1363:3152:25634,LH00995:25:23T55JLT4:6:1394:8402:25283,LH00995:25:23T55JLT4:6:2150:38295:10753,LH00995:25:23T55JLT4:6:2441:44071:7165,LH00995:25:23T55JLT4:8:2265:14672:26755,LH00995:25:23T55JLT4:8:2384:39516:19258	YES_LDAS	GT	1.9329	chr19:1020772:-	TMEM259^ENSG00000182087.14	Membralin-PARTIAL|35-225~|3.1e-172	ETS_PEA3_N-PARTIAL|~86-300|6.4e-103^Ets|303-382|3.6e-38^HSF_DNA-bind|308-363|6.1e-05	FRAMESHIFT	AG	1.9086	chr17:43536479:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr19--chr17]""]"		False	chr19:1020772-chr17:43536479	9.0	0.0		9	1173_NWE	STAR-Fusion
fp_audit	1173_NWE	fusion	ETV4--TMEM259	TMEM259--ETV4	ETV4--TMEM259	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_NWE	altera_exact	1173	clinical	patient	ovary	Ovarian				68	unknown			False	1173_NWE_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		15.00	35.00	58.41			AIH_Ext12_RNA	F01		False		dev_rna_exp0016_lib_s06	200.00		91.75	dev_rna_exp0016	F01		False		1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr19	chr17	TMEM259	ETV4	1020772	43536479	chr19:1020772-chr17:43536479	-,-	STAR-Fusion	1	0	10	0.0338	10	PASS	out-of-frame	TMEM259--ETV4	ETV4--TMEM259	"[""INTERCHROMOSOMAL[chr19--chr17]""]"											ONLY_REF_SPLICE	YES_LDAS	1.9086	False	False	False	GT	AG	10		False																																										1	ENST00000593068.7	1-225	ENST00000545954.5	86-1338	0.0338	PASS	atgtcggagcacgtggagcccgcagctccggggcccgggcccaacggcggcggcggcggcccggcccccgcgcgcgggcctcgcacccccaatctcaaccccaaccccctcatcaacgtgcgcgaccggctcttccacgcgctgttcttcaagatggctgtcacctattcgcggctcttcccgcccgccttccgccgtctcttcgagttcttcgtgctgctcaagCTCAGGTACCAGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACCTAGCTTTCCACAGCCCCACCACCAGGATCAAGAAGGAGCCCCAGAGTCCCCGCACAGACCCGGCCCTGTCCTGCAGCAGGAAGCCGCCACTCCCCTACCACCATGGCGAGCAGTGCCTTTACTCCAGTGCCTATGACCCCCCCAGACAAATCGCCATCAAGTCCCCTGCCCCTGGTGCCCTTGGACAGTCGCCCCTACAGCCCTTTCCCCGGGCAGAGCAACGGAATTTCCTGAGATCCTCTGGCACCTCCCAGCCCCACCCTGGCCATGGGTACCTCGGGGAACATAGCTCCGTCTTCCAGCAGCCCCTGGACATTTGCCACTCCTTCACATCTCAGGGAGGGGGCCGGGAACCCCTCCCAGCCCCCTACCAACACCAGCTGTCGGAGCCCTGCCCACCCTATCCCCAGCAGAGCTTTAAGCAAGAATACCATGATCCCCTGTATGAACAGGCGGGCCAGCCAGCCGTGGACCAGGGTGGGGTCAATGGGCACAGGTACCCAGGGGCGGGGGTGGTGATCAAACAGGAACAGACGGACTTCGCCTACGACTCAGATGTCACCGGGTGCGCATCAATGTACCTCCACACAGAGGGCTTCTCTGGGCCCTCTCCAGGTGACGGGGCCATGGGCTATGGCTATGAGAAACCTCTGCGACCATTCCCAGATGATGTCTGCGTTGTCCCTGAGAAATTTGAAGGAGACATCAAGCAGGAAGGGGTCGGTGCATTTCGAGAGGGGCCGCCCTACCAGCGCCGGGGTGCCCTGCAGCTGTGGCAATTTCTGGTGGCCTTGCTGGATGACCCAACAAATGCCCATTTCATTGCCTGGACGGGCCGGGGAATGGAGTTCAAGCTCATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAGCCATGAATTACGACAAGCTGAGCCGCTCGCTCCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGTGAGCGTTACGTGTACAAGTTTGTGTGTGAGCCCGAGGCCCTCTTCTCTTTGGCCTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCTGAGTTTGACCGGCCTGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGCCCCGCCTACCTCCCAGAGCTGGCTGGCCCCGCCCAGCCATTTGGCCCCAAGGGTGGCTACTCTTACTAG	chr19|-|[2]1020772-1020996[0]<==>chr17|-|[2]43528519-43528743[0]|[2]43529135-43529236[0]|[2]43529504-43529676[1]|[0]43529884-43529952[1]|[0]43530107-43530181[1]|[0]43532674-43532939[2]|[1]43533187-43533348[2]|[1]43533859-43533985[1]|[0]43536426-43536479[1]	MSEHVEPAAPGPGPNGGGGGPAPARGPRTPNLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLKLRYQTVMSSLFLISIQKT*LSTAPPPGSRRSPRVPAQTRPCPAAGSRHSPTTMASSAFTPVPMTPPDKSPSSPLPLVPLDSRPYSPFPGQSNGIS*DPLAPPSPTLAMGTSGNIAPSSSSPWTFATPSHLREGAGNPSQPPTNTSCRSPAHPIPSRALSKNTMIPCMNRRASQPWTRVGSMGTGTQGRGW*SNRNRRTSPTTQMSPGAHQCTSTQRASLGPLQVTGPWAMAMRNLCDHSQMMSALSLRNLKETSSRKGSVHFERGRPTSAGVPCSCGNFWWPCWMTQQMPISLPGRAGEWSSSSLSLRRSPGSGASRRTGQP*ITTS*AARSDTIMRKASCRRWLVSVTCTSLCVSPRPSSLWPSRTISVQLSRLSLTGLSVRRTQSLCPTWMRAPPTSQSWLAPPSHLAPRVATLT	TMEM259--ETV4	10	LH00995:25:23T55JLT4:2:2146:16743:22859,LH00995:25:23T55JLT4:2:2180:49605:11117,LH00995:25:23T55JLT4:2:2191:3225:28366,LH00995:25:23T55JLT4:5:1266:5822:10416,LH00995:25:23T55JLT4:6:1278:11177:27679,LH00995:25:23T55JLT4:6:1439:49888:7320,LH00995:25:23T55JLT4:8:1256:39217:23588,LH00995:25:23T55JLT4:8:1320:5571:17044,LH00995:25:23T55JLT4:8:1344:50001:26488,LH00995:25:23T55JLT4:8:2474:30488:27273	YES_LDAS	GT	1.9329	chr19:1020772:-	TMEM259^ENSG00000182087.14	Membralin-PARTIAL|35-225~|3.1e-172	ETS_PEA3_N-PARTIAL|~86-300|6.4e-103^Ets|303-382|3.6e-38^HSF_DNA-bind|308-363|6.1e-05	FRAMESHIFT	AG	1.9086	chr17:43536479:-	ETV4^ENSG00000175832.13	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr19--chr17]""]"		False	chr19:1020772-chr17:43536479	10.0	0.0		10	1173_NWE	STAR-Fusion
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	Arriba	1	0	29		29	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	confidence:high;duplicates(23)	high	duplication	CDS/splice-site	CDS/splice-site	256	882	23.0	0.0	0.0	0.0									8	21	True	duplicates(23)		PASS		False	chr4:1806934	chr4:1739702	chr4:1806934-chr4:1739702	.	.	high	256	882	downstream	upstream	0		duplicates(23)	TGCACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGG___GAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGG___AGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAAAGTTCTAAAA	FGFR3	TACC3	ENSG00000068078	ENSG00000013810	CTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|VKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVL	LH00995:25:23T55JLT4:1:1274:4325:19762,LH00995:25:23T55JLT4:1:2240:21427:11551,LH00995:25:23T55JLT4:1:2260:19656:21150,LH00995:25:23T55JLT4:1:2260:19664:21164,LH00995:25:23T55JLT4:1:2437:11711:1112,LH00995:25:23T55JLT4:2:1386:11032:24933,LH00995:25:23T55JLT4:2:1425:5538:15279,LH00995:25:23T55JLT4:2:2125:13968:16960,LH00995:25:23T55JLT4:2:2482:35512:2429,LH00995:25:23T55JLT4:3:1112:27519:23588,LH00995:25:23T55JLT4:3:1132:27462:10907,LH00995:25:23T55JLT4:3:1202:3953:13345,LH00995:25:23T55JLT4:3:1285:50940:19762,LH00995:25:23T55JLT4:3:1328:17690:29263,LH00995:25:23T55JLT4:4:1313:17552:29025,LH00995:25:23T55JLT4:4:1479:3848:18179,LH00995:25:23T55JLT4:4:2136:30569:15895,LH00995:25:23T55JLT4:4:2145:8742:10823,LH00995:25:23T55JLT4:4:2202:38756:27553,LH00995:25:23T55JLT4:5:2155:2497:2079,LH00995:25:23T55JLT4:6:2126:41499:4167,LH00995:25:23T55JLT4:6:2143:24348:3999,LH00995:25:23T55JLT4:6:2429:3451:6899,LH00995:25:23T55JLT4:7:1135:7731:6913,LH00995:25:23T55JLT4:7:1353:32300:15979,LH00995:25:23T55JLT4:7:2203:50624:27091,LH00995:25:23T55JLT4:7:2221:9721:4587,LH00995:25:23T55JLT4:7:2266:6954:24905,LH00995:25:23T55JLT4:7:2359:25885:11201,LH00995:25:23T55JLT4:7:2372:5158:25465,LH00995:25:23T55JLT4:8:1184:41749:21864,LH00995:25:23T55JLT4:8:1194:30917:29109,LH00995:25:23T55JLT4:8:1194:30925:29095,LH00995:25:23T55JLT4:8:1294:23070:28044,LH00995:25:23T55JLT4:8:1470:26030:14059,LH00995:25:23T55JLT4:8:1470:26039:14073,LH00995:25:23T55JLT4:8:1470:26047:14059,LH00995:25:23T55JLT4:8:2329:37138:15783,LH00995:25:23T55JLT4:1:1425:14009:16694,LH00995:25:23T55JLT4:1:2155:38578:9786,LH00995:25:23T55JLT4:1:2326:43003:28969,LH00995:25:23T55JLT4:1:2397:12876:7418,LH00995:25:23T55JLT4:2:2251:43934:10010,LH00995:25:23T55JLT4:2:2275:4374:25283,LH00995:25:23T55JLT4:3:1313:9292:23518,LH00995:25:23T55JLT4:3:2158:23862:16722,LH00995:25:23T55JLT4:4:1149:34468:10907,LH00995:25:23T55JLT4:4:1429:11032:26334,LH00995:25:23T55JLT4:5:1356:18604:25493,LH00995:25:23T55JLT4:6:1253:27228:1364,LH00995:25:23T55JLT4:6:1374:35010:17282,LH00995:25:23T55JLT4:6:2333:44395:8763	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(95%)	CDS/splice-site	CDS/splice-site	8	21	+/+	+/+	.	29	ENST00000412135	ENST00000651472	duplication	0.030303030303030304	0.023255813953488372	0.026779422128259338																																						1173_PCB	Arriba
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	Arriba	1	0	40		40	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	confidence:high;duplicates(120)	high	duplication	CDS/splice-site	CDS/splice-site	831	3038	120.0	0.0	0.0	0.0									19	21	True	duplicates(120)		PASS		False	chr4:1806934	chr4:1739702	chr4:1806934-chr4:1739702	.	.	high	831	3038	downstream	upstream	0		duplicates(120)	ACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGG___GAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGG___AGGAAGTTCAGAAGCAGAAGGAACT	FGFR3	TACC3	ENSG00000068078	ENSG00000013810	THDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|VKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKE	LH00995:25:23T55JLT4:1:1172:43553:20449,LH00995:25:23T55JLT4:1:1181:14535:26040,LH00995:25:23T55JLT4:1:1290:34946:20869,LH00995:25:23T55JLT4:1:1343:15918:23223,LH00995:25:23T55JLT4:1:1343:15934:23223,LH00995:25:23T55JLT4:1:1357:50098:3284,LH00995:25:23T55JLT4:1:1357:50106:3298,LH00995:25:23T55JLT4:1:1409:49071:13359,LH00995:25:23T55JLT4:1:1413:34873:2695,LH00995:25:23T55JLT4:1:1465:34582:4881,LH00995:25:23T55JLT4:1:2129:44953:11411,LH00995:25:23T55JLT4:1:2192:27624:12056,LH00995:25:23T55JLT4:1:2218:50948:12406,LH00995:25:23T55JLT4:1:2336:33595:22509,LH00995:25:23T55JLT4:1:2360:32130:23448,LH00995:25:23T55JLT4:2:1135:8839:13765,LH00995:25:23T55JLT4:2:1135:8847:13751,LH00995:25:23T55JLT4:2:1138:41507:22929,LH00995:25:23T55JLT4:2:1281:48949:28842,LH00995:25:23T55JLT4:2:1288:22673:28590,LH00995:25:23T55JLT4:2:1333:46959:26657,LH00995:25:23T55JLT4:2:1377:2877:14396,LH00995:25:23T55JLT4:2:1396:42761:24260,LH00995:25:23T55JLT4:2:1406:9495:2121,LH00995:25:23T55JLT4:2:2245:15732:16147,LH00995:25:23T55JLT4:2:2384:41151:20155,LH00995:25:23T55JLT4:2:2460:27381:27749,LH00995:25:23T55JLT4:3:1126:40495:15657,LH00995:25:23T55JLT4:3:1227:39767:9379,LH00995:25:23T55JLT4:3:1282:5466:24709,LH00995:25:23T55JLT4:3:1317:5450:8903,LH00995:25:23T55JLT4:3:1332:47809:10024,LH00995:25:23T55JLT4:3:1341:12755:4909,LH00995:25:23T55JLT4:3:1379:43764:24737,LH00995:25:23T55JLT4:3:1379:43772:24751,LH00995:25:23T55JLT4:3:1396:26071:6927,LH00995:25:23T55JLT4:3:1420:22341:18207,LH00995:25:23T55JLT4:3:1420:48221:27862,LH00995:25:23T55JLT4:3:1435:41539:10514,LH00995:25:23T55JLT4:3:1438:48569:15489,LH00995:25:23T55JLT4:3:1477:49419:13597,LH00995:25:23T55JLT4:3:2130:17447:28674,LH00995:25:23T55JLT4:3:2248:15077:12070,LH00995:25:23T55JLT4:3:2284:31645:2597,LH00995:25:23T55JLT4:3:2337:35318:23083,LH00995:25:23T55JLT4:3:2363:37292:12658,LH00995:25:23T55JLT4:3:2421:32227:29445,LH00995:25:23T55JLT4:3:2427:44872:10318,LH00995:25:23T55JLT4:3:2448:18895:9239,LH00995:25:23T55JLT4:3:2455:38109:29683,LH00995:25:23T55JLT4:4:1145:5967:29305,LH00995:25:23T55JLT4:4:1160:8710:24947,LH00995:25:23T55JLT4:4:1169:16015:17731,LH00995:25:23T55JLT4:4:1201:18264:8763,LH00995:25:23T55JLT4:4:1231:45171:2653,LH00995:25:23T55JLT4:4:1364:22220:16484,LH00995:25:23T55JLT4:4:2131:26176:17478,LH00995:25:23T55JLT4:4:2148:37276:15068,LH00995:25:23T55JLT4:4:2212:3144:10038,LH00995:25:23T55JLT4:4:2214:3888:24330,LH00995:25:23T55JLT4:4:2326:44815:24933,LH00995:25:23T55JLT4:4:2331:37009:4994,LH00995:25:23T55JLT4:5:2204:16500:19861,LH00995:25:23T55JLT4:5:2364:2723:14382,LH00995:25:23T55JLT4:5:2381:37178:23700,LH00995:25:23T55JLT4:6:1148:8362:3606,LH00995:25:23T55JLT4:6:1201:40277:6171,LH00995:25:23T55JLT4:6:1211:31685:15166,LH00995:25:23T55JLT4:6:1242:50139:21766,LH00995:25:23T55JLT4:6:1246:23749:8595,LH00995:25:23T55JLT4:6:2409:35471:2107,LH00995:25:23T55JLT4:6:2450:14680:2471,LH00995:25:23T55JLT4:7:1139:37931:10290,LH00995:25:23T55JLT4:7:1198:43990:2990,LH00995:25:23T55JLT4:7:1220:1210:7278,LH00995:25:23T55JLT4:7:1234:40455:16231,LH00995:25:23T55JLT4:7:1280:26168:20463,LH00995:25:23T55JLT4:7:1401:18021:6801,LH00995:25:23T55JLT4:7:1411:51740:11705,LH00995:25:23T55JLT4:7:1426:12358:11509,LH00995:25:23T55JLT4:7:1468:10732:28898,LH00995:25:23T55JLT4:7:2166:49548:4041,LH00995:25:23T55JLT4:7:2167:37429:1518,LH00995:25:23T55JLT4:7:2188:12698:5316,LH00995:25:23T55JLT4:7:2398:34501:26797,LH00995:25:23T55JLT4:7:2408:25416:11817,LH00995:25:23T55JLT4:7:2481:11315:19370,LH00995:25:23T55JLT4:8:1276:28385:14438,LH00995:25:23T55JLT4:8:1276:30391:27385,LH00995:25:23T55JLT4:8:1276:9729:22173,LH00995:25:23T55JLT4:8:1297:32850:1126,LH00995:25:23T55JLT4:8:1337:31807:27707,LH00995:25:23T55JLT4:8:1460:14098:7852,LH00995:25:23T55JLT4:8:1476:7140:20631,LH00995:25:23T55JLT4:1:1392:44921:28926,LH00995:25:23T55JLT4:1:1394:18491:15797,LH00995:25:23T55JLT4:1:2141:16953:20757,LH00995:25:23T55JLT4:1:2147:21767:2780,LH00995:25:23T55JLT4:1:2221:13693:24807,LH00995:25:23T55JLT4:1:2235:4406:2443,LH00995:25:23T55JLT4:1:2378:5490:13933,LH00995:25:23T55JLT4:1:2420:22058:2892,LH00995:25:23T55JLT4:1:2488:9486:11719,LH00995:25:23T55JLT4:2:1150:37276:15489,LH00995:25:23T55JLT4:2:1322:28619:13975,LH00995:25:23T55JLT4:2:1421:44597:24218,LH00995:25:23T55JLT4:2:1459:22083:18655,LH00995:25:23T55JLT4:2:2109:25917:23223,LH00995:25:23T55JLT4:2:2110:29113:15503,LH00995:25:23T55JLT4:2:2285:38821:4881,LH00995:25:23T55JLT4:2:2364:37267:25087,LH00995:25:23T55JLT4:2:2491:30496:10977,LH00995:25:23T55JLT4:3:1268:5692:7249,LH00995:25:23T55JLT4:3:1369:35285:5960,LH00995:25:23T55JLT4:3:2111:4956:19847,LH00995:25:23T55JLT4:3:2192:24485:20939,LH00995:25:23T55JLT4:3:2228:46021:18529,LH00995:25:23T55JLT4:3:2387:16015:21906,LH00995:25:23T55JLT4:4:1177:51700:16680,LH00995:25:23T55JLT4:4:1230:42364:6367,LH00995:25:23T55JLT4:4:1411:8111:24695,LH00995:25:23T55JLT4:4:2175:6250:12868,LH00995:25:23T55JLT4:4:2278:17762:17899,LH00995:25:23T55JLT4:4:2310:2456:24821,LH00995:25:23T55JLT4:4:2422:42955:27035,LH00995:25:23T55JLT4:5:1145:27770:28926,LH00995:25:23T55JLT4:5:1178:16314:8721,LH00995:25:23T55JLT4:5:1290:39080:26572,LH00995:25:23T55JLT4:5:1343:6226:26194,LH00995:25:23T55JLT4:5:1352:6809:28240,LH00995:25:23T55JLT4:5:1353:4535:9113,LH00995:25:23T55JLT4:5:1487:35593:19664,LH00995:25:23T55JLT4:5:2102:32551:27904,LH00995:25:23T55JLT4:5:2153:7035:29109,LH00995:25:23T55JLT4:5:2162:8087:9632,LH00995:25:23T55JLT4:5:2216:24971:7488,LH00995:25:23T55JLT4:5:2252:24938:17633,LH00995:25:23T55JLT4:5:2252:25399:18067,LH00995:25:23T55JLT4:5:2418:14348:4923,LH00995:25:23T55JLT4:5:2456:38028:21276,LH00995:25:23T55JLT4:5:2468:22123:23462,LH00995:25:23T55JLT4:6:1195:11671:13177,LH00995:25:23T55JLT4:6:1246:40245:24779,LH00995:25:23T55JLT4:6:1330:43642:18782,LH00995:25:23T55JLT4:6:1462:50001:9505,LH00995:25:23T55JLT4:6:2371:35253:28716,LH00995:25:23T55JLT4:6:2432:32324:9716,LH00995:25:23T55JLT4:6:2451:51619:26909,LH00995:25:23T55JLT4:7:1339:38578:15699,LH00995:25:23T55JLT4:7:1446:13863:1981,LH00995:25:23T55JLT4:7:2150:22900:8048,LH00995:25:23T55JLT4:8:1104:31580:8651,LH00995:25:23T55JLT4:8:1258:12520:22327,LH00995:25:23T55JLT4:8:1261:46207:17086,LH00995:25:23T55JLT4:8:1272:49402:3929,LH00995:25:23T55JLT4:8:1277:15311:15895,LH00995:25:23T55JLT4:8:1404:31143:28184,LH00995:25:23T55JLT4:8:2212:24057:6493,LH00995:25:23T55JLT4:8:2220:41652:25704,LH00995:25:23T55JLT4:8:2411:25925:23097	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(95%)	CDS/splice-site	CDS/splice-site	19	21	+/+	+/+	.	40	ENST00000412135	ENST00000651472	duplication	0.02235294117647059	0.006864988558352402	0.014608964867411495																																						1173_PCB	Arriba
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	STAR-Fusion	1	0	29	0.2759	29	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"											ONLY_REF_SPLICE	YES_LDAS	1.7819	False	False	False	GT	AG	29		True		TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA;Klijn_CellLines																																								1	ENST00000340107.8	1-2280	ENST00000651472.1	1942-2517	0.2759	PASS	atgggcgcccctgcctgcgccctcgcgctctgcgtggccgtggccatcgtggccggcgcctcctcggagtccttggggacggagcagcgcgtcgtggggcgagcggcagaagtcccgggcccagagcccggccagcaggagcagttggtcttcggcagcggggatgctgtggagctgagctgtcccccgcccgggggtggtcccatggggcccactgtctgggtcaaggatggcacagggctggtgccctcggagcgtgtcctggtggggccccagcggctgcaggtgctgaatgcctcccacgaggactccggggcctacagctgccggcagcggctcacgcagcgcgtactgtgccacttcagtgtgcgggtgacagacgctccatcctcgggagatgacgaagacggggaggacgaggctgaggacacaggtgtggacacaggggccccttactggacacggcccgagcggatggacaagaagctgctggccgtgccggccgccaacaccgtccgcttccgctgcccagccgctggcaaccccactccctccatctcctggctgaagaacggcagggagttccgcggcgagcaccgcattggaggcatcaagctgcggcatcagcagtggagcctggtcatggaaagcgtggtgccctcggaccgcggcaactacacctgcgtcgtggagaacaagtttggcagcatccggcagacgtacacgctggacgtgctggagcgctccccgcaccggcccatcctgcaggcggggctgccggccaaccagacggcggtgctgggcagcgacgtggagttccactgcaaggtgtacagtgacgcacagccccacatccagtggctcaagcacgtggaggtgaatggcagcaaggtgggcccggacggcacaccctacgttaccgtgctcaagtcctggatcagtgagagtgtggaggccgacgtgcgcctccgcctggccaatgtgtcggagcgggacgggggcgagtacctctgtcgagccaccaatttcataggcgtggccgagaaggccttttggctgagcgttcacgggccccgagcagccgaggaggagctggtggaggctgacgaggcgggcagtgtgtatgcaggcatcctcagctacggggtgggcttcttcctgttcatcctggtggtggcggctgtgacgctctgccgcctgcgcagcccccccaagaaaggcctgggctcccccaccgtgcacaagatctcccgcttcccgctcaagcgacaggtgtccctggagtccaacgcgtccatgagctccaacacaccactggtgcgcatcgcaaggctgtcctcaggggagggccccacgctggccaatgtctccgagctcgagctgcctgccgaccccaaatgggagctgtctcgggcccggctgaccctgggcaagccccttggggagggctgcttcggccaggtggtcatggcggaggccatcggcattgacaaggaccgggccgccaagcctgtcaccgtagccgtgaagatgctgaaagacgatgccactgacaaggacctgtcggacctggtgtctgagatggagatgatgaagatgatcgggaaacacaaaaacatcatcaacctgctgggcgcctgcacgcagggcgggcccctgtacgtgctggtggagtacgcggccaagggtaacctgcgggagtttctgcgggcgcggcggcccccgggcctggactactccttcgacacctgcaagccgcccgaggagcagctcaccttcaaggacctggtgtcctgtgcctaccaggtggcccggggcatggagtacttggcctcccagaagtgcatccacagggacctggctgcccgcaatgtgctggtgaccgaggacaacgtgatgaagatcgcagacttcgggctggcccgggacgtgcacaacctcgactactacaagaagacgaccaacggccggctgcccgtgaagtggatggcgcctgaggccttgtttgaccgagtctacactcaccagagtgacgtctggtcctttggggtcctgctctgggagatcttcacgctggggggctccccgtaccccggcatccctgtggaggagctcttcaagctgctgaaggagggccaccgcatggacaagcccgccaactgcacacacgacctgtacatgatcatgcgggagtgctggcatgccgcgccctcccagaggcccaccttcaagcagctggtggaggacctggaccgtgtccttaccgtgacgtccaccgacGTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGGGAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGGAGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAAAGTTCTAAAAGAAAAAGACCAACTTACCACAGATCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGCGTTTTGAGAAACAGAAAGAGGTGATCGAGGGCTACCGCAAGAACGAAGAGTCACTGAAGAAGTGCGTGGAGGATTACCTGGCAAGGATCACCCAGGAGGGCCAGAGGTACCAAGCCCTGAAGGCCCACGCGGAGGAGAAGCTGCAGCTGGCAAACGAGGAGATCGCCCAGGTCCGGAGCAAGGCCCAGGCGGAAGCGTTGGCCCTCCAGGCCAGCCTGAGGAAGGAGCAGATGCGCATCCAGTCGCTGGAGAAGACAGTGGAGCAGAAGACTAAAGAGAACGAGGAGCTGACCAGGATCTGCGACGACCTCATCTCCAAGATGGAGAAGATCTGA	chr4|+|[0]1793935-1794043[0]|[1]1799254-1799523[0]|[1]1799747-1799812[0]|[1]1801367-1801536[2]|[0]1801620-1801743[0]|[1]1801835-1802025[2]|[0]1802914-1803064[0]|[1]1804330-1804520[2]|[0]1804824-1804969[1]|[2]1805355-1805476[0]|[1]1805559-1805669[0]|[1]1805750-1805940[2]|[0]1806051-1806173[2]|[0]1806257-1806327[1]|[2]1806546-1806683[1]|[2]1806829-1806934[2]<==>chr4|+|[0]1739702-1739778[1]|[2]1739959-1740002[0]|[1]1740826-1740986[2]|[0]1744518-1744624[1]|[2]1744712-1744832[2]|[0]1744948-1745013[2]	MGAPACALALCVAVAIVAGASSESLGTEQRVVGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVYAGILSYGVGFFLFILVVAAVTLCRLRSPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTDVKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSMEKSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLANEEIAQVRSKAQAEALALQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISKMEKI*	FGFR3--TACC3	29	LH00995:25:23T55JLT4:1:1274:4325:19762,LH00995:25:23T55JLT4:1:1425:14009:16694,LH00995:25:23T55JLT4:1:2155:38578:9786,LH00995:25:23T55JLT4:1:2240:21427:11551,LH00995:25:23T55JLT4:1:2260:19656:21150,LH00995:25:23T55JLT4:1:2326:43003:28969,LH00995:25:23T55JLT4:1:2397:12876:7418,LH00995:25:23T55JLT4:1:2437:11711:1112,LH00995:25:23T55JLT4:2:1386:11032:24933,LH00995:25:23T55JLT4:2:1425:5538:15279,LH00995:25:23T55JLT4:2:2251:43934:10010,LH00995:25:23T55JLT4:2:2482:35512:2429,LH00995:25:23T55JLT4:3:1112:27519:23588,LH00995:25:23T55JLT4:3:1132:27462:10907,LH00995:25:23T55JLT4:3:1202:3953:13345,LH00995:25:23T55JLT4:3:1285:50940:19762,LH00995:25:23T55JLT4:3:1313:9292:23518,LH00995:25:23T55JLT4:3:2158:23862:16722,LH00995:25:23T55JLT4:4:1149:34468:10907,LH00995:25:23T55JLT4:4:1313:17552:29025,LH00995:25:23T55JLT4:4:1479:3848:18179,LH00995:25:23T55JLT4:4:2136:30569:15895,LH00995:25:23T55JLT4:4:2145:8742:10823,LH00995:25:23T55JLT4:4:2202:38756:27553,LH00995:25:23T55JLT4:6:2429:3451:6899,LH00995:25:23T55JLT4:7:2221:9721:4587,LH00995:25:23T55JLT4:7:2266:6954:24905,LH00995:25:23T55JLT4:8:1194:30917:29109,LH00995:25:23T55JLT4:8:1470:26030:14059	YES_LDAS	GT	1.8892	chr4:1806934:+	FGFR3^ENSG00000068078.20	I-set|48-110|6.2e-06^ig|49-110|5.6e-05^Ig_3|51-110|1.4e-06^Ig_2|52-115|3.4e-06^V-set|53-80|4.4^C2-set_2|54-85|2.3^Ig_4|56-116|0.006^V-set|94-110|0.043^Ig_6|94-119|0.0043^V-set_CD47|97-111|4.6^ig|161-236|3.6e-11^V-set|164-192|0.27^I-set|166-245|2.5e-18^Ig_3|166-232|1.1e-15^Ig_2|166-240|6.1e-13^C2-set_2|170-195|3.4e-05^Ig_4|185-233|0.024^V-set|206-245|0.00013^V-set_CD47|208-245|0.00099^Ig_6|213-245|0.019^Ig_2|253-342|1.6e-06^I-set|260-355|4.5e-14^Ig_3|260-342|1.8e-13^V-set|260-356|1.1e-07^ig|264-348|2.3e-07^C2-set_2|268-291|0.35^V-set_CD47|274-343|0.026^Ig_4|321-340|1.3^Ig_6|323-341|0.33^FGFR3_TM|371-401|2.3e-17^PK_Tyr_Ser-Thr|474-750|6.3e-107^Pkinase|477-748|4.2e-47^Pkinase_fungal|592-687|1.8e-05	.	INFRAME	AG	1.7819	chr4:1739702:+	TACC3^ENSG00000013810.20	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"		False	chr4:1806934-chr4:1739702	29.0	0.0		29	1173_PCB	STAR-Fusion
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	STAR-Fusion	1	0	41	0.1775	41	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"											ONLY_REF_SPLICE	YES_LDAS	1.7819	False	False	False	GT	AG	41		True		TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA;Klijn_CellLines																																								1	ENST00000340107.8	1-2280	ENST00000651472.1	1942-2517	0.1775	PASS	atgggcgcccctgcctgcgccctcgcgctctgcgtggccgtggccatcgtggccggcgcctcctcggagtccttggggacggagcagcgcgtcgtggggcgagcggcagaagtcccgggcccagagcccggccagcaggagcagttggtcttcggcagcggggatgctgtggagctgagctgtcccccgcccgggggtggtcccatggggcccactgtctgggtcaaggatggcacagggctggtgccctcggagcgtgtcctggtggggccccagcggctgcaggtgctgaatgcctcccacgaggactccggggcctacagctgccggcagcggctcacgcagcgcgtactgtgccacttcagtgtgcgggtgacagacgctccatcctcgggagatgacgaagacggggaggacgaggctgaggacacaggtgtggacacaggggccccttactggacacggcccgagcggatggacaagaagctgctggccgtgccggccgccaacaccgtccgcttccgctgcccagccgctggcaaccccactccctccatctcctggctgaagaacggcagggagttccgcggcgagcaccgcattggaggcatcaagctgcggcatcagcagtggagcctggtcatggaaagcgtggtgccctcggaccgcggcaactacacctgcgtcgtggagaacaagtttggcagcatccggcagacgtacacgctggacgtgctggagcgctccccgcaccggcccatcctgcaggcggggctgccggccaaccagacggcggtgctgggcagcgacgtggagttccactgcaaggtgtacagtgacgcacagccccacatccagtggctcaagcacgtggaggtgaatggcagcaaggtgggcccggacggcacaccctacgttaccgtgctcaagtcctggatcagtgagagtgtggaggccgacgtgcgcctccgcctggccaatgtgtcggagcgggacgggggcgagtacctctgtcgagccaccaatttcataggcgtggccgagaaggccttttggctgagcgttcacgggccccgagcagccgaggaggagctggtggaggctgacgaggcgggcagtgtgtatgcaggcatcctcagctacggggtgggcttcttcctgttcatcctggtggtggcggctgtgacgctctgccgcctgcgcagcccccccaagaaaggcctgggctcccccaccgtgcacaagatctcccgcttcccgctcaagcgacaggtgtccctggagtccaacgcgtccatgagctccaacacaccactggtgcgcatcgcaaggctgtcctcaggggagggccccacgctggccaatgtctccgagctcgagctgcctgccgaccccaaatgggagctgtctcgggcccggctgaccctgggcaagccccttggggagggctgcttcggccaggtggtcatggcggaggccatcggcattgacaaggaccgggccgccaagcctgtcaccgtagccgtgaagatgctgaaagacgatgccactgacaaggacctgtcggacctggtgtctgagatggagatgatgaagatgatcgggaaacacaaaaacatcatcaacctgctgggcgcctgcacgcagggcgggcccctgtacgtgctggtggagtacgcggccaagggtaacctgcgggagtttctgcgggcgcggcggcccccgggcctggactactccttcgacacctgcaagccgcccgaggagcagctcaccttcaaggacctggtgtcctgtgcctaccaggtggcccggggcatggagtacttggcctcccagaagtgcatccacagggacctggctgcccgcaatgtgctggtgaccgaggacaacgtgatgaagatcgcagacttcgggctggcccgggacgtgcacaacctcgactactacaagaagacgaccaacggccggctgcccgtgaagtggatggcgcctgaggccttgtttgaccgagtctacactcaccagagtgacgtctggtcctttggggtcctgctctgggagatcttcacgctggggggctccccgtaccccggcatccctgtggaggagctcttcaagctgctgaaggagggccaccgcatggacaagcccgccaactgcacacacgacctgtacatgatcatgcgggagtgctggcatgccgcgccctcccagaggcccaccttcaagcagctggtggaggacctggaccgtgtccttaccgtgacgtccaccgacGTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGGGAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGGAGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAAAGTTCTAAAAGAAAAAGACCAACTTACCACAGATCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGCGTTTTGAGAAACAGAAAGAGGTGATCGAGGGCTACCGCAAGAACGAAGAGTCACTGAAGAAGTGCGTGGAGGATTACCTGGCAAGGATCACCCAGGAGGGCCAGAGGTACCAAGCCCTGAAGGCCCACGCGGAGGAGAAGCTGCAGCTGGCAAACGAGGAGATCGCCCAGGTCCGGAGCAAGGCCCAGGCGGAAGCGTTGGCCCTCCAGGCCAGCCTGAGGAAGGAGCAGATGCGCATCCAGTCGCTGGAGAAGACAGTGGAGCAGAAGACTAAAGAGAACGAGGAGCTGACCAGGATCTGCGACGACCTCATCTCCAAGATGGAGAAGATCTGA	chr4|+|[0]1793935-1794043[0]|[1]1799254-1799523[0]|[1]1799747-1799812[0]|[1]1801367-1801536[2]|[0]1801620-1801743[0]|[1]1801835-1802025[2]|[0]1802914-1803064[0]|[1]1804330-1804520[2]|[0]1804824-1804969[1]|[2]1805355-1805476[0]|[1]1805559-1805669[0]|[1]1805750-1805940[2]|[0]1806051-1806173[2]|[0]1806257-1806327[1]|[2]1806546-1806683[1]|[2]1806829-1806934[2]<==>chr4|+|[0]1739702-1739778[1]|[2]1739959-1740002[0]|[1]1740826-1740986[2]|[0]1744518-1744624[1]|[2]1744712-1744832[2]|[0]1744948-1745013[2]	MGAPACALALCVAVAIVAGASSESLGTEQRVVGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVYAGILSYGVGFFLFILVVAAVTLCRLRSPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTDVKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSMEKSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLANEEIAQVRSKAQAEALALQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISKMEKI*	FGFR3--TACC3	41	LH00995:25:23T55JLT4:1:1172:43553:20449,LH00995:25:23T55JLT4:1:1181:14535:26040,LH00995:25:23T55JLT4:1:1290:34946:20869,LH00995:25:23T55JLT4:1:1357:50098:3284,LH00995:25:23T55JLT4:1:1392:44921:28926,LH00995:25:23T55JLT4:1:1409:49071:13359,LH00995:25:23T55JLT4:1:1465:34582:4881,LH00995:25:23T55JLT4:1:2129:44953:11411,LH00995:25:23T55JLT4:1:2141:16953:20757,LH00995:25:23T55JLT4:1:2147:21767:2780,LH00995:25:23T55JLT4:1:2192:27624:12056,LH00995:25:23T55JLT4:1:2218:50948:12406,LH00995:25:23T55JLT4:1:2221:13693:24807,LH00995:25:23T55JLT4:1:2235:4406:2443,LH00995:25:23T55JLT4:1:2336:33595:22509,LH00995:25:23T55JLT4:1:2360:32130:23448,LH00995:25:23T55JLT4:1:2378:5490:13933,LH00995:25:23T55JLT4:1:2420:22058:2892,LH00995:25:23T55JLT4:1:2488:9486:11719,LH00995:25:23T55JLT4:2:1135:8839:13765,LH00995:25:23T55JLT4:2:1150:37276:15489,LH00995:25:23T55JLT4:2:1281:48949:28842,LH00995:25:23T55JLT4:2:1396:42761:24260,LH00995:25:23T55JLT4:2:1421:44597:24218,LH00995:25:23T55JLT4:2:2109:25917:23223,LH00995:25:23T55JLT4:2:2110:29113:15503,LH00995:25:23T55JLT4:2:2364:37267:25087,LH00995:25:23T55JLT4:2:2460:27381:27749,LH00995:25:23T55JLT4:3:1126:40495:15657,LH00995:25:23T55JLT4:3:1268:5692:7249,LH00995:25:23T55JLT4:3:1341:12755:4909,LH00995:25:23T55JLT4:3:1438:48569:15489,LH00995:25:23T55JLT4:3:1477:49419:13597,LH00995:25:23T55JLT4:3:2363:37292:12658,LH00995:25:23T55JLT4:3:2387:16015:21906,LH00995:25:23T55JLT4:4:1411:8111:24695,LH00995:25:23T55JLT4:4:2175:6250:12868,LH00995:25:23T55JLT4:5:1352:6809:28240,LH00995:25:23T55JLT4:5:2381:37178:23700,LH00995:25:23T55JLT4:6:1195:11671:13177,LH00995:25:23T55JLT4:6:1246:40245:24779	YES_LDAS	GT	1.8892	chr4:1806934:+	FGFR3^ENSG00000068078.20	I-set|48-110|6.2e-06^ig|49-110|5.6e-05^Ig_3|51-110|1.4e-06^Ig_2|52-115|3.4e-06^V-set|53-80|4.4^C2-set_2|54-85|2.3^Ig_4|56-116|0.006^V-set|94-110|0.043^Ig_6|94-119|0.0043^V-set_CD47|97-111|4.6^ig|161-236|3.6e-11^V-set|164-192|0.27^I-set|166-245|2.5e-18^Ig_3|166-232|1.1e-15^Ig_2|166-240|6.1e-13^C2-set_2|170-195|3.4e-05^Ig_4|185-233|0.024^V-set|206-245|0.00013^V-set_CD47|208-245|0.00099^Ig_6|213-245|0.019^Ig_2|253-342|1.6e-06^I-set|260-355|4.5e-14^Ig_3|260-342|1.8e-13^V-set|260-356|1.1e-07^ig|264-348|2.3e-07^C2-set_2|268-291|0.35^V-set_CD47|274-343|0.026^Ig_4|321-340|1.3^Ig_6|323-341|0.33^FGFR3_TM|371-401|2.3e-17^PK_Tyr_Ser-Thr|474-750|6.3e-107^Pkinase|477-748|4.2e-47^Pkinase_fungal|592-687|1.8e-05	.	INFRAME	AG	1.7819	chr4:1739702:+	TACC3^ENSG00000013810.20	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"		False	chr4:1806934-chr4:1739702	41.0	0.0		41	1173_PCB	STAR-Fusion
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	Arriba	1	0	40		40	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	confidence:high;duplicates(120)	high	duplication	CDS/splice-site	CDS/splice-site	831	3038	120.0	0.0	0.0	0.0									19	21	True	duplicates(120)		PASS		False	chr4:1806934	chr4:1739702	chr4:1806934-chr4:1739702	.	.	high	831	3038	downstream	upstream	0		duplicates(120)	ACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGG___GAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGG___AGGAAGTTCAGAAGCAGAAGGAACT	FGFR3	TACC3	ENSG00000068078	ENSG00000013810	THDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|VKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKE	LH00995:25:23T55JLT4:1:1172:43553:20449,LH00995:25:23T55JLT4:1:1181:14535:26040,LH00995:25:23T55JLT4:1:1290:34946:20869,LH00995:25:23T55JLT4:1:1343:15918:23223,LH00995:25:23T55JLT4:1:1343:15934:23223,LH00995:25:23T55JLT4:1:1357:50098:3284,LH00995:25:23T55JLT4:1:1357:50106:3298,LH00995:25:23T55JLT4:1:1409:49071:13359,LH00995:25:23T55JLT4:1:1413:34873:2695,LH00995:25:23T55JLT4:1:1465:34582:4881,LH00995:25:23T55JLT4:1:2129:44953:11411,LH00995:25:23T55JLT4:1:2192:27624:12056,LH00995:25:23T55JLT4:1:2218:50948:12406,LH00995:25:23T55JLT4:1:2336:33595:22509,LH00995:25:23T55JLT4:1:2360:32130:23448,LH00995:25:23T55JLT4:2:1135:8839:13765,LH00995:25:23T55JLT4:2:1135:8847:13751,LH00995:25:23T55JLT4:2:1138:41507:22929,LH00995:25:23T55JLT4:2:1281:48949:28842,LH00995:25:23T55JLT4:2:1288:22673:28590,LH00995:25:23T55JLT4:2:1333:46959:26657,LH00995:25:23T55JLT4:2:1377:2877:14396,LH00995:25:23T55JLT4:2:1396:42761:24260,LH00995:25:23T55JLT4:2:1406:9495:2121,LH00995:25:23T55JLT4:2:2245:15732:16147,LH00995:25:23T55JLT4:2:2384:41151:20155,LH00995:25:23T55JLT4:2:2460:27381:27749,LH00995:25:23T55JLT4:3:1126:40495:15657,LH00995:25:23T55JLT4:3:1227:39767:9379,LH00995:25:23T55JLT4:3:1282:5466:24709,LH00995:25:23T55JLT4:3:1317:5450:8903,LH00995:25:23T55JLT4:3:1332:47809:10024,LH00995:25:23T55JLT4:3:1341:12755:4909,LH00995:25:23T55JLT4:3:1379:43764:24737,LH00995:25:23T55JLT4:3:1379:43772:24751,LH00995:25:23T55JLT4:3:1396:26071:6927,LH00995:25:23T55JLT4:3:1420:22341:18207,LH00995:25:23T55JLT4:3:1420:48221:27862,LH00995:25:23T55JLT4:3:1435:41539:10514,LH00995:25:23T55JLT4:3:1438:48569:15489,LH00995:25:23T55JLT4:3:1477:49419:13597,LH00995:25:23T55JLT4:3:2130:17447:28674,LH00995:25:23T55JLT4:3:2248:15077:12070,LH00995:25:23T55JLT4:3:2284:31645:2597,LH00995:25:23T55JLT4:3:2337:35318:23083,LH00995:25:23T55JLT4:3:2363:37292:12658,LH00995:25:23T55JLT4:3:2421:32227:29445,LH00995:25:23T55JLT4:3:2427:44872:10318,LH00995:25:23T55JLT4:3:2448:18895:9239,LH00995:25:23T55JLT4:3:2455:38109:29683,LH00995:25:23T55JLT4:4:1145:5967:29305,LH00995:25:23T55JLT4:4:1160:8710:24947,LH00995:25:23T55JLT4:4:1169:16015:17731,LH00995:25:23T55JLT4:4:1201:18264:8763,LH00995:25:23T55JLT4:4:1231:45171:2653,LH00995:25:23T55JLT4:4:1364:22220:16484,LH00995:25:23T55JLT4:4:2131:26176:17478,LH00995:25:23T55JLT4:4:2148:37276:15068,LH00995:25:23T55JLT4:4:2212:3144:10038,LH00995:25:23T55JLT4:4:2214:3888:24330,LH00995:25:23T55JLT4:4:2326:44815:24933,LH00995:25:23T55JLT4:4:2331:37009:4994,LH00995:25:23T55JLT4:5:2204:16500:19861,LH00995:25:23T55JLT4:5:2364:2723:14382,LH00995:25:23T55JLT4:5:2381:37178:23700,LH00995:25:23T55JLT4:6:1148:8362:3606,LH00995:25:23T55JLT4:6:1201:40277:6171,LH00995:25:23T55JLT4:6:1211:31685:15166,LH00995:25:23T55JLT4:6:1242:50139:21766,LH00995:25:23T55JLT4:6:1246:23749:8595,LH00995:25:23T55JLT4:6:2409:35471:2107,LH00995:25:23T55JLT4:6:2450:14680:2471,LH00995:25:23T55JLT4:7:1139:37931:10290,LH00995:25:23T55JLT4:7:1198:43990:2990,LH00995:25:23T55JLT4:7:1220:1210:7278,LH00995:25:23T55JLT4:7:1234:40455:16231,LH00995:25:23T55JLT4:7:1280:26168:20463,LH00995:25:23T55JLT4:7:1401:18021:6801,LH00995:25:23T55JLT4:7:1411:51740:11705,LH00995:25:23T55JLT4:7:1426:12358:11509,LH00995:25:23T55JLT4:7:1468:10732:28898,LH00995:25:23T55JLT4:7:2166:49548:4041,LH00995:25:23T55JLT4:7:2167:37429:1518,LH00995:25:23T55JLT4:7:2188:12698:5316,LH00995:25:23T55JLT4:7:2398:34501:26797,LH00995:25:23T55JLT4:7:2408:25416:11817,LH00995:25:23T55JLT4:7:2481:11315:19370,LH00995:25:23T55JLT4:8:1276:28385:14438,LH00995:25:23T55JLT4:8:1276:30391:27385,LH00995:25:23T55JLT4:8:1276:9729:22173,LH00995:25:23T55JLT4:8:1297:32850:1126,LH00995:25:23T55JLT4:8:1337:31807:27707,LH00995:25:23T55JLT4:8:1460:14098:7852,LH00995:25:23T55JLT4:8:1476:7140:20631,LH00995:25:23T55JLT4:1:1392:44921:28926,LH00995:25:23T55JLT4:1:1394:18491:15797,LH00995:25:23T55JLT4:1:2141:16953:20757,LH00995:25:23T55JLT4:1:2147:21767:2780,LH00995:25:23T55JLT4:1:2221:13693:24807,LH00995:25:23T55JLT4:1:2235:4406:2443,LH00995:25:23T55JLT4:1:2378:5490:13933,LH00995:25:23T55JLT4:1:2420:22058:2892,LH00995:25:23T55JLT4:1:2488:9486:11719,LH00995:25:23T55JLT4:2:1150:37276:15489,LH00995:25:23T55JLT4:2:1322:28619:13975,LH00995:25:23T55JLT4:2:1421:44597:24218,LH00995:25:23T55JLT4:2:1459:22083:18655,LH00995:25:23T55JLT4:2:2109:25917:23223,LH00995:25:23T55JLT4:2:2110:29113:15503,LH00995:25:23T55JLT4:2:2285:38821:4881,LH00995:25:23T55JLT4:2:2364:37267:25087,LH00995:25:23T55JLT4:2:2491:30496:10977,LH00995:25:23T55JLT4:3:1268:5692:7249,LH00995:25:23T55JLT4:3:1369:35285:5960,LH00995:25:23T55JLT4:3:2111:4956:19847,LH00995:25:23T55JLT4:3:2192:24485:20939,LH00995:25:23T55JLT4:3:2228:46021:18529,LH00995:25:23T55JLT4:3:2387:16015:21906,LH00995:25:23T55JLT4:4:1177:51700:16680,LH00995:25:23T55JLT4:4:1230:42364:6367,LH00995:25:23T55JLT4:4:1411:8111:24695,LH00995:25:23T55JLT4:4:2175:6250:12868,LH00995:25:23T55JLT4:4:2278:17762:17899,LH00995:25:23T55JLT4:4:2310:2456:24821,LH00995:25:23T55JLT4:4:2422:42955:27035,LH00995:25:23T55JLT4:5:1145:27770:28926,LH00995:25:23T55JLT4:5:1178:16314:8721,LH00995:25:23T55JLT4:5:1290:39080:26572,LH00995:25:23T55JLT4:5:1343:6226:26194,LH00995:25:23T55JLT4:5:1352:6809:28240,LH00995:25:23T55JLT4:5:1353:4535:9113,LH00995:25:23T55JLT4:5:1487:35593:19664,LH00995:25:23T55JLT4:5:2102:32551:27904,LH00995:25:23T55JLT4:5:2153:7035:29109,LH00995:25:23T55JLT4:5:2162:8087:9632,LH00995:25:23T55JLT4:5:2216:24971:7488,LH00995:25:23T55JLT4:5:2252:24938:17633,LH00995:25:23T55JLT4:5:2252:25399:18067,LH00995:25:23T55JLT4:5:2418:14348:4923,LH00995:25:23T55JLT4:5:2456:38028:21276,LH00995:25:23T55JLT4:5:2468:22123:23462,LH00995:25:23T55JLT4:6:1195:11671:13177,LH00995:25:23T55JLT4:6:1246:40245:24779,LH00995:25:23T55JLT4:6:1330:43642:18782,LH00995:25:23T55JLT4:6:1462:50001:9505,LH00995:25:23T55JLT4:6:2371:35253:28716,LH00995:25:23T55JLT4:6:2432:32324:9716,LH00995:25:23T55JLT4:6:2451:51619:26909,LH00995:25:23T55JLT4:7:1339:38578:15699,LH00995:25:23T55JLT4:7:1446:13863:1981,LH00995:25:23T55JLT4:7:2150:22900:8048,LH00995:25:23T55JLT4:8:1104:31580:8651,LH00995:25:23T55JLT4:8:1258:12520:22327,LH00995:25:23T55JLT4:8:1261:46207:17086,LH00995:25:23T55JLT4:8:1272:49402:3929,LH00995:25:23T55JLT4:8:1277:15311:15895,LH00995:25:23T55JLT4:8:1404:31143:28184,LH00995:25:23T55JLT4:8:2212:24057:6493,LH00995:25:23T55JLT4:8:2220:41652:25704,LH00995:25:23T55JLT4:8:2411:25925:23097	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(95%)	CDS/splice-site	CDS/splice-site	19	21	+/+	+/+	.	40	ENST00000412135	ENST00000651472	duplication	0.02235294117647059	0.006864988558352402	0.014608964867411495																																						1173_PCB	Arriba
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	Arriba	1	0	29		29	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	confidence:high;duplicates(23)	high	duplication	CDS/splice-site	CDS/splice-site	256	882	23.0	0.0	0.0	0.0									8	21	True	duplicates(23)		PASS		False	chr4:1806934	chr4:1739702	chr4:1806934-chr4:1739702	.	.	high	256	882	downstream	upstream	0		duplicates(23)	TGCACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGG___GAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGG___AGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAAAGTTCTAAAA	FGFR3	TACC3	ENSG00000068078	ENSG00000013810	CTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|VKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVL	LH00995:25:23T55JLT4:1:1274:4325:19762,LH00995:25:23T55JLT4:1:2240:21427:11551,LH00995:25:23T55JLT4:1:2260:19656:21150,LH00995:25:23T55JLT4:1:2260:19664:21164,LH00995:25:23T55JLT4:1:2437:11711:1112,LH00995:25:23T55JLT4:2:1386:11032:24933,LH00995:25:23T55JLT4:2:1425:5538:15279,LH00995:25:23T55JLT4:2:2125:13968:16960,LH00995:25:23T55JLT4:2:2482:35512:2429,LH00995:25:23T55JLT4:3:1112:27519:23588,LH00995:25:23T55JLT4:3:1132:27462:10907,LH00995:25:23T55JLT4:3:1202:3953:13345,LH00995:25:23T55JLT4:3:1285:50940:19762,LH00995:25:23T55JLT4:3:1328:17690:29263,LH00995:25:23T55JLT4:4:1313:17552:29025,LH00995:25:23T55JLT4:4:1479:3848:18179,LH00995:25:23T55JLT4:4:2136:30569:15895,LH00995:25:23T55JLT4:4:2145:8742:10823,LH00995:25:23T55JLT4:4:2202:38756:27553,LH00995:25:23T55JLT4:5:2155:2497:2079,LH00995:25:23T55JLT4:6:2126:41499:4167,LH00995:25:23T55JLT4:6:2143:24348:3999,LH00995:25:23T55JLT4:6:2429:3451:6899,LH00995:25:23T55JLT4:7:1135:7731:6913,LH00995:25:23T55JLT4:7:1353:32300:15979,LH00995:25:23T55JLT4:7:2203:50624:27091,LH00995:25:23T55JLT4:7:2221:9721:4587,LH00995:25:23T55JLT4:7:2266:6954:24905,LH00995:25:23T55JLT4:7:2359:25885:11201,LH00995:25:23T55JLT4:7:2372:5158:25465,LH00995:25:23T55JLT4:8:1184:41749:21864,LH00995:25:23T55JLT4:8:1194:30917:29109,LH00995:25:23T55JLT4:8:1194:30925:29095,LH00995:25:23T55JLT4:8:1294:23070:28044,LH00995:25:23T55JLT4:8:1470:26030:14059,LH00995:25:23T55JLT4:8:1470:26039:14073,LH00995:25:23T55JLT4:8:1470:26047:14059,LH00995:25:23T55JLT4:8:2329:37138:15783,LH00995:25:23T55JLT4:1:1425:14009:16694,LH00995:25:23T55JLT4:1:2155:38578:9786,LH00995:25:23T55JLT4:1:2326:43003:28969,LH00995:25:23T55JLT4:1:2397:12876:7418,LH00995:25:23T55JLT4:2:2251:43934:10010,LH00995:25:23T55JLT4:2:2275:4374:25283,LH00995:25:23T55JLT4:3:1313:9292:23518,LH00995:25:23T55JLT4:3:2158:23862:16722,LH00995:25:23T55JLT4:4:1149:34468:10907,LH00995:25:23T55JLT4:4:1429:11032:26334,LH00995:25:23T55JLT4:5:1356:18604:25493,LH00995:25:23T55JLT4:6:1253:27228:1364,LH00995:25:23T55JLT4:6:1374:35010:17282,LH00995:25:23T55JLT4:6:2333:44395:8763	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(95%)	CDS/splice-site	CDS/splice-site	8	21	+/+	+/+	.	29	ENST00000412135	ENST00000651472	duplication	0.030303030303030304	0.023255813953488372	0.026779422128259338																																						1173_PCB	Arriba
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	STAR-Fusion	1	0	41	0.1775	41	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"											ONLY_REF_SPLICE	YES_LDAS	1.7819	False	False	False	GT	AG	41		True		TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA;Klijn_CellLines																																								1	ENST00000340107.8	1-2280	ENST00000651472.1	1942-2517	0.1775	PASS	atgggcgcccctgcctgcgccctcgcgctctgcgtggccgtggccatcgtggccggcgcctcctcggagtccttggggacggagcagcgcgtcgtggggcgagcggcagaagtcccgggcccagagcccggccagcaggagcagttggtcttcggcagcggggatgctgtggagctgagctgtcccccgcccgggggtggtcccatggggcccactgtctgggtcaaggatggcacagggctggtgccctcggagcgtgtcctggtggggccccagcggctgcaggtgctgaatgcctcccacgaggactccggggcctacagctgccggcagcggctcacgcagcgcgtactgtgccacttcagtgtgcgggtgacagacgctccatcctcgggagatgacgaagacggggaggacgaggctgaggacacaggtgtggacacaggggccccttactggacacggcccgagcggatggacaagaagctgctggccgtgccggccgccaacaccgtccgcttccgctgcccagccgctggcaaccccactccctccatctcctggctgaagaacggcagggagttccgcggcgagcaccgcattggaggcatcaagctgcggcatcagcagtggagcctggtcatggaaagcgtggtgccctcggaccgcggcaactacacctgcgtcgtggagaacaagtttggcagcatccggcagacgtacacgctggacgtgctggagcgctccccgcaccggcccatcctgcaggcggggctgccggccaaccagacggcggtgctgggcagcgacgtggagttccactgcaaggtgtacagtgacgcacagccccacatccagtggctcaagcacgtggaggtgaatggcagcaaggtgggcccggacggcacaccctacgttaccgtgctcaagtcctggatcagtgagagtgtggaggccgacgtgcgcctccgcctggccaatgtgtcggagcgggacgggggcgagtacctctgtcgagccaccaatttcataggcgtggccgagaaggccttttggctgagcgttcacgggccccgagcagccgaggaggagctggtggaggctgacgaggcgggcagtgtgtatgcaggcatcctcagctacggggtgggcttcttcctgttcatcctggtggtggcggctgtgacgctctgccgcctgcgcagcccccccaagaaaggcctgggctcccccaccgtgcacaagatctcccgcttcccgctcaagcgacaggtgtccctggagtccaacgcgtccatgagctccaacacaccactggtgcgcatcgcaaggctgtcctcaggggagggccccacgctggccaatgtctccgagctcgagctgcctgccgaccccaaatgggagctgtctcgggcccggctgaccctgggcaagccccttggggagggctgcttcggccaggtggtcatggcggaggccatcggcattgacaaggaccgggccgccaagcctgtcaccgtagccgtgaagatgctgaaagacgatgccactgacaaggacctgtcggacctggtgtctgagatggagatgatgaagatgatcgggaaacacaaaaacatcatcaacctgctgggcgcctgcacgcagggcgggcccctgtacgtgctggtggagtacgcggccaagggtaacctgcgggagtttctgcgggcgcggcggcccccgggcctggactactccttcgacacctgcaagccgcccgaggagcagctcaccttcaaggacctggtgtcctgtgcctaccaggtggcccggggcatggagtacttggcctcccagaagtgcatccacagggacctggctgcccgcaatgtgctggtgaccgaggacaacgtgatgaagatcgcagacttcgggctggcccgggacgtgcacaacctcgactactacaagaagacgaccaacggccggctgcccgtgaagtggatggcgcctgaggccttgtttgaccgagtctacactcaccagagtgacgtctggtcctttggggtcctgctctgggagatcttcacgctggggggctccccgtaccccggcatccctgtggaggagctcttcaagctgctgaaggagggccaccgcatggacaagcccgccaactgcacacacgacctgtacatgatcatgcgggagtgctggcatgccgcgccctcccagaggcccaccttcaagcagctggtggaggacctggaccgtgtccttaccgtgacgtccaccgacGTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGGGAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGGAGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAAAGTTCTAAAAGAAAAAGACCAACTTACCACAGATCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGCGTTTTGAGAAACAGAAAGAGGTGATCGAGGGCTACCGCAAGAACGAAGAGTCACTGAAGAAGTGCGTGGAGGATTACCTGGCAAGGATCACCCAGGAGGGCCAGAGGTACCAAGCCCTGAAGGCCCACGCGGAGGAGAAGCTGCAGCTGGCAAACGAGGAGATCGCCCAGGTCCGGAGCAAGGCCCAGGCGGAAGCGTTGGCCCTCCAGGCCAGCCTGAGGAAGGAGCAGATGCGCATCCAGTCGCTGGAGAAGACAGTGGAGCAGAAGACTAAAGAGAACGAGGAGCTGACCAGGATCTGCGACGACCTCATCTCCAAGATGGAGAAGATCTGA	chr4|+|[0]1793935-1794043[0]|[1]1799254-1799523[0]|[1]1799747-1799812[0]|[1]1801367-1801536[2]|[0]1801620-1801743[0]|[1]1801835-1802025[2]|[0]1802914-1803064[0]|[1]1804330-1804520[2]|[0]1804824-1804969[1]|[2]1805355-1805476[0]|[1]1805559-1805669[0]|[1]1805750-1805940[2]|[0]1806051-1806173[2]|[0]1806257-1806327[1]|[2]1806546-1806683[1]|[2]1806829-1806934[2]<==>chr4|+|[0]1739702-1739778[1]|[2]1739959-1740002[0]|[1]1740826-1740986[2]|[0]1744518-1744624[1]|[2]1744712-1744832[2]|[0]1744948-1745013[2]	MGAPACALALCVAVAIVAGASSESLGTEQRVVGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVYAGILSYGVGFFLFILVVAAVTLCRLRSPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTDVKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSMEKSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLANEEIAQVRSKAQAEALALQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISKMEKI*	FGFR3--TACC3	41	LH00995:25:23T55JLT4:1:1172:43553:20449,LH00995:25:23T55JLT4:1:1181:14535:26040,LH00995:25:23T55JLT4:1:1290:34946:20869,LH00995:25:23T55JLT4:1:1357:50098:3284,LH00995:25:23T55JLT4:1:1392:44921:28926,LH00995:25:23T55JLT4:1:1409:49071:13359,LH00995:25:23T55JLT4:1:1465:34582:4881,LH00995:25:23T55JLT4:1:2129:44953:11411,LH00995:25:23T55JLT4:1:2141:16953:20757,LH00995:25:23T55JLT4:1:2147:21767:2780,LH00995:25:23T55JLT4:1:2192:27624:12056,LH00995:25:23T55JLT4:1:2218:50948:12406,LH00995:25:23T55JLT4:1:2221:13693:24807,LH00995:25:23T55JLT4:1:2235:4406:2443,LH00995:25:23T55JLT4:1:2336:33595:22509,LH00995:25:23T55JLT4:1:2360:32130:23448,LH00995:25:23T55JLT4:1:2378:5490:13933,LH00995:25:23T55JLT4:1:2420:22058:2892,LH00995:25:23T55JLT4:1:2488:9486:11719,LH00995:25:23T55JLT4:2:1135:8839:13765,LH00995:25:23T55JLT4:2:1150:37276:15489,LH00995:25:23T55JLT4:2:1281:48949:28842,LH00995:25:23T55JLT4:2:1396:42761:24260,LH00995:25:23T55JLT4:2:1421:44597:24218,LH00995:25:23T55JLT4:2:2109:25917:23223,LH00995:25:23T55JLT4:2:2110:29113:15503,LH00995:25:23T55JLT4:2:2364:37267:25087,LH00995:25:23T55JLT4:2:2460:27381:27749,LH00995:25:23T55JLT4:3:1126:40495:15657,LH00995:25:23T55JLT4:3:1268:5692:7249,LH00995:25:23T55JLT4:3:1341:12755:4909,LH00995:25:23T55JLT4:3:1438:48569:15489,LH00995:25:23T55JLT4:3:1477:49419:13597,LH00995:25:23T55JLT4:3:2363:37292:12658,LH00995:25:23T55JLT4:3:2387:16015:21906,LH00995:25:23T55JLT4:4:1411:8111:24695,LH00995:25:23T55JLT4:4:2175:6250:12868,LH00995:25:23T55JLT4:5:1352:6809:28240,LH00995:25:23T55JLT4:5:2381:37178:23700,LH00995:25:23T55JLT4:6:1195:11671:13177,LH00995:25:23T55JLT4:6:1246:40245:24779	YES_LDAS	GT	1.8892	chr4:1806934:+	FGFR3^ENSG00000068078.20	I-set|48-110|6.2e-06^ig|49-110|5.6e-05^Ig_3|51-110|1.4e-06^Ig_2|52-115|3.4e-06^V-set|53-80|4.4^C2-set_2|54-85|2.3^Ig_4|56-116|0.006^V-set|94-110|0.043^Ig_6|94-119|0.0043^V-set_CD47|97-111|4.6^ig|161-236|3.6e-11^V-set|164-192|0.27^I-set|166-245|2.5e-18^Ig_3|166-232|1.1e-15^Ig_2|166-240|6.1e-13^C2-set_2|170-195|3.4e-05^Ig_4|185-233|0.024^V-set|206-245|0.00013^V-set_CD47|208-245|0.00099^Ig_6|213-245|0.019^Ig_2|253-342|1.6e-06^I-set|260-355|4.5e-14^Ig_3|260-342|1.8e-13^V-set|260-356|1.1e-07^ig|264-348|2.3e-07^C2-set_2|268-291|0.35^V-set_CD47|274-343|0.026^Ig_4|321-340|1.3^Ig_6|323-341|0.33^FGFR3_TM|371-401|2.3e-17^PK_Tyr_Ser-Thr|474-750|6.3e-107^Pkinase|477-748|4.2e-47^Pkinase_fungal|592-687|1.8e-05	.	INFRAME	AG	1.7819	chr4:1739702:+	TACC3^ENSG00000013810.20	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"		False	chr4:1806934-chr4:1739702	41.0	0.0		41	1173_PCB	STAR-Fusion
fp_audit	1173_PCB	fusion	FGFR3--TACC3	FGFR3--TACC3	FGFR3--TACC3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_PCB	altera_exact	1173	clinical	patient	ovary	Ovarian				76	unknown			False	1173_PCB_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		34.40	35.00	45.47			AIH_Ext12_RNA	D01		False		dev_rna_exp0016_lib_s04	200.00		85.65	dev_rna_exp0016	D01		False		1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr4	chr4	FGFR3	TACC3	1806934	1739702	chr4:1806934-chr4:1739702	+,+	STAR-Fusion	1	0	29	0.2759	29	PASS	in-frame	FGFR3--TACC3	FGFR3--TACC3	"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"											ONLY_REF_SPLICE	YES_LDAS	1.7819	False	False	False	GT	AG	29		True		TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA;Klijn_CellLines																																								1	ENST00000340107.8	1-2280	ENST00000651472.1	1942-2517	0.2759	PASS	atgggcgcccctgcctgcgccctcgcgctctgcgtggccgtggccatcgtggccggcgcctcctcggagtccttggggacggagcagcgcgtcgtggggcgagcggcagaagtcccgggcccagagcccggccagcaggagcagttggtcttcggcagcggggatgctgtggagctgagctgtcccccgcccgggggtggtcccatggggcccactgtctgggtcaaggatggcacagggctggtgccctcggagcgtgtcctggtggggccccagcggctgcaggtgctgaatgcctcccacgaggactccggggcctacagctgccggcagcggctcacgcagcgcgtactgtgccacttcagtgtgcgggtgacagacgctccatcctcgggagatgacgaagacggggaggacgaggctgaggacacaggtgtggacacaggggccccttactggacacggcccgagcggatggacaagaagctgctggccgtgccggccgccaacaccgtccgcttccgctgcccagccgctggcaaccccactccctccatctcctggctgaagaacggcagggagttccgcggcgagcaccgcattggaggcatcaagctgcggcatcagcagtggagcctggtcatggaaagcgtggtgccctcggaccgcggcaactacacctgcgtcgtggagaacaagtttggcagcatccggcagacgtacacgctggacgtgctggagcgctccccgcaccggcccatcctgcaggcggggctgccggccaaccagacggcggtgctgggcagcgacgtggagttccactgcaaggtgtacagtgacgcacagccccacatccagtggctcaagcacgtggaggtgaatggcagcaaggtgggcccggacggcacaccctacgttaccgtgctcaagtcctggatcagtgagagtgtggaggccgacgtgcgcctccgcctggccaatgtgtcggagcgggacgggggcgagtacctctgtcgagccaccaatttcataggcgtggccgagaaggccttttggctgagcgttcacgggccccgagcagccgaggaggagctggtggaggctgacgaggcgggcagtgtgtatgcaggcatcctcagctacggggtgggcttcttcctgttcatcctggtggtggcggctgtgacgctctgccgcctgcgcagcccccccaagaaaggcctgggctcccccaccgtgcacaagatctcccgcttcccgctcaagcgacaggtgtccctggagtccaacgcgtccatgagctccaacacaccactggtgcgcatcgcaaggctgtcctcaggggagggccccacgctggccaatgtctccgagctcgagctgcctgccgaccccaaatgggagctgtctcgggcccggctgaccctgggcaagccccttggggagggctgcttcggccaggtggtcatggcggaggccatcggcattgacaaggaccgggccgccaagcctgtcaccgtagccgtgaagatgctgaaagacgatgccactgacaaggacctgtcggacctggtgtctgagatggagatgatgaagatgatcgggaaacacaaaaacatcatcaacctgctgggcgcctgcacgcagggcgggcccctgtacgtgctggtggagtacgcggccaagggtaacctgcgggagtttctgcgggcgcggcggcccccgggcctggactactccttcgacacctgcaagccgcccgaggagcagctcaccttcaaggacctggtgtcctgtgcctaccaggtggcccggggcatggagtacttggcctcccagaagtgcatccacagggacctggctgcccgcaatgtgctggtgaccgaggacaacgtgatgaagatcgcagacttcgggctggcccgggacgtgcacaacctcgactactacaagaagacgaccaacggccggctgcccgtgaagtggatggcgcctgaggccttgtttgaccgagtctacactcaccagagtgacgtctggtcctttggggtcctgctctgggagatcttcacgctggggggctccccgtaccccggcatccctgtggaggagctcttcaagctgctgaaggagggccaccgcatggacaagcccgccaactgcacacacgacctgtacatgatcatgcgggagtgctggcatgccgcgccctcccagaggcccaccttcaagcagctggtggaggacctggaccgtgtccttaccgtgacgtccaccgacGTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGGGAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGGAGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAGAAAGTTCTAAAAGAAAAAGACCAACTTACCACAGATCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGCGTTTTGAGAAACAGAAAGAGGTGATCGAGGGCTACCGCAAGAACGAAGAGTCACTGAAGAAGTGCGTGGAGGATTACCTGGCAAGGATCACCCAGGAGGGCCAGAGGTACCAAGCCCTGAAGGCCCACGCGGAGGAGAAGCTGCAGCTGGCAAACGAGGAGATCGCCCAGGTCCGGAGCAAGGCCCAGGCGGAAGCGTTGGCCCTCCAGGCCAGCCTGAGGAAGGAGCAGATGCGCATCCAGTCGCTGGAGAAGACAGTGGAGCAGAAGACTAAAGAGAACGAGGAGCTGACCAGGATCTGCGACGACCTCATCTCCAAGATGGAGAAGATCTGA	chr4|+|[0]1793935-1794043[0]|[1]1799254-1799523[0]|[1]1799747-1799812[0]|[1]1801367-1801536[2]|[0]1801620-1801743[0]|[1]1801835-1802025[2]|[0]1802914-1803064[0]|[1]1804330-1804520[2]|[0]1804824-1804969[1]|[2]1805355-1805476[0]|[1]1805559-1805669[0]|[1]1805750-1805940[2]|[0]1806051-1806173[2]|[0]1806257-1806327[1]|[2]1806546-1806683[1]|[2]1806829-1806934[2]<==>chr4|+|[0]1739702-1739778[1]|[2]1739959-1740002[0]|[1]1740826-1740986[2]|[0]1744518-1744624[1]|[2]1744712-1744832[2]|[0]1744948-1745013[2]	MGAPACALALCVAVAIVAGASSESLGTEQRVVGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVYAGILSYGVGFFLFILVVAAVTLCRLRSPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTDVKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSMEKSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLANEEIAQVRSKAQAEALALQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISKMEKI*	FGFR3--TACC3	29	LH00995:25:23T55JLT4:1:1274:4325:19762,LH00995:25:23T55JLT4:1:1425:14009:16694,LH00995:25:23T55JLT4:1:2155:38578:9786,LH00995:25:23T55JLT4:1:2240:21427:11551,LH00995:25:23T55JLT4:1:2260:19656:21150,LH00995:25:23T55JLT4:1:2326:43003:28969,LH00995:25:23T55JLT4:1:2397:12876:7418,LH00995:25:23T55JLT4:1:2437:11711:1112,LH00995:25:23T55JLT4:2:1386:11032:24933,LH00995:25:23T55JLT4:2:1425:5538:15279,LH00995:25:23T55JLT4:2:2251:43934:10010,LH00995:25:23T55JLT4:2:2482:35512:2429,LH00995:25:23T55JLT4:3:1112:27519:23588,LH00995:25:23T55JLT4:3:1132:27462:10907,LH00995:25:23T55JLT4:3:1202:3953:13345,LH00995:25:23T55JLT4:3:1285:50940:19762,LH00995:25:23T55JLT4:3:1313:9292:23518,LH00995:25:23T55JLT4:3:2158:23862:16722,LH00995:25:23T55JLT4:4:1149:34468:10907,LH00995:25:23T55JLT4:4:1313:17552:29025,LH00995:25:23T55JLT4:4:1479:3848:18179,LH00995:25:23T55JLT4:4:2136:30569:15895,LH00995:25:23T55JLT4:4:2145:8742:10823,LH00995:25:23T55JLT4:4:2202:38756:27553,LH00995:25:23T55JLT4:6:2429:3451:6899,LH00995:25:23T55JLT4:7:2221:9721:4587,LH00995:25:23T55JLT4:7:2266:6954:24905,LH00995:25:23T55JLT4:8:1194:30917:29109,LH00995:25:23T55JLT4:8:1470:26030:14059	YES_LDAS	GT	1.8892	chr4:1806934:+	FGFR3^ENSG00000068078.20	I-set|48-110|6.2e-06^ig|49-110|5.6e-05^Ig_3|51-110|1.4e-06^Ig_2|52-115|3.4e-06^V-set|53-80|4.4^C2-set_2|54-85|2.3^Ig_4|56-116|0.006^V-set|94-110|0.043^Ig_6|94-119|0.0043^V-set_CD47|97-111|4.6^ig|161-236|3.6e-11^V-set|164-192|0.27^I-set|166-245|2.5e-18^Ig_3|166-232|1.1e-15^Ig_2|166-240|6.1e-13^C2-set_2|170-195|3.4e-05^Ig_4|185-233|0.024^V-set|206-245|0.00013^V-set_CD47|208-245|0.00099^Ig_6|213-245|0.019^Ig_2|253-342|1.6e-06^I-set|260-355|4.5e-14^Ig_3|260-342|1.8e-13^V-set|260-356|1.1e-07^ig|264-348|2.3e-07^C2-set_2|268-291|0.35^V-set_CD47|274-343|0.026^Ig_4|321-340|1.3^Ig_6|323-341|0.33^FGFR3_TM|371-401|2.3e-17^PK_Tyr_Ser-Thr|474-750|6.3e-107^Pkinase|477-748|4.2e-47^Pkinase_fungal|592-687|1.8e-05	.	INFRAME	AG	1.7819	chr4:1739702:+	TACC3^ENSG00000013810.20	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""Klijn_CellLines"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr4:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[48122]""]"		False	chr4:1806934-chr4:1739702	29.0	0.0		29	1173_PCB	STAR-Fusion
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38584945	chr21:41508081-chr21:38584945	-,-	Arriba	1	0	6		6	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:medium;duplicates(6)	medium	deletion	5'UTR/splice-site	5'UTR/splice-site	10	652	6.0	0.0	0.0	0.0									0	6		duplicates(6)		FAIL		False	chr21:41508081	chr21:38584945	chr21:41508081-chr21:38584945	.	.	medium	10	652	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(6)	GGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAAGACAAATGACTCACAGAGAAAAAAGATG	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:1:2358:45932:29137,LH00995:25:23T55JLT4:2:2327:21767:13793,LH00995:25:23T55JLT4:3:1471:16800:8973,LH00995:25:23T55JLT4:4:1144:17188:2079,LH00995:25:23T55JLT4:4:2115:4471:1378,LH00995:25:23T55JLT4:4:2361:15991:13737,LH00995:25:23T55JLT4:5:2279:9017:17044,LH00995:25:23T55JLT4:6:2214:22236:4265,LH00995:25:23T55JLT4:7:1182:45673:20169,LH00995:25:23T55JLT4:7:2374:13046:15615,LH00995:25:23T55JLT4:8:2137:24760:26628,LH00995:25:23T55JLT4:8:2458:5538:25255	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	5'UTR/splice-site	0	6	-/-	-/-	.	6	ENST00000332149	ENST00000442448	deletion	0.0	0.00911854103343465	0.004559270516717325																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38445621	chr21:41508081-chr21:38445621	-,-	Arriba	1	0	3		3	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:medium;duplicates(2)	medium	deletion	5'UTR/splice-site	CDS/splice-site	10	1576	2.0	0.0	0.0	0.0									0	3		duplicates(2)		FAIL		False	chr21:41508081	chr21:38445621	chr21:41508081-chr21:38445621	.	.	medium	10	1576	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(2)	GCGGGGAGCGCCGCCTGGAGCGCGGCAG|GAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCCTACGGAACGCCACACCTGGC	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:1:2435:11129:24765,LH00995:25:23T55JLT4:3:1151:18636:3550,LH00995:25:23T55JLT4:5:2433:35852:9856,LH00995:25:23T55JLT4:6:1435:34428:22355,LH00995:25:23T55JLT4:8:1260:49241:18193	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	CDS/splice-site	0	3	-/-	-/-	.	3	ENST00000332149	ENST00000442448	deletion	0.0	0.0018999366687777073	0.0009499683343888537																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41506445	38584945	chr21:41506445-chr21:38584945	-,-	Arriba	1	0	1		1	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(3)	low	deletion	5'UTR/splice-site	5'UTR/splice-site	4	652	3.0	0.0	0.0	0.0									1	0		duplicates(3)		FAIL		False	chr21:41506445	chr21:38584945	chr21:41506445-chr21:38584945	.	.	low	4	652	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	CCCACCTTTACTGAGTGCTTTTGAAGAAGTAGGACCTGCCCTGCTCCGCTACAGAACTACTGGACAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAA	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:2:1466:51643:1308,LH00995:25:23T55JLT4:6:1170:39290:3004,LH00995:25:23T55JLT4:7:2217:46951:23252,LH00995:25:23T55JLT4:7:2294:12633:20169	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	5'UTR/splice-site	1	0	-/-	-/-	.	1	ENST00000455813	ENST00000442448	deletion	0.2	0.0	0.1																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41507950	38584945	chr21:41507950-chr21:38584945	-,-	Arriba	1	0	1		1	PASS	out-of-frame	TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(1)	low	deletion	CDS/splice-site	5'UTR/splice-site	9	652	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr21:41507950	chr21:38584945	chr21:41507950-chr21:38584945	.	.	low	9	652	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	CGCCGATGCCCCCTGCCCCGCCCGGAGGTGAAAGtGGGTGTGAGGAGCGCGGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAAGACAAATG	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	MPPAPPGGESGCEERGAA|gysrifgdprkavltksktn	LH00995:25:23T55JLT4:1:2367:3103:29697,LH00995:25:23T55JLT4:6:1168:26783:11243	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	-/-	-/-	.	1	ENST00000398585	ENST00000442448	deletion	0.1	0.0	0.05																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	TMPRSS2	ERG	41508081	38445621	chr21:41508081-chr21:38445621	-,-	Arriba	1	0	3		3	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:medium;duplicates(1)	medium	deletion	5'UTR/splice-site	CDS/splice-site	33	1717	1.0	0.0	0.0	0.0									1	2		duplicates(1)		FAIL		False	chr21:41508081	chr21:38445621	chr21:41508081-chr21:38445621	.	.	medium	33	1717	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(1)	GCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG|GAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCCTACGGAACGCC	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:6:1184:19122:29501,LH00995:25:23T55JLT4:6:1216:29364:23448,LH00995:25:23T55JLT4:6:1275:49168:24429,LH00995:25:23T55JLT4:8:2315:20707:5736	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	CDS/splice-site	1	2	-/-	-/-	.	3	ENST00000332149	ENST00000442448	deletion	0.029411764705882353	0.0011634671320535194	0.015287615918967936																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	TMPRSS2	ERG	41508081	38584945	chr21:41508081-chr21:38584945	-,-	Arriba	1	0	2		2	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(2)	low	deletion	5'UTR/splice-site	5'UTR/splice-site	33	868	2.0	0.0	0.0	0.0									0	2		duplicates(2)		FAIL		False	chr21:41508081	chr21:38584945	chr21:41508081-chr21:38584945	.	.	low	33	868	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(2)	GGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAgAAGCAAGAC	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:5:1357:13928:28016,LH00995:25:23T55JLT4:8:1304:30075:22299,LH00995:25:23T55JLT4:8:2318:8556:3326,LH00995:25:23T55JLT4:8:2451:10684:8805	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	5'UTR/splice-site	0	2	-/-	-/-	.	2	ENST00000332149	ENST00000442448	deletion	0.0	0.0022988505747126436	0.0011494252873563218																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	TMPRSS2	ERG	41507950	38584945	chr21:41507950-chr21:38584945	-,-	Arriba	1	0	1		1	PASS	out-of-frame	TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(1)	low	deletion	CDS/splice-site	5'UTR/splice-site	12	868	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr21:41507950	chr21:38584945	chr21:41507950-chr21:38584945	.	.	low	12	868	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	CCTGGGCGCCTGGGACCCGCCGATGCCCCCTGCCCCGCCCGGAGGTGAAAGCGGGTGTGAGGAGCGCGGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAAG	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	MPPAPPGGESGCEERGAA|gysrifgdprkavltks	LH00995:25:23T55JLT4:2:1465:43003:19356,LH00995:25:23T55JLT4:3:1303:49127:20435	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	-/-	-/-	.	1	ENST00000398585	ENST00000442448	deletion	0.07692307692307693	0.0	0.038461538461538464																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38584945	chr21:41508081-chr21:38584945	-,-	STAR-Fusion	1	0	6	0.0243	6	FAIL		TMPRSS2--ERG	ERG--TMPRSS2	"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	6			Read count too low: 6 < 8	TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA																																								0	.	.	.	.	0.0243	FAIL	.	.	.	TMPRSS2--ERG	6	LH00995:25:23T55JLT4:1:2358:45932:29137,LH00995:25:23T55JLT4:2:2327:21767:13793,LH00995:25:23T55JLT4:4:1144:17188:2079,LH00995:25:23T55JLT4:4:2115:4471:1378,LH00995:25:23T55JLT4:7:2374:13046:15615,LH00995:25:23T55JLT4:8:2137:24760:26628	YES_LDAS	GT	1.6895	chr21:41508081:-	TMPRSS2^ENSG00000184012.14	.	.	.	AG	1.9219	chr21:38584945:-	ERG^ENSG00000157554.19	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"		False	chr21:41508081-chr21:38584945	6.0	0.0	Read count too low: 6 < 8	6	1173_Q7O	STAR-Fusion
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38445621	chr21:41508081-chr21:38445621	-,-	STAR-Fusion	1	0	3	0.0122	3	FAIL		TMPRSS2--ERG	ERG--TMPRSS2	"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	3			Read count too low: 3 < 8	TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA																																								0	.	.	.	.	0.0122	FAIL	.	.	.	TMPRSS2--ERG	3	LH00995:25:23T55JLT4:1:2435:11129:24765,LH00995:25:23T55JLT4:3:1151:18636:3550,LH00995:25:23T55JLT4:5:2433:35852:9856	YES_LDAS	GT	1.6895	chr21:41508081:-	TMPRSS2^ENSG00000184012.14	.	.	.	AG	1.9656	chr21:38445621:-	ERG^ENSG00000157554.19	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"		False	chr21:41508081-chr21:38445621	3.0	0.0	Read count too low: 3 < 8	3	1173_Q7O	STAR-Fusion
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	TMPRSS2	ERG	41508081	38445621	chr21:41508081-chr21:38445621	-,-	Arriba	1	0	3		3	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:medium;duplicates(1)	medium	deletion	5'UTR/splice-site	CDS/splice-site	33	1717	1.0	0.0	0.0	0.0									1	2		duplicates(1)		FAIL		False	chr21:41508081	chr21:38445621	chr21:41508081-chr21:38445621	.	.	medium	33	1717	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(1)	GCAGGAGGCGGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG|GAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCCTACGGAACGCC	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:6:1184:19122:29501,LH00995:25:23T55JLT4:6:1216:29364:23448,LH00995:25:23T55JLT4:6:1275:49168:24429,LH00995:25:23T55JLT4:8:2315:20707:5736	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	CDS/splice-site	1	2	-/-	-/-	.	3	ENST00000332149	ENST00000442448	deletion	0.029411764705882353	0.0011634671320535194	0.015287615918967936																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	TMPRSS2	ERG	41508081	38584945	chr21:41508081-chr21:38584945	-,-	Arriba	1	0	2		2	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(2)	low	deletion	5'UTR/splice-site	5'UTR/splice-site	33	868	2.0	0.0	0.0	0.0									0	2		duplicates(2)		FAIL		False	chr21:41508081	chr21:38584945	chr21:41508081-chr21:38584945	.	.	low	33	868	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(2)	GGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAgAAGCAAGAC	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:5:1357:13928:28016,LH00995:25:23T55JLT4:8:1304:30075:22299,LH00995:25:23T55JLT4:8:2318:8556:3326,LH00995:25:23T55JLT4:8:2451:10684:8805	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	5'UTR/splice-site	0	2	-/-	-/-	.	2	ENST00000332149	ENST00000442448	deletion	0.0	0.0022988505747126436	0.0011494252873563218																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	TMPRSS2	ERG	41507950	38584945	chr21:41507950-chr21:38584945	-,-	Arriba	1	0	1		1	PASS	out-of-frame	TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(1)	low	deletion	CDS/splice-site	5'UTR/splice-site	12	868	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr21:41507950	chr21:38584945	chr21:41507950-chr21:38584945	.	.	low	12	868	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	CCTGGGCGCCTGGGACCCGCCGATGCCCCCTGCCCCGCCCGGAGGTGAAAGCGGGTGTGAGGAGCGCGGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAAG	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	MPPAPPGGESGCEERGAA|gysrifgdprkavltks	LH00995:25:23T55JLT4:2:1465:43003:19356,LH00995:25:23T55JLT4:3:1303:49127:20435	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	-/-	-/-	.	1	ENST00000398585	ENST00000442448	deletion	0.07692307692307693	0.0	0.038461538461538464																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38584945	chr21:41508081-chr21:38584945	-,-	Arriba	1	0	6		6	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:medium;duplicates(6)	medium	deletion	5'UTR/splice-site	5'UTR/splice-site	10	652	6.0	0.0	0.0	0.0									0	6		duplicates(6)		FAIL		False	chr21:41508081	chr21:38584945	chr21:41508081-chr21:38584945	.	.	medium	10	652	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(6)	GGAGGCGGAGGCGGAGGGCGAGGGGCGGGGAGCGCCGCCTGGAGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAAGACAAATGACTCACAGAGAAAAAAGATG	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:1:2358:45932:29137,LH00995:25:23T55JLT4:2:2327:21767:13793,LH00995:25:23T55JLT4:3:1471:16800:8973,LH00995:25:23T55JLT4:4:1144:17188:2079,LH00995:25:23T55JLT4:4:2115:4471:1378,LH00995:25:23T55JLT4:4:2361:15991:13737,LH00995:25:23T55JLT4:5:2279:9017:17044,LH00995:25:23T55JLT4:6:2214:22236:4265,LH00995:25:23T55JLT4:7:1182:45673:20169,LH00995:25:23T55JLT4:7:2374:13046:15615,LH00995:25:23T55JLT4:8:2137:24760:26628,LH00995:25:23T55JLT4:8:2458:5538:25255	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	5'UTR/splice-site	0	6	-/-	-/-	.	6	ENST00000332149	ENST00000442448	deletion	0.0	0.00911854103343465	0.004559270516717325																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38445621	chr21:41508081-chr21:38445621	-,-	Arriba	1	0	3		3	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:medium;duplicates(2)	medium	deletion	5'UTR/splice-site	CDS/splice-site	10	1576	2.0	0.0	0.0	0.0									0	3		duplicates(2)		FAIL		False	chr21:41508081	chr21:38445621	chr21:41508081-chr21:38445621	.	.	medium	10	1576	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(2)	GCGGGGAGCGCCGCCTGGAGCGCGGCAG|GAAGCCTTATCAGTTGTGAGTGAGGACCAGTCGTTGTTTGAGTGTGCCTACGGAACGCCACACCTGGC	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:1:2435:11129:24765,LH00995:25:23T55JLT4:3:1151:18636:3550,LH00995:25:23T55JLT4:5:2433:35852:9856,LH00995:25:23T55JLT4:6:1435:34428:22355,LH00995:25:23T55JLT4:8:1260:49241:18193	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	CDS/splice-site	0	3	-/-	-/-	.	3	ENST00000332149	ENST00000442448	deletion	0.0	0.0018999366687777073	0.0009499683343888537																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41506445	38584945	chr21:41506445-chr21:38584945	-,-	Arriba	1	0	1		1	PASS		TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(3)	low	deletion	5'UTR/splice-site	5'UTR/splice-site	4	652	3.0	0.0	0.0	0.0									1	0		duplicates(3)		FAIL		False	chr21:41506445	chr21:38584945	chr21:41506445-chr21:38584945	.	.	low	4	652	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	CCCACCTTTACTGAGTGCTTTTGAAGAAGTAGGACCTGCCCTGCTCCGCTACAGAACTACTGGACAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAA	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	.	LH00995:25:23T55JLT4:2:1466:51643:1308,LH00995:25:23T55JLT4:6:1170:39290:3004,LH00995:25:23T55JLT4:7:2217:46951:23252,LH00995:25:23T55JLT4:7:2294:12633:20169	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	5'UTR/splice-site	5'UTR/splice-site	1	0	-/-	-/-	.	1	ENST00000455813	ENST00000442448	deletion	0.2	0.0	0.1																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41507950	38584945	chr21:41507950-chr21:38584945	-,-	Arriba	1	0	1		1	PASS	out-of-frame	TMPRSS2--ERG	ERG--TMPRSS2	confidence:low;duplicates(1)	low	deletion	CDS/splice-site	5'UTR/splice-site	9	652	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr21:41507950	chr21:38584945	chr21:41507950-chr21:38584945	.	.	low	9	652	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	CGCCGATGCCCCCTGCCCCGCCCGGAGGTGAAAGtGGGTGTGAGGAGCGCGGCGCGGCAG|GTTATTCCAGGATCTTTGGAGACCCGAGGAAAGCCGTGTTGACCAAAAGCAAGACAAATG	TMPRSS2	ERG	ENSG00000184012	ENSG00000157554	MPPAPPGGESGCEERGAA|gysrifgdprkavltksktn	LH00995:25:23T55JLT4:1:2367:3103:29697,LH00995:25:23T55JLT4:6:1168:26783:11243	out-of-frame	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	0	-/-	-/-	.	1	ENST00000398585	ENST00000442448	deletion	0.1	0.0	0.05																																						1173_Q7O	Arriba
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38584945	chr21:41508081-chr21:38584945	-,-	STAR-Fusion	1	0	6	0.0243	6	FAIL		TMPRSS2--ERG	ERG--TMPRSS2	"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	6			Read count too low: 6 < 8	TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA																																								0	.	.	.	.	0.0243	FAIL	.	.	.	TMPRSS2--ERG	6	LH00995:25:23T55JLT4:1:2358:45932:29137,LH00995:25:23T55JLT4:2:2327:21767:13793,LH00995:25:23T55JLT4:4:1144:17188:2079,LH00995:25:23T55JLT4:4:2115:4471:1378,LH00995:25:23T55JLT4:7:2374:13046:15615,LH00995:25:23T55JLT4:8:2137:24760:26628	YES_LDAS	GT	1.6895	chr21:41508081:-	TMPRSS2^ENSG00000184012.14	.	.	.	AG	1.9219	chr21:38584945:-	ERG^ENSG00000157554.19	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"		False	chr21:41508081-chr21:38584945	6.0	0.0	Read count too low: 6 < 8	6	1173_Q7O	STAR-Fusion
fp_audit	1173_Q7O	fusion	ERG--TMPRSS2	TMPRSS2--ERG	ERG--TMPRSS2	FP	FP		Arriba		dev_rna_exp0016	1173_Q7O	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				54	unknown			False	1173_Q7O_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		31.40	38.00	39.33			AIH_Ext13_RNA	G02		False		dev_rna_exp0016_lib_s90	100.00		88.32	dev_rna_exp0016	B12		False		1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	TMPRSS2	ERG	41508081	38445621	chr21:41508081-chr21:38445621	-,-	STAR-Fusion	1	0	3	0.0122	3	FAIL		TMPRSS2--ERG	ERG--TMPRSS2	"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	3			Read count too low: 3 < 8	TCGA_StarF2019;ChimerKB;ChimerPub;ChimerSeq;Cosmic;CCLE_StarF2019;DEEPEST2019;GUO2018;TumorFusionsNAR2018;YOSHIHARA_TCGA																																								0	.	.	.	.	0.0122	FAIL	.	.	.	TMPRSS2--ERG	3	LH00995:25:23T55JLT4:1:2435:11129:24765,LH00995:25:23T55JLT4:3:1151:18636:3550,LH00995:25:23T55JLT4:5:2433:35852:9856	YES_LDAS	GT	1.6895	chr21:41508081:-	TMPRSS2^ENSG00000184012.14	.	.	.	AG	1.9656	chr21:38445621:-	ERG^ENSG00000157554.19	0	.	ONLY_REF_SPLICE		"[""ChimerKB"",""Larsson_TCGA"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""YOSHIHARA_TCGA"",""chimerdb_pubmed"",""DEEPEST2019"",""GUO2018CR_TCGA"",""ChimerPub"",""TumorFusionsNAR2018"",""Cosmic"",""INTRACHROMOSOMAL[chr21:2.80Mb]""]"		False	chr21:41508081-chr21:38445621	3.0	0.0	Read count too low: 3 < 8	3	1173_Q7O	STAR-Fusion
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	ERG	AP001610	38400574	41560452	chr21:38400574-chr21:41560452	-,-	Arriba	1	0	8		8	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:medium;duplicates(14)	medium	duplication	CDS/splice-site	exon/splice-site	16563	1	14.0	0.0	0.0	0.0									8	0	False	duplicates(14)		FAIL		False	chr21:38400574	chr21:41560452	chr21:38400574-chr21:41560452	.	.	medium	16563	1	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(14)	TCTCTCACATCTCCACTACCTCAGAGAGA___CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG___GGGGTGCAGCTTTTATTTTCCCAAATACTTCAGTATATCCTGAAGCTACGCAAAGAATTACAACTAGGCCAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCGGGGCAGGGATGGTGTCTTACTCATCCTGGGC	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	LSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRP|gihignscsknnyl*	LH00995:25:23T55JLT4:1:2133:35350:19300,LH00995:25:23T55JLT4:2:1214:40900:18487,LH00995:25:23T55JLT4:2:1457:38691:17128,LH00995:25:23T55JLT4:3:1147:43715:21038,LH00995:25:23T55JLT4:3:1191:44913:3438,LH00995:25:23T55JLT4:3:1191:44929:3438,LH00995:25:23T55JLT4:3:1287:9066:15895,LH00995:25:23T55JLT4:3:2280:11679:7306,LH00995:25:23T55JLT4:4:2171:21484:3410,LH00995:25:23T55JLT4:4:2453:33902:28030,LH00995:25:23T55JLT4:5:1111:19291:14802,LH00995:25:23T55JLT4:5:2196:26087:11327,LH00995:25:23T55JLT4:5:2275:33870:24555,LH00995:25:23T55JLT4:6:1129:22932:15447,LH00995:25:23T55JLT4:6:1289:42664:14200,LH00995:25:23T55JLT4:6:1467:31426:1603,LH00995:25:23T55JLT4:6:1486:44694:6002,LH00995:25:23T55JLT4:6:2428:24663:17380,LH00995:25:23T55JLT4:7:2320:13362:7221,LH00995:25:23T55JLT4:7:2416:18733:16301,LH00995:25:23T55JLT4:8:1221:31257:7894,LH00995:25:23T55JLT4:8:1312:5838:9800	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	8	0	-/-	-/-	.	8	ENST00000417133	ENST00000415820	duplication	0.000482771106149297	0.0	0.0002413855530746485																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	ERG	AP001610	38402557	41560452	chr21:38402557-chr21:41560452	-,-	Arriba	1	0	3		3	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:medium	medium	duplication	CDS/splice-site	exon/splice-site	41753	1													2	1	False			FAIL		False	chr21:38402557	chr21:41560452	chr21:38402557-chr21:41560452	.	.	medium	41753	1	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCGGGGCAGGGATGGTGTCTTACTCATCCTGGGCTTCAGGACATCTGTGTAAC	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	PLPHLTSDDVDKALQNSPRLMHARNT|gihignscsknnyl*	LH00995:25:23T55JLT4:5:2123:42437:12910,LH00995:25:23T55JLT4:8:1264:23312:23784,LH00995:25:23T55JLT4:4:2478:32745:1925	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	2	1	-/-	-/-	.	3	ENST00000442448	ENST00000415820	duplication	4.7898455274817386e-05	0.5	0.25002394922763743																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	ERG	AP001610	38400574	41560452	chr21:38400574-chr21:41560452	-,-	Arriba	1	0	8		8	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:medium;duplicates(6)	medium	duplication	CDS/splice-site	exon/splice-site	15498	1	6.0	0.0	0.0	0.0									7	1	False	duplicates(6)		FAIL		False	chr21:38400574	chr21:41560452	chr21:38400574-chr21:41560452	.	.	medium	15498	1	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(6)	CCCAGCTACAACGCCGACATCCTTCTCTCACATCTCCACTACCTCAGAGAGA___CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG___GGGGTGCAGCTTTTATTTTCCCAAATACTTCAGTATATCCTGAAGCTACGCAAAGAATTACAACTAGGCCAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCGGGGCAGGGATGGTGTCTTACTCATCCTGGGCTTCAGGACATCTGTGTAACA	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRP|gihignscsknnyl*	LH00995:25:23T55JLT4:1:2169:19995:23840,LH00995:25:23T55JLT4:1:2179:16403:12266,LH00995:25:23T55JLT4:2:1166:48415:10991,LH00995:25:23T55JLT4:2:1198:22778:3186,LH00995:25:23T55JLT4:2:1252:30771:14424,LH00995:25:23T55JLT4:3:1194:19898:23027,LH00995:25:23T55JLT4:3:1194:19906:23013,LH00995:25:23T55JLT4:3:1194:19914:23027,LH00995:25:23T55JLT4:5:2473:30820:9968,LH00995:25:23T55JLT4:6:1228:2836:26180,LH00995:25:23T55JLT4:6:2238:16832:26713,LH00995:25:23T55JLT4:7:2141:5894:8693,LH00995:25:23T55JLT4:7:2416:1372:4223,LH00995:25:23T55JLT4:3:1282:36814:7740	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	7	1	-/-	-/-	.	8	ENST00000417133	ENST00000415820	duplication	0.0004514672686230248	0.5	0.2502257336343115																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	ERG	AP001610	38402557	41560452	chr21:38402557-chr21:41560452	-,-	Arriba	1	0	2		2	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:low	low	duplication	CDS/splice-site	exon/splice-site	29208	1													2	0	False			FAIL		False	chr21:38402557	chr21:41560452	chr21:38402557-chr21:41560452	.	.	low	29208	1	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	.	CTCCACTACCTCAGAGAGA___CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCG	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	LHYLRETPLPHLTSDDVDKALQNSPRLMHARNT|gihignscsknnyl*	LH00995:25:23T55JLT4:2:2215:41151:5162,LH00995:25:23T55JLT4:5:2446:45487:28674	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	2	0	-/-	-/-	.	2	ENST00000442448	ENST00000415820	duplication	6.846970215679562e-05	0.0	3.423485107839781e-05																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	ERG	AP001610	38400574	41560452	chr21:38400574-chr21:41560452	-,-	Arriba	1	0	8		8	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:medium;duplicates(6)	medium	duplication	CDS/splice-site	exon/splice-site	15498	1	6.0	0.0	0.0	0.0									7	1	False	duplicates(6)		FAIL		False	chr21:38400574	chr21:41560452	chr21:38400574-chr21:41560452	.	.	medium	15498	1	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(6)	CCCAGCTACAACGCCGACATCCTTCTCTCACATCTCCACTACCTCAGAGAGA___CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG___GGGGTGCAGCTTTTATTTTCCCAAATACTTCAGTATATCCTGAAGCTACGCAAAGAATTACAACTAGGCCAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCGGGGCAGGGATGGTGTCTTACTCATCCTGGGCTTCAGGACATCTGTGTAACA	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRP|gihignscsknnyl*	LH00995:25:23T55JLT4:1:2169:19995:23840,LH00995:25:23T55JLT4:1:2179:16403:12266,LH00995:25:23T55JLT4:2:1166:48415:10991,LH00995:25:23T55JLT4:2:1198:22778:3186,LH00995:25:23T55JLT4:2:1252:30771:14424,LH00995:25:23T55JLT4:3:1194:19898:23027,LH00995:25:23T55JLT4:3:1194:19906:23013,LH00995:25:23T55JLT4:3:1194:19914:23027,LH00995:25:23T55JLT4:5:2473:30820:9968,LH00995:25:23T55JLT4:6:1228:2836:26180,LH00995:25:23T55JLT4:6:2238:16832:26713,LH00995:25:23T55JLT4:7:2141:5894:8693,LH00995:25:23T55JLT4:7:2416:1372:4223,LH00995:25:23T55JLT4:3:1282:36814:7740	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	7	1	-/-	-/-	.	8	ENST00000417133	ENST00000415820	duplication	0.0004514672686230248	0.5	0.2502257336343115																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	ERG	AP001610	38402557	41560452	chr21:38402557-chr21:41560452	-,-	Arriba	1	0	2		2	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:low	low	duplication	CDS/splice-site	exon/splice-site	29208	1													2	0	False			FAIL		False	chr21:38402557	chr21:41560452	chr21:38402557-chr21:41560452	.	.	low	29208	1	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	.	CTCCACTACCTCAGAGAGA___CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCG	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	LHYLRETPLPHLTSDDVDKALQNSPRLMHARNT|gihignscsknnyl*	LH00995:25:23T55JLT4:2:2215:41151:5162,LH00995:25:23T55JLT4:5:2446:45487:28674	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	2	0	-/-	-/-	.	2	ENST00000442448	ENST00000415820	duplication	6.846970215679562e-05	0.0	3.423485107839781e-05																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	ERG	AP001610	38400574	41560452	chr21:38400574-chr21:41560452	-,-	Arriba	1	0	8		8	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:medium;duplicates(14)	medium	duplication	CDS/splice-site	exon/splice-site	16563	1	14.0	0.0	0.0	0.0									8	0	False	duplicates(14)		FAIL		False	chr21:38400574	chr21:41560452	chr21:38400574-chr21:41560452	.	.	medium	16563	1	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(14)	TCTCTCACATCTCCACTACCTCAGAGAGA___CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG___GGGGTGCAGCTTTTATTTTCCCAAATACTTCAGTATATCCTGAAGCTACGCAAAGAATTACAACTAGGCCAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCGGGGCAGGGATGGTGTCTTACTCATCCTGGGC	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	LSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRP|gihignscsknnyl*	LH00995:25:23T55JLT4:1:2133:35350:19300,LH00995:25:23T55JLT4:2:1214:40900:18487,LH00995:25:23T55JLT4:2:1457:38691:17128,LH00995:25:23T55JLT4:3:1147:43715:21038,LH00995:25:23T55JLT4:3:1191:44913:3438,LH00995:25:23T55JLT4:3:1191:44929:3438,LH00995:25:23T55JLT4:3:1287:9066:15895,LH00995:25:23T55JLT4:3:2280:11679:7306,LH00995:25:23T55JLT4:4:2171:21484:3410,LH00995:25:23T55JLT4:4:2453:33902:28030,LH00995:25:23T55JLT4:5:1111:19291:14802,LH00995:25:23T55JLT4:5:2196:26087:11327,LH00995:25:23T55JLT4:5:2275:33870:24555,LH00995:25:23T55JLT4:6:1129:22932:15447,LH00995:25:23T55JLT4:6:1289:42664:14200,LH00995:25:23T55JLT4:6:1467:31426:1603,LH00995:25:23T55JLT4:6:1486:44694:6002,LH00995:25:23T55JLT4:6:2428:24663:17380,LH00995:25:23T55JLT4:7:2320:13362:7221,LH00995:25:23T55JLT4:7:2416:18733:16301,LH00995:25:23T55JLT4:8:1221:31257:7894,LH00995:25:23T55JLT4:8:1312:5838:9800	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	8	0	-/-	-/-	.	8	ENST00000417133	ENST00000415820	duplication	0.000482771106149297	0.0	0.0002413855530746485																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	AP001610--ERG	ERG--AP001610	AP001610--ERG	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	ERG	AP001610	38402557	41560452	chr21:38402557-chr21:41560452	-,-	Arriba	1	0	3		3	PASS	out-of-frame	ERG--AP001610	AP001610--ERG	confidence:medium	medium	duplication	CDS/splice-site	exon/splice-site	41753	1													2	1	False			FAIL		False	chr21:38402557	chr21:41560452	chr21:38402557-chr21:41560452	.	.	medium	41753	1	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	CTCCTCTTCCACATTTGACTTCAGATGATGTTGATAAAGCCTTACAAAACTCTCCACGGTTAATGCATGCTAGAAACACAG|GCATTCACATTGGCAACTCCTGTTCCAAGAATAATTATTTATGACAGATTTCAATTTTCGGGGCAGGGATGGTGTCTTACTCATCCTGGGCTTCAGGACATCTGTGTAAC	ERG	AP001610.3	ENSG00000157554	ENSG00000232806	PLPHLTSDDVDKALQNSPRLMHARNT|gihignscsknnyl*	LH00995:25:23T55JLT4:5:2123:42437:12910,LH00995:25:23T55JLT4:8:1264:23312:23784,LH00995:25:23T55JLT4:4:2478:32745:1925	out-of-frame	Sterile_alpha_motif_(SAM)/Pointed_domain(100%)|	CDS/splice-site	exon/splice-site	2	1	-/-	-/-	.	3	ENST00000442448	ENST00000415820	duplication	4.7898455274817386e-05	0.5	0.25002394922763743																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	ERG--PCSEAT	ERG--PCSEAT	ERG--PCSEAT	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	ERG	PCSEAT	38445404	41611957	chr21:38445404-chr21:41611957	-,-	Arriba	1	0	13		13	PASS	out-of-frame	ERG--PCSEAT	ERG--PCSEAT	confidence:medium;duplicates(24),mismatches(3)	medium	duplication	CDS/splice-site	intergenic	43235	4	24.0	3.0	0.0	0.0									11	2	False	duplicates(24),mismatches(3)		FAIL		False	chr21:38445404	chr21:41611957	chr21:38445404-chr21:41611957	.	.	medium	43235	4	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(24),mismatches(3)	CGACTATGGACAGACTTCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCCAGGGTCACCATCAAAATGGAATGTAACCCTAGCCAGGTGAATGGCTCAAG|GACGCAGAGTGCCTCCAGATGTGATTGAAAAATTAAGGTGATATAAAACACAGTGCAATAAAACACACCGTCGTATACACTTAAGG	ERG	PCSEAT(29070),LINC00111(67224)	ENSG00000157554	.	DYGQTSKMSPRVPQQDWLSQPPARVTIKMECNPSQVNGSr|tqsasrcd*	LH00995:25:23T55JLT4:1:1335:48003:18179,LH00995:25:23T55JLT4:1:1344:14195:14214,LH00995:25:23T55JLT4:1:2254:28611:16988,LH00995:25:23T55JLT4:2:1272:29218:4839,LH00995:25:23T55JLT4:2:1311:1396:3508,LH00995:25:23T55JLT4:2:1343:5627:3578,LH00995:25:23T55JLT4:2:1476:32187:2667,LH00995:25:23T55JLT4:3:1130:5263:22537,LH00995:25:23T55JLT4:3:1135:24275:20547,LH00995:25:23T55JLT4:3:1209:45228:15138,LH00995:25:23T55JLT4:4:1369:15473:25423,LH00995:25:23T55JLT4:4:1447:22155:3648,LH00995:25:23T55JLT4:4:1467:37332:5946,LH00995:25:23T55JLT4:4:2258:42186:4769,LH00995:25:23T55JLT4:4:2286:25812:27413,LH00995:25:23T55JLT4:5:1184:15376:5526,LH00995:25:23T55JLT4:5:1285:39363:12966,LH00995:25:23T55JLT4:5:2166:16500:11677,LH00995:25:23T55JLT4:5:2173:24679:5386,LH00995:25:23T55JLT4:6:1108:11752:19847,LH00995:25:23T55JLT4:6:1159:42979:2808,LH00995:25:23T55JLT4:6:1235:42356:3830,LH00995:25:23T55JLT4:6:1291:32834:20547,LH00995:25:23T55JLT4:6:1309:50268:22131,LH00995:25:23T55JLT4:6:1309:50284:22131,LH00995:25:23T55JLT4:6:1427:13030:5106,LH00995:25:23T55JLT4:7:1212:9349:1617,LH00995:25:23T55JLT4:7:1261:20610:29165,LH00995:25:23T55JLT4:7:1270:13208:27189,LH00995:25:23T55JLT4:7:2403:11509:20911,LH00995:25:23T55JLT4:8:1133:46393:13989,LH00995:25:23T55JLT4:8:1196:32163:11257,LH00995:25:23T55JLT4:8:1196:32179:11257,LH00995:25:23T55JLT4:8:1334:29072:16161,LH00995:25:23T55JLT4:8:1402:7699:28520,LH00995:25:23T55JLT4:8:2197:11946:7432,LH00995:25:23T55JLT4:2:1163:20877:11551,LH00995:25:23T55JLT4:4:1318:28555:21710,LH00995:25:23T55JLT4:5:1489:28700:5484,LH00995:25:23T55JLT4:7:1415:5870:28548	out-of-frame	.	CDS/splice-site	intergenic	11	2	-/-	./-	.	13	ENST00000442448	.	duplication	0.00025435878462748	0.3333333333333333	0.1667938460589804																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	ERG--PCSEAT	ERG--PCSEAT	ERG--PCSEAT	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	ERG	PCSEAT	38445404	41611957	chr21:38445404-chr21:41611957	-,-	Arriba	1	0	12		12	PASS	out-of-frame	ERG--PCSEAT	ERG--PCSEAT	confidence:medium;duplicates(13),mismatches(2)	medium	duplication	CDS/splice-site	intergenic	27408	4	13.0	2.0	0.0	0.0									9	3	False	duplicates(13),mismatches(2)		FAIL		False	chr21:38445404	chr21:41611957	chr21:38445404-chr21:41611957	.	.	medium	27408	4	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(13),mismatches(2)	TCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCCAGGGTCACCATCAAAATGGAATGTAACCCTAGCCAGGTGAATGGCTCAAG|GACGCAGAGTGCCTCCAGATGTGATTGAAAAATTAAGGTGATATAAAACACAGTGCAATAAAACACACCGTCGTATACACTTAAGGCACAAGTGGAATCCTGAG	ERG	PCSEAT(29070),LINC00111(67224)	ENSG00000157554	.	SKMSPRVPQQDWLSQPPARVTIKMECNPSQVNGSr|tqsasrcd*	LH00995:25:23T55JLT4:1:1109:26386:2738,LH00995:25:23T55JLT4:1:1397:7326:19440,LH00995:25:23T55JLT4:1:2206:32219:4517,LH00995:25:23T55JLT4:2:1152:43796:20057,LH00995:25:23T55JLT4:2:2175:6178:13807,LH00995:25:23T55JLT4:2:2382:41887:14256,LH00995:25:23T55JLT4:2:2446:2133:17086,LH00995:25:23T55JLT4:3:1367:16638:18557,LH00995:25:23T55JLT4:4:1480:3702:1364,LH00995:25:23T55JLT4:4:2143:51320:20197,LH00995:25:23T55JLT4:4:2385:9753:17058,LH00995:25:23T55JLT4:4:2485:21443:10318,LH00995:25:23T55JLT4:5:1487:3322:6591,LH00995:25:23T55JLT4:5:2116:5611:10612,LH00995:25:23T55JLT4:5:2465:42995:12756,LH00995:25:23T55JLT4:6:2214:14146:27721,LH00995:25:23T55JLT4:6:2267:42534:5596,LH00995:25:23T55JLT4:7:1156:19227:12504,LH00995:25:23T55JLT4:7:2476:20270:6717,LH00995:25:23T55JLT4:7:2491:51118:9618,LH00995:25:23T55JLT4:8:1348:17318:14158,LH00995:25:23T55JLT4:8:1349:28854:22509,LH00995:25:23T55JLT4:8:2209:3095:25115,LH00995:25:23T55JLT4:1:1488:23070:5456,LH00995:25:23T55JLT4:5:2306:14761:22313,LH00995:25:23T55JLT4:6:1319:51061:4671,LH00995:25:23T55JLT4:7:1237:1963:5974	out-of-frame	.	CDS/splice-site	intergenic	9	3	-/-	./-	.	12	ENST00000442448	.	duplication	0.000328263486158223	0.42857142857142855	0.21444984602879338																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	ERG--PCSEAT	ERG--PCSEAT	ERG--PCSEAT	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr21	chr21	ERG	PCSEAT	38445404	41611957	chr21:38445404-chr21:41611957	-,-	Arriba	1	0	12		12	PASS	out-of-frame	ERG--PCSEAT	ERG--PCSEAT	confidence:medium;duplicates(13),mismatches(2)	medium	duplication	CDS/splice-site	intergenic	27408	4	13.0	2.0	0.0	0.0									9	3	False	duplicates(13),mismatches(2)		FAIL		False	chr21:38445404	chr21:41611957	chr21:38445404-chr21:41611957	.	.	medium	27408	4	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(13),mismatches(2)	TCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCCAGGGTCACCATCAAAATGGAATGTAACCCTAGCCAGGTGAATGGCTCAAG|GACGCAGAGTGCCTCCAGATGTGATTGAAAAATTAAGGTGATATAAAACACAGTGCAATAAAACACACCGTCGTATACACTTAAGGCACAAGTGGAATCCTGAG	ERG	PCSEAT(29070),LINC00111(67224)	ENSG00000157554	.	SKMSPRVPQQDWLSQPPARVTIKMECNPSQVNGSr|tqsasrcd*	LH00995:25:23T55JLT4:1:1109:26386:2738,LH00995:25:23T55JLT4:1:1397:7326:19440,LH00995:25:23T55JLT4:1:2206:32219:4517,LH00995:25:23T55JLT4:2:1152:43796:20057,LH00995:25:23T55JLT4:2:2175:6178:13807,LH00995:25:23T55JLT4:2:2382:41887:14256,LH00995:25:23T55JLT4:2:2446:2133:17086,LH00995:25:23T55JLT4:3:1367:16638:18557,LH00995:25:23T55JLT4:4:1480:3702:1364,LH00995:25:23T55JLT4:4:2143:51320:20197,LH00995:25:23T55JLT4:4:2385:9753:17058,LH00995:25:23T55JLT4:4:2485:21443:10318,LH00995:25:23T55JLT4:5:1487:3322:6591,LH00995:25:23T55JLT4:5:2116:5611:10612,LH00995:25:23T55JLT4:5:2465:42995:12756,LH00995:25:23T55JLT4:6:2214:14146:27721,LH00995:25:23T55JLT4:6:2267:42534:5596,LH00995:25:23T55JLT4:7:1156:19227:12504,LH00995:25:23T55JLT4:7:2476:20270:6717,LH00995:25:23T55JLT4:7:2491:51118:9618,LH00995:25:23T55JLT4:8:1348:17318:14158,LH00995:25:23T55JLT4:8:1349:28854:22509,LH00995:25:23T55JLT4:8:2209:3095:25115,LH00995:25:23T55JLT4:1:1488:23070:5456,LH00995:25:23T55JLT4:5:2306:14761:22313,LH00995:25:23T55JLT4:6:1319:51061:4671,LH00995:25:23T55JLT4:7:1237:1963:5974	out-of-frame	.	CDS/splice-site	intergenic	9	3	-/-	./-	.	12	ENST00000442448	.	duplication	0.000328263486158223	0.42857142857142855	0.21444984602879338																																						1173_QJL	Arriba
fp_audit	1173_QJL	fusion	ERG--PCSEAT	ERG--PCSEAT	ERG--PCSEAT	FP	FP		Arriba		dev_rna_exp0016	1173_QJL	altera_exact	1173	clinical	patient	prostate	Prostate				82	unknown			False	1173_QJL_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		37.50	38.00	58.23			AIH_Ext13_RNA	E01		False		dev_rna_exp0016_lib_s80	100.00		85.24	dev_rna_exp0016	H10		False		1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_QJL_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr21	chr21	ERG	PCSEAT	38445404	41611957	chr21:38445404-chr21:41611957	-,-	Arriba	1	0	13		13	PASS	out-of-frame	ERG--PCSEAT	ERG--PCSEAT	confidence:medium;duplicates(24),mismatches(3)	medium	duplication	CDS/splice-site	intergenic	43235	4	24.0	3.0	0.0	0.0									11	2	False	duplicates(24),mismatches(3)		FAIL		False	chr21:38445404	chr21:41611957	chr21:38445404-chr21:41611957	.	.	medium	43235	4	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(24),mismatches(3)	CGACTATGGACAGACTTCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCCAGGGTCACCATCAAAATGGAATGTAACCCTAGCCAGGTGAATGGCTCAAG|GACGCAGAGTGCCTCCAGATGTGATTGAAAAATTAAGGTGATATAAAACACAGTGCAATAAAACACACCGTCGTATACACTTAAGG	ERG	PCSEAT(29070),LINC00111(67224)	ENSG00000157554	.	DYGQTSKMSPRVPQQDWLSQPPARVTIKMECNPSQVNGSr|tqsasrcd*	LH00995:25:23T55JLT4:1:1335:48003:18179,LH00995:25:23T55JLT4:1:1344:14195:14214,LH00995:25:23T55JLT4:1:2254:28611:16988,LH00995:25:23T55JLT4:2:1272:29218:4839,LH00995:25:23T55JLT4:2:1311:1396:3508,LH00995:25:23T55JLT4:2:1343:5627:3578,LH00995:25:23T55JLT4:2:1476:32187:2667,LH00995:25:23T55JLT4:3:1130:5263:22537,LH00995:25:23T55JLT4:3:1135:24275:20547,LH00995:25:23T55JLT4:3:1209:45228:15138,LH00995:25:23T55JLT4:4:1369:15473:25423,LH00995:25:23T55JLT4:4:1447:22155:3648,LH00995:25:23T55JLT4:4:1467:37332:5946,LH00995:25:23T55JLT4:4:2258:42186:4769,LH00995:25:23T55JLT4:4:2286:25812:27413,LH00995:25:23T55JLT4:5:1184:15376:5526,LH00995:25:23T55JLT4:5:1285:39363:12966,LH00995:25:23T55JLT4:5:2166:16500:11677,LH00995:25:23T55JLT4:5:2173:24679:5386,LH00995:25:23T55JLT4:6:1108:11752:19847,LH00995:25:23T55JLT4:6:1159:42979:2808,LH00995:25:23T55JLT4:6:1235:42356:3830,LH00995:25:23T55JLT4:6:1291:32834:20547,LH00995:25:23T55JLT4:6:1309:50268:22131,LH00995:25:23T55JLT4:6:1309:50284:22131,LH00995:25:23T55JLT4:6:1427:13030:5106,LH00995:25:23T55JLT4:7:1212:9349:1617,LH00995:25:23T55JLT4:7:1261:20610:29165,LH00995:25:23T55JLT4:7:1270:13208:27189,LH00995:25:23T55JLT4:7:2403:11509:20911,LH00995:25:23T55JLT4:8:1133:46393:13989,LH00995:25:23T55JLT4:8:1196:32163:11257,LH00995:25:23T55JLT4:8:1196:32179:11257,LH00995:25:23T55JLT4:8:1334:29072:16161,LH00995:25:23T55JLT4:8:1402:7699:28520,LH00995:25:23T55JLT4:8:2197:11946:7432,LH00995:25:23T55JLT4:2:1163:20877:11551,LH00995:25:23T55JLT4:4:1318:28555:21710,LH00995:25:23T55JLT4:5:1489:28700:5484,LH00995:25:23T55JLT4:7:1415:5870:28548	out-of-frame	.	CDS/splice-site	intergenic	11	2	-/-	./-	.	13	ENST00000442448	.	duplication	0.00025435878462748	0.3333333333333333	0.1667938460589804																																						1173_QJL	Arriba
fp_audit	1173_RPC	fusion	AKT3--SDCCAG8	AKT3--SDCCAG8	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RPC	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				62	unknown			False	1173_RPC_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	35.00	54.89			AIH_Ext12_RNA	B02		False		dev_rna_exp0016_lib_s10	200.00		41.29	dev_rna_exp0016	B02		False		1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	AKT3	SDCCAG8	243843125	243372345	chr1:243843125-chr1:243372345	-,-	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(7)	low	deletion/5'-5'	CDS/splice-site	intron	7977	0	7.0	0.0	0.0	0.0									1	0	False	duplicates(7)		FAIL		False	chr1:243843125	chr1:243372345	chr1:243843125-chr1:243372345	.	.	low	7977	0	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(7)	GGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GGTGACTTGTTTGTGTAACAGAAGATGAGAATGGG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	MSDVTIVKEGWVQKR|g*	LH00995:25:23T55JLT4:1:2112:2513:28618,LH00995:25:23T55JLT4:1:2157:48561:25367,LH00995:25:23T55JLT4:2:1433:1364:14746,LH00995:25:23T55JLT4:2:2410:8273:21668,LH00995:25:23T55JLT4:4:1434:23070:5064,LH00995:25:23T55JLT4:5:2179:48424:4139,LH00995:25:23T55JLT4:6:2489:13887:9393,LH00995:25:23T55JLT4:8:1113:12108:20771	out-of-frame	PH_domain(9%)|	CDS/splice-site	intron	1	0	-/-	+/-	.	1	ENST00000336199	.	deletion/5'-5'	0.000125344697919278																																								1173_RPC	Arriba
fp_audit	1173_RPC	fusion	AKT3--SDCCAG8	AKT3--SDCCAG8	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RPC	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				62	unknown			False	1173_RPC_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	35.00	54.89			AIH_Ext12_RNA	B02		False		dev_rna_exp0016_lib_s10	200.00		41.29	dev_rna_exp0016	B02		False		1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243843125	243426427	chr1:243843125-chr1:243426427	-,+	STAR-Fusion	1	0	1	0.0364	1	FAIL	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6402	False	False	True	GT	AG	1		False	Read count too low: 1 < 8	TCGA_StarF2019;ChimerSeq																																								0	ENST00000680056.1	1-46	ENST00000435549.1	957-1245	0.0364	FAIL	atgagcgatgttaccattgtgaaagaaggttgggttcagaagagggATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAGGCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTGTCGGAAGAGGTGGACCGGCTGCGGACCCAGTTACCCAGCATGCCACAATCTGATTGCTGA	chr1|-|[0]243843125-243843170[0]<==>chr1|+|[2]243426427-243426558[1]|[2]243489014-243489140[2]|[0]243499756-243499785[2]	MSDVTIVKEGWVQKRDLK*LNSVKKKGIHMINWESYREEMKNWRNSVSSMGEYMRR*SKG*GSWISTARPQPSSWCSSSASRTSFSWRGRACRKRWTGCGPSYPACHNLIA	AKT3--SDCCAG8	1	LH00995:25:23T55JLT4:5:1351:25375:2724	YES_LDAS	GT	1.6402	chr1:243843125:-	AKT3^ENSG00000117020.19	PH-PARTIAL|16-46~|9.4e-08^Pkinase-PARTIAL|33-46~|0.99	.	FRAMESHIFT	AG	1.8892	chr1:243426427:+	SDCCAG8^ENSG00000054282.16	0	.	ONLY_REF_SPLICE		"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"		False	chr1:243843125-chr1:243426427	1.0	0.0	Read count too low: 1 < 8	1	1173_RPC	STAR-Fusion
fp_audit	1173_RPC	fusion	AKT3--SDCCAG8	AKT3--SDCCAG8	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RPC	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				62	unknown			False	1173_RPC_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	35.00	54.89			AIH_Ext12_RNA	B02		False		dev_rna_exp0016_lib_s10	200.00		41.29	dev_rna_exp0016	B02		False		1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243695591	243378721	chr1:243695591-chr1:243378721	-,+	STAR-Fusion	1	0	1	0.0364	1	FAIL	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"											ONLY_REF_SPLICE	NO_LDAS	1.4566	False	False	True	GT	AG	1		False	Read count too low: 1 < 8	TCGA_StarF2019;ChimerSeq																																								0	ENST00000263826.12	1-172	ENST00000366541.8	1474-2142	0.0364	FAIL	atgagcgatgttaccattgtgaaagaaggttgggttcagaagaggggagaatatataaaaaactggaggccaagatacttccttttgaagacagatggctcattcataggatataaagagaaacctcaagatgtggatttaccttatcccctcaacaacttttcagtggcaaGAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAACAACACTTGGAACAGGAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCACCAGACAGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAAGGAAGCAAAGGCCCAAGCCCTTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAGGCCCAGCATGACAAAACTGAAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAATCTCTCAAAAAACCAGATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAGGCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTGTCGGAAGAGGTGGACCGGCTGCGGACCCAGTTACCCAGCATGCCACAATCTGATTGCTGA	chr1|-|[0]243695591-243695716[1]|[0]243843125-243843170[0]<==>chr1|+|[0]243378721-243378863[1]|[2]243415702-243415829[0]|[1]243417968-243418076[1]|[2]243426427-243426558[1]|[2]243489014-243489140[2]|[0]243499756-243499785[2]	MSDVTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVARNREIENRTG*KQTTLGTGAAEGSPGQRGVPETNRTAGRI*APTAPHQTGKR*HSAEL*QGSKGPSPSGPAKRAGADTEDTANGGPA*QN*K*TVFVADLPEYIFDKVKGRMLYISQETGTNLSKNQI*NSSTQSRKKVYI**IGKVTEKK*RIGGTVCPAWEST*DDEAKAKAAG*AQPGHSPAAGAAPQQAEPASPGEAEPVGRGGPAADPVTQHATI*LL	AKT3--SDCCAG8	1	LH00995:25:23T55JLT4:7:2497:24307:4881	NO_LDAS	GT	1.9656	chr1:243695591:-	AKT3^ENSG00000117020.19	PH|7-105|7.6e-18^PH_11|8-103|0.00038^Pkinase|74-119|1.2^FTA2-PARTIAL|143-172~|0.00028^Pkinase-PARTIAL|150-172~|7.8e-81^PK_Tyr_Ser-Thr-PARTIAL|151-172~|7.1e-40^Kinase-like-PARTIAL|152-172~|0.24	.	FRAMESHIFT	AG	1.4566	chr1:243378721:+	SDCCAG8^ENSG00000054282.16	0	.	ONLY_REF_SPLICE		"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"		False	chr1:243695591-chr1:243378721	1.0	0.0	Read count too low: 1 < 8	1	1173_RPC	STAR-Fusion
fp_audit	1173_RPC	fusion	AKT3--SDCCAG8	AKT3--SDCCAG8	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RPC	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				62	unknown			False	1173_RPC_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	35.00	54.89			AIH_Ext12_RNA	B02		False		dev_rna_exp0016_lib_s10	200.00		41.29	dev_rna_exp0016	B02		False		1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	AKT3	SDCCAG8	243843125	243372345	chr1:243843125-chr1:243372345	-,-	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(7)	low	deletion/5'-5'	CDS/splice-site	intron	7977	0	7.0	0.0	0.0	0.0									1	0	False	duplicates(7)		FAIL		False	chr1:243843125	chr1:243372345	chr1:243843125-chr1:243372345	.	.	low	7977	0	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(7)	GGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GGTGACTTGTTTGTGTAACAGAAGATGAGAATGGG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	MSDVTIVKEGWVQKR|g*	LH00995:25:23T55JLT4:1:2112:2513:28618,LH00995:25:23T55JLT4:1:2157:48561:25367,LH00995:25:23T55JLT4:2:1433:1364:14746,LH00995:25:23T55JLT4:2:2410:8273:21668,LH00995:25:23T55JLT4:4:1434:23070:5064,LH00995:25:23T55JLT4:5:2179:48424:4139,LH00995:25:23T55JLT4:6:2489:13887:9393,LH00995:25:23T55JLT4:8:1113:12108:20771	out-of-frame	PH_domain(9%)|	CDS/splice-site	intron	1	0	-/-	+/-	.	1	ENST00000336199	.	deletion/5'-5'	0.000125344697919278																																								1173_RPC	Arriba
fp_audit	1173_RPC	fusion	AKT3--SDCCAG8	AKT3--SDCCAG8	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RPC	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				62	unknown			False	1173_RPC_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	35.00	54.89			AIH_Ext12_RNA	B02		False		dev_rna_exp0016_lib_s10	200.00		41.29	dev_rna_exp0016	B02		False		1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243843125	243426427	chr1:243843125-chr1:243426427	-,+	STAR-Fusion	1	0	1	0.0364	1	FAIL	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6402	False	False	True	GT	AG	1		False	Read count too low: 1 < 8	TCGA_StarF2019;ChimerSeq																																								0	ENST00000680056.1	1-46	ENST00000435549.1	957-1245	0.0364	FAIL	atgagcgatgttaccattgtgaaagaaggttgggttcagaagagggATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAGGCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTGTCGGAAGAGGTGGACCGGCTGCGGACCCAGTTACCCAGCATGCCACAATCTGATTGCTGA	chr1|-|[0]243843125-243843170[0]<==>chr1|+|[2]243426427-243426558[1]|[2]243489014-243489140[2]|[0]243499756-243499785[2]	MSDVTIVKEGWVQKRDLK*LNSVKKKGIHMINWESYREEMKNWRNSVSSMGEYMRR*SKG*GSWISTARPQPSSWCSSSASRTSFSWRGRACRKRWTGCGPSYPACHNLIA	AKT3--SDCCAG8	1	LH00995:25:23T55JLT4:5:1351:25375:2724	YES_LDAS	GT	1.6402	chr1:243843125:-	AKT3^ENSG00000117020.19	PH-PARTIAL|16-46~|9.4e-08^Pkinase-PARTIAL|33-46~|0.99	.	FRAMESHIFT	AG	1.8892	chr1:243426427:+	SDCCAG8^ENSG00000054282.16	0	.	ONLY_REF_SPLICE		"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"		False	chr1:243843125-chr1:243426427	1.0	0.0	Read count too low: 1 < 8	1	1173_RPC	STAR-Fusion
fp_audit	1173_RPC	fusion	AKT3--SDCCAG8	AKT3--SDCCAG8	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RPC	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				62	unknown			False	1173_RPC_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		71.30	35.00	54.89			AIH_Ext12_RNA	B02		False		dev_rna_exp0016_lib_s10	200.00		41.29	dev_rna_exp0016	B02		False		1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243695591	243378721	chr1:243695591-chr1:243378721	-,+	STAR-Fusion	1	0	1	0.0364	1	FAIL	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"											ONLY_REF_SPLICE	NO_LDAS	1.4566	False	False	True	GT	AG	1		False	Read count too low: 1 < 8	TCGA_StarF2019;ChimerSeq																																								0	ENST00000263826.12	1-172	ENST00000366541.8	1474-2142	0.0364	FAIL	atgagcgatgttaccattgtgaaagaaggttgggttcagaagaggggagaatatataaaaaactggaggccaagatacttccttttgaagacagatggctcattcataggatataaagagaaacctcaagatgtggatttaccttatcccctcaacaacttttcagtggcaaGAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAACAACACTTGGAACAGGAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCACCAGACAGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAAGGAAGCAAAGGCCCAAGCCCTTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAGGCCCAGCATGACAAAACTGAAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAATCTCTCAAAAAACCAGATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAGGCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTGTCGGAAGAGGTGGACCGGCTGCGGACCCAGTTACCCAGCATGCCACAATCTGATTGCTGA	chr1|-|[0]243695591-243695716[1]|[0]243843125-243843170[0]<==>chr1|+|[0]243378721-243378863[1]|[2]243415702-243415829[0]|[1]243417968-243418076[1]|[2]243426427-243426558[1]|[2]243489014-243489140[2]|[0]243499756-243499785[2]	MSDVTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVARNREIENRTG*KQTTLGTGAAEGSPGQRGVPETNRTAGRI*APTAPHQTGKR*HSAEL*QGSKGPSPSGPAKRAGADTEDTANGGPA*QN*K*TVFVADLPEYIFDKVKGRMLYISQETGTNLSKNQI*NSSTQSRKKVYI**IGKVTEKK*RIGGTVCPAWEST*DDEAKAKAAG*AQPGHSPAAGAAPQQAEPASPGEAEPVGRGGPAADPVTQHATI*LL	AKT3--SDCCAG8	1	LH00995:25:23T55JLT4:7:2497:24307:4881	NO_LDAS	GT	1.9656	chr1:243695591:-	AKT3^ENSG00000117020.19	PH|7-105|7.6e-18^PH_11|8-103|0.00038^Pkinase|74-119|1.2^FTA2-PARTIAL|143-172~|0.00028^Pkinase-PARTIAL|150-172~|7.8e-81^PK_Tyr_Ser-Thr-PARTIAL|151-172~|7.1e-40^Kinase-like-PARTIAL|152-172~|0.24	.	FRAMESHIFT	AG	1.4566	chr1:243378721:+	SDCCAG8^ENSG00000054282.16	0	.	ONLY_REF_SPLICE		"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:-:+:[11858]""]"		False	chr1:243695591-chr1:243378721	1.0	0.0	Read count too low: 1 < 8	1	1173_RPC	STAR-Fusion
fp_audit	1173_RQT	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RQT	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				84	unknown			False	1173_RQT_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.20	35.00	22.07			AIH_Ext12_RNA	G02		False		dev_rna_exp0016_lib_s15	200.00		28.48	dev_rna_exp0016	G02		False		1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	4		4	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:high;duplicates(18)	high	inversion	CDS/splice-site	5'UTR/splice-site	551	1154	18.0	0.0	0.0	0.0									2	2	False	duplicates(18)		FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	high	551	1154	downstream	downstream	0	total_reads_below_min(4.0<8.0)	duplicates(18)	GAGTGCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:2:1139:6590:19875,LH00995:25:23T55JLT4:3:1153:22536:8342,LH00995:25:23T55JLT4:3:1274:48828:17955,LH00995:25:23T55JLT4:3:1346:32907:26811,LH00995:25:23T55JLT4:4:1343:3637:9716,LH00995:25:23T55JLT4:6:2296:40253:16778,LH00995:25:23T55JLT4:1:1165:42615:21318,LH00995:25:23T55JLT4:2:1197:51166:21836,LH00995:25:23T55JLT4:2:2213:12391:9239,LH00995:25:23T55JLT4:3:2222:14656:17927,LH00995:25:23T55JLT4:3:2424:17156:14802,LH00995:25:23T55JLT4:4:2414:14672:23223,LH00995:25:23T55JLT4:5:1138:50551:9057,LH00995:25:23T55JLT4:5:1221:24364:20309,LH00995:25:23T55JLT4:5:1438:7213:20841,LH00995:25:23T55JLT4:8:1177:21848:14410,LH00995:25:23T55JLT4:8:1177:21856:14396,LH00995:25:23T55JLT4:8:1177:21856:14424,LH00995:25:23T55JLT4:8:1421:32915:28058,LH00995:25:23T55JLT4:8:1421:32923:28072,LH00995:25:23T55JLT4:8:2112:41863:10430,LH00995:25:23T55JLT4:8:2319:46547:17422	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	2	2	+/+	-/-	.	4	ENST00000366541	ENST00000673466	inversion	0.003616636528028933	0.0017301038062283738	0.0026733701671286534																																						1173_RQT	Arriba
fp_audit	1173_RQT	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RQT	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				84	unknown			False	1173_RQT_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.20	35.00	22.07			AIH_Ext12_RNA	G02		False		dev_rna_exp0016_lib_s15	200.00		28.48	dev_rna_exp0016	G02		False		1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RQT_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243378863	243664883	chr1:243378863-chr1:243664883	+,-	STAR-Fusion	1	0	1	0.0052	1	FAIL	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	"[""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:+:-:[11858]""]"											ONLY_REF_SPLICE	NO_LDAS	1.7968	False	False	True	GT	AG	1		False	Read count too low: 1 < 8																																									0	ENST00000366541.8	1-1616	ENST00000680056.1	47-1314	0.0052	FAIL	atggcgaagtccccggagaactctaccctggaggagattctggggcagtatcaacggagtctccgggaacatgccagcagaagcattcaccaactgacatgtgccctgaaagaaggcgatgtcactattggagaagatgcaccaaatctttcttttagcaccagtgtgggaaatgaggacgccaggacagcctggcccgaattacaacagagccatgctgttaatcagctcaaagatttgttgcgccaacaagcagataaggaaagtgaagtatctccgtcaagaagaagaaaaatgtcccccttgaggtcattagaacatgaggaaaccaatatgcctactatgcacgaccttgttcatactattaatgaccagtctcaatatattcatcatttagaggcagaagttaagttctgcaaggaggaactctctggaatgaaaaataaaatacaagtagttgtgcttgaaaacgaagggctccagcaacagctaaaatctcaaagacaagaggagacactgagggaacaaacacttctggatgcatccggaaacatgcacaattcttggattacaacaggtgaagattctggggtgggcgaaacctccaaaagaccattttcccatgacaatgcagattttggcaaagctgcatctgctggtgagcagctagaactggagaagctaaaacttacttatgaggaaaagtgtgaaattgaggaatcccaattgaagtttttgaggaacgacttagctgaatatcagagaacttgtgaagatcttaaagagcaactaaagcataaagaatttcttctggctgctaatacttgtaaccgtgttggtggtctttgtttgaaatgtgctcagcatgaagctgttctttcccaaacccatactaatgttcatatgcagaccatcgaaagactggttaaagaaagagatgacttgatgtctgcactagtttccgtaaggagcagcttggcagatacgcagcaaagagaagcaagtgcttatgaacaggtgaaacaagttttgcaaatatctgaggaagccaattttgaaaaaaccaaggctttaatccagtgtgaccagttgaggaaggagctggagaggcaggcggagcgacttgaaaaagaacttgcatctcagcaagagaaaagggccattgagaaagacatgatgaaaaaggaaataacgaaagaaagggagtacatgggatcaaagatgttgatcttgtctcagaatattgcccaactggaggcccaggtggaaaaggttacaaaggaaaagatttcagctattaatcaactggaggaaattcaaagccagctggcttctcgggaaatggatgtcacaaaggtgtgtggagaaatgcgctatcagctgaataaaaccaacatggagaaggatgaggcagaaaaggagcacagagagttcagagcaaaaactaacagggatcttgaaattaaagatcaggaaatagagaaattgagaatagaactggatgaaagcaaacaacacttggaacaggagcagcagaaggcagccctggccagagaggagtgcctgagactaacagaactgctgggcgaatctgagcaccaactgcacctcaccagAATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAGGGAAGAATGGACAGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAGGAGAGAATGAATTGTAGTCCAACTTCACAAATTGATAATATAGGAGAGGAAGAGATGGATGCCTCTACAACCCATCATAAAAGAAAGACAATGAATGATTTTGACTATTTGAAACTACTAGGTAAAGGCACTTTTGGGAAAGTTATTTTGGTTCGAGAGAAGGCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAGGATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACATCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAGCTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCGTGATCTCAAGTTGGAGAATCTAATGCTGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTTTGCAAAGAAGGGATCACAGATGCAGCCACCATGAAGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAGGTGTTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGGGTTGTCATGTATGAAATGATGTGTGGGAGGTTACCTTTCTACAACCAGGACCATGAGAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACGCCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAGCTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAGCTCAGACTATTACAATAACACCACCTGAAAAATATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGGCCGCATTTCCCTCAATTTTCCTACTCTGCAAGTGGACGAGAATAA	chr1|+|[0]243256174-243256240[0]|[1]243270105-243270257[0]|[1]243270978-243271063[2]|[0]243274543-243274656[2]|[0]243286272-243286397[2]|[0]243293091-243293219[2]|[0]243304713-243304777[1]|[2]243307989-243308177[1]|[2]243316755-243316893[2]|[0]243330540-243330692[2]|[0]243341039-243341173[2]|[0]243344215-243344331[2]|[0]243378721-243378863[1]<==>chr1|-|[2]243505249-243505334[1]|[0]243512324-243512426[0]|[2]243545510-243545597[2]|[1]243552729-243552943[0]|[2]243563720-243563848[0]|[2]243572926-243573048[0]|[2]243613671-243613739[0]|[2]243615096-243615161[0]|[2]243637611-243637742[0]|[2]243645893-243646037[2]|[1]243664772-243664883[1]	MAKSPENSTLEEILGQYQRSLREHASRSIHQLTCALKEGDVTIGEDAPNLSFSTSVGNEDARTAWPELQQSHAVNQLKDLLRQQADKESEVSPSRRRKMSPLRSLEHEETNMPTMHDLVHTINDQSQYIHHLEAEVKFCKEELSGMKNKIQVVVLENEGLQQQLKSQRQEETLREQTLLDASGNMHNSWITTGEDSGVGETSKRPFSHDNADFGKAASAGEQLELEKLKLTYEEKCEIEESQLKFLRNDLAEYQRTCEDLKEQLKHKEFLLAANTCNRVGGLCLKCAQHEAVLSQTHTNVHMQTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRMPVNENRTTKAKHIYNQMSPVDYCYRENISCRYSRGKGRMDRSYPGCSRQTAEARRGENEL*SNFTN**YRRGRDGCLYNPS*KKDNE*F*LFETTR*RHFWESYFGSREGKWKILCYEDSEERSHYCKG*SGTHSN*KQSIKEH*TSLFNILEIFLPDKRPFVFCDGIC*WGRAVFPFVERAGVL*GPHTFLWCRNCLCLGLSTFRKDCVP*SQVGESNAGQRWPHKNYRFWTLQRRDHRCSHHEDILWHSRISGTRGVRR**LWPSSRLVGPRGCHV*NDVWEVTFLQPGP*ETF*ININGRH*ISSNTLFRCKIIAFRALDKGSK*TPWWRTR*CKRNYETQFLLWSKLARCI**KACTSF*TSSNI*DRY*IF**RIYSSDYYNNTT*KI**GWYGLHGQ*EAAAFPSIFLLCKWTRI	SDCCAG8--AKT3	1	LH00995:25:23T55JLT4:1:2388:10069:24387	NO_LDAS	GT	1.7968	chr1:243378863:+	SDCCAG8^ENSG00000054282.16	CCCAP|6-705|0^MTES_1575|155-187|0.15^MTES_1575|346-372|0.22^Aegerolysin|458-512|1.9e-05^MTES_1575|481-523|0.00037^Aegerolysin|561-581|1.5	Pkinase-PARTIAL|~47-77|0.99^PH-PARTIAL|~47-63|9.4e-08^FTA2|101-140|0.00021^Pkinase|108-363|5.2e-81^PK_Tyr_Ser-Thr|109-346|4.8e-40^Kinase-like|110-136|0.19^PH|172-193|1.8^FTA2|211-236|0.0037^Kinase-like|213-343|6.4e-11^Pkinase_C|384-431|1.6e-11	FRAMESHIFT	AG	1.8892	chr1:243664883:-	AKT3^ENSG00000117020.19	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:+:-:[11858]""]"		False	chr1:243378863-chr1:243664883	1.0	0.0	Read count too low: 1 < 8	1	1173_RQT	STAR-Fusion
fp_audit	1173_RQT	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RQT	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				84	unknown			False	1173_RQT_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.20	35.00	22.07			AIH_Ext12_RNA	G02		False		dev_rna_exp0016_lib_s15	200.00		28.48	dev_rna_exp0016	G02		False		1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	4		4	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:high;duplicates(18)	high	inversion	CDS/splice-site	5'UTR/splice-site	551	1154	18.0	0.0	0.0	0.0									2	2	False	duplicates(18)		FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	high	551	1154	downstream	downstream	0	total_reads_below_min(4.0<8.0)	duplicates(18)	GAGTGCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|g*	LH00995:25:23T55JLT4:2:1139:6590:19875,LH00995:25:23T55JLT4:3:1153:22536:8342,LH00995:25:23T55JLT4:3:1274:48828:17955,LH00995:25:23T55JLT4:3:1346:32907:26811,LH00995:25:23T55JLT4:4:1343:3637:9716,LH00995:25:23T55JLT4:6:2296:40253:16778,LH00995:25:23T55JLT4:1:1165:42615:21318,LH00995:25:23T55JLT4:2:1197:51166:21836,LH00995:25:23T55JLT4:2:2213:12391:9239,LH00995:25:23T55JLT4:3:2222:14656:17927,LH00995:25:23T55JLT4:3:2424:17156:14802,LH00995:25:23T55JLT4:4:2414:14672:23223,LH00995:25:23T55JLT4:5:1138:50551:9057,LH00995:25:23T55JLT4:5:1221:24364:20309,LH00995:25:23T55JLT4:5:1438:7213:20841,LH00995:25:23T55JLT4:8:1177:21848:14410,LH00995:25:23T55JLT4:8:1177:21856:14396,LH00995:25:23T55JLT4:8:1177:21856:14424,LH00995:25:23T55JLT4:8:1421:32915:28058,LH00995:25:23T55JLT4:8:1421:32923:28072,LH00995:25:23T55JLT4:8:2112:41863:10430,LH00995:25:23T55JLT4:8:2319:46547:17422	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	2	2	+/+	-/-	.	4	ENST00000366541	ENST00000673466	inversion	0.003616636528028933	0.0017301038062283738	0.0026733701671286534																																						1173_RQT	Arriba
fp_audit	1173_RQT	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_RQT	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				84	unknown			False	1173_RQT_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		47.20	35.00	22.07			AIH_Ext12_RNA	G02		False		dev_rna_exp0016_lib_s15	200.00		28.48	dev_rna_exp0016	G02		False		1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_RQT_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr1	chr1	SDCCAG8	AKT3	243378863	243664883	chr1:243378863-chr1:243664883	+,-	STAR-Fusion	1	0	1	0.0052	1	FAIL	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	"[""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:+:-:[11858]""]"											ONLY_REF_SPLICE	NO_LDAS	1.7968	False	False	True	GT	AG	1		False	Read count too low: 1 < 8																																									0	ENST00000366541.8	1-1616	ENST00000680056.1	47-1314	0.0052	FAIL	atggcgaagtccccggagaactctaccctggaggagattctggggcagtatcaacggagtctccgggaacatgccagcagaagcattcaccaactgacatgtgccctgaaagaaggcgatgtcactattggagaagatgcaccaaatctttcttttagcaccagtgtgggaaatgaggacgccaggacagcctggcccgaattacaacagagccatgctgttaatcagctcaaagatttgttgcgccaacaagcagataaggaaagtgaagtatctccgtcaagaagaagaaaaatgtcccccttgaggtcattagaacatgaggaaaccaatatgcctactatgcacgaccttgttcatactattaatgaccagtctcaatatattcatcatttagaggcagaagttaagttctgcaaggaggaactctctggaatgaaaaataaaatacaagtagttgtgcttgaaaacgaagggctccagcaacagctaaaatctcaaagacaagaggagacactgagggaacaaacacttctggatgcatccggaaacatgcacaattcttggattacaacaggtgaagattctggggtgggcgaaacctccaaaagaccattttcccatgacaatgcagattttggcaaagctgcatctgctggtgagcagctagaactggagaagctaaaacttacttatgaggaaaagtgtgaaattgaggaatcccaattgaagtttttgaggaacgacttagctgaatatcagagaacttgtgaagatcttaaagagcaactaaagcataaagaatttcttctggctgctaatacttgtaaccgtgttggtggtctttgtttgaaatgtgctcagcatgaagctgttctttcccaaacccatactaatgttcatatgcagaccatcgaaagactggttaaagaaagagatgacttgatgtctgcactagtttccgtaaggagcagcttggcagatacgcagcaaagagaagcaagtgcttatgaacaggtgaaacaagttttgcaaatatctgaggaagccaattttgaaaaaaccaaggctttaatccagtgtgaccagttgaggaaggagctggagaggcaggcggagcgacttgaaaaagaacttgcatctcagcaagagaaaagggccattgagaaagacatgatgaaaaaggaaataacgaaagaaagggagtacatgggatcaaagatgttgatcttgtctcagaatattgcccaactggaggcccaggtggaaaaggttacaaaggaaaagatttcagctattaatcaactggaggaaattcaaagccagctggcttctcgggaaatggatgtcacaaaggtgtgtggagaaatgcgctatcagctgaataaaaccaacatggagaaggatgaggcagaaaaggagcacagagagttcagagcaaaaactaacagggatcttgaaattaaagatcaggaaatagagaaattgagaatagaactggatgaaagcaaacaacacttggaacaggagcagcagaaggcagccctggccagagaggagtgcctgagactaacagaactgctgggcgaatctgagcaccaactgcacctcaccagAATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAGGGAAGAATGGACAGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAGGAGAGAATGAATTGTAGTCCAACTTCACAAATTGATAATATAGGAGAGGAAGAGATGGATGCCTCTACAACCCATCATAAAAGAAAGACAATGAATGATTTTGACTATTTGAAACTACTAGGTAAAGGCACTTTTGGGAAAGTTATTTTGGTTCGAGAGAAGGCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAGGATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACATCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAGCTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCGTGATCTCAAGTTGGAGAATCTAATGCTGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTTTGCAAAGAAGGGATCACAGATGCAGCCACCATGAAGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAGGTGTTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGGGTTGTCATGTATGAAATGATGTGTGGGAGGTTACCTTTCTACAACCAGGACCATGAGAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACGCCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAGCTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAGCTCAGACTATTACAATAACACCACCTGAAAAATATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGGCCGCATTTCCCTCAATTTTCCTACTCTGCAAGTGGACGAGAATAA	chr1|+|[0]243256174-243256240[0]|[1]243270105-243270257[0]|[1]243270978-243271063[2]|[0]243274543-243274656[2]|[0]243286272-243286397[2]|[0]243293091-243293219[2]|[0]243304713-243304777[1]|[2]243307989-243308177[1]|[2]243316755-243316893[2]|[0]243330540-243330692[2]|[0]243341039-243341173[2]|[0]243344215-243344331[2]|[0]243378721-243378863[1]<==>chr1|-|[2]243505249-243505334[1]|[0]243512324-243512426[0]|[2]243545510-243545597[2]|[1]243552729-243552943[0]|[2]243563720-243563848[0]|[2]243572926-243573048[0]|[2]243613671-243613739[0]|[2]243615096-243615161[0]|[2]243637611-243637742[0]|[2]243645893-243646037[2]|[1]243664772-243664883[1]	MAKSPENSTLEEILGQYQRSLREHASRSIHQLTCALKEGDVTIGEDAPNLSFSTSVGNEDARTAWPELQQSHAVNQLKDLLRQQADKESEVSPSRRRKMSPLRSLEHEETNMPTMHDLVHTINDQSQYIHHLEAEVKFCKEELSGMKNKIQVVVLENEGLQQQLKSQRQEETLREQTLLDASGNMHNSWITTGEDSGVGETSKRPFSHDNADFGKAASAGEQLELEKLKLTYEEKCEIEESQLKFLRNDLAEYQRTCEDLKEQLKHKEFLLAANTCNRVGGLCLKCAQHEAVLSQTHTNVHMQTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRMPVNENRTTKAKHIYNQMSPVDYCYRENISCRYSRGKGRMDRSYPGCSRQTAEARRGENEL*SNFTN**YRRGRDGCLYNPS*KKDNE*F*LFETTR*RHFWESYFGSREGKWKILCYEDSEERSHYCKG*SGTHSN*KQSIKEH*TSLFNILEIFLPDKRPFVFCDGIC*WGRAVFPFVERAGVL*GPHTFLWCRNCLCLGLSTFRKDCVP*SQVGESNAGQRWPHKNYRFWTLQRRDHRCSHHEDILWHSRISGTRGVRR**LWPSSRLVGPRGCHV*NDVWEVTFLQPGP*ETF*ININGRH*ISSNTLFRCKIIAFRALDKGSK*TPWWRTR*CKRNYETQFLLWSKLARCI**KACTSF*TSSNI*DRY*IF**RIYSSDYYNNTT*KI**GWYGLHGQ*EAAAFPSIFLLCKWTRI	SDCCAG8--AKT3	1	LH00995:25:23T55JLT4:1:2388:10069:24387	NO_LDAS	GT	1.7968	chr1:243378863:+	SDCCAG8^ENSG00000054282.16	CCCAP|6-705|0^MTES_1575|155-187|0.15^MTES_1575|346-372|0.22^Aegerolysin|458-512|1.9e-05^MTES_1575|481-523|0.00037^Aegerolysin|561-581|1.5	Pkinase-PARTIAL|~47-77|0.99^PH-PARTIAL|~47-63|9.4e-08^FTA2|101-140|0.00021^Pkinase|108-363|5.2e-81^PK_Tyr_Ser-Thr|109-346|4.8e-40^Kinase-like|110-136|0.19^PH|172-193|1.8^FTA2|211-236|0.0037^Kinase-like|213-343|6.4e-11^Pkinase_C|384-431|1.6e-11	FRAMESHIFT	AG	1.8892	chr1:243664883:-	AKT3^ENSG00000117020.19	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr1:0.01Mb]"",""NEIGHBORS_OVERLAP:+:-:[11858]""]"		False	chr1:243378863-chr1:243664883	1.0	0.0	Read count too low: 1 < 8	1	1173_RQT	STAR-Fusion
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	348		348	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(165)	high	translocation	3'UTR/splice-site	intergenic	19112	314	165.0	0.0	0.0	0.0									155	193		duplicates(165)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	19112	314	downstream	downstream	0		duplicates(165)	CGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCAT	AC091167.2	MYC(4688),PVT1(46887)	ENSG00000261147	.	.	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LT4:3:1362:3670:14788,LH00995:25:23T55JLT4:3:1405:51134:5694,LH00995:25:23T55JLT4:3:1418:21452:19272,LH00995:25:23T55JLT4:3:1483:41588:1546,LH00995:25:23T55JLT4:3:2118:4438:2780,LH00995:25:23T55JLT4:3:2177:38958:20757,LH00995:25:23T55JLT4:3:2203:44233:26418,LH00995:25:23T55JLT4:3:2205:51684:12784,LH00995:25:23T55JLT4:3:2251:48375:25045,LH00995:25:23T55JLT4:3:2296:28935:19706,LH00995:25:23T55JLT4:3:2320:13742:7376,LH00995:25:23T55JLT4:3:2337:43303:6227,LH00995:25:23T55JLT4:3:2360:51999:24485,LH00995:25:23T55JLT4:3:2365:5037:9253,LH00995:25:23T55JLT4:3:2367:2084:22579,LH00995:25:23T55JLT4:3:2373:45139:23308,LH00995:25:23T55JLT4:3:2403:12229:9071,LH00995:25:23T55JLT4:3:2457:31613:3242,LH00995:25:23T55JLT4:3:2483:37486:1476,LH00995:25:23T55JLT4:4:1175:32049:28296,LH00995:25:23T55JLT4:4:1242:31791:9660,LH00995:25:23T55JLT4:4:1245:30779:9309,LH00995:25:23T55JLT4:4:1248:15368:1224,LH00995:25:23T55JLT4:4:1273:49224:22088,LH00995:25:23T55JLT4:4:1273:49241:22088,LH00995:25:23T55JLT4:4:1295:21500:6801,LH00995:25:23T55JLT4:4:1310:45268:13919,LH00995:25:23T55JLT4:4:1314:49152:6773,LH00995:25:23T55JLT4:4:1316:12577:4881,LH00995:25:23T55JLT4:4:1326:19567:29123,LH00995:25:23T55JLT4:4:1327:1882:19903,LH00995:25:23T55JLT4:4:1370:38319:7992,LH00995:25:23T55JLT4:4:1374:40698:5610,LH00995:25:23T55JLT4:4:1379:43861:28520,LH00995:25:23T55JLT4:4:1408:47242:24232,LH00995:25:23T55JLT4:4:1408:47251:24218,LH00995:25:23T55JLT4:5:1105:16444:26488,LH00995:25:23T55JLT4:5:1109:1218:23153,LH00995:25:23T55JLT4:5:1122:4236:19861,LH00995:25:23T55JLT4:5:1168:24599:9646,LH00995:25:23T55JLT4:5:1173:1502:18319,LH00995:25:23T55JLT4:5:1226:13232:4139,LH00995:25:23T55JLT4:5:1226:30448:15433,LH00995:25:23T55JLT4:5:1288:38368:26797,LH00995:25:23T55JLT4:5:1293:1623:21108,LH00995:25:23T55JLT4:5:1310:12197:27091,LH00995:25:23T55JLT4:5:1312:45867:18740,LH00995:25:23T55JLT4:5:1329:33352:5834,LH00995:25:23T55JLT4:5:1384:43028:25479,LH00995:25:23T55JLT4:5:1406:33619:17114,LH00995:25:23T55JLT4:5:1417:13637:22299,LH00995:25:23T55JLT4:5:1430:30019:12000,LH00995:25:23T55JLT4:5:1461:34646:7740,LH00995:25:23T55JLT4:5:1476:27794:13947,LH00995:25:23T55JLT4:5:1481:22301:11579,LH00995:25:23T55JLT4:5:2136:30609:21010,LH00995:25:23T55JLT4:5:2164:41385:2093,LH00995:25:23T55JLT4:5:2181:20012:27595,LH00995:25:23T55JLT4:5:2182:34153:12294,LH00995:25:23T55JLT4:5:2249:29663:17380,LH00995:25:23T55JLT4:5:2282:6938:22271,LH00995:25:23T55JLT4:5:2283:31904:1757,LH00995:25:23T55JLT4:5:2315:51967:11621,LH00995:25:23T55JLT4:5:2357:7156:4433,LH00995:25:23T55JLT4:5:2373:13070:14003,LH00995:25:23T55JLT4:5:2373:13086:14003,LH00995:25:23T55JLT4:5:2386:15724:22663,LH00995:25:23T55JLT4:5:2430:48238:1238,LH00995:25:23T55JLT4:5:2463:17528:6591,LH00995:25:23T55JLT4:5:2469:48100:25185,LH00995:25:23T55JLT4:5:2482:11994:10486,LH00995:25:23T55JLT4:5:2490:28603:6409,LH00995:25:23T55JLT4:6:1115:45228:19174,LH00995:25:23T55JLT4:6:1115:45236:19160,LH00995:25:23T55JLT4:6:1203:26265:10038,LH00995:25:23T55JLT4:6:1205:35334:1084,LH00995:25:23T55JLT4:6:1354:25723:26082,LH00995:25:23T55JLT4:6:1370:47477:27161,LH00995:25:23T55JLT4:6:1385:29453:25760,LH00995:25:23T55JLT4:6:1390:41863:16287,LH00995:25:23T55JLT4:6:1392:20877:25423,LH00995:25:23T55JLT4:6:1454:4309:28030,LH00995:25:23T55JLT4:6:1478:23555:1869,LH00995:25:23T55JLT4:6:1482:49710:6227,LH00995:25:23T55JLT4:6:1495:32923:27287,LH00995:25:23T55JLT4:6:2158:14397:13779,LH00995:25:23T55JLT4:6:2190:21759:23812,LH00995:25:23T55JLT4:6:2221:14324:13821,LH00995:25:23T55JLT4:6:2257:34404:18894,LH00995:25:23T55JLT4:6:2260:13531:24302,LH00995:25:23T55JLT4:6:2277:23223:21192,LH00995:25:23T55JLT4:6:2294:38327:19636,LH00995:25:23T55JLT4:6:2333:44031:26572,LH00995:25:23T55JLT4:6:2340:15748:23125,LH00995:25:23T55JLT4:6:2341:30561:23055,LH00995:25:23T55JLT4:6:2356:49912:12574,LH00995:25:23T55JLT4:6:2457:25594:22467,LH00995:25:23T55JLT4:6:2482:22819:10430,LH00995:25:23T55JLT4:8:1103:41596:12826,LH00995:25:23T55JLT4:8:1121:37583:8875,LH00995:25:23T55JLT4:8:1131:40156:7109,LH00995:25:23T55JLT4:8:1135:38165:8539,LH00995:25:23T55JLT4:8:1138:3289:6591,LH00995:25:23T55JLT4:8:1155:37955:1252,LH00995:25:23T55JLT4:8:1246:45673:8539,LH00995:25:23T55JLT4:8:1274:10643:21150,LH00995:25:23T55JLT4:8:1285:26540:8721,LH00995:25:23T55JLT4:8:1316:10643:5512,LH00995:25:23T55JLT4:8:1332:11663:4055,LH00995:25:23T55JLT4:8:1411:32163:4139,LH00995:25:23T55JLT4:8:1411:32179:4139,LH00995:25:23T55JLT4:8:1411:36539:22060,LH00995:25:23T55JLT4:8:1431:41450:8342,LH00995:25:23T55JLT4:8:1436:29250:26474,LH00995:25:23T55JLT4:8:1465:24866:13191,LH00995:25:23T55JLT4:8:1469:16104:7123,LH00995:25:23T55JLT4:8:1475:25343:17408,LH00995:25:23T55JLT4:8:1495:15635:9365,LH00995:25:23T55JLT4:8:2139:27835:1070,LH00995:25:23T55JLT4:8:2147:21136:20043,LH00995:25:23T55JLT4:8:2184:1938:23812,LH00995:25:23T55JLT4:8:2201:51829:27581,LH00995:25:23T55JLT4:8:2204:22900:11719,LH00995:25:23T55JLT4:8:2214:18507:26250,LH00995:25:23T55JLT4:8:2308:15902:12602,LH00995:25:23T55JLT4:8:2313:38716:27567,LH00995:25:23T55JLT4:8:2340:28886:21864,LH00995:25:23T55JLT4:8:2347:17892:16554,LH00995:25:23T55JLT4:8:2354:15813:18950,LH00995:25:23T55JLT4:8:2354:7877:23167,LH00995:25:23T55JLT4:8:2354:7885:23181,LH00995:25:23T55JLT4:8:2356:5320:6829,LH00995:25:23T55JLT4:8:2409:3257:20491,LH00995:25:23T55JLT4:8:2474:24032:4013	.	.	3'UTR/splice-site	intergenic	155	193	+/+	./-	.	348	ENST00000561573	.	translocation	0.008044843514818083	0.3806706114398422	0.19435772747733016																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	245		245	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(140)	high	translocation	CDS/splice-site	intergenic	19112	314	140.0	0.0	0.0	0.0									61	184		duplicates(140)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	19112	314	downstream	downstream	0		duplicates(140)	TCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCAT	AC091167.6	MYC(4688),PVT1(46887)	ENSG00000275674	.	.	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3T55JLT4:8:2184:1938:23812,LH00995:25:23T55JLT4:8:2201:51829:27581,LH00995:25:23T55JLT4:8:2214:18507:26250,LH00995:25:23T55JLT4:8:2313:38716:27567,LH00995:25:23T55JLT4:8:2354:15813:18950,LH00995:25:23T55JLT4:8:2409:3257:20491	.	.	CDS/splice-site	intergenic	61	184	+/+	./-	.	245	ENST00000622269	.	translocation	0.0031815573984248684	0.36947791164658633	0.1863297345225056																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	252		252	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(101),mismatches(1)	high	translocation	3'UTR/splice-site	intergenic	18064	210	101.0	1.0	0.0	0.0									109	143		duplicates(101),mismatches(1)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	18064	210	downstream	downstream	0		duplicates(101),mismatches(1)	ACGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATTC	AC091167.2	MYC(4688),PVT1(46887)	ENSG00000261147	.	.	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56,LH00995:25:23T55JLT4:3:1225:50422:15923,LH00995:25:23T55JLT4:3:1255:13386:4881,LH00995:25:23T55JLT4:3:1256:49750:2569,LH00995:25:23T55JLT4:3:1256:49758:2583,LH00995:25:23T55JLT4:3:2113:25416:22915,LH00995:25:23T55JLT4:3:2130:17860:3298,LH00995:25:23T55JLT4:3:2237:12795:27175,LH00995:25:23T55JLT4:3:2255:32413:19762,LH00995:25:23T55JLT4:3:2265:42615:18067,LH00995:25:23T55JLT4:3:2345:7254:18922,LH00995:25:23T55JLT4:3:2379:33465:5246,LH00995:25:23T55JLT4:3:2436:46126:15068,LH00995:25:23T55JLT4:3:2463:4649:24443,LH00995:25:23T55JLT4:3:2473:49451:20519,LH00995:25:23T55JLT4:4:1138:41329:23966,LH00995:25:23T55JLT4:4:1374:34727:8917,LH00995:25:23T55JLT4:4:1413:14818:21934,LH00995:25:23T55JLT4:4:1474:30755:28744,LH00995:25:23T55JLT4:4:1474:30763:28758,LH00995:25:23T55JLT4:4:1482:27034:13667,LH00995:25:23T55JLT4:4:1482:27042:13681,LH00995:25:23T55JLT4:4:2165:40042:12210,LH00995:25:23T55JLT4:4:2167:20812:9225,LH00995:25:23T55JLT4:4:2193:16492:23181,LH00995:25:23T55JLT4:4:2277:21524:29375,LH00995:25:23T55JLT4:4:2288:50608:15405,LH00995:25:23T55JLT4:4:2319:27980:23546,LH00995:25:23T55JLT4:4:2367:20594:13219,LH00995:25:23T55JLT4:4:2394:13127:4433,LH00995:25:23T55JLT4:4:2420:37138:22397,LH00995:25:23T55JLT4:4:2437:7965:21696,LH00995:25:23T55JLT4:4:2443:48674:23994,LH00995:25:23T55JLT4:5:1187:31321:22439,LH00995:25:23T55JLT4:5:1225:28296:7278,LH00995:25:23T55JLT4:5:1350:22600:4391,LH00995:25:23T55JLT4:5:1449:13281:3830,LH00995:25:23T55JLT4:5:1496:28854:5274,LH00995:25:23T55JLT4:5:2147:45301:24961,LH00995:25:23T55JLT4:5:2150:37696:19132,LH00995:25:23T55JLT4:5:2181:43044:5470,LH00995:25:23T55JLT4:5:2234:3888:12280,LH00995:25:23T55JLT4:5:2275:23159:19370,LH00995:25:23T55JLT4:5:2289:21371:21598,LH00995:25:23T55JLT4:5:2392:14866:18992,LH00995:25:23T55JLT4:5:2439:48909:17899,LH00995:25:23T55JLT4:6:1102:40722:2037,LH00995:25:23T55JLT4:6:1177:39031:6311,LH00995:25:23T55JLT4:6:1177:39047:6311,LH00995:25:23T55JLT4:6:1228:22948:20827,LH00995:25:23T55JLT4:6:1343:20206:5120,LH00995:25:23T55JLT4:6:1393:45082:24975,LH00995:25:23T55JLT4:6:1421:37227:29277,LH00995:25:23T55JLT4:6:1443:33303:20603,LH00995:25:23T55JLT4:6:1472:25181:7572,LH00995:25:23T55JLT4:6:1479:14260:19510,LH00995:25:23T55JLT4:6:2156:24388:21724,LH00995:25:23T55JLT4:6:2172:49815:5064,LH00995:25:23T55JLT4:6:2244:15190:13023,LH00995:25:23T55JLT4:6:2291:47809:24905,LH00995:25:23T55JLT4:6:2317:40803:29053,LH00995:25:23T55JLT4:6:2383:47372:23812,LH00995:25:23T55JLT4:6:2492:42008:14354,LH00995:25:23T55JLT4:7:1172:48464:19314,LH00995:25:23T55JLT4:7:1172:48480:19314,LH00995:25:23T55JLT4:7:1174:40601:11635,LH00995:25:23T55JLT4:7:1294:2901:26909,LH00995:25:23T55JLT4:7:1355:37559:24639,LH00995:25:23T55JLT4:7:1381:33271:17801,LH00995:25:23T55JLT4:7:1381:33279:17815,LH00995:25:23T55JLT4:7:1383:51619:27441,LH00995:25:23T55JLT4:7:1461:13653:17114,LH00995:25:23T55JLT4:7:1481:43416:13205,LH00995:25:23T55JLT4:7:1494:36321:10360,LH00995:25:23T55JLT4:7:2105:20473:10542,LH00995:25:23T55JLT4:7:2132:13313:4111,LH00995:25:23T55JLT4:7:2254:11727:20001,LH00995:25:23T55JLT4:7:2265:39282:16638,LH00995:25:23T55JLT4:7:2281:17407:3971,LH00995:25:23T55JLT4:7:2330:30917:22271,LH00995:25:23T55JLT4:7:2385:8103:6885,LH00995:25:23T55JLT4:7:2460:38521:7726,LH00995:25:23T55JLT4:7:2462:24437:11439,LH00995:25:23T55JLT4:7:2478:37365:18137,LH00995:25:23T55JLT4:8:1207:18936:12924,LH00995:25:23T55JLT4:8:1303:45665:17016,LH00995:25:23T55JLT4:8:1367:37089:18529,LH00995:25:23T55JLT4:8:1369:8588:18992,LH00995:25:23T55JLT4:8:1369:8597:19006,LH00995:25:23T55JLT4:8:1391:15133:10010,LH00995:25:23T55JLT4:8:1391:15141:9996,LH00995:25:23T55JLT4:8:1491:46903:5064,LH00995:25:23T55JLT4:8:2104:11938:19776,LH00995:25:23T55JLT4:8:2124:25480:7810,LH00995:25:23T55JLT4:8:2130:18466:7067,LH00995:25:23T55JLT4:8:2170:46636:19286,LH00995:25:23T55JLT4:8:2183:38894:9800,LH00995:25:23T55JLT4:8:2286:21306:15489,LH00995:25:23T55JLT4:8:2390:29671:18684,LH00995:25:23T55JLT4:8:2417:40932:1981,LH00995:25:23T55JLT4:8:2447:13442:12966,LH00995:25:23T55JLT4:8:2477:4689:10444	.	.	3'UTR/splice-site	intergenic	109	143	+/+	./-	.	252	ENST00000561573	.	translocation	0.005997908985858141	0.40509915014164305	0.20554852956375058																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	183		183	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(85),mismatches(1)	high	translocation	CDS/splice-site	intergenic	18064	210	85.0	1.0	0.0	0.0									45	138		duplicates(85),mismatches(1)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	18064	210	downstream	downstream	0		duplicates(85),mismatches(1)	TCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATTCATCA	AC091167.6	MYC(4688),PVT1(46887)	ENSG00000275674	.	.	LH00995:25:23T55JLT4:1:1139:48189:2443,LH00995:25:23T55JLT4:1:1193:26928:25956,LH00995:25:23T55JLT4:1:1213:33190:23826,LH00995:25:23T55JLT4:1:1271:38675:15194,LH00995:25:23T55JLT4:1:1292:3540:6549,LH00995:25:23T55JLT4:1:1445:13612:16007,LH00995:25:23T55JLT4:1:1446:11468:13135,LH00995:25:23T55JLT4:1:1446:20189:1224,LH00995:25:23T55JLT4:1:1484:41822:20701,LH00995:25:23T55JLT4:1:2130:6064:2653,LH00995:25:23T55JLT4:1:2131:24024:12070,LH00995:25:23T55JLT4:1:2148:23393:10725,LH00995:25:23T55JLT4:1:2164:8944:8455,LH00995:25:23T55JLT4:1:2223:13038:6605,LH00995:25:23T55JLT4:1:2226:48181:17619,LH00995:25:23T55JLT4:1:2338:21176:21122,LH00995:25:23T55JLT4:1:2385:48602:2513,LH00995:25:23T55JLT4:1:2456:32672:7348,LH00995:25:23T55JLT4:2:1163:4357:9085,LH00995:25:23T55JLT4:2:1173:16153:20996,LH00995:25:23T55JLT4:2:1214:11849:17745,LH00995:25:23T55JLT4:2:1258:29655:15853,LH00995:25:23T55JLT4:2:1262:5627:26867,LH00995:25:23T55JLT4:2:1316:50398:7249,LH00995:25:23T55JLT4:2:1372:24332:27904,LH00995:25:23T55JLT4:2:1435:13879:21066,LH00995:25:23T55JLT4:2:1444:46247:16652,LH00995:25:23T55JLT4:2:1465:29088:22803,LH00995:25:23T55JLT4:2:1473:37316:7179,LH00995:25:23T55JLT4:2:1485:47267:14186,LH00995:25:23T55JLT4:2:1485:47283:14186,LH00995:25:23T55JLT4:2:2118:48780:8735,LH00995:25:23T55JLT4:2:2127:23879:27539,LH00995:25:23T55JLT4:2:2187:41749:4181,LH00995:25:23T55JLT4:2:2187:41757:4195,LH00995:25:23T55JLT4:2:2231:26338:1673,LH00995:25:23T55JLT4:2:2289:46846:8300,LH00995:25:23T55JLT4:2:2317:24299:24092,LH00995:25:23T55JLT4:2:2457:5814:23266,LH00995:25:23T55JLT4:2:2470:12156:6759,LH00995:25:23T55JLT4:3:1138:32373:9015,LH00995:25:23T55JLT4:3:1139:9308:1603,LH00995:25:23T55JLT4:3:1142:14834:9519,LH00995:25:23T55JLT4:3:1161:11096:14452,LH00995:25:23T55JLT4:3:1231:4810:1603,LH00995:25:23T55JLT4:3:1365:9818:25970,LH00995:25:23T55JLT4:3:1417:34023:23223,LH00995:25:23T55JLT4:3:1424:46207:18235,LH00995:25:23T55JLT4:3:1431:27155:21276,LH00995:25:23T55JLT4:3:1444:18046:21780,LH00995:25:23T55JLT4:3:1471:47606:21276,LH00995:25:23T55JLT4:3:1483:44152:11509,LH00995:25:23T55JLT4:3:2124:41579:3578,LH00995:25:23T55JLT4:3:2135:38424:14844,LH00995:25:23T55JLT4:3:2155:12763:13219,LH00995:25:23T55JLT4:3:2168:26039:1827,LH00995:25:23T55JLT4:3:2168:5498:1757,LH00995:25:23T55JLT4:3:2205:28741:28282,LH00995:25:23T55JLT4:3:2241:13863:24316,LH00995:25:23T55JLT4:3:2266:12010:3648,LH00995:25:23T55JLT4:3:2275:22414:4405,LH00995:25:23T55JLT4:3:2298:50284:24597,LH00995:25:23T55JLT4:3:2363:24550:7544,LH00995:25:23T55JLT4:3:2386:51109:14059,LH00995:25:23T55JLT4:3:2408:18491:25185,LH00995:25:23T55JLT4:3:2447:33538:10753,LH00995:25:23T55JLT4:3:2466:30189:10612,LH00995:25:23T55JLT4:4:1164:47809:2906,LH00995:25:23T55JLT4:4:1173:37793:18011,LH00995:25:23T55JLT4:4:1261:26314:15671,LH00995:25:23T55JLT4:4:1312:44589:3774,LH00995:25:23T55JLT4:4:1406:29784:3494,LH00995:25:23T55JLT4:4:1416:47477:19538,LH00995:25:23T55JLT4:4:1448:14001:6899,LH00995:25:23T55JLT4:4:1448:14009:6913,LH00995:25:23T55JLT4:4:1455:26653:15222,LH00995:25:23T55JLT4:4:2111:12164:12350,LH00995:25:23T55JLT4:4:2173:51635:16988,LH00995:25:23T55JLT4:4:2217:28336:21836,LH00995:25:23T55JLT4:4:2234:26386:7894,LH00995:25:23T55JLT4:4:2261:27535:20757,LH00995:25:23T55JLT4:4:2312:38578:27918,LH00995:25:23T55JLT4:4:2315:50956:18838,LH00995:25:23T55JLT4:4:2395:34873:23518,LH00995:25:23T55JLT4:4:2473:50948:20449,LH00995:25:23T55JLT4:4:2486:7084:15909,LH00995:25:23T55JLT4:4:2494:38918:10542,LH00995:25:23T55JLT4:5:1128:46239:28352,LH00995:25:23T55JLT4:5:1128:46247:28338,LH00995:25:23T55JLT4:5:1140:15166:20099,LH00995:25:23T55JLT4:5:1166:29024:29697,LH00995:25:23T55JLT4:5:1178:29283:29221,LH00995:25:23T55JLT4:5:1370:3751:28044,LH00995:25:23T55JLT4:5:1385:39136:19748,LH00995:25:23T55JLT4:5:1386:40900:4307,LH00995:25:23T55JLT4:5:1427:15384:24092,LH00995:25:23T55JLT4:5:1476:29404:17549,LH00995:25:23T55JLT4:5:1495:4058:18880,LH00995:25:23T55JLT4:5:1496:25861:21332,LH00995:25:23T55JLT4:5:2106:23806:8805,LH00995:25:23T55JLT4:5:2155:40657:28184,LH00995:25:23T55JLT4:5:2201:46514:17899,LH00995:25:23T55JLT4:5:2246:13305:20155,LH00995:25:23T55JLT4:5:2250:38570:1252,LH00995:25:23T55JLT4:5:2313:37413:24667,LH00995:25:23T55JLT4:5:2328:20303:14368,LH00995:25:23T55JLT4:5:2342:28061:17577,LH00995:25:23T55JLT4:5:2388:23612:24134,LH00995:25:23T55JLT4:5:2480:46644:22747,LH00995:25:23T55JLT4:5:2489:22066:3270,LH00995:25:23T55JLT4:5:2489:28854:18053,LH00995:25:23T55JLT4:5:2493:9114:2836,LH00995:25:23T55JLT4:6:1146:3929:11173,LH00995:25:23T55JLT4:6:1182:21087:17885,LH00995:25:23T55JLT4:6:1184:44929:7474,LH00995:25:23T55JLT4:6:1204:37801:29599,LH00995:25:23T55JLT4:6:1214:23296:2373,LH00995:25:23T55JLT4:6:1217:14041:4615,LH00995:25:23T55JLT4:6:1298:26225:10977,LH00995:25:23T55JLT4:6:1298:50996:23308,LH00995:25:23T55JLT4:6:1316:4924:18277,LH00995:25:23T55JLT4:6:1322:40835:13163,LH00995:25:23T55JLT4:6:1360:19809:5806,LH00995:25:23T55JLT4:6:1428:33635:27651,LH00995:25:23T55JLT4:6:1434:46611:4615,LH00995:25:23T55JLT4:6:1439:17900:16680,LH00995:25:23T55JLT4:6:1463:14980:7866,LH00995:25:23T55JLT4:6:1463:30294:15727,LH00995:25:23T55JLT4:6:1479:18685:1729,LH00995:25:23T55JLT4:6:1493:6307:26699,LH00995:25:23T55JLT4:6:2136:44459:21178,LH00995:25:23T55JLT4:6:2155:38028:14690,LH00995:25:23T55JLT4:6:2204:29024:19804,LH00995:25:23T55JLT4:6:2218:22762:12854,LH00995:25:23T55JLT4:6:2226:12860:28408,LH00995:25:23T55JLT4:6:2251:29711:29403,LH00995:25:23T55JLT4:6:2327:10336:5764,LH00995:25:23T55JLT4:6:2356:33603:3438,LH00995:25:23T55JLT4:6:2365:29008:19272,LH00995:25:23T55JLT4:6:2368:39177:7039,LH00995:25:23T55JLT4:6:2371:30925:20099,LH00995:25:23T55JLT4:6:2448:45390:19678,LH00995:25:23T55JLT4:7:1105:5166:21724,LH00995:25:23T55JLT4:7:1168:30933:2485,LH00995:25:23T55JLT4:7:1168:6161:15068,LH00995:25:23T55JLT4:7:1174:25780:10626,LH00995:25:23T55JLT4:7:1212:28724:9393,LH00995:25:23T55JLT4:7:1276:20060:27287,LH00995:25:23T55JLT4:7:1316:52048:7137,LH00995:25:23T55JLT4:7:1328:25416:24541,LH00995:25:23T55JLT4:7:1396:33012:18669,LH00995:25:23T55JLT4:7:1425:30342:7123,LH00995:25:23T55JLT4:7:1441:45552:7095,LH00995:25:23T55JLT4:7:1441:45560:7081,LH00995:25:23T55JLT4:7:1446:22908:28072,LH00995:25:23T55JLT4:7:1457:28045:2808,LH00995:25:23T55JLT4:7:1473:14826:7179,LH00995:25:23T55JLT4:7:1482:15004:19622,LH00995:25:23T55JLT4:7:1487:8402:11635,LH00995:25:23T55JLT4:7:2116:23717:18319,LH00995:25:23T55JLT4:7:2129:31596:22803,LH00995:25:23T55JLT4:7:2131:9317:10220,LH00995:25:23T55JLT4:7:2132:38238:17801,LH00995:25:23T55JLT4:7:2177:36200:23097,LH00995:25:23T55JLT4:7:2178:48238:21136,LH00995:25:23T55JLT4:7:2202:2116:15349,LH00995:25:23T55JLT4:7:2309:44775:27777,LH00995:25:23T55JLT4:7:2405:47793:20029,LH00995:25:23T55JLT4:7:2419:50325:20267,LH00995:25:23T55JLT4:7:2420:20732:25844,LH00995:25:23T55JLT4:7:2439:47364:20715,LH00995:25:23T55JLT4:7:2468:17771:8777,LH00995:25:23T55JLT4:8:1109:14405:12028,LH00995:25:23T55JLT4:8:1111:30893:16680,LH00995:25:23T55JLT4:8:1192:27430:20015,LH00995:25:23T55JLT4:8:1197:9317:8595,LH00995:25:23T55JLT4:8:1215:36475:21696,LH00995:25:23T55JLT4:8:1227:15319:19608,LH00995:25:23T55JLT4:8:1279:49435:27974,LH00995:25:23T55JLT4:8:1291:23183:3186,LH00995:25:23T55JLT4:8:1292:2497:11803,LH00995:25:23T55JLT4:8:1292:2505:11817,LH00995:25:23T55JLT4:8:1348:37987:21682,LH00995:25:23T55JLT4:8:1364:44379:19861,LH00995:25:23T55JLT4:8:1460:21888:29445,LH00995:25:23T55JLT4:8:1475:2327:25550,LH00995:25:23T55JLT4:8:1483:9122:29501,LH00995:25:23T55JLT4:8:1493:36580:26334,LH00995:25:23T55JLT4:8:2123:27430:14634,LH00995:25:23T55JLT4:8:2150:22649:8847,LH00995:25:23T55JLT4:8:2171:20060:14900,LH00995:25:23T55JLT4:8:2177:24542:25213,LH00995:25:23T55JLT4:8:2178:13904:22649,LH00995:25:23T55JLT4:8:2224:6736:18669,LH00995:25:23T55JLT4:8:2276:39638:28548,LH00995:25:23T55JLT4:8:2315:14664:11607,LH00995:25:23T55JLT4:8:2330:47760:14452,LH00995:25:23T55JLT4:8:2394:47809:6633,LH00995:25:23T55JLT4:8:2433:39638:28128,LH00995:25:23T55JLT4:8:2437:41296:6871,LH00995:25:23T55JLT4:8:2439:45357:9225,LH00995:25:23T55JLT4:8:2448:12884:12448,LH00995:25:23T55JLT4:8:2474:40803:9800,LH00995:25:23T55JLT4:8:2488:5304:12294,LH00995:25:23T55JLT4:1:1150:44937:13261,LH00995:25:23T55JLT4:1:1330:22722:13961,LH00995:25:23T55JLT4:1:1480:46870:16526,LH00995:25:23T55JLT4:1:2158:11404:21122,LH00995:25:23T55JLT4:1:2197:37073:17717,LH00995:25:23T55JLT4:1:2208:44864:2457,LH00995:25:23T55JLT4:1:2215:45932:19748,LH00995:25:23T55JLT4:1:2250:15457:12896,LH00995:25:23T55JLT4:1:2251:33538:10108,LH00995:25:23T55JLT4:1:2476:17309:18543,LH00995:25:23T55JLT4:2:1470:42850:3452,LH00995:25:23T55JLT4:2:2226:41741:12574,LH00995:25:23T55JLT4:2:2237:31831:24807,LH00995:25:23T55JLT4:2:2273:1987:16245,LH00995:25:23T55JLT4:2:2404:47930:26208,LH00995:25:23T55JLT4:2:2408:12706:5610,LH00995:25:23T55JLT4:2:2433:14001:16203,LH00995:25:23T55JLT4:3:2113:25416:22915,LH00995:25:23T55JLT4:3:2130:17860:3298,LH00995:25:23T55JLT4:3:2436:46126:15068,LH00995:25:23T55JLT4:4:1138:41329:23966,LH00995:25:23T55JLT4:4:1413:14818:21934,LH00995:25:23T55JLT4:4:1474:30755:28744,LH00995:25:23T55JLT4:4:1474:30763:28758,LH00995:25:23T55JLT4:4:1482:27034:13667,LH00995:25:23T55JLT4:4:1482:27042:13681,LH00995:25:23T55JLT4:4:2165:40042:12210,LH00995:25:23T55JLT4:4:2193:16492:23181,LH00995:25:23T55JLT4:4:2277:21524:29375,LH00995:25:23T55JLT4:4:2288:50608:15405,LH00995:25:23T55JLT4:4:2367:20594:13219,LH00995:25:23T55JLT4:4:2394:13127:4433,LH00995:25:23T55JLT4:4:2420:37138:22397,LH00995:25:23T55JLT4:5:1449:13281:3830,LH00995:25:23T55JLT4:5:2147:45301:24961,LH00995:25:23T55JLT4:5:2181:43044:5470,LH00995:25:23T55JLT4:5:2234:3888:12280,LH00995:25:23T55JLT4:5:2289:21371:21598,LH00995:25:23T55JLT4:6:1177:39031:6311,LH00995:25:23T55JLT4:6:1177:39047:6311,LH00995:25:23T55JLT4:6:1228:22948:20827,LH00995:25:23T55JLT4:6:1421:37227:29277,LH00995:25:23T55JLT4:6:1472:25181:7572,LH00995:25:23T55JLT4:6:1479:14260:19510,LH00995:25:23T55JLT4:6:2317:40803:29053,LH00995:25:23T55JLT4:6:2383:47372:23812,LH00995:25:23T55JLT4:7:1355:37559:24639,LH00995:25:23T55JLT4:7:1381:33271:17801,LH00995:25:23T55JLT4:7:1381:33279:17815,LH00995:25:23T55JLT4:7:1383:51619:27441,LH00995:25:23T55JLT4:7:1481:43416:13205,LH00995:25:23T55JLT4:7:2105:20473:10542,LH00995:25:23T55JLT4:7:2132:13313:4111,LH00995:25:23T55JLT4:7:2254:11727:20001,LH00995:25:23T55JLT4:7:2462:24437:11439,LH00995:25:23T55JLT4:7:2478:37365:18137,LH00995:25:23T55JLT4:8:1303:45665:17016,LH00995:25:23T55JLT4:8:1391:15133:10010,LH00995:25:23T55JLT4:8:1391:15141:9996,LH00995:25:23T55JLT4:8:1491:46903:5064,LH00995:25:23T55JLT4:8:2104:11938:19776,LH00995:25:23T55JLT4:8:2124:25480:7810,LH00995:25:23T55JLT4:8:2170:46636:19286,LH00995:25:23T55JLT4:8:2390:29671:18684,LH00995:25:23T55JLT4:8:2417:40932:1981	.	.	CDS/splice-site	intergenic	45	138	+/+	./-	.	183	ENST00000622269	.	translocation	0.0024849522336959523	0.39655172413793105	0.1995183381858135																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	252		252	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(101),mismatches(1)	high	translocation	3'UTR/splice-site	intergenic	18064	210	101.0	1.0	0.0	0.0									109	143		duplicates(101),mismatches(1)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	18064	210	downstream	downstream	0		duplicates(101),mismatches(1)	ACGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATTC	AC091167.2	MYC(4688),PVT1(46887)	ENSG00000261147	.	.	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56,LH00995:25:23T55JLT4:3:1225:50422:15923,LH00995:25:23T55JLT4:3:1255:13386:4881,LH00995:25:23T55JLT4:3:1256:49750:2569,LH00995:25:23T55JLT4:3:1256:49758:2583,LH00995:25:23T55JLT4:3:2113:25416:22915,LH00995:25:23T55JLT4:3:2130:17860:3298,LH00995:25:23T55JLT4:3:2237:12795:27175,LH00995:25:23T55JLT4:3:2255:32413:19762,LH00995:25:23T55JLT4:3:2265:42615:18067,LH00995:25:23T55JLT4:3:2345:7254:18922,LH00995:25:23T55JLT4:3:2379:33465:5246,LH00995:25:23T55JLT4:3:2436:46126:15068,LH00995:25:23T55JLT4:3:2463:4649:24443,LH00995:25:23T55JLT4:3:2473:49451:20519,LH00995:25:23T55JLT4:4:1138:41329:23966,LH00995:25:23T55JLT4:4:1374:34727:8917,LH00995:25:23T55JLT4:4:1413:14818:21934,LH00995:25:23T55JLT4:4:1474:30755:28744,LH00995:25:23T55JLT4:4:1474:30763:28758,LH00995:25:23T55JLT4:4:1482:27034:13667,LH00995:25:23T55JLT4:4:1482:27042:13681,LH00995:25:23T55JLT4:4:2165:40042:12210,LH00995:25:23T55JLT4:4:2167:20812:9225,LH00995:25:23T55JLT4:4:2193:16492:23181,LH00995:25:23T55JLT4:4:2277:21524:29375,LH00995:25:23T55JLT4:4:2288:50608:15405,LH00995:25:23T55JLT4:4:2319:27980:23546,LH00995:25:23T55JLT4:4:2367:20594:13219,LH00995:25:23T55JLT4:4:2394:13127:4433,LH00995:25:23T55JLT4:4:2420:37138:22397,LH00995:25:23T55JLT4:4:2437:7965:21696,LH00995:25:23T55JLT4:4:2443:48674:23994,LH00995:25:23T55JLT4:5:1187:31321:22439,LH00995:25:23T55JLT4:5:1225:28296:7278,LH00995:25:23T55JLT4:5:1350:22600:4391,LH00995:25:23T55JLT4:5:1449:13281:3830,LH00995:25:23T55JLT4:5:1496:28854:5274,LH00995:25:23T55JLT4:5:2147:45301:24961,LH00995:25:23T55JLT4:5:2150:37696:19132,LH00995:25:23T55JLT4:5:2181:43044:5470,LH00995:25:23T55JLT4:5:2234:3888:12280,LH00995:25:23T55JLT4:5:2275:23159:19370,LH00995:25:23T55JLT4:5:2289:21371:21598,LH00995:25:23T55JLT4:5:2392:14866:18992,LH00995:25:23T55JLT4:5:2439:48909:17899,LH00995:25:23T55JLT4:6:1102:40722:2037,LH00995:25:23T55JLT4:6:1177:39031:6311,LH00995:25:23T55JLT4:6:1177:39047:6311,LH00995:25:23T55JLT4:6:1228:22948:20827,LH00995:25:23T55JLT4:6:1343:20206:5120,LH00995:25:23T55JLT4:6:1393:45082:24975,LH00995:25:23T55JLT4:6:1421:37227:29277,LH00995:25:23T55JLT4:6:1443:33303:20603,LH00995:25:23T55JLT4:6:1472:25181:7572,LH00995:25:23T55JLT4:6:1479:14260:19510,LH00995:25:23T55JLT4:6:2156:24388:21724,LH00995:25:23T55JLT4:6:2172:49815:5064,LH00995:25:23T55JLT4:6:2244:15190:13023,LH00995:25:23T55JLT4:6:2291:47809:24905,LH00995:25:23T55JLT4:6:2317:40803:29053,LH00995:25:23T55JLT4:6:2383:47372:23812,LH00995:25:23T55JLT4:6:2492:42008:14354,LH00995:25:23T55JLT4:7:1172:48464:19314,LH00995:25:23T55JLT4:7:1172:48480:19314,LH00995:25:23T55JLT4:7:1174:40601:11635,LH00995:25:23T55JLT4:7:1294:2901:26909,LH00995:25:23T55JLT4:7:1355:37559:24639,LH00995:25:23T55JLT4:7:1381:33271:17801,LH00995:25:23T55JLT4:7:1381:33279:17815,LH00995:25:23T55JLT4:7:1383:51619:27441,LH00995:25:23T55JLT4:7:1461:13653:17114,LH00995:25:23T55JLT4:7:1481:43416:13205,LH00995:25:23T55JLT4:7:1494:36321:10360,LH00995:25:23T55JLT4:7:2105:20473:10542,LH00995:25:23T55JLT4:7:2132:13313:4111,LH00995:25:23T55JLT4:7:2254:11727:20001,LH00995:25:23T55JLT4:7:2265:39282:16638,LH00995:25:23T55JLT4:7:2281:17407:3971,LH00995:25:23T55JLT4:7:2330:30917:22271,LH00995:25:23T55JLT4:7:2385:8103:6885,LH00995:25:23T55JLT4:7:2460:38521:7726,LH00995:25:23T55JLT4:7:2462:24437:11439,LH00995:25:23T55JLT4:7:2478:37365:18137,LH00995:25:23T55JLT4:8:1207:18936:12924,LH00995:25:23T55JLT4:8:1303:45665:17016,LH00995:25:23T55JLT4:8:1367:37089:18529,LH00995:25:23T55JLT4:8:1369:8588:18992,LH00995:25:23T55JLT4:8:1369:8597:19006,LH00995:25:23T55JLT4:8:1391:15133:10010,LH00995:25:23T55JLT4:8:1391:15141:9996,LH00995:25:23T55JLT4:8:1491:46903:5064,LH00995:25:23T55JLT4:8:2104:11938:19776,LH00995:25:23T55JLT4:8:2124:25480:7810,LH00995:25:23T55JLT4:8:2130:18466:7067,LH00995:25:23T55JLT4:8:2170:46636:19286,LH00995:25:23T55JLT4:8:2183:38894:9800,LH00995:25:23T55JLT4:8:2286:21306:15489,LH00995:25:23T55JLT4:8:2390:29671:18684,LH00995:25:23T55JLT4:8:2417:40932:1981,LH00995:25:23T55JLT4:8:2447:13442:12966,LH00995:25:23T55JLT4:8:2477:4689:10444	.	.	3'UTR/splice-site	intergenic	109	143	+/+	./-	.	252	ENST00000561573	.	translocation	0.005997908985858141	0.40509915014164305	0.20554852956375058																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	183		183	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(85),mismatches(1)	high	translocation	CDS/splice-site	intergenic	18064	210	85.0	1.0	0.0	0.0									45	138		duplicates(85),mismatches(1)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	18064	210	downstream	downstream	0		duplicates(85),mismatches(1)	TCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATTCATCA	AC091167.6	MYC(4688),PVT1(46887)	ENSG00000275674	.	.	LH00995:25:23T55JLT4:1:1139:48189:2443,LH00995:25:23T55JLT4:1:1193:26928:25956,LH00995:25:23T55JLT4:1:1213:33190:23826,LH00995:25:23T55JLT4:1:1271:38675:15194,LH00995:25:23T55JLT4:1:1292:3540:6549,LH00995:25:23T55JLT4:1:1445:13612:16007,LH00995:25:23T55JLT4:1:1446:11468:13135,LH00995:25:23T55JLT4:1:1446:20189:1224,LH00995:25:23T55JLT4:1:1484:41822:20701,LH00995:25:23T55JLT4:1:2130:6064:2653,LH00995:25:23T55JLT4:1:2131:24024:12070,LH00995:25:23T55JLT4:1:2148:23393:10725,LH00995:25:23T55JLT4:1:2164:8944:8455,LH00995:25:23T55JLT4:1:2223:13038:6605,LH00995:25:23T55JLT4:1:2226:48181:17619,LH00995:25:23T55JLT4:1:2338:21176:21122,LH00995:25:23T55JLT4:1:2385:48602:2513,LH00995:25:23T55JLT4:1:2456:32672:7348,LH00995:25:23T55JLT4:2:1163:4357:9085,LH00995:25:23T55JLT4:2:1173:16153:20996,LH00995:25:23T55JLT4:2:1214:11849:17745,LH00995:25:23T55JLT4:2:1258:29655:15853,LH00995:25:23T55JLT4:2:1262:5627:26867,LH00995:25:23T55JLT4:2:1316:50398:7249,LH00995:25:23T55JLT4:2:1372:24332:27904,LH00995:25:23T55JLT4:2:1435:13879:21066,LH00995:25:23T55JLT4:2:1444:46247:16652,LH00995:25:23T55JLT4:2:1465:29088:22803,LH00995:25:23T55JLT4:2:1473:37316:7179,LH00995:25:23T55JLT4:2:1485:47267:14186,LH00995:25:23T55JLT4:2:1485:47283:14186,LH00995:25:23T55JLT4:2:2118:48780:8735,LH00995:25:23T55JLT4:2:2127:23879:27539,LH00995:25:23T55JLT4:2:2187:41749:4181,LH00995:25:23T55JLT4:2:2187:41757:4195,LH00995:25:23T55JLT4:2:2231:26338:1673,LH00995:25:23T55JLT4:2:2289:46846:8300,LH00995:25:23T55JLT4:2:2317:24299:24092,LH00995:25:23T55JLT4:2:2457:5814:23266,LH00995:25:23T55JLT4:2:2470:12156:6759,LH00995:25:23T55JLT4:3:1138:32373:9015,LH00995:25:23T55JLT4:3:1139:9308:1603,LH00995:25:23T55JLT4:3:1142:14834:9519,LH00995:25:23T55JLT4:3:1161:11096:14452,LH00995:25:23T55JLT4:3:1231:4810:1603,LH00995:25:23T55JLT4:3:1365:9818:25970,LH00995:25:23T55JLT4:3:1417:34023:23223,LH00995:25:23T55JLT4:3:1424:46207:18235,LH00995:25:23T55JLT4:3:1431:27155:21276,LH00995:25:23T55JLT4:3:1444:18046:21780,LH00995:25:23T55JLT4:3:1471:47606:21276,LH00995:25:23T55JLT4:3:1483:44152:11509,LH00995:25:23T55JLT4:3:2124:41579:3578,LH00995:25:23T55JLT4:3:2135:38424:14844,LH00995:25:23T55JLT4:3:2155:12763:13219,LH00995:25:23T55JLT4:3:2168:26039:1827,LH00995:25:23T55JLT4:3:2168:5498:1757,LH00995:25:23T55JLT4:3:2205:28741:28282,LH00995:25:23T55JLT4:3:2241:13863:24316,LH00995:25:23T55JLT4:3:2266:12010:3648,LH00995:25:23T55JLT4:3:2275:22414:4405,LH00995:25:23T55JLT4:3:2298:50284:24597,LH00995:25:23T55JLT4:3:2363:24550:7544,LH00995:25:23T55JLT4:3:2386:51109:14059,LH00995:25:23T55JLT4:3:2408:18491:25185,LH00995:25:23T55JLT4:3:2447:33538:10753,LH00995:25:23T55JLT4:3:2466:30189:10612,LH00995:25:23T55JLT4:4:1164:47809:2906,LH00995:25:23T55JLT4:4:1173:37793:18011,LH00995:25:23T55JLT4:4:1261:26314:15671,LH00995:25:23T55JLT4:4:1312:44589:3774,LH00995:25:23T55JLT4:4:1406:29784:3494,LH00995:25:23T55JLT4:4:1416:47477:19538,LH00995:25:23T55JLT4:4:1448:14001:6899,LH00995:25:23T55JLT4:4:1448:14009:6913,LH00995:25:23T55JLT4:4:1455:26653:15222,LH00995:25:23T55JLT4:4:2111:12164:12350,LH00995:25:23T55JLT4:4:2173:51635:16988,LH00995:25:23T55JLT4:4:2217:28336:21836,LH00995:25:23T55JLT4:4:2234:26386:7894,LH00995:25:23T55JLT4:4:2261:27535:20757,LH00995:25:23T55JLT4:4:2312:38578:27918,LH00995:25:23T55JLT4:4:2315:50956:18838,LH00995:25:23T55JLT4:4:2395:34873:23518,LH00995:25:23T55JLT4:4:2473:50948:20449,LH00995:25:23T55JLT4:4:2486:7084:15909,LH00995:25:23T55JLT4:4:2494:38918:10542,LH00995:25:23T55JLT4:5:1128:46239:28352,LH00995:25:23T55JLT4:5:1128:46247:28338,LH00995:25:23T55JLT4:5:1140:15166:20099,LH00995:25:23T55JLT4:5:1166:29024:29697,LH00995:25:23T55JLT4:5:1178:29283:29221,LH00995:25:23T55JLT4:5:1370:3751:28044,LH00995:25:23T55JLT4:5:1385:39136:19748,LH00995:25:23T55JLT4:5:1386:40900:4307,LH00995:25:23T55JLT4:5:1427:15384:24092,LH00995:25:23T55JLT4:5:1476:29404:17549,LH00995:25:23T55JLT4:5:1495:4058:18880,LH00995:25:23T55JLT4:5:1496:25861:21332,LH00995:25:23T55JLT4:5:2106:23806:8805,LH00995:25:23T55JLT4:5:2155:40657:28184,LH00995:25:23T55JLT4:5:2201:46514:17899,LH00995:25:23T55JLT4:5:2246:13305:20155,LH00995:25:23T55JLT4:5:2250:38570:1252,LH00995:25:23T55JLT4:5:2313:37413:24667,LH00995:25:23T55JLT4:5:2328:20303:14368,LH00995:25:23T55JLT4:5:2342:28061:17577,LH00995:25:23T55JLT4:5:2388:23612:24134,LH00995:25:23T55JLT4:5:2480:46644:22747,LH00995:25:23T55JLT4:5:2489:22066:3270,LH00995:25:23T55JLT4:5:2489:28854:18053,LH00995:25:23T55JLT4:5:2493:9114:2836,LH00995:25:23T55JLT4:6:1146:3929:11173,LH00995:25:23T55JLT4:6:1182:21087:17885,LH00995:25:23T55JLT4:6:1184:44929:7474,LH00995:25:23T55JLT4:6:1204:37801:29599,LH00995:25:23T55JLT4:6:1214:23296:2373,LH00995:25:23T55JLT4:6:1217:14041:4615,LH00995:25:23T55JLT4:6:1298:26225:10977,LH00995:25:23T55JLT4:6:1298:50996:23308,LH00995:25:23T55JLT4:6:1316:4924:18277,LH00995:25:23T55JLT4:6:1322:40835:13163,LH00995:25:23T55JLT4:6:1360:19809:5806,LH00995:25:23T55JLT4:6:1428:33635:27651,LH00995:25:23T55JLT4:6:1434:46611:4615,LH00995:25:23T55JLT4:6:1439:17900:16680,LH00995:25:23T55JLT4:6:1463:14980:7866,LH00995:25:23T55JLT4:6:1463:30294:15727,LH00995:25:23T55JLT4:6:1479:18685:1729,LH00995:25:23T55JLT4:6:1493:6307:26699,LH00995:25:23T55JLT4:6:2136:44459:21178,LH00995:25:23T55JLT4:6:2155:38028:14690,LH00995:25:23T55JLT4:6:2204:29024:19804,LH00995:25:23T55JLT4:6:2218:22762:12854,LH00995:25:23T55JLT4:6:2226:12860:28408,LH00995:25:23T55JLT4:6:2251:29711:29403,LH00995:25:23T55JLT4:6:2327:10336:5764,LH00995:25:23T55JLT4:6:2356:33603:3438,LH00995:25:23T55JLT4:6:2365:29008:19272,LH00995:25:23T55JLT4:6:2368:39177:7039,LH00995:25:23T55JLT4:6:2371:30925:20099,LH00995:25:23T55JLT4:6:2448:45390:19678,LH00995:25:23T55JLT4:7:1105:5166:21724,LH00995:25:23T55JLT4:7:1168:30933:2485,LH00995:25:23T55JLT4:7:1168:6161:15068,LH00995:25:23T55JLT4:7:1174:25780:10626,LH00995:25:23T55JLT4:7:1212:28724:9393,LH00995:25:23T55JLT4:7:1276:20060:27287,LH00995:25:23T55JLT4:7:1316:52048:7137,LH00995:25:23T55JLT4:7:1328:25416:24541,LH00995:25:23T55JLT4:7:1396:33012:18669,LH00995:25:23T55JLT4:7:1425:30342:7123,LH00995:25:23T55JLT4:7:1441:45552:7095,LH00995:25:23T55JLT4:7:1441:45560:7081,LH00995:25:23T55JLT4:7:1446:22908:28072,LH00995:25:23T55JLT4:7:1457:28045:2808,LH00995:25:23T55JLT4:7:1473:14826:7179,LH00995:25:23T55JLT4:7:1482:15004:19622,LH00995:25:23T55JLT4:7:1487:8402:11635,LH00995:25:23T55JLT4:7:2116:23717:18319,LH00995:25:23T55JLT4:7:2129:31596:22803,LH00995:25:23T55JLT4:7:2131:9317:10220,LH00995:25:23T55JLT4:7:2132:38238:17801,LH00995:25:23T55JLT4:7:2177:36200:23097,LH00995:25:23T55JLT4:7:2178:48238:21136,LH00995:25:23T55JLT4:7:2202:2116:15349,LH00995:25:23T55JLT4:7:2309:44775:27777,LH00995:25:23T55JLT4:7:2405:47793:20029,LH00995:25:23T55JLT4:7:2419:50325:20267,LH00995:25:23T55JLT4:7:2420:20732:25844,LH00995:25:23T55JLT4:7:2439:47364:20715,LH00995:25:23T55JLT4:7:2468:17771:8777,LH00995:25:23T55JLT4:8:1109:14405:12028,LH00995:25:23T55JLT4:8:1111:30893:16680,LH00995:25:23T55JLT4:8:1192:27430:20015,LH00995:25:23T55JLT4:8:1197:9317:8595,LH00995:25:23T55JLT4:8:1215:36475:21696,LH00995:25:23T55JLT4:8:1227:15319:19608,LH00995:25:23T55JLT4:8:1279:49435:27974,LH00995:25:23T55JLT4:8:1291:23183:3186,LH00995:25:23T55JLT4:8:1292:2497:11803,LH00995:25:23T55JLT4:8:1292:2505:11817,LH00995:25:23T55JLT4:8:1348:37987:21682,LH00995:25:23T55JLT4:8:1364:44379:19861,LH00995:25:23T55JLT4:8:1460:21888:29445,LH00995:25:23T55JLT4:8:1475:2327:25550,LH00995:25:23T55JLT4:8:1483:9122:29501,LH00995:25:23T55JLT4:8:1493:36580:26334,LH00995:25:23T55JLT4:8:2123:27430:14634,LH00995:25:23T55JLT4:8:2150:22649:8847,LH00995:25:23T55JLT4:8:2171:20060:14900,LH00995:25:23T55JLT4:8:2177:24542:25213,LH00995:25:23T55JLT4:8:2178:13904:22649,LH00995:25:23T55JLT4:8:2224:6736:18669,LH00995:25:23T55JLT4:8:2276:39638:28548,LH00995:25:23T55JLT4:8:2315:14664:11607,LH00995:25:23T55JLT4:8:2330:47760:14452,LH00995:25:23T55JLT4:8:2394:47809:6633,LH00995:25:23T55JLT4:8:2433:39638:28128,LH00995:25:23T55JLT4:8:2437:41296:6871,LH00995:25:23T55JLT4:8:2439:45357:9225,LH00995:25:23T55JLT4:8:2448:12884:12448,LH00995:25:23T55JLT4:8:2474:40803:9800,LH00995:25:23T55JLT4:8:2488:5304:12294,LH00995:25:23T55JLT4:1:1150:44937:13261,LH00995:25:23T55JLT4:1:1330:22722:13961,LH00995:25:23T55JLT4:1:1480:46870:16526,LH00995:25:23T55JLT4:1:2158:11404:21122,LH00995:25:23T55JLT4:1:2197:37073:17717,LH00995:25:23T55JLT4:1:2208:44864:2457,LH00995:25:23T55JLT4:1:2215:45932:19748,LH00995:25:23T55JLT4:1:2250:15457:12896,LH00995:25:23T55JLT4:1:2251:33538:10108,LH00995:25:23T55JLT4:1:2476:17309:18543,LH00995:25:23T55JLT4:2:1470:42850:3452,LH00995:25:23T55JLT4:2:2226:41741:12574,LH00995:25:23T55JLT4:2:2237:31831:24807,LH00995:25:23T55JLT4:2:2273:1987:16245,LH00995:25:23T55JLT4:2:2404:47930:26208,LH00995:25:23T55JLT4:2:2408:12706:5610,LH00995:25:23T55JLT4:2:2433:14001:16203,LH00995:25:23T55JLT4:3:2113:25416:22915,LH00995:25:23T55JLT4:3:2130:17860:3298,LH00995:25:23T55JLT4:3:2436:46126:15068,LH00995:25:23T55JLT4:4:1138:41329:23966,LH00995:25:23T55JLT4:4:1413:14818:21934,LH00995:25:23T55JLT4:4:1474:30755:28744,LH00995:25:23T55JLT4:4:1474:30763:28758,LH00995:25:23T55JLT4:4:1482:27034:13667,LH00995:25:23T55JLT4:4:1482:27042:13681,LH00995:25:23T55JLT4:4:2165:40042:12210,LH00995:25:23T55JLT4:4:2193:16492:23181,LH00995:25:23T55JLT4:4:2277:21524:29375,LH00995:25:23T55JLT4:4:2288:50608:15405,LH00995:25:23T55JLT4:4:2367:20594:13219,LH00995:25:23T55JLT4:4:2394:13127:4433,LH00995:25:23T55JLT4:4:2420:37138:22397,LH00995:25:23T55JLT4:5:1449:13281:3830,LH00995:25:23T55JLT4:5:2147:45301:24961,LH00995:25:23T55JLT4:5:2181:43044:5470,LH00995:25:23T55JLT4:5:2234:3888:12280,LH00995:25:23T55JLT4:5:2289:21371:21598,LH00995:25:23T55JLT4:6:1177:39031:6311,LH00995:25:23T55JLT4:6:1177:39047:6311,LH00995:25:23T55JLT4:6:1228:22948:20827,LH00995:25:23T55JLT4:6:1421:37227:29277,LH00995:25:23T55JLT4:6:1472:25181:7572,LH00995:25:23T55JLT4:6:1479:14260:19510,LH00995:25:23T55JLT4:6:2317:40803:29053,LH00995:25:23T55JLT4:6:2383:47372:23812,LH00995:25:23T55JLT4:7:1355:37559:24639,LH00995:25:23T55JLT4:7:1381:33271:17801,LH00995:25:23T55JLT4:7:1381:33279:17815,LH00995:25:23T55JLT4:7:1383:51619:27441,LH00995:25:23T55JLT4:7:1481:43416:13205,LH00995:25:23T55JLT4:7:2105:20473:10542,LH00995:25:23T55JLT4:7:2132:13313:4111,LH00995:25:23T55JLT4:7:2254:11727:20001,LH00995:25:23T55JLT4:7:2462:24437:11439,LH00995:25:23T55JLT4:7:2478:37365:18137,LH00995:25:23T55JLT4:8:1303:45665:17016,LH00995:25:23T55JLT4:8:1391:15133:10010,LH00995:25:23T55JLT4:8:1391:15141:9996,LH00995:25:23T55JLT4:8:1491:46903:5064,LH00995:25:23T55JLT4:8:2104:11938:19776,LH00995:25:23T55JLT4:8:2124:25480:7810,LH00995:25:23T55JLT4:8:2170:46636:19286,LH00995:25:23T55JLT4:8:2390:29671:18684,LH00995:25:23T55JLT4:8:2417:40932:1981	.	.	CDS/splice-site	intergenic	45	138	+/+	./-	.	183	ENST00000622269	.	translocation	0.0024849522336959523	0.39655172413793105	0.1995183381858135																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	348		348	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(165)	high	translocation	3'UTR/splice-site	intergenic	19112	314	165.0	0.0	0.0	0.0									155	193		duplicates(165)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	19112	314	downstream	downstream	0		duplicates(165)	CGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCAT	AC091167.2	MYC(4688),PVT1(46887)	ENSG00000261147	.	.	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LT4:3:1362:3670:14788,LH00995:25:23T55JLT4:3:1405:51134:5694,LH00995:25:23T55JLT4:3:1418:21452:19272,LH00995:25:23T55JLT4:3:1483:41588:1546,LH00995:25:23T55JLT4:3:2118:4438:2780,LH00995:25:23T55JLT4:3:2177:38958:20757,LH00995:25:23T55JLT4:3:2203:44233:26418,LH00995:25:23T55JLT4:3:2205:51684:12784,LH00995:25:23T55JLT4:3:2251:48375:25045,LH00995:25:23T55JLT4:3:2296:28935:19706,LH00995:25:23T55JLT4:3:2320:13742:7376,LH00995:25:23T55JLT4:3:2337:43303:6227,LH00995:25:23T55JLT4:3:2360:51999:24485,LH00995:25:23T55JLT4:3:2365:5037:9253,LH00995:25:23T55JLT4:3:2367:2084:22579,LH00995:25:23T55JLT4:3:2373:45139:23308,LH00995:25:23T55JLT4:3:2403:12229:9071,LH00995:25:23T55JLT4:3:2457:31613:3242,LH00995:25:23T55JLT4:3:2483:37486:1476,LH00995:25:23T55JLT4:4:1175:32049:28296,LH00995:25:23T55JLT4:4:1242:31791:9660,LH00995:25:23T55JLT4:4:1245:30779:9309,LH00995:25:23T55JLT4:4:1248:15368:1224,LH00995:25:23T55JLT4:4:1273:49224:22088,LH00995:25:23T55JLT4:4:1273:49241:22088,LH00995:25:23T55JLT4:4:1295:21500:6801,LH00995:25:23T55JLT4:4:1310:45268:13919,LH00995:25:23T55JLT4:4:1314:49152:6773,LH00995:25:23T55JLT4:4:1316:12577:4881,LH00995:25:23T55JLT4:4:1326:19567:29123,LH00995:25:23T55JLT4:4:1327:1882:19903,LH00995:25:23T55JLT4:4:1370:38319:7992,LH00995:25:23T55JLT4:4:1374:40698:5610,LH00995:25:23T55JLT4:4:1379:43861:28520,LH00995:25:23T55JLT4:4:1408:47242:24232,LH00995:25:23T55JLT4:4:1408:47251:24218,LH00995:25:23T55JLT4:5:1105:16444:26488,LH00995:25:23T55JLT4:5:1109:1218:23153,LH00995:25:23T55JLT4:5:1122:4236:19861,LH00995:25:23T55JLT4:5:1168:24599:9646,LH00995:25:23T55JLT4:5:1173:1502:18319,LH00995:25:23T55JLT4:5:1226:13232:4139,LH00995:25:23T55JLT4:5:1226:30448:15433,LH00995:25:23T55JLT4:5:1288:38368:26797,LH00995:25:23T55JLT4:5:1293:1623:21108,LH00995:25:23T55JLT4:5:1310:12197:27091,LH00995:25:23T55JLT4:5:1312:45867:18740,LH00995:25:23T55JLT4:5:1329:33352:5834,LH00995:25:23T55JLT4:5:1384:43028:25479,LH00995:25:23T55JLT4:5:1406:33619:17114,LH00995:25:23T55JLT4:5:1417:13637:22299,LH00995:25:23T55JLT4:5:1430:30019:12000,LH00995:25:23T55JLT4:5:1461:34646:7740,LH00995:25:23T55JLT4:5:1476:27794:13947,LH00995:25:23T55JLT4:5:1481:22301:11579,LH00995:25:23T55JLT4:5:2136:30609:21010,LH00995:25:23T55JLT4:5:2164:41385:2093,LH00995:25:23T55JLT4:5:2181:20012:27595,LH00995:25:23T55JLT4:5:2182:34153:12294,LH00995:25:23T55JLT4:5:2249:29663:17380,LH00995:25:23T55JLT4:5:2282:6938:22271,LH00995:25:23T55JLT4:5:2283:31904:1757,LH00995:25:23T55JLT4:5:2315:51967:11621,LH00995:25:23T55JLT4:5:2357:7156:4433,LH00995:25:23T55JLT4:5:2373:13070:14003,LH00995:25:23T55JLT4:5:2373:13086:14003,LH00995:25:23T55JLT4:5:2386:15724:22663,LH00995:25:23T55JLT4:5:2430:48238:1238,LH00995:25:23T55JLT4:5:2463:17528:6591,LH00995:25:23T55JLT4:5:2469:48100:25185,LH00995:25:23T55JLT4:5:2482:11994:10486,LH00995:25:23T55JLT4:5:2490:28603:6409,LH00995:25:23T55JLT4:6:1115:45228:19174,LH00995:25:23T55JLT4:6:1115:45236:19160,LH00995:25:23T55JLT4:6:1203:26265:10038,LH00995:25:23T55JLT4:6:1205:35334:1084,LH00995:25:23T55JLT4:6:1354:25723:26082,LH00995:25:23T55JLT4:6:1370:47477:27161,LH00995:25:23T55JLT4:6:1385:29453:25760,LH00995:25:23T55JLT4:6:1390:41863:16287,LH00995:25:23T55JLT4:6:1392:20877:25423,LH00995:25:23T55JLT4:6:1454:4309:28030,LH00995:25:23T55JLT4:6:1478:23555:1869,LH00995:25:23T55JLT4:6:1482:49710:6227,LH00995:25:23T55JLT4:6:1495:32923:27287,LH00995:25:23T55JLT4:6:2158:14397:13779,LH00995:25:23T55JLT4:6:2190:21759:23812,LH00995:25:23T55JLT4:6:2221:14324:13821,LH00995:25:23T55JLT4:6:2257:34404:18894,LH00995:25:23T55JLT4:6:2260:13531:24302,LH00995:25:23T55JLT4:6:2277:23223:21192,LH00995:25:23T55JLT4:6:2294:38327:19636,LH00995:25:23T55JLT4:6:2333:44031:26572,LH00995:25:23T55JLT4:6:2340:15748:23125,LH00995:25:23T55JLT4:6:2341:30561:23055,LH00995:25:23T55JLT4:6:2356:49912:12574,LH00995:25:23T55JLT4:6:2457:25594:22467,LH00995:25:23T55JLT4:6:2482:22819:10430,LH00995:25:23T55JLT4:8:1103:41596:12826,LH00995:25:23T55JLT4:8:1121:37583:8875,LH00995:25:23T55JLT4:8:1131:40156:7109,LH00995:25:23T55JLT4:8:1135:38165:8539,LH00995:25:23T55JLT4:8:1138:3289:6591,LH00995:25:23T55JLT4:8:1155:37955:1252,LH00995:25:23T55JLT4:8:1246:45673:8539,LH00995:25:23T55JLT4:8:1274:10643:21150,LH00995:25:23T55JLT4:8:1285:26540:8721,LH00995:25:23T55JLT4:8:1316:10643:5512,LH00995:25:23T55JLT4:8:1332:11663:4055,LH00995:25:23T55JLT4:8:1411:32163:4139,LH00995:25:23T55JLT4:8:1411:32179:4139,LH00995:25:23T55JLT4:8:1411:36539:22060,LH00995:25:23T55JLT4:8:1431:41450:8342,LH00995:25:23T55JLT4:8:1436:29250:26474,LH00995:25:23T55JLT4:8:1465:24866:13191,LH00995:25:23T55JLT4:8:1469:16104:7123,LH00995:25:23T55JLT4:8:1475:25343:17408,LH00995:25:23T55JLT4:8:1495:15635:9365,LH00995:25:23T55JLT4:8:2139:27835:1070,LH00995:25:23T55JLT4:8:2147:21136:20043,LH00995:25:23T55JLT4:8:2184:1938:23812,LH00995:25:23T55JLT4:8:2201:51829:27581,LH00995:25:23T55JLT4:8:2204:22900:11719,LH00995:25:23T55JLT4:8:2214:18507:26250,LH00995:25:23T55JLT4:8:2308:15902:12602,LH00995:25:23T55JLT4:8:2313:38716:27567,LH00995:25:23T55JLT4:8:2340:28886:21864,LH00995:25:23T55JLT4:8:2347:17892:16554,LH00995:25:23T55JLT4:8:2354:15813:18950,LH00995:25:23T55JLT4:8:2354:7877:23167,LH00995:25:23T55JLT4:8:2354:7885:23181,LH00995:25:23T55JLT4:8:2356:5320:6829,LH00995:25:23T55JLT4:8:2409:3257:20491,LH00995:25:23T55JLT4:8:2474:24032:4013	.	.	3'UTR/splice-site	intergenic	155	193	+/+	./-	.	348	ENST00000561573	.	translocation	0.008044843514818083	0.3806706114398422	0.19435772747733016																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AC091167--MYC	AC091167--MYC	AC091167--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	AC091167	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	245		245	PASS		AC091167--MYC	AC091167--MYC	confidence:high;duplicates(140)	high	translocation	CDS/splice-site	intergenic	19112	314	140.0	0.0	0.0	0.0									61	184		duplicates(140)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	19112	314	downstream	downstream	0		duplicates(140)	TCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCAT	AC091167.6	MYC(4688),PVT1(46887)	ENSG00000275674	.	.	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1:8875,LH00995:25:23T55JLT4:8:1340:19817:8875,LH00995:25:23T55JLT4:8:1361:38109:8441,LH00995:25:23T55JLT4:8:1376:9349:18740,LH00995:25:23T55JLT4:8:1383:33853:28758,LH00995:25:23T55JLT4:8:1387:22010:3508,LH00995:25:23T55JLT4:8:1408:18046:16988,LH00995:25:23T55JLT4:8:1408:18054:16974,LH00995:25:23T55JLT4:8:1408:18062:16988,LH00995:25:23T55JLT4:8:1409:13928:26502,LH00995:25:23T55JLT4:8:1415:11760:5288,LH00995:25:23T55JLT4:8:1418:50203:23055,LH00995:25:23T55JLT4:8:1421:22414:28814,LH00995:25:23T55JLT4:8:1430:31507:19706,LH00995:25:23T55JLT4:8:1439:7731:10360,LH00995:25:23T55JLT4:8:1456:25011:21402,LH00995:25:23T55JLT4:8:1457:48278:9996,LH00995:25:23T55JLT4:8:1460:37332:7880,LH00995:25:23T55JLT4:8:1464:15319:20029,LH00995:25:23T55JLT4:8:1469:23361:27820,LH00995:25:23T55JLT4:8:1469:23377:27820,LH00995:25:23T55JLT4:8:1498:34371:17689,LH00995:25:23T55JLT4:8:2122:22665:14788,LH00995:25:23T55JLT4:8:2131:16104:17324,LH00995:25:23T55JLT4:8:2139:15036:17717,LH00995:25:23T55JLT4:8:2154:12197:23952,LH00995:25:23T55JLT4:8:2160:36070:21108,LH00995:25:23T55JLT4:8:2178:23086:2093,LH00995:25:23T55JLT4:8:2188:46587:4433,LH00995:25:23T55JLT4:8:2202:19712:16203,LH00995:25:23T55JLT4:8:2207:18248:6997,LH00995:25:23T55JLT4:8:2225:49127:18529,LH00995:25:23T55JLT4:8:2236:9268:19889,LH00995:25:23T55JLT4:8:2247:35836:24709,LH00995:25:23T55JLT4:8:2250:7197:5148,LH00995:25:23T55JLT4:8:2288:16751:27301,LH00995:25:23T55JLT4:8:2297:32583:29669,LH00995:25:23T55JLT4:8:2316:13677:17661,LH00995:25:23T55JLT4:8:2325:41143:26839,LH00995:25:23T55JLT4:8:2333:29647:28366,LH00995:25:23T55JLT4:8:2355:18588:9716,LH00995:25:23T55JLT4:8:2421:30909:20771,LH00995:25:23T55JLT4:8:2425:48302:17436,LH00995:25:23T55JLT4:8:2444:23458:27315,LH00995:25:23T55JLT4:8:2484:23725:18025,LH00995:25:23T55JLT4:8:2498:16282:27245,LH00995:25:23T55JLT4:1:1125:22139:25956,LH00995:25:23T55JLT4:1:1170:4301:9491,LH00995:25:23T55JLT4:1:1175:43869:23826,LH00995:25:23T55JLT4:1:1234:19324:8665,LH00995:25:23T55JLT4:1:1242:36976:22425,LH00995:25:23T55JLT4:1:1306:16614:22691,LH00995:25:23T55JLT4:1:1356:9511:1981,LH00995:25:23T55JLT4:1:1479:21597:18543,LH00995:25:23T55JLT4:1:2151:43375:19160,LH00995:25:23T55JLT4:1:2297:40633:23209,LH00995:25:23T55JLT4:1:2303:14470:20743,LH00995:25:23T55JLT4:1:2314:49224:9337,LH00995:25:23T55JLT4:1:2397:1283:28058,LH00995:25:23T55JLT4:2:1119:34954:8328,LH00995:25:23T55JLT4:2:1178:41361:27413,LH00995:25:23T55JLT4:2:1202:45018:26208,LH00995:25:23T55JLT4:2:1207:5231:20015,LH00995:25:23T55JLT4:2:1237:22422:21038,LH00995:25:23T55JLT4:2:1273:6445:26713,LH00995:25:23T55JLT4:2:1459:1089:18333,LH00995:25:23T55JLT4:2:1473:26338:15461,LH00995:25:23T55JLT4:2:2108:40374:26404,LH00995:25:23T55JLT4:2:2145:32300:21892,LH00995:25:23T55JLT4:2:2151:47081:13191,LH00995:25:23T55JLT4:2:2153:30917:27147,LH00995:25:23T55JLT4:2:2211:48674:12112,LH00995:25:23T55JLT4:2:2280:45107:1841,LH00995:25:23T55JLT4:2:2310:35261:24919,LH00995:25:23T55JLT4:2:2310:5158:19076,LH00995:25:23T55JLT4:2:2380:9648:28450,LH00995:25:23T55JLT4:2:2423:21379:6899,LH00995:25:23T55JLT4:3:1144:6121:8441,LH00995:25:23T55JLT4:3:1217:35925:12924,LH00995:25:23T55JLT4:3:1316:32899:16428,LH00995:25:23T55JLT4:3:1405:51134:5694,LH00995:25:23T55JLT4:3:2203:44233:26418,LH00995:25:23T55JLT4:3:2296:28935:19706,LH00995:25:23T55JLT4:3:2320:13742:7376,LH00995:25:23T55JLT4:3:2360:51999:24485,LH00995:25:23T55JLT4:3:2367:2084:22579,LH00995:25:23T55JLT4:3:2373:45139:23308,LH00995:25:23T55JLT4:4:1175:32049:28296,LH00995:25:23T55JLT4:4:1248:15368:1224,LH00995:25:23T55JLT4:4:1295:21500:6801,LH00995:25:23T55JLT4:4:1327:1882:19903,LH00995:25:23T55JLT4:5:1122:4236:19861,LH00995:25:23T55JLT4:5:1168:24599:9646,LH00995:25:23T55JLT4:5:1226:13232:4139,LH00995:25:23T55JLT4:5:1384:43028:25479,LH00995:25:23T55JLT4:5:2182:34153:12294,LH00995:25:23T55JLT4:5:2249:29663:17380,LH00995:25:23T55JLT4:5:2282:6938:22271,LH00995:25:23T55JLT4:5:2283:31904:1757,LH00995:25:23T55JLT4:5:2357:7156:4433,LH00995:25:23T55JLT4:5:2386:15724:22663,LH00995:25:23T55JLT4:5:2463:17528:6591,LH00995:25:23T55JLT4:6:1115:45228:19174,LH00995:25:23T55JLT4:6:1115:45236:19160,LH00995:25:23T55JLT4:6:1205:35334:1084,LH00995:25:23T55JLT4:6:1354:25723:26082,LH00995:25:23T55JLT4:6:1370:47477:27161,LH00995:25:23T55JLT4:6:1392:20877:25423,LH00995:25:23T55JLT4:6:1454:4309:28030,LH00995:25:23T55JLT4:6:1478:23555:1869,LH00995:25:23T55JLT4:6:2103:11396:7095,LH00995:25:23T55JLT4:6:2257:34404:18894,LH00995:25:23T55JLT4:6:2277:23223:21192,LH00995:25:23T55JLT4:6:2333:44031:26572,LH00995:25:23T55JLT4:6:2340:15748:23125,LH00995:25:23T55JLT4:6:2356:49912:12574,LH00995:25:23T55JLT4:8:1103:41596:12826,LH00995:25:23T55JLT4:8:1131:40156:7109,LH00995:25:23T55JLT4:8:1138:3289:6591,LH00995:25:23T55JLT4:8:1155:37955:1252,LH00995:25:23T55JLT4:8:1246:45673:8539,LH00995:25:23T55JLT4:8:1285:26540:8721,LH00995:25:23T55JLT4:8:1316:10643:5512,LH00995:25:23T55JLT4:8:1411:36539:22060,LH00995:25:23T55JLT4:8:1465:24866:13191,LH00995:25:23T55JLT4:8:1469:16104:7123,LH00995:25:23T55JLT4:8:1495:15635:9365,LH00995:25:23T55JLT4:8:2184:1938:23812,LH00995:25:23T55JLT4:8:2201:51829:27581,LH00995:25:23T55JLT4:8:2214:18507:26250,LH00995:25:23T55JLT4:8:2313:38716:27567,LH00995:25:23T55JLT4:8:2354:15813:18950,LH00995:25:23T55JLT4:8:2409:3257:20491	.	.	CDS/splice-site	intergenic	61	184	+/+	./-	.	245	ENST00000622269	.	translocation	0.0031815573984248684	0.36947791164658633	0.1863297345225056																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	634	509													0	1	False			FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	low	634	509	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	GQYQRSLR|g*	LH00995:25:23T55JLT4:6:2288:46247:20127	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.00196078431372549	0.000980392156862745																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243664772	243304713	chr1:243664772-chr1:243304713	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	4984	326	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243664772	chr1:243304713	chr1:243664772-chr1:243304713	.	.	low	4984	326	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	CGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG|GAGAAGCTAAAACTTACTTATGAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	RPKPNTFIIRCLQWTTVIERTFHVDTPEEr|rs*	LH00995:25:23T55JLT4:1:1394:24089:24204,LH00995:25:23T55JLT4:6:1352:4009:5932	out-of-frame	PH_domain(89%)|Centrosomal_colon_cancer_autoantigen_protein_family(68%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00020060180541624874	0.0	0.00010030090270812437																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	634	509													0	1	False			FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	low	634	509	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	GQYQRSLR|g*	LH00995:25:23T55JLT4:6:2288:46247:20127	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.00196078431372549	0.000980392156862745																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr1	AKT3	SDCCAG8	243664772	243304713	chr1:243664772-chr1:243304713	-,+	Arriba	1	0	1		1	PASS	out-of-frame	AKT3--SDCCAG8	AKT3--SDCCAG8	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	4984	326	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr1:243664772	chr1:243304713	chr1:243664772-chr1:243304713	.	.	low	4984	326	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	CGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG|GAGAAGCTAAAACTTACTTATGAG	AKT3	SDCCAG8	ENSG00000117020	ENSG00000054282	RPKPNTFIIRCLQWTTVIERTFHVDTPEEr|rs*	LH00995:25:23T55JLT4:1:1394:24089:24204,LH00995:25:23T55JLT4:6:1352:4009:5932	out-of-frame	PH_domain(89%)|Centrosomal_colon_cancer_autoantigen_protein_family(68%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000336199	ENST00000366541	inversion	0.00020060180541624874	0.0	0.00010030090270812437																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1--MYC	BMS1--MYC	BMS1--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr10	chr8	BMS1	MYC	42843009	127738248	chr10:42843009-chr8:127738248	+,+	Arriba	1	0	19		19	PASS		BMS1--MYC	BMS1--MYC	confidence:medium;duplicates(7),mismatches(3),multimappers(5)	medium	translocation	intergenic	CDS/splice-site	27	65535	7.0	3.0	0.0	5.0									8	11		duplicates(7),mismatches(3),multimappers(5)		FAIL		False	chr10:42843009	chr8:127738248	chr10:42843009-chr8:127738248	.	.	medium	27	65535	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(7),mismatches(3),multimappers(5)	TGCTTACTGCAACCTCCATCTCCTAGGCTCcAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCTACTACATCTGTCCAAAAGCTGCATTTCCAAGACCAG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACC	BMS1(8072),LINC02623(28512)	MYC	.	ENSG00000136997	.	LH00995:25:23T55JLT4:1:1173:38651:21150,LH00995:25:23T55JLT4:1:1461:38343:13191,LH00995:25:23T55JLT4:1:2253:40293:19482,LH00995:25:23T55JLT4:2:1133:46911:7628,LH00995:25:23T55JLT4:2:1263:4980:4223,LH00995:25:23T55JLT4:3:1203:44047:12308,LH00995:25:23T55JLT4:3:2337:11938:10668,LH00995:25:23T55JLT4:3:2436:50762:13205,LH00995:25:23T55JLT4:4:1431:49702:20141,LH00995:25:23T55JLT4:4:1432:12067:26951,LH00995:25:23T55JLT4:5:1371:16144:15769,LH00995:25:23T55JLT4:5:1410:37623:20603,LH00995:25:23T55JLT4:5:1410:44726:9758,LH00995:25:23T55JLT4:5:2181:13119:4895,LH00995:25:23T55JLT4:6:2278:14025:24569,LH00995:25:23T55JLT4:6:2492:24874:14970,LH00995:25:23T55JLT4:8:1358:47000:5036,LH00995:25:23T55JLT4:1:1202:10206:22439,LH00995:25:23T55JLT4:1:1427:8111:15727,LH00995:25:23T55JLT4:1:2259:52048:20869,LH00995:25:23T55JLT4:2:1407:2521:16077,LH00995:25:23T55JLT4:2:2234:33845:17675,LH00995:25:23T55JLT4:2:2464:21694:17086,LH00995:25:23T55JLT4:3:2139:5563:25830,LH00995:25:23T55JLT4:3:2293:39161:9702,LH00995:25:23T55JLT4:4:1138:43570:25998,LH00995:25:23T55JLT4:4:1207:49605:12098,LH00995:25:23T55JLT4:4:1222:25440:6787,LH00995:25:23T55JLT4:4:1428:36491:2892,LH00995:25:23T55JLT4:5:1162:47793:27175,LH00995:25:23T55JLT4:8:1122:48221:21528,LH00995:25:23T55JLT4:8:1139:42971:27735,LH00995:25:23T55JLT4:8:2229:18911:22831,LH00995:25:23T55JLT4:8:2449:26079:13135	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	intergenic	CDS/splice-site	8	11	./+	+/+	.	19	.	ENST00000621592	translocation	0.22857142857142856	0.0001678210722240869	0.11436962482182633																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1--MYC	BMS1--MYC	BMS1--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr10	chr8	BMS1	MYC	42843009	127738248	chr10:42843009-chr8:127738248	+,+	Arriba	1	0	14		14	PASS		BMS1--MYC	BMS1--MYC	confidence:medium;duplicates(12),mismatches(2),multimappers(8)	medium	translocation	intergenic	CDS/splice-site	26	65535	12.0	2.0	0.0	8.0									4	10		duplicates(12),mismatches(2),multimappers(8)		FAIL		False	chr10:42843009	chr8:127738248	chr10:42843009-chr8:127738248	.	.	medium	26	65535	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(12),mismatches(2),multimappers(8)	TGCTTACTGCAACCTCCATCTCCTAGGCTCcAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCTACTACATCTGTCCAAAAGCTGCATTTCCAAGACCAG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAG	BMS1(8072),LINC02623(28512)	MYC	.	ENSG00000136997	.	LH00995:25:23T55JLT4:1:1464:32672:12000,LH00995:25:23T55JLT4:1:2135:14551:28058,LH00995:25:23T55JLT4:1:2195:16088:20043,LH00995:25:23T55JLT4:2:1155:39970:14466,LH00995:25:23T55JLT4:2:1474:36289:21934,LH00995:25:23T55JLT4:2:2188:3977:18543,LH00995:25:23T55JLT4:2:2262:34468:2499,LH00995:25:23T55JLT4:3:1172:40568:24443,LH00995:25:23T55JLT4:3:1183:2901:2920,LH00995:25:23T55JLT4:3:2220:12957:26755,LH00995:25:23T55JLT4:3:2402:34145:16371,LH00995:25:23T55JLT4:4:1146:52137:6479,LH00995:25:23T55JLT4:4:1353:4212:29655,LH00995:25:23T55JLT4:4:2249:23159:6423,LH00995:25:23T55JLT4:4:2321:35334:16918,LH00995:25:23T55JLT4:6:1477:44524:18627,LH00995:25:23T55JLT4:6:2224:5773:10304,LH00995:25:23T55JLT4:6:2278:37421:8398,LH00995:25:23T55JLT4:8:2105:33748:28744,LH00995:25:23T55JLT4:1:2138:49160:19510,LH00995:25:23T55JLT4:1:2260:3273:29263,LH00995:25:23T55JLT4:1:2407:16598:3186,LH00995:25:23T55JLT4:3:1379:1623:10991,LH00995:25:23T55JLT4:5:1439:20287:17675,LH00995:25:23T55JLT4:7:1143:6550:24793,LH00995:25:23T55JLT4:7:1336:7286:27301,LH00995:25:23T55JLT4:8:1337:17973:7894,LH00995:25:23T55JLT4:8:1338:1793:23868,LH00995:25:23T55JLT4:8:2250:9106:24373,LH00995:25:23T55JLT4:8:2307:27058:3368,LH00995:25:23T55JLT4:8:2479:3014:1603,LH00995:25:23T55JLT4:8:2479:3023:1589,LH00995:25:23T55JLT4:4:1261:21015:3662,LH00995:25:23T55JLT4:4:1261:21031:3662,LH00995:25:23T55JLT4:4:1261:21039:3676,LH00995:25:23T55JLT4:7:2405:6048:16273	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	intergenic	CDS/splice-site	4	10	./+	+/+	.	14	.	ENST00000621592	translocation	0.13333333333333333	0.0001525669387443741	0.06674295013603886																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1--MYC	BMS1--MYC	BMS1--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr10	chr8	BMS1	MYC	42843009	127738248	chr10:42843009-chr8:127738248	+,+	Arriba	1	0	14		14	PASS		BMS1--MYC	BMS1--MYC	confidence:medium;duplicates(12),mismatches(2),multimappers(8)	medium	translocation	intergenic	CDS/splice-site	26	65535	12.0	2.0	0.0	8.0									4	10		duplicates(12),mismatches(2),multimappers(8)		FAIL		False	chr10:42843009	chr8:127738248	chr10:42843009-chr8:127738248	.	.	medium	26	65535	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(12),mismatches(2),multimappers(8)	TGCTTACTGCAACCTCCATCTCCTAGGCTCcAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCTACTACATCTGTCCAAAAGCTGCATTTCCAAGACCAG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAG	BMS1(8072),LINC02623(28512)	MYC	.	ENSG00000136997	.	LH00995:25:23T55JLT4:1:1464:32672:12000,LH00995:25:23T55JLT4:1:2135:14551:28058,LH00995:25:23T55JLT4:1:2195:16088:20043,LH00995:25:23T55JLT4:2:1155:39970:14466,LH00995:25:23T55JLT4:2:1474:36289:21934,LH00995:25:23T55JLT4:2:2188:3977:18543,LH00995:25:23T55JLT4:2:2262:34468:2499,LH00995:25:23T55JLT4:3:1172:40568:24443,LH00995:25:23T55JLT4:3:1183:2901:2920,LH00995:25:23T55JLT4:3:2220:12957:26755,LH00995:25:23T55JLT4:3:2402:34145:16371,LH00995:25:23T55JLT4:4:1146:52137:6479,LH00995:25:23T55JLT4:4:1353:4212:29655,LH00995:25:23T55JLT4:4:2249:23159:6423,LH00995:25:23T55JLT4:4:2321:35334:16918,LH00995:25:23T55JLT4:6:1477:44524:18627,LH00995:25:23T55JLT4:6:2224:5773:10304,LH00995:25:23T55JLT4:6:2278:37421:8398,LH00995:25:23T55JLT4:8:2105:33748:28744,LH00995:25:23T55JLT4:1:2138:49160:19510,LH00995:25:23T55JLT4:1:2260:3273:29263,LH00995:25:23T55JLT4:1:2407:16598:3186,LH00995:25:23T55JLT4:3:1379:1623:10991,LH00995:25:23T55JLT4:5:1439:20287:17675,LH00995:25:23T55JLT4:7:1143:6550:24793,LH00995:25:23T55JLT4:7:1336:7286:27301,LH00995:25:23T55JLT4:8:1337:17973:7894,LH00995:25:23T55JLT4:8:1338:1793:23868,LH00995:25:23T55JLT4:8:2250:9106:24373,LH00995:25:23T55JLT4:8:2307:27058:3368,LH00995:25:23T55JLT4:8:2479:3014:1603,LH00995:25:23T55JLT4:8:2479:3023:1589,LH00995:25:23T55JLT4:4:1261:21015:3662,LH00995:25:23T55JLT4:4:1261:21031:3662,LH00995:25:23T55JLT4:4:1261:21039:3676,LH00995:25:23T55JLT4:7:2405:6048:16273	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	intergenic	CDS/splice-site	4	10	./+	+/+	.	14	.	ENST00000621592	translocation	0.13333333333333333	0.0001525669387443741	0.06674295013603886																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1--MYC	BMS1--MYC	BMS1--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr10	chr8	BMS1	MYC	42843009	127738248	chr10:42843009-chr8:127738248	+,+	Arriba	1	0	19		19	PASS		BMS1--MYC	BMS1--MYC	confidence:medium;duplicates(7),mismatches(3),multimappers(5)	medium	translocation	intergenic	CDS/splice-site	27	65535	7.0	3.0	0.0	5.0									8	11		duplicates(7),mismatches(3),multimappers(5)		FAIL		False	chr10:42843009	chr8:127738248	chr10:42843009-chr8:127738248	.	.	medium	27	65535	downstream	upstream	0	confidence_below_min(medium<high)	duplicates(7),mismatches(3),multimappers(5)	TGCTTACTGCAACCTCCATCTCCTAGGCTCcAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCTACTACATCTGTCCAAAAGCTGCATTTCCAAGACCAG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACC	BMS1(8072),LINC02623(28512)	MYC	.	ENSG00000136997	.	LH00995:25:23T55JLT4:1:1173:38651:21150,LH00995:25:23T55JLT4:1:1461:38343:13191,LH00995:25:23T55JLT4:1:2253:40293:19482,LH00995:25:23T55JLT4:2:1133:46911:7628,LH00995:25:23T55JLT4:2:1263:4980:4223,LH00995:25:23T55JLT4:3:1203:44047:12308,LH00995:25:23T55JLT4:3:2337:11938:10668,LH00995:25:23T55JLT4:3:2436:50762:13205,LH00995:25:23T55JLT4:4:1431:49702:20141,LH00995:25:23T55JLT4:4:1432:12067:26951,LH00995:25:23T55JLT4:5:1371:16144:15769,LH00995:25:23T55JLT4:5:1410:37623:20603,LH00995:25:23T55JLT4:5:1410:44726:9758,LH00995:25:23T55JLT4:5:2181:13119:4895,LH00995:25:23T55JLT4:6:2278:14025:24569,LH00995:25:23T55JLT4:6:2492:24874:14970,LH00995:25:23T55JLT4:8:1358:47000:5036,LH00995:25:23T55JLT4:1:1202:10206:22439,LH00995:25:23T55JLT4:1:1427:8111:15727,LH00995:25:23T55JLT4:1:2259:52048:20869,LH00995:25:23T55JLT4:2:1407:2521:16077,LH00995:25:23T55JLT4:2:2234:33845:17675,LH00995:25:23T55JLT4:2:2464:21694:17086,LH00995:25:23T55JLT4:3:2139:5563:25830,LH00995:25:23T55JLT4:3:2293:39161:9702,LH00995:25:23T55JLT4:4:1138:43570:25998,LH00995:25:23T55JLT4:4:1207:49605:12098,LH00995:25:23T55JLT4:4:1222:25440:6787,LH00995:25:23T55JLT4:4:1428:36491:2892,LH00995:25:23T55JLT4:5:1162:47793:27175,LH00995:25:23T55JLT4:8:1122:48221:21528,LH00995:25:23T55JLT4:8:1139:42971:27735,LH00995:25:23T55JLT4:8:2229:18911:22831,LH00995:25:23T55JLT4:8:2449:26079:13135	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	intergenic	CDS/splice-site	8	11	./+	+/+	.	19	.	ENST00000621592	translocation	0.22857142857142856	0.0001678210722240869	0.11436962482182633																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1P8--NTRK3	NTRK3--BMS1P8	BMS1P8--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr16	NTRK3	BMS1P8	88126271	33702131	chr15:88126271-chr16:33702131	-,-	Arriba	1	0	3		3	PASS	out-of-frame	NTRK3--BMS1P8	BMS1P8--NTRK3	confidence:medium;duplicates(6)	medium	translocation	CDS/splice-site	exon/splice-site	1793	48	6.0	0.0	0.0	0.0									3	0	False	duplicates(6)		FAIL		False	chr15:88126271	chr16:33702131	chr15:88126271-chr16:33702131	.	.	medium	1793	48	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(6)	CTGTGACCCACAAACCAGAAGAAGACACTTTTGGG___GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG|AGGAGCTCTATGGTGACTTTGAAGACTTGGAAACAGGGGACGTGCACAAGGGAAAATCGGGC	NTRK3	BMS1P8	ENSG00000140538	ENSG00000260518	VTHKPEEDTFGVSIAVGLAAFACVLLVVLFVMINKYGRRSKFGMK|eelygdfedletgdvhkgks	LH00995:25:23T55JLT4:1:1387:35520:24779,LH00995:25:23T55JLT4:1:2303:1696:16582,LH00995:25:23T55JLT4:3:1469:8653:1785,LH00995:25:23T55JLT4:3:1469:8669:1785,LH00995:25:23T55JLT4:3:2212:20821:1813,LH00995:25:23T55JLT4:5:1404:50754:12910,LH00995:25:23T55JLT4:5:1440:51441:6143,LH00995:25:23T55JLT4:6:2204:29088:11761,LH00995:25:23T55JLT4:8:1177:40439:17520	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Leucine_rich_repeat_N-terminal_domain(100%)|	CDS/splice-site	exon/splice-site	3	0	-/-	-/-	.	3	ENST00000394480	ENST00000648463	translocation	0.0016703786191536749	0.0	0.0008351893095768374																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1P8--NTRK3	NTRK3--BMS1P8	BMS1P8--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr16	NTRK3	BMS1P8	88126271	33702131	chr15:88126271-chr16:33702131	-,-	Arriba	1	0	3		3	PASS	out-of-frame	NTRK3--BMS1P8	BMS1P8--NTRK3	confidence:medium;duplicates(6),mismatches(1)	medium	translocation	CDS/splice-site	exon/splice-site	1506	24	6.0	1.0	0.0	0.0									2	1	False	duplicates(6),mismatches(1)		FAIL		False	chr15:88126271	chr16:33702131	chr15:88126271-chr16:33702131	.	.	medium	1506	24	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(6),mismatches(1)	GACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGG___GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG|AGGAGCTCTATGGTGACTTTGAAGACTTGGAAACAGGGGACGTGCACAAGGGAAAATCGGGCCCCGATACTCAG	NTRK3	BMS1P8	ENSG00000140538	ENSG00000260518	DEVSPTPPITVTHKPEEDTFGVSIAVGLAAFACVLLVVLFVMINKYGRRSKFGMK|eelygdfedletgdvhkgksgpdt	LH00995:25:23T55JLT4:1:2136:11897:20631,LH00995:25:23T55JLT4:1:2246:46959:28478,LH00995:25:23T55JLT4:3:1455:10943:24218,LH00995:25:23T55JLT4:4:1265:3192:10402,LH00995:25:23T55JLT4:4:1414:48577:2275,LH00995:25:23T55JLT4:4:2381:44217:8455,LH00995:25:23T55JLT4:7:2155:42728:8707,LH00995:25:23T55JLT4:8:1334:47882:21248,LH00995:25:23T55JLT4:8:1401:32147:14760,LH00995:25:23T55JLT4:1:2409:41555:1799	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Leucine_rich_repeat_N-terminal_domain(100%)|	CDS/splice-site	exon/splice-site	2	1	-/-	-/-	.	3	ENST00000394480	ENST00000648463	translocation	0.001326259946949602	0.04	0.020663129973474803																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1P8--NTRK3	NTRK3--BMS1P8	BMS1P8--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr16	NTRK3	BMS1P8	88126271	33702131	chr15:88126271-chr16:33702131	-,-	Arriba	1	0	3		3	PASS	out-of-frame	NTRK3--BMS1P8	BMS1P8--NTRK3	confidence:medium;duplicates(6),mismatches(1)	medium	translocation	CDS/splice-site	exon/splice-site	1506	24	6.0	1.0	0.0	0.0									2	1	False	duplicates(6),mismatches(1)		FAIL		False	chr15:88126271	chr16:33702131	chr15:88126271-chr16:33702131	.	.	medium	1506	24	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(6),mismatches(1)	GACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGG___GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG|AGGAGCTCTATGGTGACTTTGAAGACTTGGAAACAGGGGACGTGCACAAGGGAAAATCGGGCCCCGATACTCAG	NTRK3	BMS1P8	ENSG00000140538	ENSG00000260518	DEVSPTPPITVTHKPEEDTFGVSIAVGLAAFACVLLVVLFVMINKYGRRSKFGMK|eelygdfedletgdvhkgksgpdt	LH00995:25:23T55JLT4:1:2136:11897:20631,LH00995:25:23T55JLT4:1:2246:46959:28478,LH00995:25:23T55JLT4:3:1455:10943:24218,LH00995:25:23T55JLT4:4:1265:3192:10402,LH00995:25:23T55JLT4:4:1414:48577:2275,LH00995:25:23T55JLT4:4:2381:44217:8455,LH00995:25:23T55JLT4:7:2155:42728:8707,LH00995:25:23T55JLT4:8:1334:47882:21248,LH00995:25:23T55JLT4:8:1401:32147:14760,LH00995:25:23T55JLT4:1:2409:41555:1799	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Leucine_rich_repeat_N-terminal_domain(100%)|	CDS/splice-site	exon/splice-site	2	1	-/-	-/-	.	3	ENST00000394480	ENST00000648463	translocation	0.001326259946949602	0.04	0.020663129973474803																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	BMS1P8--NTRK3	NTRK3--BMS1P8	BMS1P8--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr16	NTRK3	BMS1P8	88126271	33702131	chr15:88126271-chr16:33702131	-,-	Arriba	1	0	3		3	PASS	out-of-frame	NTRK3--BMS1P8	BMS1P8--NTRK3	confidence:medium;duplicates(6)	medium	translocation	CDS/splice-site	exon/splice-site	1793	48	6.0	0.0	0.0	0.0									3	0	False	duplicates(6)		FAIL		False	chr15:88126271	chr16:33702131	chr15:88126271-chr16:33702131	.	.	medium	1793	48	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(6)	CTGTGACCCACAAACCAGAAGAAGACACTTTTGGG___GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG|AGGAGCTCTATGGTGACTTTGAAGACTTGGAAACAGGGGACGTGCACAAGGGAAAATCGGGC	NTRK3	BMS1P8	ENSG00000140538	ENSG00000260518	VTHKPEEDTFGVSIAVGLAAFACVLLVVLFVMINKYGRRSKFGMK|eelygdfedletgdvhkgks	LH00995:25:23T55JLT4:1:1387:35520:24779,LH00995:25:23T55JLT4:1:2303:1696:16582,LH00995:25:23T55JLT4:3:1469:8653:1785,LH00995:25:23T55JLT4:3:1469:8669:1785,LH00995:25:23T55JLT4:3:2212:20821:1813,LH00995:25:23T55JLT4:5:1404:50754:12910,LH00995:25:23T55JLT4:5:1440:51441:6143,LH00995:25:23T55JLT4:6:2204:29088:11761,LH00995:25:23T55JLT4:8:1177:40439:17520	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Leucine_rich_repeat_N-terminal_domain(100%)|	CDS/splice-site	exon/splice-site	3	0	-/-	-/-	.	3	ENST00000394480	ENST00000648463	translocation	0.0016703786191536749	0.0	0.0008351893095768374																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	Arriba	1	0	25		25	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:medium;duplicates(14)	medium	inversion	CDS/splice-site	CDS/splice-site	4297	3918	14.0	0.0	0.0	0.0									11	14	False	duplicates(14)		FAIL		False	chr15:90540137	chr15:88184299	chr15:90540137-chr15:88184299	.	.	medium	4297	3918	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(14)	GTTCAATTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGGAGCAaTGCGTCAGAGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCC	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	VQFQKLQQLRLTQYHGGSLPNVSQLRSnASEFQ|threlaqsshaqrrghgalhrtskadhqelrtsehsaqslcqep	LH00995:25:23T55JLT4:1:1143:17496:25283,LH00995:25:23T55JLT4:1:2406:1316:25592,LH00995:25:23T55JLT4:2:1135:9454:18922,LH00995:25:23T55JLT4:2:1446:14607:8090,LH00995:25:23T55JLT4:2:2126:43238:22145,LH00995:25:23T55JLT4:2:2259:21670:22789,LH00995:25:23T55JLT4:2:2403:13564:18669,LH00995:25:23T55JLT4:3:2216:1356:15012,LH00995:25:23T55JLT4:3:2366:26273:26110,LH00995:25:23T55JLT4:3:2384:29550:25115,LH00995:25:23T55JLT4:3:2395:10562:16442,LH00995:25:23T55JLT4:4:1215:25537:18782,LH00995:25:23T55JLT4:4:1298:27543:21444,LH00995:25:23T55JLT4:5:1101:50915:23392,LH00995:25:23T55JLT4:5:2191:21516:4419,LH00995:25:23T55JLT4:5:2237:13580:8132,LH00995:25:23T55JLT4:5:2365:39670:1392,LH00995:25:23T55JLT4:5:2409:32616:5568,LH00995:25:23T55JLT4:6:1145:51029:27735,LH00995:25:23T55JLT4:6:1398:33611:3452,LH00995:25:23T55JLT4:6:2326:11355:21766,LH00995:25:23T55JLT4:8:1171:2327:21542,LH00995:25:23T55JLT4:8:1460:41620:25732,LH00995:25:23T55JLT4:8:2275:18693:20435,LH00995:25:23T55JLT4:8:2487:7618:9127,LH00995:25:23T55JLT4:1:1407:2610:27077,LH00995:25:23T55JLT4:1:2487:10198:10767,LH00995:25:23T55JLT4:2:2117:42372:26811,LH00995:25:23T55JLT4:2:2178:29525:10192,LH00995:25:23T55JLT4:2:2238:35900:6297,LH00995:25:23T55JLT4:3:2167:46328:20603,LH00995:25:23T55JLT4:3:2302:49273:25507,LH00995:25:23T55JLT4:3:2376:15522:7824,LH00995:25:23T55JLT4:4:1212:31200:10795,LH00995:25:23T55JLT4:4:1428:27252:9814,LH00995:25:23T55JLT4:6:1451:5814:4461,LH00995:25:23T55JLT4:8:1330:12148:2233,LH00995:25:23T55JLT4:8:2229:43537:4923,LH00995:25:23T55JLT4:8:2291:23450:2331	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(90%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	11	14	+/+	-/-	.	25	ENST00000268184	ENST00000394480	inversion	0.00255338904363974	0.003560528992878942	0.003056959018259341																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90540137	88147403	chr15:90540137-chr15:88147403	+,-	Arriba	1	0	1		1	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4297	1549													0	1	False			FAIL		False	chr15:90540137	chr15:88147403	chr15:90540137-chr15:88147403	.	.	low	4297	1549	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGGAGCAaTGCGTCAGAGTTTCAG|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGTAAGTTTGGTTTTGAAGACTGTCCAGGTACTGAAGTGCTGGTAATGGGTGGATGGGGAGGAGTGTCAAGCAGTGGAACCACCTGAAGGCTGAGC	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	LQQLRLTQYHGGSLPNVSQLRSnASEFQ|kpvk*	LH00995:25:23T55JLT4:2:2178:4082:22341	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(90%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000268184	ENST00000394480	inversion	0.0	0.0006451612903225806	0.0003225806451612903																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90530203	88184299	chr15:90530203-chr15:88184299	+,-	Arriba	1	0	1		1	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	CDS/splice-site	3764	3918	3.0	0.0	0.0	0.0									0	1	False	duplicates(3)		FAIL		False	chr15:90530203	chr15:88184299	chr15:90530203-chr15:88184299	.	.	low	3764	3918	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	CGAGGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCTCACCCTGTCGCGG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTG	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	EETRAFEQLMTDLTLSR|threlaqsshaqrrghgalhrtska	LH00995:25:23T55JLT4:3:2419:23968:12560,LH00995:25:23T55JLT4:5:2282:26629:28744,LH00995:25:23T55JLT4:6:1351:13402:3424,LH00995:25:23T55JLT4:6:2228:1777:13023	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(45%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000268184	ENST00000394480	inversion	0.0	0.00025516713447307985	0.00012758356723653993																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	Arriba	1	0	11		11	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:medium;duplicates(7)	medium	inversion	CDS/splice-site	CDS/splice-site	3339	1846	7.0	0.0	0.0	0.0									8	3	False	duplicates(7)		FAIL		False	chr15:90540137	chr15:88184299	chr15:90540137-chr15:88184299	.	.	medium	3339	1846	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(7)	CGCAGAGACAGGCCGAGGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCTCACCCTGTCGCGG___GTTCAATTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGGAGCAaTGCGTCAGAGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGA	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	QRQAEETRAFEQLMTDLTLSRVQFQKLQQLRLTQYHGGSLPNVSQLRSnASEFQ|threlaqsshaqrrghgalhrtskadhqelrts	LH00995:25:23T55JLT4:1:2209:51417:14620,LH00995:25:23T55JLT4:2:1106:2230:3522,LH00995:25:23T55JLT4:2:1211:24145:9421,LH00995:25:23T55JLT4:2:2372:47388:2261,LH00995:25:23T55JLT4:1:2257:42202:23350,LH00995:25:23T55JLT4:2:1368:33239:29067,LH00995:25:23T55JLT4:2:1368:33255:29067,LH00995:25:23T55JLT4:2:2267:45188:3494,LH00995:25:23T55JLT4:3:2485:45972:7656,LH00995:25:23T55JLT4:4:2119:50527:15180,LH00995:25:23T55JLT4:4:2452:29088:19889,LH00995:25:23T55JLT4:5:1197:9163:4881,LH00995:25:23T55JLT4:5:2314:32292:8202,LH00995:25:23T55JLT4:5:2333:1817:8413,LH00995:25:23T55JLT4:6:2408:12180:5988,LH00995:25:23T55JLT4:7:1453:21257:15601,LH00995:25:23T55JLT4:7:2271:46094:28520,LH00995:25:23T55JLT4:8:1380:33870:9814	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(90%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	8	3	+/+	-/-	.	11	ENST00000268184	ENST00000394480	inversion	0.0023902001792650133	0.0016224986479177934	0.0020063494135914035																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	STAR-Fusion	1	0	27	0.0915	27	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8295	False	False	False	GT	AG	27		False																																										1	ENST00000268184.11	1-231	ENST00000626019.2	249-2595	0.0915	PASS	atggccgcctcgccgggctcgggcagcgccaacccgcggaagttcagtgagaagatcgcgctgcacacgcagagacaggccgaggagacgcgggccttcgagcagctcatgaccgacctcaccctgtcgcgggttcaatttcagaagcttcagcaactgcgccttacacagtaccatggaggatccttaccaaatgtgagccagctgcggagcagtgcgtcagagtttcagACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|+|[0]90530072-90530203[2]|[0]90540039-90540137[2]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAASPGSGSANPRKFSEKIALHTQRQAEETRAFEQLMTDLTLSRVQFQKLQQLRLTQYHGGSLPNVSQLRSSASEFQTHRELAQSSHAQRRGHGALHRTSKADHQELRTSEHSAQSLCQEPPFALYKPVK*PAHHTLVAALPDAESSGIAVGAELFQLQL*HPLDAALAGAGGGQAQQPEPLLHQR*WLPASSLPHEHQSV*PS*DQREPRQPDRTRG*QRCYHLQWLWITPS*CGLDSHWAAVHQHSPDQSELDQCSCHQLDAGECDE*GQWLHPDVHCRERGGHEQCQCCPHCLLSPTCGEPGGA*AAPGALHRVCGAWQPPTNAALAAQWAASAGVQDHPCGILPRGRDFRGLPALQQAHPLQQWQLYPHCQKPTGHSQPDHQWPLPQGALSREHG*LYLV*RSESHTSYHCDPQTRRRHFWGIHSSWTCCFCLCPVGGSLRHDQQIWSTVQIWNEGSRGCHQW*GGLSQPTAPHQPRHHHALVTGCRARHCGHWHDSHPCH*EPPVLPSGTQLPQAGHVCAAH*EERHRAEARTG*GSLWKGLPGRVLQPQPDQGQDACGCEGPEGSHPGCPEGFPEGGRAAHQPAA*AHCQVLWSVRRWGPPHHGL*IHEAWRPE*VPQGPWARCNDPCGWTATPGQG*AGALPNAPHCQSDRLGYGVPGLPALCAPRPGHQELPGWSESASEDWGLRHVQRCLQHGLLQGRAMPEGPVQCGVAAAEASSNGSFHTL*SIWK*FLYMV*GGRTHHAPHSLDAS*KHHVPEVHYRE*CMELRGDPLGDLHLWKAAMVPTLKHGGH*VHYPRSCFGAAPSLPQRGVRCHAGVLAEGTTAAVEHQGDLQNPPCFGEGHPNLPGHSWL	CRTC3--NTRK3	27	LH00995:25:23T55JLT4:1:1143:17496:25283,LH00995:25:23T55JLT4:1:1407:2610:27077,LH00995:25:23T55JLT4:1:2406:1316:25592,LH00995:25:23T55JLT4:1:2487:10198:10767,LH00995:25:23T55JLT4:2:1135:9454:18922,LH00995:25:23T55JLT4:2:1446:14607:8090,LH00995:25:23T55JLT4:2:2117:42372:26811,LH00995:25:23T55JLT4:2:2178:29525:10192,LH00995:25:23T55JLT4:2:2259:21670:22789,LH00995:25:23T55JLT4:2:2403:13564:18669,LH00995:25:23T55JLT4:3:2167:46328:20603,LH00995:25:23T55JLT4:3:2216:1356:15012,LH00995:25:23T55JLT4:3:2302:49273:25507,LH00995:25:23T55JLT4:3:2366:26273:26110,LH00995:25:23T55JLT4:3:2376:15522:7824,LH00995:25:23T55JLT4:3:2395:10562:16442,LH00995:25:23T55JLT4:4:1212:31200:10795,LH00995:25:23T55JLT4:4:1215:25537:18782,LH00995:25:23T55JLT4:4:1428:27252:9814,LH00995:25:23T55JLT4:5:2237:13580:8132,LH00995:25:23T55JLT4:5:2409:32616:5568,LH00995:25:23T55JLT4:6:1451:5814:4461,LH00995:25:23T55JLT4:8:1330:12148:2233,LH00995:25:23T55JLT4:8:1460:41620:25732,LH00995:25:23T55JLT4:8:2229:43537:4923,LH00995:25:23T55JLT4:8:2275:18693:20435,LH00995:25:23T55JLT4:8:2487:7618:9127	YES_LDAS	GT	1.9656	chr15:90540137:+	CRTC3^ENSG00000140577.16	TORC_N|11-64|1.2e-21^TORC_M|51-70|0.19^TORC_M-PARTIAL|159-231~|1.3e-66	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"		False	chr15:90540137-chr15:88184299	27.0	0.0		27	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	STAR-Fusion	1	0	11	0.0539	11	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8295	False	False	False	GT	AG	11		False																																										1	ENST00000268184.11	1-231	ENST00000626019.2	249-2595	0.0539	PASS	atggccgcctcgccgggctcgggcagcgccaacccgcggaagttcagtgagaagatcgcgctgcacacgcagagacaggccgaggagacgcgggccttcgagcagctcatgaccgacctcaccctgtcgcgggttcaatttcagaagcttcagcaactgcgccttacacagtaccatggaggatccttaccaaatgtgagccagctgcggagcagtgcgtcagagtttcagACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|+|[0]90530072-90530203[2]|[0]90540039-90540137[2]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAASPGSGSANPRKFSEKIALHTQRQAEETRAFEQLMTDLTLSRVQFQKLQQLRLTQYHGGSLPNVSQLRSSASEFQTHRELAQSSHAQRRGHGALHRTSKADHQELRTSEHSAQSLCQEPPFALYKPVK*PAHHTLVAALPDAESSGIAVGAELFQLQL*HPLDAALAGAGGGQAQQPEPLLHQR*WLPASSLPHEHQSV*PS*DQREPRQPDRTRG*QRCYHLQWLWITPS*CGLDSHWAAVHQHSPDQSELDQCSCHQLDAGECDE*GQWLHPDVHCRERGGHEQCQCCPHCLLSPTCGEPGGA*AAPGALHRVCGAWQPPTNAALAAQWAASAGVQDHPCGILPRGRDFRGLPALQQAHPLQQWQLYPHCQKPTGHSQPDHQWPLPQGALSREHG*LYLV*RSESHTSYHCDPQTRRRHFWGIHSSWTCCFCLCPVGGSLRHDQQIWSTVQIWNEGSRGCHQW*GGLSQPTAPHQPRHHHALVTGCRARHCGHWHDSHPCH*EPPVLPSGTQLPQAGHVCAAH*EERHRAEARTG*GSLWKGLPGRVLQPQPDQGQDACGCEGPEGSHPGCPEGFPEGGRAAHQPAA*AHCQVLWSVRRWGPPHHGL*IHEAWRPE*VPQGPWARCNDPCGWTATPGQG*AGALPNAPHCQSDRLGYGVPGLPALCAPRPGHQELPGWSESASEDWGLRHVQRCLQHGLLQGRAMPEGPVQCGVAAAEASSNGSFHTL*SIWK*FLYMV*GGRTHHAPHSLDAS*KHHVPEVHYRE*CMELRGDPLGDLHLWKAAMVPTLKHGGH*VHYPRSCFGAAPSLPQRGVRCHAGVLAEGTTAAVEHQGDLQNPPCFGEGHPNLPGHSWL	CRTC3--NTRK3	11	LH00995:25:23T55JLT4:1:2209:51417:14620,LH00995:25:23T55JLT4:1:2257:42202:23350,LH00995:25:23T55JLT4:2:1106:2230:3522,LH00995:25:23T55JLT4:2:2267:45188:3494,LH00995:25:23T55JLT4:2:2372:47388:2261,LH00995:25:23T55JLT4:4:2119:50527:15180,LH00995:25:23T55JLT4:5:1197:9163:4881,LH00995:25:23T55JLT4:5:2333:1817:8413,LH00995:25:23T55JLT4:6:2408:12180:5988,LH00995:25:23T55JLT4:7:1453:21257:15601,LH00995:25:23T55JLT4:7:2271:46094:28520	YES_LDAS	GT	1.9656	chr15:90540137:+	CRTC3^ENSG00000140577.16	TORC_N|11-64|1.2e-21^TORC_M|51-70|0.19^TORC_M-PARTIAL|159-231~|1.3e-66	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"		False	chr15:90540137-chr15:88184299	11.0	0.0		11	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	Arriba	1	0	11		11	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:medium;duplicates(7)	medium	inversion	CDS/splice-site	CDS/splice-site	3339	1846	7.0	0.0	0.0	0.0									8	3	False	duplicates(7)		FAIL		False	chr15:90540137	chr15:88184299	chr15:90540137-chr15:88184299	.	.	medium	3339	1846	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(7)	CGCAGAGACAGGCCGAGGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCTCACCCTGTCGCGG___GTTCAATTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGGAGCAaTGCGTCAGAGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGA	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	QRQAEETRAFEQLMTDLTLSRVQFQKLQQLRLTQYHGGSLPNVSQLRSnASEFQ|threlaqsshaqrrghgalhrtskadhqelrts	LH00995:25:23T55JLT4:1:2209:51417:14620,LH00995:25:23T55JLT4:2:1106:2230:3522,LH00995:25:23T55JLT4:2:1211:24145:9421,LH00995:25:23T55JLT4:2:2372:47388:2261,LH00995:25:23T55JLT4:1:2257:42202:23350,LH00995:25:23T55JLT4:2:1368:33239:29067,LH00995:25:23T55JLT4:2:1368:33255:29067,LH00995:25:23T55JLT4:2:2267:45188:3494,LH00995:25:23T55JLT4:3:2485:45972:7656,LH00995:25:23T55JLT4:4:2119:50527:15180,LH00995:25:23T55JLT4:4:2452:29088:19889,LH00995:25:23T55JLT4:5:1197:9163:4881,LH00995:25:23T55JLT4:5:2314:32292:8202,LH00995:25:23T55JLT4:5:2333:1817:8413,LH00995:25:23T55JLT4:6:2408:12180:5988,LH00995:25:23T55JLT4:7:1453:21257:15601,LH00995:25:23T55JLT4:7:2271:46094:28520,LH00995:25:23T55JLT4:8:1380:33870:9814	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(90%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	8	3	+/+	-/-	.	11	ENST00000268184	ENST00000394480	inversion	0.0023902001792650133	0.0016224986479177934	0.0020063494135914035																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	Arriba	1	0	25		25	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:medium;duplicates(14)	medium	inversion	CDS/splice-site	CDS/splice-site	4297	3918	14.0	0.0	0.0	0.0									11	14	False	duplicates(14)		FAIL		False	chr15:90540137	chr15:88184299	chr15:90540137-chr15:88184299	.	.	medium	4297	3918	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(14)	GTTCAATTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGGAGCAaTGCGTCAGAGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCC	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	VQFQKLQQLRLTQYHGGSLPNVSQLRSnASEFQ|threlaqsshaqrrghgalhrtskadhqelrtsehsaqslcqep	LH00995:25:23T55JLT4:1:1143:17496:25283,LH00995:25:23T55JLT4:1:2406:1316:25592,LH00995:25:23T55JLT4:2:1135:9454:18922,LH00995:25:23T55JLT4:2:1446:14607:8090,LH00995:25:23T55JLT4:2:2126:43238:22145,LH00995:25:23T55JLT4:2:2259:21670:22789,LH00995:25:23T55JLT4:2:2403:13564:18669,LH00995:25:23T55JLT4:3:2216:1356:15012,LH00995:25:23T55JLT4:3:2366:26273:26110,LH00995:25:23T55JLT4:3:2384:29550:25115,LH00995:25:23T55JLT4:3:2395:10562:16442,LH00995:25:23T55JLT4:4:1215:25537:18782,LH00995:25:23T55JLT4:4:1298:27543:21444,LH00995:25:23T55JLT4:5:1101:50915:23392,LH00995:25:23T55JLT4:5:2191:21516:4419,LH00995:25:23T55JLT4:5:2237:13580:8132,LH00995:25:23T55JLT4:5:2365:39670:1392,LH00995:25:23T55JLT4:5:2409:32616:5568,LH00995:25:23T55JLT4:6:1145:51029:27735,LH00995:25:23T55JLT4:6:1398:33611:3452,LH00995:25:23T55JLT4:6:2326:11355:21766,LH00995:25:23T55JLT4:8:1171:2327:21542,LH00995:25:23T55JLT4:8:1460:41620:25732,LH00995:25:23T55JLT4:8:2275:18693:20435,LH00995:25:23T55JLT4:8:2487:7618:9127,LH00995:25:23T55JLT4:1:1407:2610:27077,LH00995:25:23T55JLT4:1:2487:10198:10767,LH00995:25:23T55JLT4:2:2117:42372:26811,LH00995:25:23T55JLT4:2:2178:29525:10192,LH00995:25:23T55JLT4:2:2238:35900:6297,LH00995:25:23T55JLT4:3:2167:46328:20603,LH00995:25:23T55JLT4:3:2302:49273:25507,LH00995:25:23T55JLT4:3:2376:15522:7824,LH00995:25:23T55JLT4:4:1212:31200:10795,LH00995:25:23T55JLT4:4:1428:27252:9814,LH00995:25:23T55JLT4:6:1451:5814:4461,LH00995:25:23T55JLT4:8:1330:12148:2233,LH00995:25:23T55JLT4:8:2229:43537:4923,LH00995:25:23T55JLT4:8:2291:23450:2331	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(90%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	11	14	+/+	-/-	.	25	ENST00000268184	ENST00000394480	inversion	0.00255338904363974	0.003560528992878942	0.003056959018259341																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90540137	88147403	chr15:90540137-chr15:88147403	+,-	Arriba	1	0	1		1	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4297	1549													0	1	False			FAIL		False	chr15:90540137	chr15:88147403	chr15:90540137-chr15:88147403	.	.	low	4297	1549	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGGAGCAaTGCGTCAGAGTTTCAG|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGTAAGTTTGGTTTTGAAGACTGTCCAGGTACTGAAGTGCTGGTAATGGGTGGATGGGGAGGAGTGTCAAGCAGTGGAACCACCTGAAGGCTGAGC	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	LQQLRLTQYHGGSLPNVSQLRSnASEFQ|kpvk*	LH00995:25:23T55JLT4:2:2178:4082:22341	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(90%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000268184	ENST00000394480	inversion	0.0	0.0006451612903225806	0.0003225806451612903																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90530203	88184299	chr15:90530203-chr15:88184299	+,-	Arriba	1	0	1		1	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	confidence:low;duplicates(3)	low	inversion	CDS/splice-site	CDS/splice-site	3764	3918	3.0	0.0	0.0	0.0									0	1	False	duplicates(3)		FAIL		False	chr15:90530203	chr15:88184299	chr15:90530203-chr15:88184299	.	.	low	3764	3918	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(3)	CGAGGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCTCACCCTGTCGCGG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTG	CRTC3	NTRK3	ENSG00000140577	ENSG00000140538	EETRAFEQLMTDLTLSR|threlaqsshaqrrghgalhrtska	LH00995:25:23T55JLT4:3:2419:23968:12560,LH00995:25:23T55JLT4:5:2282:26629:28744,LH00995:25:23T55JLT4:6:1351:13402:3424,LH00995:25:23T55JLT4:6:2228:1777:13023	out-of-frame	Transducer_of_regulated_CREB_activity__N_terminus(45%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000268184	ENST00000394480	inversion	0.0	0.00025516713447307985	0.00012758356723653993																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	STAR-Fusion	1	0	11	0.0539	11	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8295	False	False	False	GT	AG	11		False																																										1	ENST00000268184.11	1-231	ENST00000626019.2	249-2595	0.0539	PASS	atggccgcctcgccgggctcgggcagcgccaacccgcggaagttcagtgagaagatcgcgctgcacacgcagagacaggccgaggagacgcgggccttcgagcagctcatgaccgacctcaccctgtcgcgggttcaatttcagaagcttcagcaactgcgccttacacagtaccatggaggatccttaccaaatgtgagccagctgcggagcagtgcgtcagagtttcagACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|+|[0]90530072-90530203[2]|[0]90540039-90540137[2]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAASPGSGSANPRKFSEKIALHTQRQAEETRAFEQLMTDLTLSRVQFQKLQQLRLTQYHGGSLPNVSQLRSSASEFQTHRELAQSSHAQRRGHGALHRTSKADHQELRTSEHSAQSLCQEPPFALYKPVK*PAHHTLVAALPDAESSGIAVGAELFQLQL*HPLDAALAGAGGGQAQQPEPLLHQR*WLPASSLPHEHQSV*PS*DQREPRQPDRTRG*QRCYHLQWLWITPS*CGLDSHWAAVHQHSPDQSELDQCSCHQLDAGECDE*GQWLHPDVHCRERGGHEQCQCCPHCLLSPTCGEPGGA*AAPGALHRVCGAWQPPTNAALAAQWAASAGVQDHPCGILPRGRDFRGLPALQQAHPLQQWQLYPHCQKPTGHSQPDHQWPLPQGALSREHG*LYLV*RSESHTSYHCDPQTRRRHFWGIHSSWTCCFCLCPVGGSLRHDQQIWSTVQIWNEGSRGCHQW*GGLSQPTAPHQPRHHHALVTGCRARHCGHWHDSHPCH*EPPVLPSGTQLPQAGHVCAAH*EERHRAEARTG*GSLWKGLPGRVLQPQPDQGQDACGCEGPEGSHPGCPEGFPEGGRAAHQPAA*AHCQVLWSVRRWGPPHHGL*IHEAWRPE*VPQGPWARCNDPCGWTATPGQG*AGALPNAPHCQSDRLGYGVPGLPALCAPRPGHQELPGWSESASEDWGLRHVQRCLQHGLLQGRAMPEGPVQCGVAAAEASSNGSFHTL*SIWK*FLYMV*GGRTHHAPHSLDAS*KHHVPEVHYRE*CMELRGDPLGDLHLWKAAMVPTLKHGGH*VHYPRSCFGAAPSLPQRGVRCHAGVLAEGTTAAVEHQGDLQNPPCFGEGHPNLPGHSWL	CRTC3--NTRK3	11	LH00995:25:23T55JLT4:1:2209:51417:14620,LH00995:25:23T55JLT4:1:2257:42202:23350,LH00995:25:23T55JLT4:2:1106:2230:3522,LH00995:25:23T55JLT4:2:2267:45188:3494,LH00995:25:23T55JLT4:2:2372:47388:2261,LH00995:25:23T55JLT4:4:2119:50527:15180,LH00995:25:23T55JLT4:5:1197:9163:4881,LH00995:25:23T55JLT4:5:2333:1817:8413,LH00995:25:23T55JLT4:6:2408:12180:5988,LH00995:25:23T55JLT4:7:1453:21257:15601,LH00995:25:23T55JLT4:7:2271:46094:28520	YES_LDAS	GT	1.9656	chr15:90540137:+	CRTC3^ENSG00000140577.16	TORC_N|11-64|1.2e-21^TORC_M|51-70|0.19^TORC_M-PARTIAL|159-231~|1.3e-66	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"		False	chr15:90540137-chr15:88184299	11.0	0.0		11	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	CRTC3--NTRK3	CRTC3--NTRK3	CRTC3--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	CRTC3	NTRK3	90540137	88184299	chr15:90540137-chr15:88184299	+,-	STAR-Fusion	1	0	27	0.0915	27	PASS	out-of-frame	CRTC3--NTRK3	CRTC3--NTRK3	"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8295	False	False	False	GT	AG	27		False																																										1	ENST00000268184.11	1-231	ENST00000626019.2	249-2595	0.0915	PASS	atggccgcctcgccgggctcgggcagcgccaacccgcggaagttcagtgagaagatcgcgctgcacacgcagagacaggccgaggagacgcgggccttcgagcagctcatgaccgacctcaccctgtcgcgggttcaatttcagaagcttcagcaactgcgccttacacagtaccatggaggatccttaccaaatgtgagccagctgcggagcagtgcgtcagagtttcagACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|+|[0]90530072-90530203[2]|[0]90540039-90540137[2]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAASPGSGSANPRKFSEKIALHTQRQAEETRAFEQLMTDLTLSRVQFQKLQQLRLTQYHGGSLPNVSQLRSSASEFQTHRELAQSSHAQRRGHGALHRTSKADHQELRTSEHSAQSLCQEPPFALYKPVK*PAHHTLVAALPDAESSGIAVGAELFQLQL*HPLDAALAGAGGGQAQQPEPLLHQR*WLPASSLPHEHQSV*PS*DQREPRQPDRTRG*QRCYHLQWLWITPS*CGLDSHWAAVHQHSPDQSELDQCSCHQLDAGECDE*GQWLHPDVHCRERGGHEQCQCCPHCLLSPTCGEPGGA*AAPGALHRVCGAWQPPTNAALAAQWAASAGVQDHPCGILPRGRDFRGLPALQQAHPLQQWQLYPHCQKPTGHSQPDHQWPLPQGALSREHG*LYLV*RSESHTSYHCDPQTRRRHFWGIHSSWTCCFCLCPVGGSLRHDQQIWSTVQIWNEGSRGCHQW*GGLSQPTAPHQPRHHHALVTGCRARHCGHWHDSHPCH*EPPVLPSGTQLPQAGHVCAAH*EERHRAEARTG*GSLWKGLPGRVLQPQPDQGQDACGCEGPEGSHPGCPEGFPEGGRAAHQPAA*AHCQVLWSVRRWGPPHHGL*IHEAWRPE*VPQGPWARCNDPCGWTATPGQG*AGALPNAPHCQSDRLGYGVPGLPALCAPRPGHQELPGWSESASEDWGLRHVQRCLQHGLLQGRAMPEGPVQCGVAAAEASSNGSFHTL*SIWK*FLYMV*GGRTHHAPHSLDAS*KHHVPEVHYRE*CMELRGDPLGDLHLWKAAMVPTLKHGGH*VHYPRSCFGAAPSLPQRGVRCHAGVLAEGTTAAVEHQGDLQNPPCFGEGHPNLPGHSWL	CRTC3--NTRK3	27	LH00995:25:23T55JLT4:1:1143:17496:25283,LH00995:25:23T55JLT4:1:1407:2610:27077,LH00995:25:23T55JLT4:1:2406:1316:25592,LH00995:25:23T55JLT4:1:2487:10198:10767,LH00995:25:23T55JLT4:2:1135:9454:18922,LH00995:25:23T55JLT4:2:1446:14607:8090,LH00995:25:23T55JLT4:2:2117:42372:26811,LH00995:25:23T55JLT4:2:2178:29525:10192,LH00995:25:23T55JLT4:2:2259:21670:22789,LH00995:25:23T55JLT4:2:2403:13564:18669,LH00995:25:23T55JLT4:3:2167:46328:20603,LH00995:25:23T55JLT4:3:2216:1356:15012,LH00995:25:23T55JLT4:3:2302:49273:25507,LH00995:25:23T55JLT4:3:2366:26273:26110,LH00995:25:23T55JLT4:3:2376:15522:7824,LH00995:25:23T55JLT4:3:2395:10562:16442,LH00995:25:23T55JLT4:4:1212:31200:10795,LH00995:25:23T55JLT4:4:1215:25537:18782,LH00995:25:23T55JLT4:4:1428:27252:9814,LH00995:25:23T55JLT4:5:2237:13580:8132,LH00995:25:23T55JLT4:5:2409:32616:5568,LH00995:25:23T55JLT4:6:1451:5814:4461,LH00995:25:23T55JLT4:8:1330:12148:2233,LH00995:25:23T55JLT4:8:1460:41620:25732,LH00995:25:23T55JLT4:8:2229:43537:4923,LH00995:25:23T55JLT4:8:2275:18693:20435,LH00995:25:23T55JLT4:8:2487:7618:9127	YES_LDAS	GT	1.9656	chr15:90540137:+	CRTC3^ENSG00000140577.16	TORC_N|11-64|1.2e-21^TORC_M|51-70|0.19^TORC_M-PARTIAL|159-231~|1.3e-66	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:2.27Mb]""]"		False	chr15:90540137-chr15:88184299	27.0	0.0		27	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	Arriba	1	0	44		44	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	confidence:medium;duplicates(39)	medium	deletion	CDS/splice-site	CDS/splice-site	37181	3918	39.0	0.0	0.0	0.0									3	41	False	duplicates(39)		FAIL		False	chr15:90102276	chr15:88184299	chr15:90102276-chr15:88184299	.	.	medium	37181	3918	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(39)	CTCTGCAGAGCCTCAGGCTCGCGGCCGGCCTGGGCGCCGGCGGCCCTGACAGCCCCCACCTCGCAAGAGCAGCCGCGGCGCCACT|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGA	IDH2	NTRK3	ENSG00000182054	ENSG00000140538	LCRASGSRPAWAPAALTAPTSQEQPRRH|yt*	LH00995:25:23T55JLT4:1:1123:6776:3382,LH00995:25:23T55JLT4:1:1180:37939:9940,LH00995:25:23T55JLT4:1:1278:25197:25367,LH00995:25:23T55JLT4:1:1330:13912:13751,LH00995:25:23T55JLT4:1:1396:32462:23770,LH00995:25:23T55JLT4:1:1397:48941:19524,LH00995:25:23T55JLT4:1:1451:36734:4125,LH00995:25:23T55JLT4:1:1464:27608:1771,LH00995:25:23T55JLT4:1:2113:8831:28296,LH00995:25:23T55JLT4:1:2115:18046:6955,LH00995:25:23T55JLT4:1:2329:7585:24989,LH00995:25:23T55JLT4:1:2374:15295:17633,LH00995:25:23T55JLT4:1:2446:21128:28912,LH00995:25:23T55JLT4:1:2473:11290:18880,LH00995:25:23T55JLT4:2:1229:24065:3760,LH00995:25:23T55JLT4:2:1267:15238:28997,LH00995:25:23T55JLT4:2:1310:5166:20827,LH00995:25:23T55JLT4:2:1394:40034:28478,LH00995:25:23T55JLT4:2:1437:27932:1378,LH00995:25:23T55JLT4:2:1488:7440:10052,LH00995:25:23T55JLT4:2:2219:2569:25606,LH00995:25:23T55JLT4:2:2261:15821:23952,LH00995:25:23T55JLT4:2:2450:40479:25774,LH00995:25:23T55JLT4:3:1189:48885:13037,LH00995:25:23T55JLT4:3:1265:19607:20645,LH00995:25:23T55JLT4:3:1287:42809:4083,LH00995:25:23T55JLT4:3:1310:30836:19524,LH00995:25:23T55JLT4:3:1482:3354:29347,LH00995:25:23T55JLT4:3:2117:24599:9590,LH00995:25:23T55JLT4:3:2133:18992:18403,LH00995:25:23T55JLT4:3:2168:18377:27651,LH00995:25:23T55JLT4:3:2177:11970:8651,LH00995:25:23T55JLT4:3:2333:42680:27511,LH00995:25:23T55JLT4:4:1229:11946:6563,LH00995:25:23T55JLT4:4:1311:46603:25087,LH00995:25:23T55JLT4:4:1412:50228:29459,LH00995:25:23T55JLT4:4:1436:40973:12140,LH00995:25:23T55JLT4:5:1143:50025:26474,LH00995:25:23T55JLT4:5:1164:39444:29193,LH00995:25:23T55JLT4:5:1191:20562:4251,LH00995:25:23T55JLT4:5:1191:27891:19412,LH00995:25:23T55JLT4:5:1337:43561:6843,LH00995:25:23T55JLT4:5:1340:9130:8637,LH00995:25:23T55JLT4:5:1443:33368:6535,LH00995:25:23T55JLT4:5:1456:1752:11159,LH00995:25:23T55JLT4:5:2116:16169:27721,LH00995:25:23T55JLT4:5:2153:48893:20645,LH00995:25:23T55JLT4:5:2277:32858:2289,LH00995:25:23T55JLT4:5:2348:16719:14578,LH00995:25:23T55JLT4:5:2361:32810:3382,LH00995:25:23T55JLT4:5:2428:18110:29235,LH00995:25:23T55JLT4:5:2459:14098:3060,LH00995:25:23T55JLT4:5:2466:47971:19076,LH00995:25:23T55JLT4:6:1108:5886:13359,LH00995:25:23T55JLT4:6:1139:8483:1070,LH00995:25:23T55JLT4:6:1222:7974:22327,LH00995:25:23T55JLT4:6:1231:13580:2191,LH00995:25:23T55JLT4:6:1373:17156:22509,LH00995:25:23T55JLT4:6:1378:15352:25325,LH00995:25:23T55JLT4:6:2232:41822:14956,LH00995:25:23T55JLT4:6:2253:28943:14031,LH00995:25:23T55JLT4:6:2301:51190:12182,LH00995:25:23T55JLT4:6:2364:38570:3887,LH00995:25:23T55JLT4:6:2381:21015:23139,LH00995:25:23T55JLT4:6:2420:28757:9113,LH00995:25:23T55JLT4:6:2466:36070:12840,LH00995:25:23T55JLT4:6:2484:21104:16932,LH00995:25:23T55JLT4:8:1251:38910:16890,LH00995:25:23T55JLT4:8:1331:39961:1589,LH00995:25:23T55JLT4:8:1331:39970:1603,LH00995:25:23T55JLT4:8:1350:20926:16287,LH00995:25:23T55JLT4:8:1432:32446:14045,LH00995:25:23T55JLT4:8:1471:19089:3130,LH00995:25:23T55JLT4:8:2180:7836:18950,LH00995:25:23T55JLT4:8:2245:4770:8735,LH00995:25:23T55JLT4:8:2450:7173:20239,LH00995:25:23T55JLT4:8:2458:43748:2738,LH00995:25:23T55JLT4:8:2458:51393:17969,LH00995:25:23T55JLT4:8:2483:5053:8076,LH00995:25:23T55JLT4:5:1272:32559:17408,LH00995:25:23T55JLT4:5:2462:44913:2037,LH00995:25:23T55JLT4:6:2447:39800:24709,LH00995:25:23T55JLT4:8:2175:15724:16694	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	3	41	-/-	-/-	.	44	ENST00000330062	ENST00000394480	deletion	8.067986230636834e-05	0.01035615054306643	0.0052184152026863995																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	Arriba	1	0	14		14	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	confidence:medium;duplicates(6)	medium	deletion	CDS/splice-site	CDS/splice-site	30980	1846	6.0	0.0	0.0	0.0									7	7	False	duplicates(6)		FAIL		False	chr15:90102276	chr15:88184299	chr15:90102276-chr15:88184299	.	.	medium	30980	1846	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(6)	GCGGGTCGTGCGCTCGCTCTGCAGAGCCTCAGGCTCGCGGCCGGCCTGGGCGCCGGCGGCCCTGACAGCCCCCACCTCGCAAGAGCAGCCGCGGCGCCACT|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTT	IDH2	NTRK3	ENSG00000182054	ENSG00000140538	RVVRSLCRASGSRPAWAPAALTAPTSQEQPRRH|yt*	LH00995:25:23T55JLT4:2:2213:41321:11425,LH00995:25:23T55JLT4:3:1104:41377:26236,LH00995:25:23T55JLT4:4:2125:31079:15909,LH00995:25:23T55JLT4:6:1490:13693:10963,LH00995:25:23T55JLT4:6:2377:51651:8581,LH00995:25:23T55JLT4:6:2381:12229:13247,LH00995:25:23T55JLT4:6:2477:11590:7460,LH00995:25:23T55JLT4:7:2427:12188:23125,LH00995:25:23T55JLT4:8:2115:3856:20827,LH00995:25:23T55JLT4:1:1296:37551:4503,LH00995:25:23T55JLT4:2:1253:24356:25311,LH00995:25:23T55JLT4:3:1174:45883:15993,LH00995:25:23T55JLT4:3:1350:7771:6899,LH00995:25:23T55JLT4:3:1479:40204:20141,LH00995:25:23T55JLT4:3:2281:50098:5582,LH00995:25:23T55JLT4:6:1427:3961:12294,LH00995:25:23T55JLT4:7:2135:13475:19664,LH00995:25:23T55JLT4:7:2169:41086:25087,LH00995:25:23T55JLT4:8:1465:42963:21500,LH00995:25:23T55JLT4:8:2478:4171:26390	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	7	7	-/-	-/-	.	14	ENST00000330062	ENST00000394480	deletion	0.00022590118436763805	0.0037776578521316784	0.002001779518249658																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	STAR-Fusion	1	0	47	0.1593	47	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	47		False																																										1	ENST00000560061.1	1-115	ENST00000626019.2	249-2595	0.1593	PASS	atggccggctacctgcgggtcgtgcgctcgctctgcagagcctcaggctcgcggccggcctgggcgccggcggccctgacagcccccacctcgcaagagcagccgcggcgccactACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|-|[0]90102276-90102390[0]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAGYLRVVRSLCRASGSRPAWAPAALTAPTSQEQPRRHYT*RTGAVFTRSTPWTWSSTPDFKS*PSRTQDFGAFSPEPLPRTPICVI*TCQVTGSPHSRGSSSRR*VFGNCSWSRTFSTAAVTSAGCSSGRSRGRPSSTARTSTASTLMAPSFLSSA*TSVSVTFLRSA*ATST*PYERVTTLLSLAMALDHPFLMWTG*SLGCSPSTLTRPI*TGPMFMPST*RW*M*RVRTMASP*RALQRTWWA*AMPVLPSLSTIPHVW*AWRSLSCAWSTASSLWCVATPHQRCTGCTMGSLCGSPRSSMWNTTKRERFPRAACSSTSPPTTTMATIPSLPKTHWAQPTRPSMATSSRSPFQRARITLSCLTK*VPHLLSL*PTNQKKTLLGYP*QLDLLLLPVSCWWFSSS*STNMVDGPNLE*RVPWLSSVVRRTQPAHCTTSTTASPRPRHWMPGPTLWSLA*LASLSLRTPSTSVRDTTATSRTRMCSTLRGETSC*SENWVREPLERSSWPSATTSARPRTRCLWL*RP*RIPPWLPGRISRGRPSCSPTCSMSTLSSSMECAAMGTPSSWSLNT*SMET*ISSSGPMGQMQ*SLWMDSHARPRVSWGSPKCSTLPVRSPRVWCTWPPSTLCTETWPPGTAWLERIC**RLGTSACPEMSTARIITGKGHARRARSVWCGSGRG*QQRQLPHSLIHLEMIFVYGVRWEDTPCSPFAGCLLKASCTGSSLQRVMYGASG*SSGRSSPMESSHGSNSQTRRSLSALPKVVFWSGPESAPKRCTMSCWGAGRGNHSSG*TSRRSTKSSMLWGRPPQSTWTFLA	IDH2--NTRK3	47	LH00995:25:23T55JLT4:1:1123:6776:3382,LH00995:25:23T55JLT4:1:1180:37939:9940,LH00995:25:23T55JLT4:1:1278:25197:25367,LH00995:25:23T55JLT4:1:1330:13912:13751,LH00995:25:23T55JLT4:1:1396:32462:23770,LH00995:25:23T55JLT4:1:1397:48941:19524,LH00995:25:23T55JLT4:1:1451:36734:4125,LH00995:25:23T55JLT4:1:1464:27608:1771,LH00995:25:23T55JLT4:1:2113:8831:28296,LH00995:25:23T55JLT4:1:2115:18046:6955,LH00995:25:23T55JLT4:1:2329:7585:24989,LH00995:25:23T55JLT4:1:2374:15295:17633,LH00995:25:23T55JLT4:1:2446:21128:28912,LH00995:25:23T55JLT4:1:2473:11290:18880,LH00995:25:23T55JLT4:2:1229:24065:3760,LH00995:25:23T55JLT4:2:1267:15238:28997,LH00995:25:23T55JLT4:2:1310:5166:20827,LH00995:25:23T55JLT4:2:1394:40034:28478,LH00995:25:23T55JLT4:2:1437:27932:1378,LH00995:25:23T55JLT4:2:1488:7440:10052,LH00995:25:23T55JLT4:2:2219:2569:25606,LH00995:25:23T55JLT4:2:2450:40479:25774,LH00995:25:23T55JLT4:3:1482:3354:29347,LH00995:25:23T55JLT4:3:2168:18377:27651,LH00995:25:23T55JLT4:3:2177:11970:8651,LH00995:25:23T55JLT4:4:1229:11946:6563,LH00995:25:23T55JLT4:4:1436:40973:12140,LH00995:25:23T55JLT4:5:1191:27891:19412,LH00995:25:23T55JLT4:5:1272:32559:17408,LH00995:25:23T55JLT4:5:1337:43561:6843,LH00995:25:23T55JLT4:5:1443:33368:6535,LH00995:25:23T55JLT4:5:2153:48893:20645,LH00995:25:23T55JLT4:5:2277:32858:2289,LH00995:25:23T55JLT4:5:2462:44913:2037,LH00995:25:23T55JLT4:5:2466:47971:19076,LH00995:25:23T55JLT4:6:1108:5886:13359,LH00995:25:23T55JLT4:6:1139:8483:1070,LH00995:25:23T55JLT4:6:1373:17156:22509,LH00995:25:23T55JLT4:6:1378:15352:25325,LH00995:25:23T55JLT4:6:2253:28943:14031,LH00995:25:23T55JLT4:6:2447:39800:24709,LH00995:25:23T55JLT4:6:2466:36070:12840,LH00995:25:23T55JLT4:6:2484:21104:16932,LH00995:25:23T55JLT4:8:1331:39961:1589,LH00995:25:23T55JLT4:8:2180:7836:18950,LH00995:25:23T55JLT4:8:2450:7173:20239,LH00995:25:23T55JLT4:8:2483:5053:8076	YES_LDAS	GT	1.6895	chr15:90102276:-	IDH2^ENSG00000182054.10	.	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"		False	chr15:90102276-chr15:88184299	47.0	0.0		47	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	STAR-Fusion	1	0	14	0.0686	14	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	14		False																																										1	ENST00000560061.1	1-115	ENST00000626019.2	249-2595	0.0686	PASS	atggccggctacctgcgggtcgtgcgctcgctctgcagagcctcaggctcgcggccggcctgggcgccggcggccctgacagcccccacctcgcaagagcagccgcggcgccactACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|-|[0]90102276-90102390[0]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAGYLRVVRSLCRASGSRPAWAPAALTAPTSQEQPRRHYT*RTGAVFTRSTPWTWSSTPDFKS*PSRTQDFGAFSPEPLPRTPICVI*TCQVTGSPHSRGSSSRR*VFGNCSWSRTFSTAAVTSAGCSSGRSRGRPSSTARTSTASTLMAPSFLSSA*TSVSVTFLRSA*ATST*PYERVTTLLSLAMALDHPFLMWTG*SLGCSPSTLTRPI*TGPMFMPST*RW*M*RVRTMASP*RALQRTWWA*AMPVLPSLSTIPHVW*AWRSLSCAWSTASSLWCVATPHQRCTGCTMGSLCGSPRSSMWNTTKRERFPRAACSSTSPPTTTMATIPSLPKTHWAQPTRPSMATSSRSPFQRARITLSCLTK*VPHLLSL*PTNQKKTLLGYP*QLDLLLLPVSCWWFSSS*STNMVDGPNLE*RVPWLSSVVRRTQPAHCTTSTTASPRPRHWMPGPTLWSLA*LASLSLRTPSTSVRDTTATSRTRMCSTLRGETSC*SENWVREPLERSSWPSATTSARPRTRCLWL*RP*RIPPWLPGRISRGRPSCSPTCSMSTLSSSMECAAMGTPSSWSLNT*SMET*ISSSGPMGQMQ*SLWMDSHARPRVSWGSPKCSTLPVRSPRVWCTWPPSTLCTETWPPGTAWLERIC**RLGTSACPEMSTARIITGKGHARRARSVWCGSGRG*QQRQLPHSLIHLEMIFVYGVRWEDTPCSPFAGCLLKASCTGSSLQRVMYGASG*SSGRSSPMESSHGSNSQTRRSLSALPKVVFWSGPESAPKRCTMSCWGAGRGNHSSG*TSRRSTKSSMLWGRPPQSTWTFLA	IDH2--NTRK3	14	LH00995:25:23T55JLT4:1:1296:37551:4503,LH00995:25:23T55JLT4:2:1253:24356:25311,LH00995:25:23T55JLT4:2:2213:41321:11425,LH00995:25:23T55JLT4:3:1104:41377:26236,LH00995:25:23T55JLT4:3:1174:45883:15993,LH00995:25:23T55JLT4:3:2281:50098:5582,LH00995:25:23T55JLT4:4:2125:31079:15909,LH00995:25:23T55JLT4:6:1427:3961:12294,LH00995:25:23T55JLT4:6:1490:13693:10963,LH00995:25:23T55JLT4:6:2377:51651:8581,LH00995:25:23T55JLT4:6:2381:12229:13247,LH00995:25:23T55JLT4:7:2427:12188:23125,LH00995:25:23T55JLT4:8:1465:42963:21500,LH00995:25:23T55JLT4:8:2478:4171:26390	YES_LDAS	GT	1.6895	chr15:90102276:-	IDH2^ENSG00000182054.10	.	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"		False	chr15:90102276-chr15:88184299	14.0	0.0		14	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	Arriba	1	0	14		14	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	confidence:medium;duplicates(6)	medium	deletion	CDS/splice-site	CDS/splice-site	30980	1846	6.0	0.0	0.0	0.0									7	7	False	duplicates(6)		FAIL		False	chr15:90102276	chr15:88184299	chr15:90102276-chr15:88184299	.	.	medium	30980	1846	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(6)	GCGGGTCGTGCGCTCGCTCTGCAGAGCCTCAGGCTCGCGGCCGGCCTGGGCGCCGGCGGCCCTGACAGCCCCCACCTCGCAAGAGCAGCCGCGGCGCCACT|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTT	IDH2	NTRK3	ENSG00000182054	ENSG00000140538	RVVRSLCRASGSRPAWAPAALTAPTSQEQPRRH|yt*	LH00995:25:23T55JLT4:2:2213:41321:11425,LH00995:25:23T55JLT4:3:1104:41377:26236,LH00995:25:23T55JLT4:4:2125:31079:15909,LH00995:25:23T55JLT4:6:1490:13693:10963,LH00995:25:23T55JLT4:6:2377:51651:8581,LH00995:25:23T55JLT4:6:2381:12229:13247,LH00995:25:23T55JLT4:6:2477:11590:7460,LH00995:25:23T55JLT4:7:2427:12188:23125,LH00995:25:23T55JLT4:8:2115:3856:20827,LH00995:25:23T55JLT4:1:1296:37551:4503,LH00995:25:23T55JLT4:2:1253:24356:25311,LH00995:25:23T55JLT4:3:1174:45883:15993,LH00995:25:23T55JLT4:3:1350:7771:6899,LH00995:25:23T55JLT4:3:1479:40204:20141,LH00995:25:23T55JLT4:3:2281:50098:5582,LH00995:25:23T55JLT4:6:1427:3961:12294,LH00995:25:23T55JLT4:7:2135:13475:19664,LH00995:25:23T55JLT4:7:2169:41086:25087,LH00995:25:23T55JLT4:8:1465:42963:21500,LH00995:25:23T55JLT4:8:2478:4171:26390	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	7	7	-/-	-/-	.	14	ENST00000330062	ENST00000394480	deletion	0.00022590118436763805	0.0037776578521316784	0.002001779518249658																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	Arriba	1	0	44		44	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	confidence:medium;duplicates(39)	medium	deletion	CDS/splice-site	CDS/splice-site	37181	3918	39.0	0.0	0.0	0.0									3	41	False	duplicates(39)		FAIL		False	chr15:90102276	chr15:88184299	chr15:90102276-chr15:88184299	.	.	medium	37181	3918	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(39)	CTCTGCAGAGCCTCAGGCTCGCGGCCGGCCTGGGCGCCGGCGGCCCTGACAGCCCCCACCTCGCAAGAGCAGCCGCGGCGCCACT|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGA	IDH2	NTRK3	ENSG00000182054	ENSG00000140538	LCRASGSRPAWAPAALTAPTSQEQPRRH|yt*	LH00995:25:23T55JLT4:1:1123:6776:3382,LH00995:25:23T55JLT4:1:1180:37939:9940,LH00995:25:23T55JLT4:1:1278:25197:25367,LH00995:25:23T55JLT4:1:1330:13912:13751,LH00995:25:23T55JLT4:1:1396:32462:23770,LH00995:25:23T55JLT4:1:1397:48941:19524,LH00995:25:23T55JLT4:1:1451:36734:4125,LH00995:25:23T55JLT4:1:1464:27608:1771,LH00995:25:23T55JLT4:1:2113:8831:28296,LH00995:25:23T55JLT4:1:2115:18046:6955,LH00995:25:23T55JLT4:1:2329:7585:24989,LH00995:25:23T55JLT4:1:2374:15295:17633,LH00995:25:23T55JLT4:1:2446:21128:28912,LH00995:25:23T55JLT4:1:2473:11290:18880,LH00995:25:23T55JLT4:2:1229:24065:3760,LH00995:25:23T55JLT4:2:1267:15238:28997,LH00995:25:23T55JLT4:2:1310:5166:20827,LH00995:25:23T55JLT4:2:1394:40034:28478,LH00995:25:23T55JLT4:2:1437:27932:1378,LH00995:25:23T55JLT4:2:1488:7440:10052,LH00995:25:23T55JLT4:2:2219:2569:25606,LH00995:25:23T55JLT4:2:2261:15821:23952,LH00995:25:23T55JLT4:2:2450:40479:25774,LH00995:25:23T55JLT4:3:1189:48885:13037,LH00995:25:23T55JLT4:3:1265:19607:20645,LH00995:25:23T55JLT4:3:1287:42809:4083,LH00995:25:23T55JLT4:3:1310:30836:19524,LH00995:25:23T55JLT4:3:1482:3354:29347,LH00995:25:23T55JLT4:3:2117:24599:9590,LH00995:25:23T55JLT4:3:2133:18992:18403,LH00995:25:23T55JLT4:3:2168:18377:27651,LH00995:25:23T55JLT4:3:2177:11970:8651,LH00995:25:23T55JLT4:3:2333:42680:27511,LH00995:25:23T55JLT4:4:1229:11946:6563,LH00995:25:23T55JLT4:4:1311:46603:25087,LH00995:25:23T55JLT4:4:1412:50228:29459,LH00995:25:23T55JLT4:4:1436:40973:12140,LH00995:25:23T55JLT4:5:1143:50025:26474,LH00995:25:23T55JLT4:5:1164:39444:29193,LH00995:25:23T55JLT4:5:1191:20562:4251,LH00995:25:23T55JLT4:5:1191:27891:19412,LH00995:25:23T55JLT4:5:1337:43561:6843,LH00995:25:23T55JLT4:5:1340:9130:8637,LH00995:25:23T55JLT4:5:1443:33368:6535,LH00995:25:23T55JLT4:5:1456:1752:11159,LH00995:25:23T55JLT4:5:2116:16169:27721,LH00995:25:23T55JLT4:5:2153:48893:20645,LH00995:25:23T55JLT4:5:2277:32858:2289,LH00995:25:23T55JLT4:5:2348:16719:14578,LH00995:25:23T55JLT4:5:2361:32810:3382,LH00995:25:23T55JLT4:5:2428:18110:29235,LH00995:25:23T55JLT4:5:2459:14098:3060,LH00995:25:23T55JLT4:5:2466:47971:19076,LH00995:25:23T55JLT4:6:1108:5886:13359,LH00995:25:23T55JLT4:6:1139:8483:1070,LH00995:25:23T55JLT4:6:1222:7974:22327,LH00995:25:23T55JLT4:6:1231:13580:2191,LH00995:25:23T55JLT4:6:1373:17156:22509,LH00995:25:23T55JLT4:6:1378:15352:25325,LH00995:25:23T55JLT4:6:2232:41822:14956,LH00995:25:23T55JLT4:6:2253:28943:14031,LH00995:25:23T55JLT4:6:2301:51190:12182,LH00995:25:23T55JLT4:6:2364:38570:3887,LH00995:25:23T55JLT4:6:2381:21015:23139,LH00995:25:23T55JLT4:6:2420:28757:9113,LH00995:25:23T55JLT4:6:2466:36070:12840,LH00995:25:23T55JLT4:6:2484:21104:16932,LH00995:25:23T55JLT4:8:1251:38910:16890,LH00995:25:23T55JLT4:8:1331:39961:1589,LH00995:25:23T55JLT4:8:1331:39970:1603,LH00995:25:23T55JLT4:8:1350:20926:16287,LH00995:25:23T55JLT4:8:1432:32446:14045,LH00995:25:23T55JLT4:8:1471:19089:3130,LH00995:25:23T55JLT4:8:2180:7836:18950,LH00995:25:23T55JLT4:8:2245:4770:8735,LH00995:25:23T55JLT4:8:2450:7173:20239,LH00995:25:23T55JLT4:8:2458:43748:2738,LH00995:25:23T55JLT4:8:2458:51393:17969,LH00995:25:23T55JLT4:8:2483:5053:8076,LH00995:25:23T55JLT4:5:1272:32559:17408,LH00995:25:23T55JLT4:5:2462:44913:2037,LH00995:25:23T55JLT4:6:2447:39800:24709,LH00995:25:23T55JLT4:8:2175:15724:16694	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	3	41	-/-	-/-	.	44	ENST00000330062	ENST00000394480	deletion	8.067986230636834e-05	0.01035615054306643	0.0052184152026863995																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	STAR-Fusion	1	0	14	0.0686	14	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	14		False																																										1	ENST00000560061.1	1-115	ENST00000626019.2	249-2595	0.0686	PASS	atggccggctacctgcgggtcgtgcgctcgctctgcagagcctcaggctcgcggccggcctgggcgccggcggccctgacagcccccacctcgcaagagcagccgcggcgccactACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|-|[0]90102276-90102390[0]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAGYLRVVRSLCRASGSRPAWAPAALTAPTSQEQPRRHYT*RTGAVFTRSTPWTWSSTPDFKS*PSRTQDFGAFSPEPLPRTPICVI*TCQVTGSPHSRGSSSRR*VFGNCSWSRTFSTAAVTSAGCSSGRSRGRPSSTARTSTASTLMAPSFLSSA*TSVSVTFLRSA*ATST*PYERVTTLLSLAMALDHPFLMWTG*SLGCSPSTLTRPI*TGPMFMPST*RW*M*RVRTMASP*RALQRTWWA*AMPVLPSLSTIPHVW*AWRSLSCAWSTASSLWCVATPHQRCTGCTMGSLCGSPRSSMWNTTKRERFPRAACSSTSPPTTTMATIPSLPKTHWAQPTRPSMATSSRSPFQRARITLSCLTK*VPHLLSL*PTNQKKTLLGYP*QLDLLLLPVSCWWFSSS*STNMVDGPNLE*RVPWLSSVVRRTQPAHCTTSTTASPRPRHWMPGPTLWSLA*LASLSLRTPSTSVRDTTATSRTRMCSTLRGETSC*SENWVREPLERSSWPSATTSARPRTRCLWL*RP*RIPPWLPGRISRGRPSCSPTCSMSTLSSSMECAAMGTPSSWSLNT*SMET*ISSSGPMGQMQ*SLWMDSHARPRVSWGSPKCSTLPVRSPRVWCTWPPSTLCTETWPPGTAWLERIC**RLGTSACPEMSTARIITGKGHARRARSVWCGSGRG*QQRQLPHSLIHLEMIFVYGVRWEDTPCSPFAGCLLKASCTGSSLQRVMYGASG*SSGRSSPMESSHGSNSQTRRSLSALPKVVFWSGPESAPKRCTMSCWGAGRGNHSSG*TSRRSTKSSMLWGRPPQSTWTFLA	IDH2--NTRK3	14	LH00995:25:23T55JLT4:1:1296:37551:4503,LH00995:25:23T55JLT4:2:1253:24356:25311,LH00995:25:23T55JLT4:2:2213:41321:11425,LH00995:25:23T55JLT4:3:1104:41377:26236,LH00995:25:23T55JLT4:3:1174:45883:15993,LH00995:25:23T55JLT4:3:2281:50098:5582,LH00995:25:23T55JLT4:4:2125:31079:15909,LH00995:25:23T55JLT4:6:1427:3961:12294,LH00995:25:23T55JLT4:6:1490:13693:10963,LH00995:25:23T55JLT4:6:2377:51651:8581,LH00995:25:23T55JLT4:6:2381:12229:13247,LH00995:25:23T55JLT4:7:2427:12188:23125,LH00995:25:23T55JLT4:8:1465:42963:21500,LH00995:25:23T55JLT4:8:2478:4171:26390	YES_LDAS	GT	1.6895	chr15:90102276:-	IDH2^ENSG00000182054.10	.	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"		False	chr15:90102276-chr15:88184299	14.0	0.0		14	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	IDH2--NTRK3	IDH2--NTRK3	IDH2--NTRK3	FP	FP		Arriba; STAR-Fusion		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IDH2	NTRK3	90102276	88184299	chr15:90102276-chr15:88184299	-,-	STAR-Fusion	1	0	47	0.1593	47	PASS	out-of-frame	IDH2--NTRK3	IDH2--NTRK3	"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6895	False	False	False	GT	AG	47		False																																										1	ENST00000560061.1	1-115	ENST00000626019.2	249-2595	0.1593	PASS	atggccggctacctgcgggtcgtgcgctcgctctgcagagcctcaggctcgcggccggcctgggcgccggcggccctgacagcccccacctcgcaagagcagccgcggcgccactACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCTGACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGTGTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGCAATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCACGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCCACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAGAGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATTGCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCACGGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGGTCCCGTGGCTGTCATCAGTGGTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACCACGGCATCACCACGCCCTCGTCACTGGATGCCGGGCCCGACACTGTGGTCATTGGCATGACTCGCATCCCTGTCATTGAGAACCCCCAGTACTTCCGTCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAGACCTGAATAAGTTCCTCAGGGCCCATGGGCCAGATGCAATGATCCTTGTGGATGGACAGCCACGCCAGGCCAAGGGTGAGCTGGGGCTCTCCCAAATGCTCCACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCCCAGCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACTTCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGGAAGGGCCATGCCAGAAGGGCCCGTTCAGTGTGGTGTGGCAGCGGCAGAGGCTAGCAGCAACGGCAGCTTCCACACTCTTTAATCCATCTGGAAATGATTTTTGTATATGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG	chr15|-|[0]90102276-90102390[0]<==>chr15|-|[2]87876935-87877120[0]|[2]87880270-87880428[0]|[2]87885694-87885735[0]|[2]87908489-87908563[0]|[2]87929191-87929434[2]|[1]87933012-87933184[0]|[2]87940623-87940753[1]|[0]88032857-88033045[1]|[0]88126271-88126373[0]|[2]88127162-88127226[1]|[0]88128711-88128734[1]|[0]88135101-88135397[1]|[0]88135899-88136040[0]|[2]88136467-88136609[1]|[0]88137404-88137561[2]|[1]88147335-88147403[2]|[1]88183418-88183489[2]|[1]88184225-88184299[2]	MAGYLRVVRSLCRASGSRPAWAPAALTAPTSQEQPRRHYT*RTGAVFTRSTPWTWSSTPDFKS*PSRTQDFGAFSPEPLPRTPICVI*TCQVTGSPHSRGSSSRR*VFGNCSWSRTFSTAAVTSAGCSSGRSRGRPSSTARTSTASTLMAPSFLSSA*TSVSVTFLRSA*ATST*PYERVTTLLSLAMALDHPFLMWTG*SLGCSPSTLTRPI*TGPMFMPST*RW*M*RVRTMASP*RALQRTWWA*AMPVLPSLSTIPHVW*AWRSLSCAWSTASSLWCVATPHQRCTGCTMGSLCGSPRSSMWNTTKRERFPRAACSSTSPPTTTMATIPSLPKTHWAQPTRPSMATSSRSPFQRARITLSCLTK*VPHLLSL*PTNQKKTLLGYP*QLDLLLLPVSCWWFSSS*STNMVDGPNLE*RVPWLSSVVRRTQPAHCTTSTTASPRPRHWMPGPTLWSLA*LASLSLRTPSTSVRDTTATSRTRMCSTLRGETSC*SENWVREPLERSSWPSATTSARPRTRCLWL*RP*RIPPWLPGRISRGRPSCSPTCSMSTLSSSMECAAMGTPSSWSLNT*SMET*ISSSGPMGQMQ*SLWMDSHARPRVSWGSPKCSTLPVRSPRVWCTWPPSTLCTETWPPGTAWLERIC**RLGTSACPEMSTARIITGKGHARRARSVWCGSGRG*QQRQLPHSLIHLEMIFVYGVRWEDTPCSPFAGCLLKASCTGSSLQRVMYGASG*SSGRSSPMESSHGSNSQTRRSLSALPKVVFWSGPESAPKRCTMSCWGAGRGNHSSG*TSRRSTKSSMLWGRPPQSTWTFLA	IDH2--NTRK3	47	LH00995:25:23T55JLT4:1:1123:6776:3382,LH00995:25:23T55JLT4:1:1180:37939:9940,LH00995:25:23T55JLT4:1:1278:25197:25367,LH00995:25:23T55JLT4:1:1330:13912:13751,LH00995:25:23T55JLT4:1:1396:32462:23770,LH00995:25:23T55JLT4:1:1397:48941:19524,LH00995:25:23T55JLT4:1:1451:36734:4125,LH00995:25:23T55JLT4:1:1464:27608:1771,LH00995:25:23T55JLT4:1:2113:8831:28296,LH00995:25:23T55JLT4:1:2115:18046:6955,LH00995:25:23T55JLT4:1:2329:7585:24989,LH00995:25:23T55JLT4:1:2374:15295:17633,LH00995:25:23T55JLT4:1:2446:21128:28912,LH00995:25:23T55JLT4:1:2473:11290:18880,LH00995:25:23T55JLT4:2:1229:24065:3760,LH00995:25:23T55JLT4:2:1267:15238:28997,LH00995:25:23T55JLT4:2:1310:5166:20827,LH00995:25:23T55JLT4:2:1394:40034:28478,LH00995:25:23T55JLT4:2:1437:27932:1378,LH00995:25:23T55JLT4:2:1488:7440:10052,LH00995:25:23T55JLT4:2:2219:2569:25606,LH00995:25:23T55JLT4:2:2450:40479:25774,LH00995:25:23T55JLT4:3:1482:3354:29347,LH00995:25:23T55JLT4:3:2168:18377:27651,LH00995:25:23T55JLT4:3:2177:11970:8651,LH00995:25:23T55JLT4:4:1229:11946:6563,LH00995:25:23T55JLT4:4:1436:40973:12140,LH00995:25:23T55JLT4:5:1191:27891:19412,LH00995:25:23T55JLT4:5:1272:32559:17408,LH00995:25:23T55JLT4:5:1337:43561:6843,LH00995:25:23T55JLT4:5:1443:33368:6535,LH00995:25:23T55JLT4:5:2153:48893:20645,LH00995:25:23T55JLT4:5:2277:32858:2289,LH00995:25:23T55JLT4:5:2462:44913:2037,LH00995:25:23T55JLT4:5:2466:47971:19076,LH00995:25:23T55JLT4:6:1108:5886:13359,LH00995:25:23T55JLT4:6:1139:8483:1070,LH00995:25:23T55JLT4:6:1373:17156:22509,LH00995:25:23T55JLT4:6:1378:15352:25325,LH00995:25:23T55JLT4:6:2253:28943:14031,LH00995:25:23T55JLT4:6:2447:39800:24709,LH00995:25:23T55JLT4:6:2466:36070:12840,LH00995:25:23T55JLT4:6:2484:21104:16932,LH00995:25:23T55JLT4:8:1331:39961:1589,LH00995:25:23T55JLT4:8:2180:7836:18950,LH00995:25:23T55JLT4:8:2450:7173:20239,LH00995:25:23T55JLT4:8:2483:5053:8076	YES_LDAS	GT	1.6895	chr15:90102276:-	IDH2^ENSG00000182054.10	.	I-set-PARTIAL|~249-301|2.8e-13^ig-PARTIAL|~249-298|2.4e-18^Ig_3-PARTIAL|~249-288|1.4e-12^Ig_2-PARTIAL|~249-301|3.5e-10^C2-set_2-PARTIAL|~249-287|1.4e-06^LRR_1|315-322|9.6^C2-set_2|319-345|6e-05^I-set|323-391|4.3e-10^Ig_3|325-382|1.1e-07^ig|326-386|0.0041^Ig_2|327-383|1.9e-05^TrkA_TMD|431-451|7.2e-05^PK_Tyr_Ser-Thr|539-719|1.6e-56^Pkinase|540-708|2.1e-32^Ig_3|737-765|1.9^I-set|744-764|5.7^PK_Tyr_Ser-Thr|753-848|4.5e-37^Pkinase|760-846|6.2e-14	FRAMESHIFT	AG	1.8295	chr15:88184299:-	NTRK3^ENSG00000140538.16	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr15:1.83Mb]""]"		False	chr15:90102276-chr15:88184299	47.0	0.0		47	1173_SK8	STAR-Fusion
fp_audit	1173_SK8	fusion	IGF1R--MYC	IGF1R--MYC	IGF1R--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	IGF1R	MYC	98649675	127738248	chr15:98649675-chr8:127738248	+,+	Arriba	1	0	5		5	PASS	out-of-frame	IGF1R--MYC	IGF1R--MYC	confidence:medium;duplicates(3)	medium	translocation	CDS/splice-site	CDS/splice-site	65535	65535	3.0	0.0	0.0	0.0									4	1	False	duplicates(3)		FAIL		False	chr15:98649675	chr8:127738248	chr15:98649675-chr8:127738248	.	.	medium	65535	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(3)	AATGAAGTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCG	IGF1R	MYC	ENSG00000140443	ENSG00000136997	MKSGSGGGSPTSLWGLLFLSAALSLWPTSGE|tasrddapqr*	LH00995:25:23T55JLT4:6:1361:38271:16371,LH00995:25:23T55JLT4:2:1305:34493:6409,LH00995:25:23T55JLT4:3:1342:37761:1308,LH00995:25:23T55JLT4:4:1203:5903:16778,LH00995:25:23T55JLT4:4:1234:46709:5540,LH00995:25:23T55JLT4:5:1130:20529:25886,LH00995:25:23T55JLT4:5:2298:17164:11257,LH00995:25:23T55JLT4:8:2354:50745:14690	out-of-frame	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	CDS/splice-site	CDS/splice-site	4	1	+/+	+/+	.	5	ENST00000650285	ENST00000621592	translocation	6.103236241016799e-05	1.52587890625e-05	3.8145575736333996e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--MYC	IGF1R--MYC	IGF1R--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	IGF1R	MYC	98649675	127738251	chr15:98649675-chr8:127738251	+,+	Arriba	1	0	2		2	PASS	out-of-frame	IGF1R--MYC	IGF1R--MYC	confidence:medium;duplicates(1)	medium	translocation	CDS/splice-site	CDS/splice-site	65535	65535	1.0	0.0	0.0	0.0									1	1	False	duplicates(1)		FAIL		False	chr15:98649675	chr8:127738251	chr15:98649675-chr8:127738251	.	.	medium	65535	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	duplicates(1)	GTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGT	IGF1R	MYC	ENSG00000140443	ENSG00000136997	FLSAALSLWPTSGE|tsrddapqr*	LH00995:25:23T55JLT4:5:2405:49710:6058,LH00995:25:23T55JLT4:6:2303:13394:20897,LH00995:25:23T55JLT4:8:2431:44273:11075	out-of-frame	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	CDS/splice-site	CDS/splice-site	1	1	+/+	+/+	.	2	ENST00000650285	ENST00000524013	translocation	1.52587890625e-05	1.52587890625e-05	1.52587890625e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--MYC	IGF1R--MYC	IGF1R--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	IGF1R	MYC	98708107	127740396	chr15:98708107-chr8:127740396	+,+	Arriba	1	0	1		1	PASS	in-frame	IGF1R--MYC	IGF1R--MYC	confidence:low;duplicates(2)	low	translocation	CDS/splice-site	CDS/splice-site	65535	65535	2.0	0.0	0.0	0.0									0	1	True	duplicates(2)		FAIL		False	chr15:98708107	chr8:127740396	chr15:98708107-chr8:127740396	.	.	low	65535	65535	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	GGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AGGAGGAACAAGAAGATGAGGAAGAAATCGATGTTGTTTCTGTGGAAAgGAGGCAGGCTCCTGGCAAAAGGTCAGAGTCTGGATCACCTTCTGCTGGAGGCCACAGCAAACCTCC	IGF1R	MYC	ENSG00000140443	ENSG00000136997	DLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|kEEQEDEEEIDVVSVErRQAPGKRSESGSPSAGGHSKP	LH00995:25:23T55JLT4:4:1201:37081:26446,LH00995:25:23T55JLT4:6:1217:43327:27371,LH00995:25:23T55JLT4:6:1217:43335:27385	in-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(26%),Myc_leucine_zipper_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	+/+	.	1	ENST00000650285	ENST00000651626	translocation	0.0	1.52587890625e-05	7.62939453125e-06																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--MYC	IGF1R--MYC	IGF1R--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	IGF1R	MYC	98649675	127738248	chr15:98649675-chr8:127738248	+,+	Arriba	1	0	5		5	PASS	out-of-frame	IGF1R--MYC	IGF1R--MYC	confidence:medium;duplicates(3)	medium	translocation	CDS/splice-site	CDS/splice-site	65535	65535	3.0	0.0	0.0	0.0									4	1	False	duplicates(3)		FAIL		False	chr15:98649675	chr8:127738248	chr15:98649675-chr8:127738248	.	.	medium	65535	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(3)	AATGAAGTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCG	IGF1R	MYC	ENSG00000140443	ENSG00000136997	MKSGSGGGSPTSLWGLLFLSAALSLWPTSGE|tasrddapqr*	LH00995:25:23T55JLT4:6:1361:38271:16371,LH00995:25:23T55JLT4:2:1305:34493:6409,LH00995:25:23T55JLT4:3:1342:37761:1308,LH00995:25:23T55JLT4:4:1203:5903:16778,LH00995:25:23T55JLT4:4:1234:46709:5540,LH00995:25:23T55JLT4:5:1130:20529:25886,LH00995:25:23T55JLT4:5:2298:17164:11257,LH00995:25:23T55JLT4:8:2354:50745:14690	out-of-frame	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	CDS/splice-site	CDS/splice-site	4	1	+/+	+/+	.	5	ENST00000650285	ENST00000621592	translocation	6.103236241016799e-05	1.52587890625e-05	3.8145575736333996e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--MYC	IGF1R--MYC	IGF1R--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	IGF1R	MYC	98649675	127738251	chr15:98649675-chr8:127738251	+,+	Arriba	1	0	2		2	PASS	out-of-frame	IGF1R--MYC	IGF1R--MYC	confidence:medium;duplicates(1)	medium	translocation	CDS/splice-site	CDS/splice-site	65535	65535	1.0	0.0	0.0	0.0									1	1	False	duplicates(1)		FAIL		False	chr15:98649675	chr8:127738251	chr15:98649675-chr8:127738251	.	.	medium	65535	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	duplicates(1)	GTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGT	IGF1R	MYC	ENSG00000140443	ENSG00000136997	FLSAALSLWPTSGE|tsrddapqr*	LH00995:25:23T55JLT4:5:2405:49710:6058,LH00995:25:23T55JLT4:6:2303:13394:20897,LH00995:25:23T55JLT4:8:2431:44273:11075	out-of-frame	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	CDS/splice-site	CDS/splice-site	1	1	+/+	+/+	.	2	ENST00000650285	ENST00000524013	translocation	1.52587890625e-05	1.52587890625e-05	1.52587890625e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--MYC	IGF1R--MYC	IGF1R--MYC	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	IGF1R	MYC	98708107	127740396	chr15:98708107-chr8:127740396	+,+	Arriba	1	0	1		1	PASS	in-frame	IGF1R--MYC	IGF1R--MYC	confidence:low;duplicates(2)	low	translocation	CDS/splice-site	CDS/splice-site	65535	65535	2.0	0.0	0.0	0.0									0	1	True	duplicates(2)		FAIL		False	chr15:98708107	chr8:127740396	chr15:98708107-chr8:127740396	.	.	low	65535	65535	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	GGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AGGAGGAACAAGAAGATGAGGAAGAAATCGATGTTGTTTCTGTGGAAAgGAGGCAGGCTCCTGGCAAAAGGTCAGAGTCTGGATCACCTTCTGCTGGAGGCCACAGCAAACCTCC	IGF1R	MYC	ENSG00000140443	ENSG00000136997	DLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|kEEQEDEEEIDVVSVErRQAPGKRSESGSPSAGGHSKP	LH00995:25:23T55JLT4:4:1201:37081:26446,LH00995:25:23T55JLT4:6:1217:43327:27371,LH00995:25:23T55JLT4:6:1217:43335:27385	in-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(26%),Myc_leucine_zipper_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	+/+	.	1	ENST00000650285	ENST00000651626	translocation	0.0	1.52587890625e-05	7.62939453125e-06																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88184299	chr15:98708107-chr15:88184299	+,-	Arriba	1	0	18		18	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(18)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	3918	18.0	0.0	0.0	0.0									4	14	False	duplicates(18)		FAIL		False	chr15:98708107	chr15:88184299	chr15:98708107-chr15:88184299	.	.	medium	65535	3918	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(18)	AAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	KPMCEKTTINNEYNYRCWTTNRCQK|nt*	LH00995:25:23T55JLT4:1:1110:22123:17268,LH00995:25:23T55JLT4:1:1250:44524:6801,LH00995:25:23T55JLT4:1:1413:29275:20743,LH00995:25:23T55JLT4:1:2112:8661:27105,LH00995:25:23T55JLT4:1:2209:14478:13779,LH00995:25:23T55JLT4:1:2409:12455:20281,LH00995:25:23T55JLT4:1:2437:30723:6577,LH00995:25:23T55JLT4:2:1296:9511:14116,LH00995:25:23T55JLT4:2:2305:45042:3999,LH00995:25:23T55JLT4:2:2465:4940:20968,LH00995:25:23T55JLT4:3:1183:9697:18726,LH00995:25:23T55JLT4:3:1187:34161:8076,LH00995:25:23T55JLT4:3:1213:9810:22397,LH00995:25:23T55JLT4:3:2279:9810:7432,LH00995:25:23T55JLT4:3:2313:39411:2569,LH00995:25:23T55JLT4:4:1248:30650:27133,LH00995:25:23T55JLT4:4:1293:6040:12056,LH00995:25:23T55JLT4:5:1181:25310:21248,LH00995:25:23T55JLT4:5:1344:16492:13709,LH00995:25:23T55JLT4:5:1377:44832:26110,LH00995:25:23T55JLT4:5:2103:41256:23167,LH00995:25:23T55JLT4:5:2185:33498:11579,LH00995:25:23T55JLT4:6:1158:45811:8609,LH00995:25:23T55JLT4:6:2293:17269:2331,LH00995:25:23T55JLT4:8:1222:27883:12616,LH00995:25:23T55JLT4:8:1366:37753:10038,LH00995:25:23T55JLT4:8:2147:3427:6157,LH00995:25:23T55JLT4:1:2161:11833:7684,LH00995:25:23T55JLT4:1:2491:29242:1350,LH00995:25:23T55JLT4:3:2201:21751:22509,LH00995:25:23T55JLT4:3:2366:18960:10052,LH00995:25:23T55JLT4:6:1140:11897:4685,LH00995:25:23T55JLT4:6:1215:10360:22032,LH00995:25:23T55JLT4:6:1392:13871:13989,LH00995:25:23T55JLT4:6:1392:13879:14003,LH00995:25:23T55JLT4:8:1358:21144:20897	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	4	14	+/+	-/-	.	18	ENST00000650285	ENST00000394480	inversion	6.103236241016799e-05	0.003560528992878942	0.0018107806776445552																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98649675	88184299	chr15:98649675-chr15:88184299	+,-	Arriba	1	0	7		7	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(11),mismatches(1)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	3918	11.0	1.0	0.0	0.0									1	6	False	duplicates(11),mismatches(1)		FAIL		False	chr15:98649675	chr15:88184299	chr15:98649675-chr15:88184299	.	.	medium	65535	3918	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(7.0<8.0)	duplicates(11),mismatches(1)	AGTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAA	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	SGSGGGSPTSLWGLLFLSAALSLWPTSGE|nt*	LH00995:25:23T55JLT4:1:1116:23353:16596,LH00995:25:23T55JLT4:1:1361:24145:29431,LH00995:25:23T55JLT4:1:2278:32721:20575,LH00995:25:23T55JLT4:2:1147:16233:2191,LH00995:25:23T55JLT4:2:1153:16929:3424,LH00995:25:23T55JLT4:2:1204:51668:8553,LH00995:25:23T55JLT4:2:1248:6849:14634,LH00995:25:23T55JLT4:2:1314:38271:19146,LH00995:25:23T55JLT4:3:1280:46644:26811,LH00995:25:23T55JLT4:5:1492:49184:20505,LH00995:25:23T55JLT4:6:1285:45050:7376,LH00995:25:23T55JLT4:6:1322:44403:28646,LH00995:25:23T55JLT4:6:1324:37615:23392,LH00995:25:23T55JLT4:6:2202:32680:22803,LH00995:25:23T55JLT4:8:2170:51749:3452,LH00995:25:23T55JLT4:8:2201:22649:12406,LH00995:25:23T55JLT4:8:2209:18927:18347,LH00995:25:23T55JLT4:8:2449:7674:11047,LH00995:25:23T55JLT4:3:2132:40301:11958	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	6	+/+	-/-	.	7	ENST00000650285	ENST00000394480	inversion	1.52587890625e-05	0.0015290519877675841	0.0007721553884150421																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88147403	chr15:98708107-chr15:88147403	+,-	Arriba	1	0	4		4	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(1),mismatches(1)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	1549	1.0	1.0	0.0	0.0									2	2	False	duplicates(1),mismatches(1)		FAIL		False	chr15:98708107	chr15:88147403	chr15:98708107-chr15:88147403	.	.	medium	65535	1549	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(1),mismatches(1)	GTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATT___GCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|ktcqvtgsphsrgsssrr*	LH00995:25:23T55JLT4:1:2115:48602:23588,LH00995:25:23T55JLT4:5:1234:19631:27637,LH00995:25:23T55JLT4:6:1341:15708:6549,LH00995:25:23T55JLT4:6:2319:8629:3004,LH00995:25:23T55JLT4:1:2219:15910:13009,LH00995:25:23T55JLT4:8:1491:36394:18585	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	2	2	+/+	-/-	.	4	ENST00000650285	ENST00000394480	inversion	3.051711247081801e-05	0.0012894906511927789	0.0006600038818317985																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98948708	88184299	chr15:98948708-chr15:88184299	+,-	Arriba	1	0	5		5	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(9)	low	inversion	CDS/splice-site	CDS/splice-site	48801	3918	9.0	0.0	0.0	0.0									0	5	True	duplicates(9)		FAIL		False	chr15:98948708	chr15:88184299	chr15:98948708-chr15:88184299	.	.	low	48801	3918	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(5.0<8.0)	duplicates(9)	CGCCACACTGGCCGAGCAGCCCTACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGACAACTGTCCTGACATGCT|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	ATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMl|HIENWRSLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAFAKN	LH00995:25:23T55JLT4:2:1482:15214:28842,LH00995:25:23T55JLT4:2:1482:15230:28842,LH00995:25:23T55JLT4:3:1225:4697:21584,LH00995:25:23T55JLT4:3:1274:12294:19833,LH00995:25:23T55JLT4:3:1495:6671:10626,LH00995:25:23T55JLT4:3:2252:15967:14144,LH00995:25:23T55JLT4:5:1270:50915:3802,LH00995:25:23T55JLT4:6:1227:49216:26586,LH00995:25:23T55JLT4:6:2134:6412:13877,LH00995:25:23T55JLT4:6:2383:17633:9183,LH00995:25:23T55JLT4:6:2483:36183:17464,LH00995:25:23T55JLT4:8:1288:41304:6885,LH00995:25:23T55JLT4:8:1296:26063:2261,LH00995:25:23T55JLT4:8:1409:25076:11733	in-frame	Furin-like_cysteine_rich_region(100%),Protein_kinase_domain(90%),Receptor_L_domain(100%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	5	+/+	-/-	.	5	ENST00000650285	ENST00000394480	inversion	0.0	0.0012745347947998981	0.0006372673973999491																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88127226	chr15:98708107-chr15:88127226	+,-	Arriba	1	0	2		2	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	CDS/splice-site	65535	2690	2.0	0.0	0.0	0.0									0	2	True	duplicates(2)		FAIL		False	chr15:98708107	chr15:88127226	chr15:98708107-chr15:88127226	.	.	low	65535	2690	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(2)	CGCTGCTGGACCACAAACCGCTGCCAGAAAA|TTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGG___GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	RCWTTNRCQK|iDEVSPTPPITVTHKPEEDTFGVSIAVGLAAFACVLLVVLF	LH00995:25:23T55JLT4:1:1330:41952:1645,LH00995:25:23T55JLT4:8:1139:37001:9716,LH00995:25:23T55JLT4:8:1313:15109:19048,LH00995:25:23T55JLT4:8:2401:7003:9519	in-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000650285	ENST00000394480	inversion	0.0	0.0007429420505200594	0.0003714710252600297																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88126373	chr15:98708107-chr15:88126373	+,-	Arriba	1	0	1		1	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	CDS/splice-site	65535	1161	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr15:98708107	chr15:88126373	chr15:98708107-chr15:88126373	.	.	low	65535	1161	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	CAAACCGCTGCCAGAAAA|GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGAC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	NRCQK|sihsswtccfclcpvggslrhdqqiws	LH00995:25:23T55JLT4:2:2159:46005:13905,LH00995:25:23T55JLT4:4:1448:48076:2527,LH00995:25:23T55JLT4:6:1420:22875:12042	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.0008605851979345956	0.0004302925989672978																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98708107	88184299	chr15:98708107-chr15:88184299	+,-	Arriba	1	0	15		15	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(20)	medium	inversion	CDS/splice-site	CDS/splice-site	56359	1846	20.0	0.0	0.0	0.0									9	6	False	duplicates(20)		FAIL		False	chr15:98708107	chr15:88184299	chr15:98708107-chr15:88184299	.	.	medium	56359	1846	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(20)	TGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGA	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|nt*	LH00995:25:23T55JLT4:1:2434:7229:6689,LH00995:25:23T55JLT4:2:2497:20351:16638,LH00995:25:23T55JLT4:3:1184:14446:6241,LH00995:25:23T55JLT4:3:2218:25480:26138,LH00995:25:23T55JLT4:3:2319:44832:9211,LH00995:25:23T55JLT4:4:2439:11930:26628,LH00995:25:23T55JLT4:6:1397:11048:23588,LH00995:25:23T55JLT4:6:1452:22859:20001,LH00995:25:23T55JLT4:7:1123:30173:17254,LH00995:25:23T55JLT4:7:1266:50794:26516,LH00995:25:23T55JLT4:8:1217:16347:3873,LH00995:25:23T55JLT4:8:1234:37065:20477,LH00995:25:23T55JLT4:8:1457:11137:14578,LH00995:25:23T55JLT4:8:2137:13451:5386,LH00995:25:23T55JLT4:8:2234:10255:20393,LH00995:25:23T55JLT4:8:2234:10263:20379,LH00995:25:23T55JLT4:8:2369:42032:8707,LH00995:25:23T55JLT4:1:1307:5166:12364,LH00995:25:23T55JLT4:1:1414:25367:12910,LH00995:25:23T55JLT4:1:2327:40528:12378,LH00995:25:23T55JLT4:2:1310:10295:23770,LH00995:25:23T55JLT4:2:2170:4802:24737,LH00995:25:23T55JLT4:2:2172:5450:3915,LH00995:25:23T55JLT4:3:1219:4341:9141,LH00995:25:23T55JLT4:3:1254:15538:2583,LH00995:25:23T55JLT4:3:2185:41588:8833,LH00995:25:23T55JLT4:3:2494:14753:1560,LH00995:25:23T55JLT4:4:2414:41232:23910,LH00995:25:23T55JLT4:5:1316:14227:6451,LH00995:25:23T55JLT4:5:2257:26548:12574,LH00995:25:23T55JLT4:6:2164:16598:3802,LH00995:25:23T55JLT4:7:2229:18377:20589,LH00995:25:23T55JLT4:7:2352:35649:24807,LH00995:25:23T55JLT4:8:1408:2497:9730,LH00995:25:23T55JLT4:8:1478:29986:6591	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	9	6	+/+	-/-	.	15	ENST00000650285	ENST00000394480	inversion	0.00015966505818904342	0.0032397408207343412	0.0016997029394616922																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98649675	88184299	chr15:98649675-chr15:88184299	+,-	Arriba	1	0	6		6	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(6)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	1846	6.0	0.0	0.0	0.0									1	5	False	duplicates(6)		FAIL		False	chr15:98649675	chr15:88184299	chr15:98649675-chr15:88184299	.	.	medium	65535	1846	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(6)	AATGAAGTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCA	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	MKSGSGGGSPTSLWGLLFLSAALSLWPTSGE|nt*	LH00995:25:23T55JLT4:1:1372:12197:8398,LH00995:25:23T55JLT4:1:2253:23854:7880,LH00995:25:23T55JLT4:1:2492:3362:15180,LH00995:25:23T55JLT4:2:2467:40568:28198,LH00995:25:23T55JLT4:3:1345:46984:28016,LH00995:25:23T55JLT4:4:1448:7051:19468,LH00995:25:23T55JLT4:4:2354:23555:8987,LH00995:25:23T55JLT4:5:1145:45964:20393,LH00995:25:23T55JLT4:7:1149:22147:13471,LH00995:25:23T55JLT4:7:2293:4624:4279,LH00995:25:23T55JLT4:2:1498:24170:10697,LH00995:25:23T55JLT4:7:1232:29873:8188	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	5	+/+	-/-	.	6	ENST00000650285	ENST00000394480	inversion	1.52587890625e-05	0.002701242571582928	0.001358250680322714																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98708107	88147403	chr15:98708107-chr15:88147403	+,-	Arriba	1	0	3		3	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(2)	medium	inversion	CDS/splice-site	CDS/splice-site	56359	1075	2.0	0.0	0.0	0.0									2	1	False	duplicates(2)		FAIL		False	chr15:98708107	chr15:88147403	chr15:98708107-chr15:88147403	.	.	medium	56359	1075	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(2)	TGTTACCTCTCCACTGTGGACTGGTCCCTGATCCTGGATGCGGTGTCCAATAACTACATTGTGGGGAATAAGCCCCCAAAGGAATGTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTaCG	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	CYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|ktcqvtgsphsrgsssrr*	LH00995:25:23T55JLT4:1:2147:48618:2149,LH00995:25:23T55JLT4:5:2287:9697:4237,LH00995:25:23T55JLT4:3:2142:6517:2569,LH00995:25:23T55JLT4:4:1367:32923:19048,LH00995:25:23T55JLT4:4:1495:45794:28534	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	2	1	+/+	-/-	.	3	ENST00000650285	ENST00000394480	inversion	3.5485530774826566e-05	0.0009293680297397769	0.00048242678025730174																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98708107	88127226	chr15:98708107-chr15:88127226	+,-	Arriba	1	0	1		1	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	56359	2049													0	1	True			FAIL		False	chr15:98708107	chr15:88127226	chr15:98708107-chr15:88127226	.	.	low	56359	2049	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCACAAACCGCTGCCAGAAAA|TTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGG	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	TNRCQK|iDEVSPTPPITVTHKPEEDTF	LH00995:25:23T55JLT4:5:2130:30779:21976	in-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.0004878048780487805	0.00024390243902439024																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98649675	88136040	chr15:98649675-chr15:88136040	+,-	Arriba	1	0	1		1	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	65535	776													0	1	False			FAIL		False	chr15:98649675	chr15:88136040	chr15:98649675-chr15:88136040	.	.	low	65535	776	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|ACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATgGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCT	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	PTSLWGLLFLSAALSLWPTSGE|nqseldqcschqldagecde*	LH00995:25:23T55JLT4:8:1222:28733:20449	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(51%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.001287001287001287	0.0006435006435006435																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98649675	88147403	chr15:98649675-chr15:88147403	+,-	Arriba	1	0	1		1	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	65535	1075	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr15:98649675	chr15:88147403	chr15:98649675-chr15:88147403	.	.	low	65535	1075	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGT	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	SGSGGGSPTSLWGLLFLSAALSLWPTSGE|ktcqvtgsphs	LH00995:25:23T55JLT4:8:2343:3338:24975,LH00995:25:23T55JLT4:8:2343:3346:24989	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	1.52587890625e-05	0.0	7.62939453125e-06																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98948708	88184299	chr15:98948708-chr15:88184299	+,-	Arriba	1	0	1		1	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	38845	1846													0	1	True			FAIL		False	chr15:98948708	chr15:88184299	chr15:98948708-chr15:88184299	.	.	low	38845	1846	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CAGACAACTGTCCTGACATGCT|ACACATAGAGAACTGGCGCAGTCTTCACAtGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAG	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	DNCPDMl|HIENWRSLHmLNAVDMELYTGLQ	LH00995:25:23T55JLT4:8:2162:23118:28604	in-frame	Furin-like_cysteine_rich_region(100%),Protein_kinase_domain(90%),Receptor_L_domain(100%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.0005414185165132648	0.0002707092582566324																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98708107	88184299	chr15:98708107-chr15:88184299	+,-	Arriba	1	0	15		15	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(20)	medium	inversion	CDS/splice-site	CDS/splice-site	56359	1846	20.0	0.0	0.0	0.0									9	6	False	duplicates(20)		FAIL		False	chr15:98708107	chr15:88184299	chr15:98708107-chr15:88184299	.	.	medium	56359	1846	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(20)	TGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGA	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|nt*	LH00995:25:23T55JLT4:1:2434:7229:6689,LH00995:25:23T55JLT4:2:2497:20351:16638,LH00995:25:23T55JLT4:3:1184:14446:6241,LH00995:25:23T55JLT4:3:2218:25480:26138,LH00995:25:23T55JLT4:3:2319:44832:9211,LH00995:25:23T55JLT4:4:2439:11930:26628,LH00995:25:23T55JLT4:6:1397:11048:23588,LH00995:25:23T55JLT4:6:1452:22859:20001,LH00995:25:23T55JLT4:7:1123:30173:17254,LH00995:25:23T55JLT4:7:1266:50794:26516,LH00995:25:23T55JLT4:8:1217:16347:3873,LH00995:25:23T55JLT4:8:1234:37065:20477,LH00995:25:23T55JLT4:8:1457:11137:14578,LH00995:25:23T55JLT4:8:2137:13451:5386,LH00995:25:23T55JLT4:8:2234:10255:20393,LH00995:25:23T55JLT4:8:2234:10263:20379,LH00995:25:23T55JLT4:8:2369:42032:8707,LH00995:25:23T55JLT4:1:1307:5166:12364,LH00995:25:23T55JLT4:1:1414:25367:12910,LH00995:25:23T55JLT4:1:2327:40528:12378,LH00995:25:23T55JLT4:2:1310:10295:23770,LH00995:25:23T55JLT4:2:2170:4802:24737,LH00995:25:23T55JLT4:2:2172:5450:3915,LH00995:25:23T55JLT4:3:1219:4341:9141,LH00995:25:23T55JLT4:3:1254:15538:2583,LH00995:25:23T55JLT4:3:2185:41588:8833,LH00995:25:23T55JLT4:3:2494:14753:1560,LH00995:25:23T55JLT4:4:2414:41232:23910,LH00995:25:23T55JLT4:5:1316:14227:6451,LH00995:25:23T55JLT4:5:2257:26548:12574,LH00995:25:23T55JLT4:6:2164:16598:3802,LH00995:25:23T55JLT4:7:2229:18377:20589,LH00995:25:23T55JLT4:7:2352:35649:24807,LH00995:25:23T55JLT4:8:1408:2497:9730,LH00995:25:23T55JLT4:8:1478:29986:6591	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	9	6	+/+	-/-	.	15	ENST00000650285	ENST00000394480	inversion	0.00015966505818904342	0.0032397408207343412	0.0016997029394616922																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98649675	88184299	chr15:98649675-chr15:88184299	+,-	Arriba	1	0	6		6	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(6)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	1846	6.0	0.0	0.0	0.0									1	5	False	duplicates(6)		FAIL		False	chr15:98649675	chr15:88184299	chr15:98649675-chr15:88184299	.	.	medium	65535	1846	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(6)	AATGAAGTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCA	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	MKSGSGGGSPTSLWGLLFLSAALSLWPTSGE|nt*	LH00995:25:23T55JLT4:1:1372:12197:8398,LH00995:25:23T55JLT4:1:2253:23854:7880,LH00995:25:23T55JLT4:1:2492:3362:15180,LH00995:25:23T55JLT4:2:2467:40568:28198,LH00995:25:23T55JLT4:3:1345:46984:28016,LH00995:25:23T55JLT4:4:1448:7051:19468,LH00995:25:23T55JLT4:4:2354:23555:8987,LH00995:25:23T55JLT4:5:1145:45964:20393,LH00995:25:23T55JLT4:7:1149:22147:13471,LH00995:25:23T55JLT4:7:2293:4624:4279,LH00995:25:23T55JLT4:2:1498:24170:10697,LH00995:25:23T55JLT4:7:1232:29873:8188	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	5	+/+	-/-	.	6	ENST00000650285	ENST00000394480	inversion	1.52587890625e-05	0.002701242571582928	0.001358250680322714																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98708107	88147403	chr15:98708107-chr15:88147403	+,-	Arriba	1	0	3		3	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(2)	medium	inversion	CDS/splice-site	CDS/splice-site	56359	1075	2.0	0.0	0.0	0.0									2	1	False	duplicates(2)		FAIL		False	chr15:98708107	chr15:88147403	chr15:98708107-chr15:88147403	.	.	medium	56359	1075	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(2)	TGTTACCTCTCCACTGTGGACTGGTCCCTGATCCTGGATGCGGTGTCCAATAACTACATTGTGGGGAATAAGCCCCCAAAGGAATGTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTaCG	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	CYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|ktcqvtgsphsrgsssrr*	LH00995:25:23T55JLT4:1:2147:48618:2149,LH00995:25:23T55JLT4:5:2287:9697:4237,LH00995:25:23T55JLT4:3:2142:6517:2569,LH00995:25:23T55JLT4:4:1367:32923:19048,LH00995:25:23T55JLT4:4:1495:45794:28534	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	2	1	+/+	-/-	.	3	ENST00000650285	ENST00000394480	inversion	3.5485530774826566e-05	0.0009293680297397769	0.00048242678025730174																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98708107	88127226	chr15:98708107-chr15:88127226	+,-	Arriba	1	0	1		1	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	56359	2049													0	1	True			FAIL		False	chr15:98708107	chr15:88127226	chr15:98708107-chr15:88127226	.	.	low	56359	2049	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCACAAACCGCTGCCAGAAAA|TTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGG	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	TNRCQK|iDEVSPTPPITVTHKPEEDTF	LH00995:25:23T55JLT4:5:2130:30779:21976	in-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.0004878048780487805	0.00024390243902439024																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98649675	88136040	chr15:98649675-chr15:88136040	+,-	Arriba	1	0	1		1	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	65535	776													0	1	False			FAIL		False	chr15:98649675	chr15:88136040	chr15:98649675-chr15:88136040	.	.	low	65535	776	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|ACCAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCACCCTGACGTGCATgGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCT	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	PTSLWGLLFLSAALSLWPTSGE|nqseldqcschqldagecde*	LH00995:25:23T55JLT4:8:1222:28733:20449	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(51%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.001287001287001287	0.0006435006435006435																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98649675	88147403	chr15:98649675-chr15:88147403	+,-	Arriba	1	0	1		1	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(1)	low	inversion	CDS/splice-site	CDS/splice-site	65535	1075	1.0	0.0	0.0	0.0									1	0	False	duplicates(1)		FAIL		False	chr15:98649675	chr15:88147403	chr15:98649675-chr15:88147403	.	.	low	65535	1075	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(1)	GTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGT	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	SGSGGGSPTSLWGLLFLSAALSLWPTSGE|ktcqvtgsphs	LH00995:25:23T55JLT4:8:2343:3338:24975,LH00995:25:23T55JLT4:8:2343:3346:24989	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	1.52587890625e-05	0.0	7.62939453125e-06																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	IGF1R	NTRK3	98948708	88184299	chr15:98948708-chr15:88184299	+,-	Arriba	1	0	1		1	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	38845	1846													0	1	True			FAIL		False	chr15:98948708	chr15:88184299	chr15:98948708-chr15:88184299	.	.	low	38845	1846	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CAGACAACTGTCCTGACATGCT|ACACATAGAGAACTGGCGCAGTCTTCACAtGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAG	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	DNCPDMl|HIENWRSLHmLNAVDMELYTGLQ	LH00995:25:23T55JLT4:8:2162:23118:28604	in-frame	Furin-like_cysteine_rich_region(100%),Protein_kinase_domain(90%),Receptor_L_domain(100%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.0005414185165132648	0.0002707092582566324																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88184299	chr15:98708107-chr15:88184299	+,-	Arriba	1	0	18		18	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(18)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	3918	18.0	0.0	0.0	0.0									4	14	False	duplicates(18)		FAIL		False	chr15:98708107	chr15:88184299	chr15:98708107-chr15:88184299	.	.	medium	65535	3918	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(18)	AAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	KPMCEKTTINNEYNYRCWTTNRCQK|nt*	LH00995:25:23T55JLT4:1:1110:22123:17268,LH00995:25:23T55JLT4:1:1250:44524:6801,LH00995:25:23T55JLT4:1:1413:29275:20743,LH00995:25:23T55JLT4:1:2112:8661:27105,LH00995:25:23T55JLT4:1:2209:14478:13779,LH00995:25:23T55JLT4:1:2409:12455:20281,LH00995:25:23T55JLT4:1:2437:30723:6577,LH00995:25:23T55JLT4:2:1296:9511:14116,LH00995:25:23T55JLT4:2:2305:45042:3999,LH00995:25:23T55JLT4:2:2465:4940:20968,LH00995:25:23T55JLT4:3:1183:9697:18726,LH00995:25:23T55JLT4:3:1187:34161:8076,LH00995:25:23T55JLT4:3:1213:9810:22397,LH00995:25:23T55JLT4:3:2279:9810:7432,LH00995:25:23T55JLT4:3:2313:39411:2569,LH00995:25:23T55JLT4:4:1248:30650:27133,LH00995:25:23T55JLT4:4:1293:6040:12056,LH00995:25:23T55JLT4:5:1181:25310:21248,LH00995:25:23T55JLT4:5:1344:16492:13709,LH00995:25:23T55JLT4:5:1377:44832:26110,LH00995:25:23T55JLT4:5:2103:41256:23167,LH00995:25:23T55JLT4:5:2185:33498:11579,LH00995:25:23T55JLT4:6:1158:45811:8609,LH00995:25:23T55JLT4:6:2293:17269:2331,LH00995:25:23T55JLT4:8:1222:27883:12616,LH00995:25:23T55JLT4:8:1366:37753:10038,LH00995:25:23T55JLT4:8:2147:3427:6157,LH00995:25:23T55JLT4:1:2161:11833:7684,LH00995:25:23T55JLT4:1:2491:29242:1350,LH00995:25:23T55JLT4:3:2201:21751:22509,LH00995:25:23T55JLT4:3:2366:18960:10052,LH00995:25:23T55JLT4:6:1140:11897:4685,LH00995:25:23T55JLT4:6:1215:10360:22032,LH00995:25:23T55JLT4:6:1392:13871:13989,LH00995:25:23T55JLT4:6:1392:13879:14003,LH00995:25:23T55JLT4:8:1358:21144:20897	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	4	14	+/+	-/-	.	18	ENST00000650285	ENST00000394480	inversion	6.103236241016799e-05	0.003560528992878942	0.0018107806776445552																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98649675	88184299	chr15:98649675-chr15:88184299	+,-	Arriba	1	0	7		7	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(11),mismatches(1)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	3918	11.0	1.0	0.0	0.0									1	6	False	duplicates(11),mismatches(1)		FAIL		False	chr15:98649675	chr15:88184299	chr15:98649675-chr15:88184299	.	.	medium	65535	3918	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(7.0<8.0)	duplicates(11),mismatches(1)	AGTCTGGCTCCGGAGGAGGGTCCCCGACCTCGCTGTGGGGGCTCCTGTTTCTCTCCGCCGCGCTCTCGCTCTGGCCGACGAGTGGAGAAA|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAA	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	SGSGGGSPTSLWGLLFLSAALSLWPTSGE|nt*	LH00995:25:23T55JLT4:1:1116:23353:16596,LH00995:25:23T55JLT4:1:1361:24145:29431,LH00995:25:23T55JLT4:1:2278:32721:20575,LH00995:25:23T55JLT4:2:1147:16233:2191,LH00995:25:23T55JLT4:2:1153:16929:3424,LH00995:25:23T55JLT4:2:1204:51668:8553,LH00995:25:23T55JLT4:2:1248:6849:14634,LH00995:25:23T55JLT4:2:1314:38271:19146,LH00995:25:23T55JLT4:3:1280:46644:26811,LH00995:25:23T55JLT4:5:1492:49184:20505,LH00995:25:23T55JLT4:6:1285:45050:7376,LH00995:25:23T55JLT4:6:1322:44403:28646,LH00995:25:23T55JLT4:6:1324:37615:23392,LH00995:25:23T55JLT4:6:2202:32680:22803,LH00995:25:23T55JLT4:8:2170:51749:3452,LH00995:25:23T55JLT4:8:2201:22649:12406,LH00995:25:23T55JLT4:8:2209:18927:18347,LH00995:25:23T55JLT4:8:2449:7674:11047,LH00995:25:23T55JLT4:3:2132:40301:11958	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	6	+/+	-/-	.	7	ENST00000650285	ENST00000394480	inversion	1.52587890625e-05	0.0015290519877675841	0.0007721553884150421																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88147403	chr15:98708107-chr15:88147403	+,-	Arriba	1	0	4		4	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:medium;duplicates(1),mismatches(1)	medium	inversion	CDS/splice-site	CDS/splice-site	65535	1549	1.0	1.0	0.0	0.0									2	2	False	duplicates(1),mismatches(1)		FAIL		False	chr15:98708107	chr15:88147403	chr15:98708107-chr15:88147403	.	.	medium	65535	1549	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(1),mismatches(1)	GTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AAACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATT___GCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|ktcqvtgsphsrgsssrr*	LH00995:25:23T55JLT4:1:2115:48602:23588,LH00995:25:23T55JLT4:5:1234:19631:27637,LH00995:25:23T55JLT4:6:1341:15708:6549,LH00995:25:23T55JLT4:6:2319:8629:3004,LH00995:25:23T55JLT4:1:2219:15910:13009,LH00995:25:23T55JLT4:8:1491:36394:18585	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(49%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	2	2	+/+	-/-	.	4	ENST00000650285	ENST00000394480	inversion	3.051711247081801e-05	0.0012894906511927789	0.0006600038818317985																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98948708	88184299	chr15:98948708-chr15:88184299	+,-	Arriba	1	0	5		5	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(9)	low	inversion	CDS/splice-site	CDS/splice-site	48801	3918	9.0	0.0	0.0	0.0									0	5	True	duplicates(9)		FAIL		False	chr15:98948708	chr15:88184299	chr15:98948708-chr15:88184299	.	.	low	48801	3918	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(5.0<8.0)	duplicates(9)	CGCCACACTGGCCGAGCAGCCCTACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGACAACTGTCCTGACATGCT|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	ATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMl|HIENWRSLHTLNAVDMELYTGLQKLTIKNSGLRSIQPRAFAKN	LH00995:25:23T55JLT4:2:1482:15214:28842,LH00995:25:23T55JLT4:2:1482:15230:28842,LH00995:25:23T55JLT4:3:1225:4697:21584,LH00995:25:23T55JLT4:3:1274:12294:19833,LH00995:25:23T55JLT4:3:1495:6671:10626,LH00995:25:23T55JLT4:3:2252:15967:14144,LH00995:25:23T55JLT4:5:1270:50915:3802,LH00995:25:23T55JLT4:6:1227:49216:26586,LH00995:25:23T55JLT4:6:2134:6412:13877,LH00995:25:23T55JLT4:6:2383:17633:9183,LH00995:25:23T55JLT4:6:2483:36183:17464,LH00995:25:23T55JLT4:8:1288:41304:6885,LH00995:25:23T55JLT4:8:1296:26063:2261,LH00995:25:23T55JLT4:8:1409:25076:11733	in-frame	Furin-like_cysteine_rich_region(100%),Protein_kinase_domain(90%),Receptor_L_domain(100%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	5	+/+	-/-	.	5	ENST00000650285	ENST00000394480	inversion	0.0	0.0012745347947998981	0.0006372673973999491																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88127226	chr15:98708107-chr15:88127226	+,-	Arriba	1	0	2		2	PASS	in-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	CDS/splice-site	65535	2690	2.0	0.0	0.0	0.0									0	2	True	duplicates(2)		FAIL		False	chr15:98708107	chr15:88127226	chr15:98708107-chr15:88127226	.	.	low	65535	2690	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(2)	CGCTGCTGGACCACAAACCGCTGCCAGAAAA|TTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACACTTTTGGG___GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	RCWTTNRCQK|iDEVSPTPPITVTHKPEEDTFGVSIAVGLAAFACVLLVVLF	LH00995:25:23T55JLT4:1:1330:41952:1645,LH00995:25:23T55JLT4:8:1139:37001:9716,LH00995:25:23T55JLT4:8:1313:15109:19048,LH00995:25:23T55JLT4:8:2401:7003:9519	in-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000650285	ENST00000394480	inversion	0.0	0.0007429420505200594	0.0003714710252600297																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	IGF1R--NTRK3	IGF1R--NTRK3	IGF1R--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	IGF1R	NTRK3	98708107	88126373	chr15:98708107-chr15:88126373	+,-	Arriba	1	0	1		1	PASS	out-of-frame	IGF1R--NTRK3	IGF1R--NTRK3	confidence:low;duplicates(2)	low	inversion	CDS/splice-site	CDS/splice-site	65535	1161	2.0	0.0	0.0	0.0									0	1	False	duplicates(2)		FAIL		False	chr15:98708107	chr15:88126373	chr15:98708107-chr15:88126373	.	.	low	65535	1161	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	CAAACCGCTGCCAGAAAA|GTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGAC	IGF1R	NTRK3	ENSG00000140443	ENSG00000140538	NRCQK|sihsswtccfclcpvggslrhdqqiws	LH00995:25:23T55JLT4:2:2159:46005:13905,LH00995:25:23T55JLT4:4:1448:48076:2527,LH00995:25:23T55JLT4:6:1420:22875:12042	out-of-frame	Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000650285	ENST00000394480	inversion	0.0	0.0008605851979345956	0.0004302925989672978																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100924729	88072599	chr15:100924729-chr15:88072599	+,-	Arriba	1	0	1		1	PASS	out-of-frame	LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	7780	19													1	0	False			FAIL		False	chr15:100924729	chr15:88072599	chr15:100924729-chr15:88072599	.	.	low	7780	19	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GTCGCAAAGACCCCCCAGCATGTACTGGTGTGTGGGGCCGGAGGAGTCAGCTGTGTGTCCAGAACGcGCCATGGAGACGCTTAACG|ATGGCCTGGAGCTTTTGGCTGTCTTGCTTAAATGTGACTCAAAGCAGTTAAAAAATAAAGAAGGAAATAAAATGAAAA	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	SQRPPSMYWCVGPEESAVCPERAMETLN|dglellavllkcdskqlknkegnkmk	LH00995:25:23T55JLT4:2:1133:26030:21514	out-of-frame	|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000388948	ENST00000560739	inversion	0.00012851818532322323	0.0	6.425909266161162e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100919451	88137561	chr15:100919451-chr15:88137561	+,-	Arriba	1	0	1		1	PASS		LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	inversion	5'UTR/splice-site	CDS/splice-site	358	835													0	1				FAIL		False	chr15:100919451	chr15:88137561	chr15:100919451-chr15:88137561	.	.	low	358	835	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGTCCCGGAGCGCCCGCACCCGGCCCCGCCGCCGCCTCAG|GCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCC	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	.	LH00995:25:23T55JLT4:2:1466:34630:10963	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(9%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	5'UTR/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000388948	ENST00000394480	inversion	0.0	0.0011961722488038277	0.0005980861244019139																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100989398	88147941	chr15:100989398-chr15:88147941	+,+	Arriba	1	0	1		1	PASS	out-of-frame	LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	duplication/5'-5'	CDS/splice-site	intron	7722	50													1	0	False			FAIL		False	chr15:100989398	chr15:88147941	chr15:100989398-chr15:88147941	.	.	low	7722	50	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CATCTGCTGAGAAAGTACTTCATTGAAGCCAGTCCCTTGCCCAGCAGTTATCCGGGAAAAACA|GATGTACAGGGGAAAGGAGCAGCCATTAGTCTTCTGGATAAAAGAAGAAACACG	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	HLLRKYFIEASPLPSSYPGKT|dvqgkgaaislldkrrn	LH00995:25:23T55JLT4:4:2313:11711:9295	out-of-frame	Ankyrin_repeats_(3_copies)(100%)|	CDS/splice-site	intron	1	0	+/+	-/+	.	1	ENST00000388948	.	duplication/5'-5'	0.00012948336138806163	0.0	6.474168069403081e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100924729	88184299	chr15:100924729-chr15:88184299	+,-	Arriba	1	0	1		1	PASS	out-of-frame	LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	7780	1846													0	1	False			FAIL		False	chr15:100924729	chr15:88184299	chr15:100924729-chr15:88184299	.	.	low	7780	1846	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCAGAACGcGCCATGGAGACGCTTAACG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACAC	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	PERAMETLN|dt*	LH00995:25:23T55JLT4:8:2493:33020:6577	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000388948	ENST00000394480	inversion	0.0	0.0005414185165132648	0.0002707092582566324																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100924729	88072599	chr15:100924729-chr15:88072599	+,-	Arriba	1	0	1		1	PASS	out-of-frame	LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	7780	19													1	0	False			FAIL		False	chr15:100924729	chr15:88072599	chr15:100924729-chr15:88072599	.	.	low	7780	19	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GTCGCAAAGACCCCCCAGCATGTACTGGTGTGTGGGGCCGGAGGAGTCAGCTGTGTGTCCAGAACGcGCCATGGAGACGCTTAACG|ATGGCCTGGAGCTTTTGGCTGTCTTGCTTAAATGTGACTCAAAGCAGTTAAAAAATAAAGAAGGAAATAAAATGAAAA	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	SQRPPSMYWCVGPEESAVCPERAMETLN|dglellavllkcdskqlknkegnkmk	LH00995:25:23T55JLT4:2:1133:26030:21514	out-of-frame	|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000388948	ENST00000560739	inversion	0.00012851818532322323	0.0	6.425909266161162e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100919451	88137561	chr15:100919451-chr15:88137561	+,-	Arriba	1	0	1		1	PASS		LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	inversion	5'UTR/splice-site	CDS/splice-site	358	835													0	1				FAIL		False	chr15:100919451	chr15:88137561	chr15:100919451-chr15:88137561	.	.	low	358	835	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCGTCCCGGAGCGCCCGCACCCGGCCCCGCCGCCGCCTCAG|GCAGTTGGAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCTCAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCC	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	.	LH00995:25:23T55JLT4:2:1466:34630:10963	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(9%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	5'UTR/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000388948	ENST00000394480	inversion	0.0	0.0011961722488038277	0.0005980861244019139																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100989398	88147941	chr15:100989398-chr15:88147941	+,+	Arriba	1	0	1		1	PASS	out-of-frame	LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	duplication/5'-5'	CDS/splice-site	intron	7722	50													1	0	False			FAIL		False	chr15:100989398	chr15:88147941	chr15:100989398-chr15:88147941	.	.	low	7722	50	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CATCTGCTGAGAAAGTACTTCATTGAAGCCAGTCCCTTGCCCAGCAGTTATCCGGGAAAAACA|GATGTACAGGGGAAAGGAGCAGCCATTAGTCTTCTGGATAAAAGAAGAAACACG	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	HLLRKYFIEASPLPSSYPGKT|dvqgkgaaislldkrrn	LH00995:25:23T55JLT4:4:2313:11711:9295	out-of-frame	Ankyrin_repeats_(3_copies)(100%)|	CDS/splice-site	intron	1	0	+/+	-/+	.	1	ENST00000388948	.	duplication/5'-5'	0.00012948336138806163	0.0	6.474168069403081e-05																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	LRRK1--NTRK3	LRRK1--NTRK3	LRRK1--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	LRRK1	NTRK3	100924729	88184299	chr15:100924729-chr15:88184299	+,-	Arriba	1	0	1		1	PASS	out-of-frame	LRRK1--NTRK3	LRRK1--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	7780	1846													0	1	False			FAIL		False	chr15:100924729	chr15:88184299	chr15:100924729-chr15:88184299	.	.	low	7780	1846	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCAGAACGcGCCATGGAGACGCTTAACG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACAC	LRRK1	NTRK3	ENSG00000154237	ENSG00000140538	PERAMETLN|dt*	LH00995:25:23T55JLT4:8:2493:33020:6577	out-of-frame	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000388948	ENST00000394480	inversion	0.0	0.0005414185165132648	0.0002707092582566324																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MAN2A2--NTRK3	MAN2A2--NTRK3	MAN2A2--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	MAN2A2	NTRK3	90906497	88184299	chr15:90906497-chr15:88184299	+,-	Arriba	1	0	2		2	PASS	out-of-frame	MAN2A2--NTRK3	MAN2A2--NTRK3	confidence:low;duplicates(1),mismappers(1),mismatches(1)	low	inversion	CDS/splice-site	CDS/splice-site	7995	1846	1.0	1.0	1.0	0.0									0	2	False	duplicates(1),mismappers(1),mismatches(1)		FAIL		False	chr15:90906497	chr15:88184299	chr15:90906497-chr15:88184299	.	.	low	7995	1846	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(1),mismappers(1),mismatches(1)	TGATTGACCAGCTCATCGAAGGACACCAGTGGCTGGAGAGAAATCTTG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATAT___AAACCTGTCA	MAN2A2	NTRK3	ENSG00000196547	ENSG00000140538	IDQLIEGHQWLERNL|dt*	LH00995:25:23T55JLT4:1:1236:30302:12882,LH00995:25:23T55JLT4:2:1288:40423:7796,LH00995:25:23T55JLT4:2:2267:4883:1673,LH00995:25:23T55JLT4:3:1466:25828:15222,LH00995:25:23T55JLT4:5:1372:42704:29067	out-of-frame	Glycosyl_hydrolases_family_38_N-terminal_domain(33%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000559717	ENST00000394480	inversion	0.0	0.0010822510822510823	0.0005411255411255411																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MAN2A2--NTRK3	MAN2A2--NTRK3	MAN2A2--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	MAN2A2	NTRK3	90913755	88072599	chr15:90913755-chr15:88072599	+,-	Arriba	1	0	1		1	PASS	out-of-frame	MAN2A2--NTRK3	MAN2A2--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4462	19													1	0	False			FAIL		False	chr15:90913755	chr15:88072599	chr15:90913755-chr15:88072599	.	.	low	4462	19	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCAGGACGCACAGAAGCGCCTCACGCTGCACACTGCCCAGGCCCTGGGTGTCTCTAGCCTCAAAGATG|ATGGCCTGGAGCTTTTGGCTGTCTTGCTTAAATGTGAC	MAN2A2	NTRK3	ENSG00000196547	ENSG00000140538	QDAQKRLTLHTAQALGVSSLKD|dglellavllkc	LH00995:25:23T55JLT4:1:1255:4568:19062	out-of-frame	Alpha_mannosidase_middle_domain(100%),Glycosyl_hydrolases_family_38_C-terminal_domain(91%),Glycosyl_hydrolases_family_38_N-terminal_domain(100%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000559717	ENST00000560017	inversion	0.00022406453058480843	0.0	0.00011203226529240422																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MAN2A2--NTRK3	MAN2A2--NTRK3	MAN2A2--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	MAN2A2	NTRK3	90906497	88184299	chr15:90906497-chr15:88184299	+,-	Arriba	1	0	2		2	PASS	out-of-frame	MAN2A2--NTRK3	MAN2A2--NTRK3	confidence:low;duplicates(1),mismappers(1),mismatches(1)	low	inversion	CDS/splice-site	CDS/splice-site	7995	1846	1.0	1.0	1.0	0.0									0	2	False	duplicates(1),mismappers(1),mismatches(1)		FAIL		False	chr15:90906497	chr15:88184299	chr15:90906497-chr15:88184299	.	.	low	7995	1846	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(1),mismappers(1),mismatches(1)	TGATTGACCAGCTCATCGAAGGACACCAGTGGCTGGAGAGAAATCTTG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATAT___AAACCTGTCA	MAN2A2	NTRK3	ENSG00000196547	ENSG00000140538	IDQLIEGHQWLERNL|dt*	LH00995:25:23T55JLT4:1:1236:30302:12882,LH00995:25:23T55JLT4:2:1288:40423:7796,LH00995:25:23T55JLT4:2:2267:4883:1673,LH00995:25:23T55JLT4:3:1466:25828:15222,LH00995:25:23T55JLT4:5:1372:42704:29067	out-of-frame	Glycosyl_hydrolases_family_38_N-terminal_domain(33%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	2	+/+	-/-	.	2	ENST00000559717	ENST00000394480	inversion	0.0	0.0010822510822510823	0.0005411255411255411																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MAN2A2--NTRK3	MAN2A2--NTRK3	MAN2A2--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	MAN2A2	NTRK3	90913755	88072599	chr15:90913755-chr15:88072599	+,-	Arriba	1	0	1		1	PASS	out-of-frame	MAN2A2--NTRK3	MAN2A2--NTRK3	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	4462	19													1	0	False			FAIL		False	chr15:90913755	chr15:88072599	chr15:90913755-chr15:88072599	.	.	low	4462	19	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCAGGACGCACAGAAGCGCCTCACGCTGCACACTGCCCAGGCCCTGGGTGTCTCTAGCCTCAAAGATG|ATGGCCTGGAGCTTTTGGCTGTCTTGCTTAAATGTGAC	MAN2A2	NTRK3	ENSG00000196547	ENSG00000140538	QDAQKRLTLHTAQALGVSSLKD|dglellavllkc	LH00995:25:23T55JLT4:1:1255:4568:19062	out-of-frame	Alpha_mannosidase_middle_domain(100%),Glycosyl_hydrolases_family_38_C-terminal_domain(91%),Glycosyl_hydrolases_family_38_N-terminal_domain(100%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000559717	ENST00000560017	inversion	0.00022406453058480843	0.0	0.00011203226529240422																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MIR1268A--NTRK3	MIR1268A--NTRK3	MIR1268A--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	MIR1268A	NTRK3	22239596	88184299	chr15:22239596-chr15:88184299	-,-	Arriba	1	0	14		14	PASS		MIR1268A--NTRK3	MIR1268A--NTRK3	confidence:medium;duplicates(20),mismatches(2)	medium	duplication	intergenic	CDS/splice-site	7	3918	20.0	2.0	0.0	0.0									4	10		duplicates(20),mismatches(2)		FAIL		False	chr15:22239596	chr15:88184299	chr15:22239596-chr15:88184299	.	.	medium	7	3918	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(20),mismatches(2)	GTCAGCACCAGGGACAGATTGCTCAAGAATCTGTGTGCTCCAAGGCACAAGAGGGGTGCTGTCTCCTTTCCTGGAGTTCCGTCTCATGCCTACGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCC	MIR1268A(14267),AC025884.2(18542)	NTRK3	.	ENSG00000140538	.	LH00995:25:23T55JLT4:1:1366:12439:7025,LH00995:25:23T55JLT4:1:2366:21120:5330,LH00995:25:23T55JLT4:2:2463:37049:5904,LH00995:25:23T55JLT4:3:1271:46862:4573,LH00995:25:23T55JLT4:3:2240:13345:15096,LH00995:25:23T55JLT4:3:2253:49945:4391,LH00995:25:23T55JLT4:1:1104:30399:5176,LH00995:25:23T55JLT4:1:1104:30407:5162,LH00995:25:23T55JLT4:1:1174:42939:17703,LH00995:25:23T55JLT4:1:1217:36232:16960,LH00995:25:23T55JLT4:1:1494:42655:20603,LH00995:25:23T55JLT4:1:2207:28304:24611,LH00995:25:23T55JLT4:1:2303:21743:14844,LH00995:25:23T55JLT4:2:1171:41499:6521,LH00995:25:23T55JLT4:3:1101:34525:5736,LH00995:25:23T55JLT4:3:2179:6137:7712,LH00995:25:23T55JLT4:3:2335:38918:14242,LH00995:25:23T55JLT4:3:2335:38926:14228,LH00995:25:23T55JLT4:4:1252:48642:22621,LH00995:25:23T55JLT4:4:1428:48618:29613,LH00995:25:23T55JLT4:4:1428:48634:29613,LH00995:25:23T55JLT4:5:1155:34727:25844,LH00995:25:23T55JLT4:5:1235:26184:2163,LH00995:25:23T55JLT4:5:1496:19558:7838,LH00995:25:23T55JLT4:5:2270:47647:2822,LH00995:25:23T55JLT4:6:1429:36386:17030,LH00995:25:23T55JLT4:8:1225:50195:4433,LH00995:25:23T55JLT4:8:1257:49637:13303,LH00995:25:23T55JLT4:8:1257:49653:13303,LH00995:25:23T55JLT4:8:2121:46320:19468,LH00995:25:23T55JLT4:8:2167:21524:2247,LH00995:25:23T55JLT4:8:2241:23571:7193,LH00995:25:23T55JLT4:8:2348:22875:10809,LH00995:25:23T55JLT4:8:2349:4220:21206,LH00995:25:23T55JLT4:8:2387:36078:8202,LH00995:25:23T55JLT4:8:2487:45042:2934	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	intergenic	CDS/splice-site	4	10	./-	-/-	.	14	.	ENST00000394480	duplication	0.36363636363636365	0.0025458248472505093	0.18309109424180708																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MIR1268A--NTRK3	MIR1268A--NTRK3	MIR1268A--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	MIR1268A	NTRK3	22239596	88184299	chr15:22239596-chr15:88184299	-,-	Arriba	1	0	6		6	PASS		MIR1268A--NTRK3	MIR1268A--NTRK3	confidence:medium;duplicates(4)	medium	duplication	intergenic	CDS/splice-site	4	1846	4.0	0.0	0.0	0.0									3	3		duplicates(4)		FAIL		False	chr15:22239596	chr15:88184299	chr15:22239596-chr15:88184299	.	.	medium	4	1846	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(4)	CCTGGTTGGGCAGCCCTATGGCCCTGTGGAGCTGAGATGCCAGCTTTAGATGGGGGGACTTACAAtACGGGCTTTCCCTTCCCCAGTGGAACAGAAGGCGCCGGCGAGAGGCCCTCCTTGTCAGCACCAGGGACAGATTGCTCAAGAATCTGTGTGCTCCAAGGCACAAGAGGGGTGCTGTCTCCTTTCCTGGAGTTCCGTCTCATGCCTACGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCC	MIR1268A(14267),AC025884.2(18542)	NTRK3	.	ENSG00000140538	.	LH00995:25:23T55JLT4:1:2366:5320:18151,LH00995:25:23T55JLT4:2:2403:1000:22523,LH00995:25:23T55JLT4:6:1273:24396:16105,LH00995:25:23T55JLT4:7:1372:9948:27988,LH00995:25:23T55JLT4:5:1185:44508:23980,LH00995:25:23T55JLT4:5:1407:4527:5232,LH00995:25:23T55JLT4:5:2442:27317:19062,LH00995:25:23T55JLT4:7:1352:21371:22719,LH00995:25:23T55JLT4:7:1352:21379:22733,LH00995:25:23T55JLT4:8:1288:15069:16848	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	intergenic	CDS/splice-site	3	3	./-	-/-	.	6	.	ENST00000394480	duplication	0.42857142857142855	0.0016224986479177934	0.21509696360967318																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MIR1268A--NTRK3	MIR1268A--NTRK3	MIR1268A--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr15	MIR1268A	NTRK3	22239596	88184299	chr15:22239596-chr15:88184299	-,-	Arriba	1	0	6		6	PASS		MIR1268A--NTRK3	MIR1268A--NTRK3	confidence:medium;duplicates(4)	medium	duplication	intergenic	CDS/splice-site	4	1846	4.0	0.0	0.0	0.0									3	3		duplicates(4)		FAIL		False	chr15:22239596	chr15:88184299	chr15:22239596-chr15:88184299	.	.	medium	4	1846	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(4)	CCTGGTTGGGCAGCCCTATGGCCCTGTGGAGCTGAGATGCCAGCTTTAGATGGGGGGACTTACAAtACGGGCTTTCCCTTCCCCAGTGGAACAGAAGGCGCCGGCGAGAGGCCCTCCTTGTCAGCACCAGGGACAGATTGCTCAAGAATCTGTGTGCTCCAAGGCACAAGAGGGGTGCTGTCTCCTTTCCTGGAGTTCCGTCTCATGCCTACGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCC	MIR1268A(14267),AC025884.2(18542)	NTRK3	.	ENSG00000140538	.	LH00995:25:23T55JLT4:1:2366:5320:18151,LH00995:25:23T55JLT4:2:2403:1000:22523,LH00995:25:23T55JLT4:6:1273:24396:16105,LH00995:25:23T55JLT4:7:1372:9948:27988,LH00995:25:23T55JLT4:5:1185:44508:23980,LH00995:25:23T55JLT4:5:1407:4527:5232,LH00995:25:23T55JLT4:5:2442:27317:19062,LH00995:25:23T55JLT4:7:1352:21371:22719,LH00995:25:23T55JLT4:7:1352:21379:22733,LH00995:25:23T55JLT4:8:1288:15069:16848	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	intergenic	CDS/splice-site	3	3	./-	-/-	.	6	.	ENST00000394480	duplication	0.42857142857142855	0.0016224986479177934	0.21509696360967318																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MIR1268A--NTRK3	MIR1268A--NTRK3	MIR1268A--NTRK3	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	MIR1268A	NTRK3	22239596	88184299	chr15:22239596-chr15:88184299	-,-	Arriba	1	0	14		14	PASS		MIR1268A--NTRK3	MIR1268A--NTRK3	confidence:medium;duplicates(20),mismatches(2)	medium	duplication	intergenic	CDS/splice-site	7	3918	20.0	2.0	0.0	0.0									4	10		duplicates(20),mismatches(2)		FAIL		False	chr15:22239596	chr15:88184299	chr15:22239596-chr15:88184299	.	.	medium	7	3918	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(20),mismatches(2)	GTCAGCACCAGGGACAGATTGCTCAAGAATCTGTGTGCTCCAAGGCACAAGAGGGGTGCTGTCTCCTTTCCTGGAGTTCCGTCTCATGCCTACGTTTCAG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCC	MIR1268A(14267),AC025884.2(18542)	NTRK3	.	ENSG00000140538	.	LH00995:25:23T55JLT4:1:1366:12439:7025,LH00995:25:23T55JLT4:1:2366:21120:5330,LH00995:25:23T55JLT4:2:2463:37049:5904,LH00995:25:23T55JLT4:3:1271:46862:4573,LH00995:25:23T55JLT4:3:2240:13345:15096,LH00995:25:23T55JLT4:3:2253:49945:4391,LH00995:25:23T55JLT4:1:1104:30399:5176,LH00995:25:23T55JLT4:1:1104:30407:5162,LH00995:25:23T55JLT4:1:1174:42939:17703,LH00995:25:23T55JLT4:1:1217:36232:16960,LH00995:25:23T55JLT4:1:1494:42655:20603,LH00995:25:23T55JLT4:1:2207:28304:24611,LH00995:25:23T55JLT4:1:2303:21743:14844,LH00995:25:23T55JLT4:2:1171:41499:6521,LH00995:25:23T55JLT4:3:1101:34525:5736,LH00995:25:23T55JLT4:3:2179:6137:7712,LH00995:25:23T55JLT4:3:2335:38918:14242,LH00995:25:23T55JLT4:3:2335:38926:14228,LH00995:25:23T55JLT4:4:1252:48642:22621,LH00995:25:23T55JLT4:4:1428:48618:29613,LH00995:25:23T55JLT4:4:1428:48634:29613,LH00995:25:23T55JLT4:5:1155:34727:25844,LH00995:25:23T55JLT4:5:1235:26184:2163,LH00995:25:23T55JLT4:5:1496:19558:7838,LH00995:25:23T55JLT4:5:2270:47647:2822,LH00995:25:23T55JLT4:6:1429:36386:17030,LH00995:25:23T55JLT4:8:1225:50195:4433,LH00995:25:23T55JLT4:8:1257:49637:13303,LH00995:25:23T55JLT4:8:1257:49653:13303,LH00995:25:23T55JLT4:8:2121:46320:19468,LH00995:25:23T55JLT4:8:2167:21524:2247,LH00995:25:23T55JLT4:8:2241:23571:7193,LH00995:25:23T55JLT4:8:2348:22875:10809,LH00995:25:23T55JLT4:8:2349:4220:21206,LH00995:25:23T55JLT4:8:2387:36078:8202,LH00995:25:23T55JLT4:8:2487:45042:2934	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	intergenic	CDS/splice-site	4	10	./-	-/-	.	14	.	ENST00000394480	duplication	0.36363636363636365	0.0025458248472505093	0.18309109424180708																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--NGRN	NGRN--MYC	MYC--NGRN	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	NGRN	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	428		428	PASS		NGRN--MYC	MYC--NGRN	confidence:high;duplicates(185)	high	translocation	CDS/splice-site	intergenic	19112	314	185.0	0.0	0.0	0.0									235	193		duplicates(185)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	19112	314	downstream	downstream	0		duplicates(185)	CTTCCCCCAGCACCCTGAAACGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATT	NGRN	MYC(4688),PVT1(46887)	ENSG00000182768	.	.	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Neugrin(8%)|	CDS/splice-site	intergenic	235	193	+/+	./-	.	428	ENST00000331497	.	translocation	0.012146586034010441	0.3806706114398422	0.19640859873692632																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--NGRN	NGRN--MYC	MYC--NGRN	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr8	NGRN	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	325		325	PASS		NGRN--MYC	MYC--NGRN	confidence:high;duplicates(124),mismatches(1)	high	translocation	CDS/splice-site	intergenic	18064	210	124.0	1.0	0.0	0.0									182	143		duplicates(124),mismatches(1)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	18064	210	downstream	downstream	0		duplicates(124),mismatches(1)	CTCTTCCCCCAGCACCCTGAAACGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATTCA	NGRN	MYC(4688),PVT1(46887)	ENSG00000182768	.	.	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Neugrin(8%)|	CDS/splice-site	intergenic	182	143	+/+	./-	.	325	ENST00000331497	.	translocation	0.009974788994848187	0.40509915014164305	0.2075369695682456																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--NGRN	NGRN--MYC	MYC--NGRN	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr15	chr8	NGRN	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	325		325	PASS		NGRN--MYC	MYC--NGRN	confidence:high;duplicates(124),mismatches(1)	high	translocation	CDS/splice-site	intergenic	18064	210	124.0	1.0	0.0	0.0									182	143		duplicates(124),mismatches(1)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	18064	210	downstream	downstream	0		duplicates(124),mismatches(1)	CTCTTCCCCCAGCACCCTGAAACGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATTCA	NGRN	MYC(4688),PVT1(46887)	ENSG00000182768	.	.	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Neugrin(8%)|	CDS/splice-site	intergenic	182	143	+/+	./-	.	325	ENST00000331497	.	translocation	0.009974788994848187	0.40509915014164305	0.2075369695682456																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--NGRN	NGRN--MYC	MYC--NGRN	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr8	NGRN	MYC	90266398	127747639	chr15:90266398-chr8:127747639	+,-	Arriba	1	0	428		428	PASS		NGRN--MYC	MYC--NGRN	confidence:high;duplicates(185)	high	translocation	CDS/splice-site	intergenic	19112	314	185.0	0.0	0.0	0.0									235	193		duplicates(185)		PASS		False	chr15:90266398	chr8:127747639	chr15:90266398-chr8:127747639	.	.	high	19112	314	downstream	downstream	0		duplicates(185)	CTTCCCCCAGCACCCTGAAACGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|TTGAGTCTTGAAAGGTGGTTGAGAACTTTGCTCCTGCTTCCTCGGCTACTCATGCTCCAACATCCTTCACTCCATCAAAATGGGTCTTTATTCAGCCATT	NGRN	MYC(4688),PVT1(46887)	ENSG00000182768	.	.	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3T55JLT4:5:2216:18798:22439,LH00995:25:23T55JLT4:5:2221:21937:21878,LH00995:25:23T55JLT4:5:2249:29663:17380,LH00995:25:23T55JLT4:5:2282:6938:22271,LH00995:25:23T55JLT4:5:2283:31904:1757,LH00995:25:23T55JLT4:5:2289:48828:18655,LH00995:25:23T55JLT4:5:2305:46757:7278,LH00995:25:23T55JLT4:5:2312:31386:26755,LH00995:25:23T55JLT4:5:2315:51967:11621,LH00995:25:23T55JLT4:5:2357:7156:4433,LH00995:25:23T55JLT4:5:2363:35164:7600,LH00995:25:23T55JLT4:5:2373:13070:14003,LH00995:25:23T55JLT4:5:2373:13086:14003,LH00995:25:23T55JLT4:5:2386:15724:22663,LH00995:25:23T55JLT4:5:2411:21670:7235,LH00995:25:23T55JLT4:5:2414:5951:16722,LH00995:25:23T55JLT4:5:2430:48238:1238,LH00995:25:23T55JLT4:5:2458:36192:15937,LH00995:25:23T55JLT4:5:2463:17528:6591,LH00995:25:23T55JLT4:5:2469:48100:25185,LH00995:25:23T55JLT4:5:2482:11994:10486,LH00995:25:23T55JLT4:5:2490:28603:6409,LH00995:25:23T55JLT4:6:1115:45228:19174,LH00995:25:23T55JLT4:6:1115:45236:19160,LH00995:25:23T55JLT4:6:1122:1890:7446,LH00995:25:23T55JLT4:6:1201:13256:27665,LH00995:25:23T55JLT4:6:1203:26265:10038,LH00995:25:23T55JLT4:6:1205:35334:1084,LH00995:25:23T55JLT4:6:1245:14721:16105,LH00995:25:23T55JLT4:6:1249:3338:14830,LH00995:25:23T55JLT4:6:1279:20335:11285,LH00995:25:23T55JLT4:6:1298:17059:12112,LH00995:25:23T55JLT4:6:1346:40447:9155,LH00995:25:23T55JLT4:6:1346:40463:9155,LH00995:25:23T55JLT4:6:1354:25723:26082,LH00995:25:23T55JLT4:6:1370:47477:27161,LH00995:25:23T55JLT4:6:1378:6962:11495,LH00995:25:23T55JLT4:6:1385:29453:25760,LH00995:25:23T55JLT4:6:1390:41863:16287,LH00995:25:23T55JLT4:6:1392:20877:25423,LH00995:25:23T55JLT4:6:1408:47437:13359,LH00995:25:23T55JLT4:6:1408:47445:13345,LH00995:25:23T55JLT4:6:1454:4309:28030,LH00995:25:23T55JLT4:6:1478:23555:1869,LH00995:25:23T55JLT4:6:1482:43246:4419,LH00995:25:23T55JLT4:6:1482:49710:6227,LH00995:25:23T55JLT4:6:1490:32850:15447,LH00995:25:23T55JLT4:6:1495:32923:27287,LH00995:25:23T55JLT4:6:2104:40188:7390,LH00995:25:23T55JLT4:6:2158:14397:13779,LH00995:25:23T55JLT4:6:2177:18669:9912,LH00995:25:23T55JLT4:6:2190:21759:23812,LH00995:25:23T55JLT4:6:2206:23199:27735,LH00995:25:23T55JLT4:6:2221:14324:13821,LH00995:25:23T55JLT4:6:2257:34404:18894,LH00995:25:23T55JLT4:6:2260:13531:24302,LH00995:25:23T55JLT4:6:2277:23223:21192,LH00995:25:23T55JLT4:6:2294:38327:19636,LH00995:25:23T55JLT4:6:2319:2141:10234,LH00995:25:23T55JLT4:6:2333:44031:26572,LH00995:25:23T55JLT4:6:2340:15748:23125,LH00995:25:23T55JLT4:6:2341:30561:23055,LH00995:25:23T55JLT4:6:2356:49912:12574,LH00995:25:23T55JLT4:6:2367:26508:17520,LH00995:25:23T55JLT4:6:2367:26516:17535,LH00995:25:23T55JLT4:6:2398:25966:17843,LH00995:25:23T55JLT4:6:2457:25594:22467,LH00995:25:23T55JLT4:6:2470:8758:15054,LH00995:25:23T55JLT4:6:2482:22819:10430,LH00995:25:23T55JLT4:8:1103:41596:12826,LH00995:25:23T55JLT4:8:1121:37583:8875,LH00995:25:23T55JLT4:8:1131:40156:7109,LH00995:25:23T55JLT4:8:1135:38165:8539,LH00995:25:23T55JLT4:8:1137:17342:28212,LH00995:25:23T55JLT4:8:1138:3289:6591,LH00995:25:23T55JLT4:8:1155:37955:1252,LH00995:25:23T55JLT4:8:1165:15303:10781,LH00995:25:23T55JLT4:8:1197:10150:25507,LH00995:25:23T55JLT4:8:1228:49936:13877,LH00995:25:23T55JLT4:8:1246:45673:8539,LH00995:25:23T55JLT4:8:1251:30043:16722,LH00995:25:23T55JLT4:8:1274:10643:21150,LH00995:25:23T55JLT4:8:1284:51927:20155,LH00995:25:23T55JLT4:8:1285:26540:8721,LH00995:25:23T55JLT4:8:1316:10643:5512,LH00995:25:23T55JLT4:8:1332:11663:4055,LH00995:25:23T55JLT4:8:1363:13548:28506,LH00995:25:23T55JLT4:8:1411:32163:4139,LH00995:25:23T55JLT4:8:1411:32179:4139,LH00995:25:23T55JLT4:8:1411:36539:22060,LH00995:25:23T55JLT4:8:1427:20416:22243,LH00995:25:23T55JLT4:8:1431:41450:8342,LH00995:25:23T55JLT4:8:1436:29250:26474,LH00995:25:23T55JLT4:8:1465:24866:13191,LH00995:25:23T55JLT4:8:1469:16104:7123,LH00995:25:23T55JLT4:8:1475:25343:17408,LH00995:25:23T55JLT4:8:1495:15635:9365,LH00995:25:23T55JLT4:8:1495:16630:28352,LH00995:25:23T55JLT4:8:2147:21136:20043,LH00995:25:23T55JLT4:8:2184:1938:23812,LH00995:25:23T55JLT4:8:2204:22900:11719,LH00995:25:23T55JLT4:8:2259:5725:10388,LH00995:25:23T55JLT4:8:2308:15902:12602,LH00995:25:23T55JLT4:8:2334:41021:17745,LH00995:25:23T55JLT4:8:2347:17892:16554,LH00995:25:23T55JLT4:8:2354:15813:18950,LH00995:25:23T55JLT4:8:2354:7877:23167	.	Neugrin(8%)|	CDS/splice-site	intergenic	235	193	+/+	./-	.	428	ENST00000331497	.	translocation	0.012146586034010441	0.3806706114398422	0.19640859873692632																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--PCAT1	PCAT1--MYC	MYC--PCAT1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr8	chr8	PCAT1	MYC	126938310	127738248	chr8:126938310-chr8:127738248	+,+	Arriba	1	0	4		4	PASS		PCAT1--MYC	MYC--PCAT1	confidence:medium;duplicates(2)	medium	deletion	exon/splice-site	CDS/splice-site	4	65535	2.0	0.0	0.0	0.0									1	3		duplicates(2)		FAIL		False	chr8:126938310	chr8:127738248	chr8:126938310-chr8:127738248	.	.	medium	4	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(2)	CTTCCAGCGGGAG___AGACCAGGAACTGCATTTGGATTTAAAGAAACAAAACTTTCTGGCACCTACTGTG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTT	PCAT1	MYC	ENSG00000253438	ENSG00000136997	.	LH00995:25:23T55JLT4:2:2451:50754:22327,LH00995:25:23T55JLT4:6:2101:21824:7530,LH00995:25:23T55JLT4:2:2323:25497:16554,LH00995:25:23T55JLT4:3:2190:13386:16540,LH00995:25:23T55JLT4:3:2234:30666:7263,LH00995:25:23T55JLT4:8:1126:33797:17254	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	exon/splice-site	CDS/splice-site	1	3	+/+	+/+	.	4	ENST00000646670	ENST00000621592	deletion	0.2	4.577497024626934e-05	0.10002288748512314																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--PCAT1	PCAT1--MYC	MYC--PCAT1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr8	chr8	PCAT1	MYC	126938310	127738251	chr8:126938310-chr8:127738251	+,+	Arriba	1	0	3		3	PASS		PCAT1--MYC	MYC--PCAT1	confidence:medium	medium	deletion	exon/splice-site	CDS/splice-site	4	65535													2	1				FAIL		False	chr8:126938310	chr8:127738251	chr8:126938310-chr8:127738251	.	.	medium	4	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	GAACATACTGGCCCCCAG___AGACCAGGAACTGCATTTGGATTTAAAGAAACAAAACTTTCTGGCACCTACTGTG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTAC	PCAT1	MYC	ENSG00000253438	ENSG00000136997	.	LH00995:25:23T55JLT4:5:2198:23531:17661,LH00995:25:23T55JLT4:6:1273:11994:4965,LH00995:25:23T55JLT4:1:2166:34760:25199	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	exon/splice-site	CDS/splice-site	2	1	+/+	+/+	.	3	ENST00000646670	ENST00000524013	deletion	0.3333333333333333	1.52587890625e-05	0.1666742960611979																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--PCAT1	PCAT1--MYC	MYC--PCAT1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr8	chr8	PCAT1	MYC	127399018	127738248	chr8:127399018-chr8:127738248	+,+	Arriba	1	0	1		1	PASS		PCAT1--MYC	MYC--PCAT1	confidence:low	low	deletion/read-through	exon/splice-site	CDS/splice-site	1	65535													1	0				FAIL		False	chr8:127399018	chr8:127738248	chr8:127399018-chr8:127738248	.	.	low	1	65535	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTC	PCAT1	MYC	ENSG00000253438	ENSG00000136997	.	LH00995:25:23T55JLT4:5:2451:33708:2359	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	exon/splice-site	CDS/splice-site	1	0	+/+	+/+	.	1	ENST00000645215	ENST00000621592	deletion/read-through	0.5	0.0	0.25																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--PCAT1	PCAT1--MYC	MYC--PCAT1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr8	chr8	PCAT1	MYC	126938310	127738248	chr8:126938310-chr8:127738248	+,+	Arriba	1	0	4		4	PASS		PCAT1--MYC	MYC--PCAT1	confidence:medium;duplicates(2)	medium	deletion	exon/splice-site	CDS/splice-site	4	65535	2.0	0.0	0.0	0.0									1	3		duplicates(2)		FAIL		False	chr8:126938310	chr8:127738248	chr8:126938310-chr8:127738248	.	.	medium	4	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(2)	CTTCCAGCGGGAG___AGACCAGGAACTGCATTTGGATTTAAAGAAACAAAACTTTCTGGCACCTACTGTG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTT	PCAT1	MYC	ENSG00000253438	ENSG00000136997	.	LH00995:25:23T55JLT4:2:2451:50754:22327,LH00995:25:23T55JLT4:6:2101:21824:7530,LH00995:25:23T55JLT4:2:2323:25497:16554,LH00995:25:23T55JLT4:3:2190:13386:16540,LH00995:25:23T55JLT4:3:2234:30666:7263,LH00995:25:23T55JLT4:8:1126:33797:17254	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	exon/splice-site	CDS/splice-site	1	3	+/+	+/+	.	4	ENST00000646670	ENST00000621592	deletion	0.2	4.577497024626934e-05	0.10002288748512314																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--PCAT1	PCAT1--MYC	MYC--PCAT1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr8	chr8	PCAT1	MYC	126938310	127738251	chr8:126938310-chr8:127738251	+,+	Arriba	1	0	3		3	PASS		PCAT1--MYC	MYC--PCAT1	confidence:medium	medium	deletion	exon/splice-site	CDS/splice-site	4	65535													2	1				FAIL		False	chr8:126938310	chr8:127738251	chr8:126938310-chr8:127738251	.	.	medium	4	65535	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	.	GAACATACTGGCCCCCAG___AGACCAGGAACTGCATTTGGATTTAAAGAAACAAAACTTTCTGGCACCTACTGTG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTAC	PCAT1	MYC	ENSG00000253438	ENSG00000136997	.	LH00995:25:23T55JLT4:5:2198:23531:17661,LH00995:25:23T55JLT4:6:1273:11994:4965,LH00995:25:23T55JLT4:1:2166:34760:25199	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	exon/splice-site	CDS/splice-site	2	1	+/+	+/+	.	3	ENST00000646670	ENST00000524013	deletion	0.3333333333333333	1.52587890625e-05	0.1666742960611979																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	MYC--PCAT1	PCAT1--MYC	MYC--PCAT1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2	BND	chr8	chr8	PCAT1	MYC	127399018	127738248	chr8:127399018-chr8:127738248	+,+	Arriba	1	0	1		1	PASS		PCAT1--MYC	MYC--PCAT1	confidence:low	low	deletion/read-through	exon/splice-site	CDS/splice-site	1	65535													1	0				FAIL		False	chr8:127399018	chr8:127738248	chr8:127399018-chr8:127738248	.	.	low	1	65535	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTC	PCAT1	MYC	ENSG00000253438	ENSG00000136997	.	LH00995:25:23T55JLT4:5:2451:33708:2359	.	|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)	exon/splice-site	CDS/splice-site	1	0	+/+	+/+	.	1	ENST00000645215	ENST00000621592	deletion/read-through	0.5	0.0	0.25																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	NTRK3--OR4M1	OR4M1--NTRK3	NTRK3--OR4M1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr14	chr15	OR4M1	NTRK3	19773593	88184299	chr14:19773593-chr15:88184299	+,-	Arriba	1	0	4		4	PASS		OR4M1--NTRK3	NTRK3--OR4M1	confidence:medium;duplicates(6)	medium	translocation	5'UTR/splice-site	CDS/splice-site	1	3918	6.0	0.0	0.0	0.0									1	3		duplicates(6)		FAIL		False	chr14:19773593	chr15:88184299	chr14:19773593-chr15:88184299	.	.	medium	1	3918	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(6)	GGCTTCTTCTACCTCCTCCCCATAGTTCCTGAAGGCACCAAGACTGTCACAGTAATTG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAAC	OR4M1	NTRK3	ENSG00000176299	ENSG00000140538	.	LH00995:25:23T55JLT4:5:2372:28150:9996,LH00995:25:23T55JLT4:1:1333:11962:10739,LH00995:25:23T55JLT4:1:1333:11970:10725,LH00995:25:23T55JLT4:2:1302:15748:3536,LH00995:25:23T55JLT4:2:2144:20982:14172,LH00995:25:23T55JLT4:3:1207:21638:4321,LH00995:25:23T55JLT4:3:1285:11638:26460,LH00995:25:23T55JLT4:3:1324:27835:13709,LH00995:25:23T55JLT4:3:1415:21718:9281,LH00995:25:23T55JLT4:8:2167:51393:24611	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	5'UTR/splice-site	CDS/splice-site	1	3	+/+	-/-	.	4	ENST00000641200	ENST00000394480	translocation	0.5	0.0007651109410864575	0.2503825554705432																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	NTRK3--OR4M1	OR4M1--NTRK3	NTRK3--OR4M1	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr14	chr15	OR4M1	NTRK3	19773593	88184299	chr14:19773593-chr15:88184299	+,-	Arriba	1	0	4		4	PASS		OR4M1--NTRK3	NTRK3--OR4M1	confidence:medium;duplicates(6)	medium	translocation	5'UTR/splice-site	CDS/splice-site	1	3918	6.0	0.0	0.0	0.0									1	3		duplicates(6)		FAIL		False	chr14:19773593	chr15:88184299	chr14:19773593-chr15:88184299	.	.	medium	1	3918	downstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(6)	GGCTTCTTCTACCTCCTCCCCATAGTTCCTGAAGGCACCAAGACTGTCACAGTAATTG|ACACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT___GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAAC	OR4M1	NTRK3	ENSG00000176299	ENSG00000140538	.	LH00995:25:23T55JLT4:5:2372:28150:9996,LH00995:25:23T55JLT4:1:1333:11962:10739,LH00995:25:23T55JLT4:1:1333:11970:10725,LH00995:25:23T55JLT4:2:1302:15748:3536,LH00995:25:23T55JLT4:2:2144:20982:14172,LH00995:25:23T55JLT4:3:1207:21638:4321,LH00995:25:23T55JLT4:3:1285:11638:26460,LH00995:25:23T55JLT4:3:1324:27835:13709,LH00995:25:23T55JLT4:3:1415:21718:9281,LH00995:25:23T55JLT4:8:2167:51393:24611	.	|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%)	5'UTR/splice-site	CDS/splice-site	1	3	+/+	-/-	.	4	ENST00000641200	ENST00000394480	translocation	0.5	0.0007651109410864575	0.2503825554705432																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	NTRK3--RN7SL584P	NTRK3--RN7SL584P	NTRK3--RN7SL584P	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	NTRK3	RN7SL584P	88126271	20120500	chr15:88126271-chr15:20120500	-,+	Arriba	1	0	7		7	PASS	out-of-frame	NTRK3--RN7SL584P	NTRK3--RN7SL584P	confidence:medium;duplicates(6),mismappers(1),mismatches(2)	medium	inversion	CDS/splice-site	intergenic	1793	1	6.0	2.0	1.0	0.0									7	0	False	duplicates(6),mismappers(1),mismatches(2)		FAIL		False	chr15:88126271	chr15:20120500	chr15:88126271-chr15:20120500	.	.	medium	1793	1	upstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(7.0<8.0)	duplicates(6),mismappers(1),mismatches(2)	AAGACACTTTTGGG___...GGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG|CCAACCAACCAAGTCACCAAACAAATAAGCAAACAGCCAACCAATCAACCAACAAGCAAGCAAGCAAGCAAC	NTRK3	RN7SL584P(24471),AC087386.1(8245)	ENSG00000140538	.	VSIAVGLAAFACVLLVVLFVMINKYGRRSKFGMK|anqpshqtnkqtanqstnkqaskq	LH00995:25:23T55JLT4:1:2233:13839:14494,LH00995:25:23T55JLT4:2:1269:35480:2037,LH00995:25:23T55JLT4:2:1429:35641:16161,LH00995:25:23T55JLT4:2:2209:42583:21626,LH00995:25:23T55JLT4:2:2324:43642:3788,LH00995:25:23T55JLT4:2:2407:6291:25101,LH00995:25:23T55JLT4:2:2492:34331:29417,LH00995:25:23T55JLT4:3:1318:41571:3368,LH00995:25:23T55JLT4:4:1135:33667:21010,LH00995:25:23T55JLT4:5:1225:27293:28296,LH00995:25:23T55JLT4:5:2324:7723:19482,LH00995:25:23T55JLT4:6:1486:43108:18361,LH00995:25:23T55JLT4:8:1180:12391:7922,LH00995:25:23T55JLT4:8:1180:12399:7936,LH00995:25:23T55JLT4:8:2143:29024:29445,LH00995:25:23T55JLT4:8:2288:26111:15012	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Leucine_rich_repeat_N-terminal_domain(100%)|	CDS/splice-site	intergenic	7	0	-/-	./+	.	7	ENST00000394480	.	inversion	0.0038888888888888888	0.0	0.0019444444444444444																																						1173_SK8	Arriba
fp_audit	1173_SK8	fusion	NTRK3--RN7SL584P	NTRK3--RN7SL584P	NTRK3--RN7SL584P	FP	FP		Arriba		dev_rna_exp0016	1173_SK8	altera_exact	1173	clinical	patient	lung	Lung				62	unknown			False	1173_SK8_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		36.30	38.00	49.8			AIH_Ext13_RNA	H01		False		dev_rna_exp0016_lib_s24	200.00		78.96	dev_rna_exp0016	H03		False		1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_SK8_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr15	chr15	NTRK3	RN7SL584P	88126271	20120500	chr15:88126271-chr15:20120500	-,+	Arriba	1	0	7		7	PASS	out-of-frame	NTRK3--RN7SL584P	NTRK3--RN7SL584P	confidence:medium;duplicates(6),mismappers(1),mismatches(2)	medium	inversion	CDS/splice-site	intergenic	1793	1	6.0	2.0	1.0	0.0									7	0	False	duplicates(6),mismappers(1),mismatches(2)		FAIL		False	chr15:88126271	chr15:20120500	chr15:88126271-chr15:20120500	.	.	medium	1793	1	upstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(7.0<8.0)	duplicates(6),mismappers(1),mismatches(2)	AAGACACTTTTGGG___...GGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATCAACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG|CCAACCAACCAAGTCACCAAACAAATAAGCAAACAGCCAACCAATCAACCAACAAGCAAGCAAGCAAGCAAC	NTRK3	RN7SL584P(24471),AC087386.1(8245)	ENSG00000140538	.	VSIAVGLAAFACVLLVVLFVMINKYGRRSKFGMK|anqpshqtnkqtanqstnkqaskq	LH00995:25:23T55JLT4:1:2233:13839:14494,LH00995:25:23T55JLT4:2:1269:35480:2037,LH00995:25:23T55JLT4:2:1429:35641:16161,LH00995:25:23T55JLT4:2:2209:42583:21626,LH00995:25:23T55JLT4:2:2324:43642:3788,LH00995:25:23T55JLT4:2:2407:6291:25101,LH00995:25:23T55JLT4:2:2492:34331:29417,LH00995:25:23T55JLT4:3:1318:41571:3368,LH00995:25:23T55JLT4:4:1135:33667:21010,LH00995:25:23T55JLT4:5:1225:27293:28296,LH00995:25:23T55JLT4:5:2324:7723:19482,LH00995:25:23T55JLT4:6:1486:43108:18361,LH00995:25:23T55JLT4:8:1180:12391:7922,LH00995:25:23T55JLT4:8:1180:12399:7936,LH00995:25:23T55JLT4:8:2143:29024:29445,LH00995:25:23T55JLT4:8:2288:26111:15012	out-of-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Leucine_rich_repeat_N-terminal_domain(100%)|	CDS/splice-site	intergenic	7	0	-/-	./+	.	7	ENST00000394480	.	inversion	0.0038888888888888888	0.0	0.0019444444444444444																																						1173_SK8	Arriba
fp_audit	1173_T46	fusion	NACA--PAX7	PAX7--NACA	NACA--PAX7	FP	FP		Arriba		dev_rna_exp0016	1173_T46	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				60	unknown			False	1173_T46_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		17.80	38.00	42.75			AIH_Ext13_RNA	E03		False		dev_rna_exp0016_lib_s37	200.00		21.36	dev_rna_exp0016	E05		False		1173_T46_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_T46_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr12	PAX7	NACA	18720735	56712908	chr1:18720735-chr12:56712908	+,-	Arriba	1	0	17		17	PASS		PAX7--NACA	NACA--PAX7	confidence:medium;duplicates(187),mismatches(38)	medium	translocation	intron	CDS/splice-site	3	65535	187.0	38.0	0.0	0.0									0	17		duplicates(187),mismatches(38)		FAIL		False	chr1:18720735	chr12:56712908	chr1:18720735-chr12:56712908	.	.	medium	3	65535	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(187),mismatches(38)	GGGGGGAGAGAGAGAGAGAGAGAG|GTCGATGAAACAGGTGTAGAAGTTAAGGACATTGAATTGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGA	PAX7	NACA	ENSG00000009709	ENSG00000196531	.	LH00995:25:23T55JLT4:1:1118:10676:20253,LH00995:25:23T55JLT4:1:1178:25966:24569,LH00995:25:23T55JLT4:1:1185:7221:5750,LH00995:25:23T55JLT4:1:1196:7957:17478,LH00995:25:23T55JLT4:1:1197:35965:10388,LH00995:25:23T55JLT4:1:1270:28312:25802,LH00995:25:23T55JLT4:1:1326:7415:17829,LH00995:25:23T55JLT4:1:1337:41175:5036,LH00995:25:23T55JLT4:1:1360:38028:2948,LH00995:25:23T55JLT4:1:1362:11266:17745,LH00995:25:23T55JLT4:1:1407:23652:13331,LH00995:25:23T55JLT4:1:1466:23935:14942,LH00995:25:23T55JLT4:1:1468:51271:22383,LH00995:25:23T55JLT4:1:1474:36086:29291,LH00995:25:23T55JLT4:1:1488:24186:8258,LH00995:25:23T55JLT4:1:2132:14300:17338,LH00995:25:23T55JLT4:1:2140:3014:11691,LH00995:25:23T55JLT4:1:2178:17989:18151,LH00995:25:23T55JLT4:1:2184:10045:24373,LH00995:25:23T55JLT4:1:2216:43853:8721,LH00995:25:23T55JLT4:1:2228:14373:11047,LH00995:25:23T55JLT4:1:2272:24057:4839,LH00995:25:23T55JLT4:1:2321:48326:21626,LH00995:25:23T55JLT4:1:2381:50988:17941,LH00995:25:23T55JLT4:1:2392:49742:23574,LH00995:25:23T55JLT4:1:2393:21662:23392,LH00995:25:23T55JLT4:1:2410:1582:14648,LH00995:25:23T55JLT4:1:2432:26945:3032,LH00995:25:23T55JLT4:1:2448:29752:16273,LH00995:25:23T55JLT4:1:2473:16695:20477,LH00995:25:23T55JLT4:1:2480:46255:13135,LH00995:25:23T55JLT4:1:2489:2173:29543,LH00995:25:23T55JLT4:1:2491:48051:23532,LH00995:25:23T55JLT4:2:1109:44168:12070,LH00995:25:23T55JLT4:2:1166:50842:3873,LH00995:25:23T55JLT4:2:1176:40406:4937,LH00995:25:23T55JLT4:2:1189:48788:12336,LH00995:25:23T55JLT4:2:1205:17649:4923,LH00995:25:23T55JLT4:2:1217:36531:4643,LH00995:25:23T55JLT4:2:1237:19259:4517,LH00995:25:23T55JLT4:2:1250:27802:11607,LH00995:25:23T55JLT4:2:1259:28619:11425,LH00995:25:23T55JLT4:2:1268:20303:9940,LH00995:25:23T55JLT4:2:1297:7262:7586,LH00995:25:23T55JLT4:2:1345:21007:12392,LH00995:25:23T55JLT4:2:1349:21476:20043,LH00995:25:23T55JLT4:2:1352:12116:9491,LH00995:25:23T55JLT4:2:1367:11922:9379,LH00995:25:23T55JLT4:2:1444:4131:25507,LH00995:25:23T55JLT4:2:1477:24663:29655,LH00995:25:23T55JLT4:2:2113:37664:16021,LH00995:25:23T55JLT4:2:2125:20554:28926,LH00995:25:23T55JLT4:2:2247:34946:24989,LH00995:25:23T55JLT4:2:2248:12253:15867,LH00995:25:23T55JLT4:2:2270:44872:6283,LH00995:25:23T55JLT4:2:2319:40908:25928,LH00995:25:23T55JLT4:2:2360:29533:15755,LH00995:25:23T55JLT4:2:2360:36030:22271,LH00995:25:23T55JLT4:2:2402:17301:3312,LH00995:25:23T55JLT4:2:2428:16881:25760,LH00995:25:23T55JLT4:2:2438:46045:26783,LH00995:25:23T55JLT4:2:2457:8605:14536,LH00995:25:23T55JLT4:2:2471:10765:21416,LH00995:25:23T55JLT4:2:2476:31281:19482,LH00995:25:23T55JLT4:3:1101:34929:25662,LH00995:25:23T55JLT4:3:1111:21201:14270,LH00995:25:23T55JLT4:3:1136:28045:16484,LH00995:25:23T55JLT4:3:1149:15602:14494,LH00995:25:23T55JLT4:3:1150:48933:10262,LH00995:25:23T55JLT4:3:1233:20076:23504,LH00995:25:23T55JLT4:3:1263:22633:5820,LH00995:25:23T55JLT4:3:1269:38279:29445,LH00995:25:23T55JLT4:3:1309:47857:3859,LH00995:25:23T55JLT4:3:1328:40811:18165,LH00995:25:23T55JLT4:3:1333:35407:22313,LH00995:25:23T55JLT4:3:1333:35415:22327,LH00995:25:23T55JLT4:3:1342:22665:8314,LH00995:25:23T55JLT4:3:1349:47817:18894,LH00995:25:23T55JLT4:3:1368:7254:14017,LH00995:25:23T55JLT4:3:1460:41709:10753,LH00995:25:23T55JLT4:3:1461:24720:4783,LH00995:25:23T55JLT4:3:1487:42566:9828,LH00995:25:23T55JLT4:3:1495:50220:27427,LH00995:25:23T55JLT4:3:2106:7610:4573,LH00995:25:23T55JLT4:3:2128:1267:19987,LH00995:25:23T55JLT4:3:2144:40156:16722,LH00995:25:23T55JLT4:3:2172:5223:4895,LH00995:25:23T55JLT4:3:2192:45641:5316,LH00995:25:23T55JLT4:3:2221:51829:27469,LH00995:25:23T55JLT4:3:2241:40803:8707,LH00995:25:23T55JLT4:3:2257:24623:15433,LH00995:25:23T55JLT4:3:2277:2739:22929,LH00995:25:23T55JLT4:3:2283:25982:7137,LH00995:25:23T55JLT4:3:2335:1493:9898,LH00995:25:23T55JLT4:3:2387:10392:3957,LH00995:25:23T55JLT4:3:2394:36240:16498,LH00995:25:23T55JLT4:3:2425:50406:26797,LH00995:25:23T55JLT4:3:2461:23498:1911,LH00995:25:23T55JLT4:3:2475:14988:3760,LH00995:25:23T55JLT4:4:1102:41523:22032,LH00995:25:23T55JLT4:4:1166:28635:2065,LH00995:25:23T55JLT4:4:1169:21363:20155,LH00995:25:23T55JLT4:4:1221:5733:10682,LH00995:25:23T55JLT4:4:1227:22099:24148,LH00995:25:23T55JLT4:4:1250:50559:18684,LH00995:25:23T55JLT4:4:1257:31863:6311,LH00995:25:23T55JLT4:4:1280:17843:24681,LH00995:25:23T55JLT4:4:1285:37737:15335,LH00995:25:23T55JLT4:4:1297:21913:8553,LH00995:25:23T55JLT4:4:1312:23652:17086,LH00995:25:23T55JLT4:4:1385:14526:11173,LH00995:25:23T55JLT4:4:1393:7828:14704,LH00995:25:23T55JLT4:4:1398:2351:27357,LH00995:25:23T55JLT4:4:1430:15643:25353,LH00995:25:23T55JLT4:4:1437:23474:4923,LH00995:25:23T55JLT4:4:1445:46353:8483,LH00995:25:23T55JLT4:4:1466:30537:12840,LH00995:25:23T55JLT4:4:1475:37219:16708,LH00995:25:23T55JLT4:4:2102:17900:9758,LH00995:25:23T55JLT4:4:2175:21476:13317,LH00995:25:23T55JLT4:4:2184:23159:19678,LH00995:25:23T55JLT4:4:2188:26297:7235,LH00995:25:23T55JLT4:4:2203:28983:8917,LH00995:25:23T55JLT4:4:2231:1817:12364,LH00995:25:23T55JLT4:4:2233:2966:15335,LH00995:25:23T55JLT4:4:2282:37640:23630,LH00995:25:23T55JLT4:4:2291:27034:19692,LH00995:25:23T55JLT4:4:2433:44435:26993,LH00995:25:23T55JLT4:4:2443:10061:3690,LH00995:25:23T55JLT4:4:2446:48610:3284,LH00995:25:23T55JLT4:4:2469:12593:10711,LH00995:25:23T55JLT4:4:2491:47639:18557,LH00995:25:23T55JLT4:5:1102:40487:7011,LH00995:25:23T55JLT4:5:1154:14632:16876,LH00995:25:23T55JLT4:5:1187:45762:6171,LH00995:25:23T55JLT4:5:1244:11396:6759,LH00995:25:23T55JLT4:5:1245:43448:16904,LH00995:25:23T55JLT4:5:1258:24995:3830,LH00995:25:23T55JLT4:5:1289:6032:1813,LH00995:25:23T55JLT4:5:1305:5757:24625,LH00995:25:23T55JLT4:5:1339:46094:13303,LH00995:25:23T55JLT4:5:1347:22147:5176,LH00995:25:23T55JLT4:5:1354:38748:29389,LH00995:25:23T55JLT4:5:1371:29663:26797,LH00995:25:23T55JLT4:5:1393:12027:15699,LH00995:25:23T55JLT4:5:1402:23061:15727,LH00995:25:23T55JLT4:5:1453:43125:7516,LH00995:25:23T55JLT4:5:1474:29469:11131,LH00995:25:23T55JLT4:5:1493:7812:5540,LH00995:25:23T55JLT4:5:2136:42291:6128,LH00995:25:23T55JLT4:5:2197:22058:25087,LH00995:25:23T55JLT4:5:2263:39824:14858,LH00995:25:23T55JLT4:5:2264:19858:9842,LH00995:25:23T55JLT4:5:2342:31604:8497,LH00995:25:23T55JLT4:5:2351:30059:2541,LH00995:25:23T55JLT4:5:2371:11549:5932,LH00995:25:23T55JLT4:5:2428:20545:5344,LH00995:25:23T55JLT4:5:2497:32867:9590,LH00995:25:23T55JLT4:6:1140:9778:2667,LH00995:25:23T55JLT4:6:1151:49653:10276,LH00995:25:23T55JLT4:6:1234:45406:20043,LH00995:25:23T55JLT4:6:1234:45463:19917,LH00995:25:23T55JLT4:6:1247:13766:16946,LH00995:25:23T55JLT4:6:1265:41110:4503,LH00995:25:23T55JLT4:6:1301:34921:9618,LH00995:25:23T55JLT4:6:1333:42785:21976,LH00995:25:23T55JLT4:6:1350:2561:16876,LH00995:25:23T55JLT4:6:1357:8160:9842,LH00995:25:23T55JLT4:6:1383:37219:5750,LH00995:25:23T55JLT4:6:1387:34525:11397,LH00995:25:23T55JLT4:6:1402:34371:27721,LH00995:25:23T55JLT4:6:1405:36960:21892,LH00995:25:23T55JLT4:6:1413:39775:26741,LH00995:25:23T55JLT4:6:1437:48286:29543,LH00995:25:23T55JLT4:6:1491:34954:9982,LH00995:25:23T55JLT4:6:1495:26395:29151,LH00995:25:23T55JLT4:6:2102:38894:6409,LH00995:25:23T55JLT4:6:2118:22900:23574,LH00995:25:23T55JLT4:6:2159:40479:2822,LH00995:25:23T55JLT4:6:2168:33797:26362,LH00995:25:23T55JLT4:6:2225:15505:21976,LH00995:25:23T55JLT4:6:2244:5992:24387,LH00995:25:23T55JLT4:6:2308:7755:4769,LH00995:25:23T55JLT4:6:2309:34193:18445,LH00995:25:23T55JLT4:6:2368:31071:1715,LH00995:25:23T55JLT4:6:2370:10384:14452,LH00995:25:23T55JLT4:6:2385:2893:4111,LH00995:25:23T55JLT4:6:2387:3597:18810,LH00995:25:23T55JLT4:6:2393:14389:28114,LH00995:25:23T55JLT4:6:2419:8896:10528,LH00995:25:23T55JLT4:6:2487:19114:28226,LH00995:25:23T55JLT4:6:2488:8321:11551,LH00995:25:23T55JLT4:7:1157:16314:16035,LH00995:25:23T55JLT4:7:1169:10206:21990,LH00995:25:23T55JLT4:7:1178:25796:28422,LH00995:25:23T55JLT4:7:1183:50770:23868,LH00995:25:23T55JLT4:7:1183:9219:3859,LH00995:25:23T55JLT4:7:1227:42308:6100,LH00995:25:23T55JLT4:7:1255:27584:2597,LH00995:25:23T55JLT4:7:1357:1801:6002,LH00995:25:23T55JLT4:7:1362:16023:20547,LH00995:25:23T55JLT4:7:1372:51158:15040,LH00995:25:23T55JLT4:7:1374:11873:7894,LH00995:25:23T55JLT4:7:1417:8629:10907,LH00995:25:23T55JLT4:7:1465:22705:15755,LH00995:25:23T55JLT4:7:1465:40398:22299,LH00995:25:23T55JLT4:7:1466:22269:22565,LH00995:25:23T55JLT4:7:1468:35933:12826,LH00995:25:23T55JLT4:7:2102:40091:21990,LH00995:25:23T55JLT4:7:2106:47461:16708,LH00995:25:23T55JLT4:8:1102:50786:2990,LH00995:25:23T55JLT4:8:1120:38821:4405,LH00995:25:23T55JLT4:8:1311:17738:26152,LH00995:25:23T55JLT4:8:1329:47202:13373,LH00995:25:23T55JLT4:8:1353:37874:18515,LH00995:25:23T55JLT4:8:1357:32090:16820,LH00995:25:23T55JLT4:8:1363:28021:26727,LH00995:25:23T55JLT4:8:1371:50721:16161,LH00995:25:23T55JLT4:8:1389:38869:24527,LH00995:25:23T55JLT4:8:1411:23264:22971,LH00995:25:23T55JLT4:8:1423:27220:2107,LH00995:25:23T55JLT4:8:1434:36742:17899,LH00995:25:23T55JLT4:8:1460:28846:8398,LH00995:25:23T55JLT4:8:1471:22066:22467,LH00995:25:23T55JLT4:8:1488:21848:13401,LH00995:25:23T55JLT4:8:2130:17237:19622,LH00995:25:23T55JLT4:8:2141:33004:18487,LH00995:25:23T55JLT4:8:2167:50017:22369,LH00995:25:23T55JLT4:8:2202:19162:4181,LH00995:25:23T55JLT4:8:2260:51093:17086,LH00995:25:23T55JLT4:8:2297:42445:4209,LH00995:25:23T55JLT4:8:2356:19890:16203,LH00995:25:23T55JLT4:8:2357:29242:2303,LH00995:25:23T55JLT4:8:2371:36839:13611,LH00995:25:23T55JLT4:8:2385:30569:12532,LH00995:25:23T55JLT4:8:2385:45819:6353,LH00995:25:23T55JLT4:8:2403:10943:6423,LH00995:25:23T55JLT4:8:2403:20683:25676,LH00995:25:23T55JLT4:8:2411:18952:24555,LH00995:25:23T55JLT4:8:2447:33942:3859,LH00995:25:23T55JLT4:8:2474:9333:27707,LH00995:25:23T55JLT4:8:2493:34646:21080	.	'Paired_box'_domain(100%),Homeodomain(100%),Paired_box_protein_7_(100%)|HYPK_UBA_domain(100%)	intron	CDS/splice-site	0	17	+/+	-/-	.	17	.	ENST00000356769	translocation	0.0	0.00025933609958506224	0.00012966804979253112																																						1173_T46	Arriba
fp_audit	1173_T46	fusion	NACA--PAX7	PAX7--NACA	NACA--PAX7	FP	FP		Arriba		dev_rna_exp0016	1173_T46	altera_exact	1173	clinical	patient	sarcoma	Sarcoma				60	unknown			False	1173_T46_T1_RNA_SLD_01	tRNA	altera_inhouse	ssf		17.80	38.00	42.75			AIH_Ext13_RNA	E03		False		dev_rna_exp0016_lib_s37	200.00		21.36	dev_rna_exp0016	E05		False		1173_T46_T1_RNA_SLD_01_A23T55JLT4_1	dev_rna_exp0016	1,2,3,4,5,6,7,8	1.00	False		nfcore_rnafusion	1173_T46_T1_RNA_SLD_01_A23T55JLT4_1	BND	chr1	chr12	PAX7	NACA	18720735	56712908	chr1:18720735-chr12:56712908	+,-	Arriba	1	0	17		17	PASS		PAX7--NACA	NACA--PAX7	confidence:medium;duplicates(187),mismatches(38)	medium	translocation	intron	CDS/splice-site	3	65535	187.0	38.0	0.0	0.0									0	17		duplicates(187),mismatches(38)		FAIL		False	chr1:18720735	chr12:56712908	chr1:18720735-chr12:56712908	.	.	medium	3	65535	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(187),mismatches(38)	GGGGGGAGAGAGAGAGAGAGAGAG|GTCGATGAAACAGGTGTAGAAGTTAAGGACATTGAATTGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGA	PAX7	NACA	ENSG00000009709	ENSG00000196531	.	LH00995:25:23T55JLT4:1:1118:10676:20253,LH00995:25:23T55JLT4:1:1178:25966:24569,LH00995:25:23T55JLT4:1:1185:7221:5750,LH00995:25:23T55JLT4:1:1196:7957:17478,LH00995:25:23T55JLT4:1:1197:35965:10388,LH00995:25:23T55JLT4:1:1270:28312:25802,LH00995:25:23T55JLT4:1:1326:7415:17829,LH00995:25:23T55JLT4:1:1337:41175:5036,LH00995:25:23T55JLT4:1:1360:38028:2948,LH00995:25:23T55JLT4:1:1362:11266:17745,LH00995:25:23T55JLT4:1:1407:23652:13331,LH00995:25:23T55JLT4:1:1466:23935:14942,LH00995:25:23T55JLT4:1:1468:51271:22383,LH00995:25:23T55JLT4:1:1474:36086:29291,LH00995:25:23T55JLT4:1:1488:24186:8258,LH00995:25:23T55JLT4:1:2132:14300:17338,LH00995:25:23T55JLT4:1:2140:3014:11691,LH00995:25:23T55JLT4:1:2178:17989:18151,LH00995:25:23T55JLT4:1:2184:10045:24373,LH00995:25:23T55JLT4:1:2216:43853:8721,LH00995:25:23T55JLT4:1:2228:14373:11047,LH00995:25:23T55JLT4:1:2272:24057:4839,LH00995:25:23T55JLT4:1:2321:48326:21626,LH00995:25:23T55JLT4:1:2381:50988:17941,LH00995:25:23T55JLT4:1:2392:49742:23574,LH00995:25:23T55JLT4:1:2393:21662:23392,LH00995:25:23T55JLT4:1:2410:1582:14648,LH00995:25:23T55JLT4:1:2432:26945:3032,LH00995:25:23T55JLT4:1:2448:29752:16273,LH00995:25:23T55JLT4:1:2473:16695:20477,LH00995:25:23T55JLT4:1:2480:46255:13135,LH00995:25:23T55JLT4:1:2489:2173:29543,LH00995:25:23T55JLT4:1:2491:48051:23532,LH00995:25:23T55JLT4:2:1109:44168:12070,LH00995:25:23T55JLT4:2:1166:50842:3873,LH00995:25:23T55JLT4:2:1176:40406:4937,LH00995:25:23T55JLT4:2:1189:48788:12336,LH00995:25:23T55JLT4:2:1205:17649:4923,LH00995:25:23T55JLT4:2:1217:36531:4643,LH00995:25:23T55JLT4:2:1237:19259:4517,LH00995:25:23T55JLT4:2:1250:27802:11607,LH00995:25:23T55JLT4:2:1259:28619:11425,LH00995:25:23T55JLT4:2:1268:20303:9940,LH00995:25:23T55JLT4:2:1297:7262:7586,LH00995:25:23T55JLT4:2:1345:21007:12392,LH00995:25:23T55JLT4:2:1349:21476:20043,LH00995:25:23T55JLT4:2:1352:12116:9491,LH00995:25:23T55JLT4:2:1367:11922:9379,LH00995:25:23T55JLT4:2:1444:4131:25507,LH00995:25:23T55JLT4:2:1477:24663:29655,LH00995:25:23T55JLT4:2:2113:37664:16021,LH00995:25:23T55JLT4:2:2125:20554:28926,LH00995:25:23T55JLT4:2:2247:34946:24989,LH00995:25:23T55JLT4:2:2248:12253:15867,LH00995:25:23T55JLT4:2:2270:44872:6283,LH00995:25:23T55JLT4:2:2319:40908:25928,LH00995:25:23T55JLT4:2:2360:29533:15755,LH00995:25:23T55JLT4:2:2360:36030:22271,LH00995:25:23T55JLT4:2:2402:17301:3312,LH00995:25:23T55JLT4:2:2428:16881:25760,LH00995:25:23T55JLT4:2:2438:46045:26783,LH00995:25:23T55JLT4:2:2457:8605:14536,LH00995:25:23T55JLT4:2:2471:10765:21416,LH00995:25:23T55JLT4:2:2476:31281:19482,LH00995:25:23T55JLT4:3:1101:34929:25662,LH00995:25:23T55JLT4:3:1111:21201:14270,LH00995:25:23T55JLT4:3:1136:28045:16484,LH00995:25:23T55JLT4:3:1149:15602:14494,LH00995:25:23T55JLT4:3:1150:48933:10262,LH00995:25:23T55JLT4:3:1233:20076:23504,LH00995:25:23T55JLT4:3:1263:22633:5820,LH00995:25:23T55JLT4:3:1269:38279:29445,LH00995:25:23T55JLT4:3:1309:47857:3859,LH00995:25:23T55JLT4:3:1328:40811:18165,LH00995:25:23T55JLT4:3:1333:35407:22313,LH00995:25:23T55JLT4:3:1333:35415:22327,LH00995:25:23T55JLT4:3:1342:22665:8314,LH00995:25:23T55JLT4:3:1349:47817:18894,LH00995:25:23T55JLT4:3:1368:7254:14017,LH00995:25:23T55JLT4:3:1460:41709:10753,LH00995:25:23T55JLT4:3:1461:24720:4783,LH00995:25:23T55JLT4:3:1487:42566:9828,LH00995:25:23T55JLT4:3:1495:50220:27427,LH00995:25:23T55JLT4:3:2106:7610:4573,LH00995:25:23T55JLT4:3:2128:1267:19987,LH00995:25:23T55JLT4:3:2144:40156:16722,LH00995:25:23T55JLT4:3:2172:5223:4895,LH00995:25:23T55JLT4:3:2192:45641:5316,LH00995:25:23T55JLT4:3:2221:51829:27469,LH00995:25:23T55JLT4:3:2241:40803:8707,LH00995:25:23T55JLT4:3:2257:24623:15433,LH00995:25:23T55JLT4:3:2277:2739:22929,LH00995:25:23T55JLT4:3:2283:25982:7137,LH00995:25:23T55JLT4:3:2335:1493:9898,LH00995:25:23T55JLT4:3:2387:10392:3957,LH00995:25:23T55JLT4:3:2394:36240:16498,LH00995:25:23T55JLT4:3:2425:50406:26797,LH00995:25:23T55JLT4:3:2461:23498:1911,LH00995:25:23T55JLT4:3:2475:14988:3760,LH00995:25:23T55JLT4:4:1102:41523:22032,LH00995:25:23T55JLT4:4:1166:28635:2065,LH00995:25:23T55JLT4:4:1169:21363:20155,LH00995:25:23T55JLT4:4:1221:5733:10682,LH00995:25:23T55JLT4:4:1227:22099:24148,LH00995:25:23T55JLT4:4:1250:50559:18684,LH00995:25:23T55JLT4:4:1257:31863:6311,LH00995:25:23T55JLT4:4:1280:17843:24681,LH00995:25:23T55JLT4:4:1285:37737:15335,LH00995:25:23T55JLT4:4:1297:21913:8553,LH00995:25:23T55JLT4:4:1312:23652:17086,LH00995:25:23T55JLT4:4:1385:14526:11173,LH00995:25:23T55JLT4:4:1393:7828:14704,LH00995:25:23T55JLT4:4:1398:2351:27357,LH00995:25:23T55JLT4:4:1430:15643:25353,LH00995:25:23T55JLT4:4:1437:23474:4923,LH00995:25:23T55JLT4:4:1445:46353:8483,LH00995:25:23T55JLT4:4:1466:30537:12840,LH00995:25:23T55JLT4:4:1475:37219:16708,LH00995:25:23T55JLT4:4:2102:17900:9758,LH00995:25:23T55JLT4:4:2175:21476:13317,LH00995:25:23T55JLT4:4:2184:23159:19678,LH00995:25:23T55JLT4:4:2188:26297:7235,LH00995:25:23T55JLT4:4:2203:28983:8917,LH00995:25:23T55JLT4:4:2231:1817:12364,LH00995:25:23T55JLT4:4:2233:2966:15335,LH00995:25:23T55JLT4:4:2282:37640:23630,LH00995:25:23T55JLT4:4:2291:27034:19692,LH00995:25:23T55JLT4:4:2433:44435:26993,LH00995:25:23T55JLT4:4:2443:10061:3690,LH00995:25:23T55JLT4:4:2446:48610:3284,LH00995:25:23T55JLT4:4:2469:12593:10711,LH00995:25:23T55JLT4:4:2491:47639:18557,LH00995:25:23T55JLT4:5:1102:40487:7011,LH00995:25:23T55JLT4:5:1154:14632:16876,LH00995:25:23T55JLT4:5:1187:45762:6171,LH00995:25:23T55JLT4:5:1244:11396:6759,LH00995:25:23T55JLT4:5:1245:43448:16904,LH00995:25:23T55JLT4:5:1258:24995:3830,LH00995:25:23T55JLT4:5:1289:6032:1813,LH00995:25:23T55JLT4:5:1305:5757:24625,LH00995:25:23T55JLT4:5:1339:46094:13303,LH00995:25:23T55JLT4:5:1347:22147:5176,LH00995:25:23T55JLT4:5:1354:38748:29389,LH00995:25:23T55JLT4:5:1371:29663:26797,LH00995:25:23T55JLT4:5:1393:12027:15699,LH00995:25:23T55JLT4:5:1402:23061:15727,LH00995:25:23T55JLT4:5:1453:43125:7516,LH00995:25:23T55JLT4:5:1474:29469:11131,LH00995:25:23T55JLT4:5:1493:7812:5540,LH00995:25:23T55JLT4:5:2136:42291:6128,LH00995:25:23T55JLT4:5:2197:22058:25087,LH00995:25:23T55JLT4:5:2263:39824:14858,LH00995:25:23T55JLT4:5:2264:19858:9842,LH00995:25:23T55JLT4:5:2342:31604:8497,LH00995:25:23T55JLT4:5:2351:30059:2541,LH00995:25:23T55JLT4:5:2371:11549:5932,LH00995:25:23T55JLT4:5:2428:20545:5344,LH00995:25:23T55JLT4:5:2497:32867:9590,LH00995:25:23T55JLT4:6:1140:9778:2667,LH00995:25:23T55JLT4:6:1151:49653:10276,LH00995:25:23T55JLT4:6:1234:45406:20043,LH00995:25:23T55JLT4:6:1234:45463:19917,LH00995:25:23T55JLT4:6:1247:13766:16946,LH00995:25:23T55JLT4:6:1265:41110:4503,LH00995:25:23T55JLT4:6:1301:34921:9618,LH00995:25:23T55JLT4:6:1333:42785:21976,LH00995:25:23T55JLT4:6:1350:2561:16876,LH00995:25:23T55JLT4:6:1357:8160:9842,LH00995:25:23T55JLT4:6:1383:37219:5750,LH00995:25:23T55JLT4:6:1387:34525:11397,LH00995:25:23T55JLT4:6:1402:34371:27721,LH00995:25:23T55JLT4:6:1405:36960:21892,LH00995:25:23T55JLT4:6:1413:39775:26741,LH00995:25:23T55JLT4:6:1437:48286:29543,LH00995:25:23T55JLT4:6:1491:34954:9982,LH00995:25:23T55JLT4:6:1495:26395:29151,LH00995:25:23T55JLT4:6:2102:38894:6409,LH00995:25:23T55JLT4:6:2118:22900:23574,LH00995:25:23T55JLT4:6:2159:40479:2822,LH00995:25:23T55JLT4:6:2168:33797:26362,LH00995:25:23T55JLT4:6:2225:15505:21976,LH00995:25:23T55JLT4:6:2244:5992:24387,LH00995:25:23T55JLT4:6:2308:7755:4769,LH00995:25:23T55JLT4:6:2309:34193:18445,LH00995:25:23T55JLT4:6:2368:31071:1715,LH00995:25:23T55JLT4:6:2370:10384:14452,LH00995:25:23T55JLT4:6:2385:2893:4111,LH00995:25:23T55JLT4:6:2387:3597:18810,LH00995:25:23T55JLT4:6:2393:14389:28114,LH00995:25:23T55JLT4:6:2419:8896:10528,LH00995:25:23T55JLT4:6:2487:19114:28226,LH00995:25:23T55JLT4:6:2488:8321:11551,LH00995:25:23T55JLT4:7:1157:16314:16035,LH00995:25:23T55JLT4:7:1169:10206:21990,LH00995:25:23T55JLT4:7:1178:25796:28422,LH00995:25:23T55JLT4:7:1183:50770:23868,LH00995:25:23T55JLT4:7:1183:9219:3859,LH00995:25:23T55JLT4:7:1227:42308:6100,LH00995:25:23T55JLT4:7:1255:27584:2597,LH00995:25:23T55JLT4:7:1357:1801:6002,LH00995:25:23T55JLT4:7:1362:16023:20547,LH00995:25:23T55JLT4:7:1372:51158:15040,LH00995:25:23T55JLT4:7:1374:11873:7894,LH00995:25:23T55JLT4:7:1417:8629:10907,LH00995:25:23T55JLT4:7:1465:22705:15755,LH00995:25:23T55JLT4:7:1465:40398:22299,LH00995:25:23T55JLT4:7:1466:22269:22565,LH00995:25:23T55JLT4:7:1468:35933:12826,LH00995:25:23T55JLT4:7:2102:40091:21990,LH00995:25:23T55JLT4:7:2106:47461:16708,LH00995:25:23T55JLT4:8:1102:50786:2990,LH00995:25:23T55JLT4:8:1120:38821:4405,LH00995:25:23T55JLT4:8:1311:17738:26152,LH00995:25:23T55JLT4:8:1329:47202:13373,LH00995:25:23T55JLT4:8:1353:37874:18515,LH00995:25:23T55JLT4:8:1357:32090:16820,LH00995:25:23T55JLT4:8:1363:28021:26727,LH00995:25:23T55JLT4:8:1371:50721:16161,LH00995:25:23T55JLT4:8:1389:38869:24527,LH00995:25:23T55JLT4:8:1411:23264:22971,LH00995:25:23T55JLT4:8:1423:27220:2107,LH00995:25:23T55JLT4:8:1434:36742:17899,LH00995:25:23T55JLT4:8:1460:28846:8398,LH00995:25:23T55JLT4:8:1471:22066:22467,LH00995:25:23T55JLT4:8:1488:21848:13401,LH00995:25:23T55JLT4:8:2130:17237:19622,LH00995:25:23T55JLT4:8:2141:33004:18487,LH00995:25:23T55JLT4:8:2167:50017:22369,LH00995:25:23T55JLT4:8:2202:19162:4181,LH00995:25:23T55JLT4:8:2260:51093:17086,LH00995:25:23T55JLT4:8:2297:42445:4209,LH00995:25:23T55JLT4:8:2356:19890:16203,LH00995:25:23T55JLT4:8:2357:29242:2303,LH00995:25:23T55JLT4:8:2371:36839:13611,LH00995:25:23T55JLT4:8:2385:30569:12532,LH00995:25:23T55JLT4:8:2385:45819:6353,LH00995:25:23T55JLT4:8:2403:10943:6423,LH00995:25:23T55JLT4:8:2403:20683:25676,LH00995:25:23T55JLT4:8:2411:18952:24555,LH00995:25:23T55JLT4:8:2447:33942:3859,LH00995:25:23T55JLT4:8:2474:9333:27707,LH00995:25:23T55JLT4:8:2493:34646:21080	.	'Paired_box'_domain(100%),Homeodomain(100%),Paired_box_protein_7_(100%)|HYPK_UBA_domain(100%)	intron	CDS/splice-site	0	17	+/+	-/-	.	17	.	ENST00000356769	translocation	0.0	0.00025933609958506224	0.00012966804979253112																																						1173_T46	Arriba
fp_audit	659_bdp	fusion	FGFR2--ILRUN	ILRUN--FGFR2	FGFR2--ILRUN	FP	FP		Arriba		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr10	ILRUN	FGFR2	34606801	121488113	chr6:34606801-chr10:121488113	-,-	Arriba	1	0	126		126	PASS	in-frame	ILRUN--FGFR2	FGFR2--ILRUN	confidence:high;duplicates(182)	high	translocation	CDS	CDS/splice-site	197	2577	182.0	0.0	0.0	0.0									1	125	True	duplicates(182)		PASS		False	chr6:34606801	chr10:121488113	chr6:34606801-chr10:121488113	.	.	high	197	2577	upstream	downstream	0		duplicates(182)	GTAACGCAGCAGCTGTCATCTTTTGAAACGGAGTTCAACACACAGCCGCATCGTAAG|TGTATTCATCGAGATTTAGCAGCCAGAAATGTTTTGGTAACAGAAAACAATGTGATGAAAATAGCAGACTTTGGACTCGCCAGAGATATCAACAATATAGACTATTACAAAAAGACCACCAAT___GGGCGGCTTCCAGTCAAGTGGATGGCTCCAGAAGCCCTGTTTGATAGAGTATACACTCATCAGAGTGATGT___CTGGTCCTTCGGGGTGTTAATGTGGGAGATCTTCACTTTAGGGGGCTCGCCCTACCCAGGG	ILRUN	FGFR2	ENSG00000196821	ENSG00000066468	VTQQLSSFETEFNTQPHRK|CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP	LH00166:186:2372Y3LT4:8:1107:13734:11874,LH00166:186:2372Y3LT4:8:1103:13669:26418,LH00166:186:2372Y3LT4:8:1103:8054:28856,LH00166:186:2372Y3LT4:8:1110:45446:25970,LH00166:186:2372Y3LT4:8:1110:45455:25956,LH00166:186:2372Y3LT4:8:1111:36976:15699,LH00166:186:2372Y3LT4:8:1113:26540:11832,LH00166:186:2372Y3LT4:8:1115:51142:19496,LH00166:186:2372Y3LT4:8:1116:42162:8483,LH00166:186:2372Y3LT4:8:1117:46644:19692,LH00166:186:2372Y3LT4:8:1117:46660:19692,LH00166:186:2372Y3LT4:8:1118:31847:2051,LH00166:186:2372Y3LT4:8:1118:51417:4923,LH00166:186:2372Y3LT4:8:1119:36758:9351,LH00166:186:2372Y3LT4:8:1119:36766:9365,LH00166:186:2372Y3LT4:8:1119:9899:4475,LH00166:186:2372Y3LT4:8:1121:33595:2667,LH00166:186:2372Y3LT4:8:1121:33603:2653,LH00166:186:2372Y3LT4:8:1121:33611:2667,LH00166:186:2372Y3LT4:8:1124:3751:23588,LH00166:186:2372Y3LT4:8:1126:3322:9590,LH00166:186:2372Y3LT4:8:1130:5636:20631,LH00166:186:2372Y3LT4:8:1132:45916:12602,LH00166:186:2372Y3LT4:8:1134:34153:21402,LH00166:186:2372Y3LT4:8:1135:25537:4181,LH00166:186:2372Y3LT4:8:1136:18669:7221,LH00166:186:2372Y3LT4:8:1145:11444:22509,LH00166:186:2372Y3LT4:8:1148:48893:1224,LH00166:186:2372Y3LT4:8:1150:45366:8707,LH00166:186:2372Y3LT4:8:1152:25553:26685,LH00166:186:2372Y3LT4:8:1152:46846:8917,LH00166:186:2372Y3LT4:8:1156:20586:7292,LH00166:186:2372Y3LT4:8:1156:2537:16890,LH00166:186:2372Y3LT4:8:1156:33239:7123,LH00166:186:2372Y3LT4:8:1157:43982:14858,LH00166:186:2372Y3LT4:8:1159:36758:11986,LH00166:186:2372Y3LT4:8:1159:40423:22649,LH00166:186:2372Y3LT4:8:1166:29784:4419,LH00166:186:2372Y3LT4:8:1167:26937:13303,LH00166:186:2372Y3LT4:8:1167:30278:16764,LH00166:186:2372Y3LT4:8:1170:13523:26727,LH00166:186:2372Y3LT4:8:1171:20303:29613,LH00166:186:2372Y3LT4:8:1174:25254:10360,LH00166:186:2372Y3LT4:8:1175:9130:6843,LH00166:186:2372Y3LT4:8:1176:16064:21234,LH00166:186:2372Y3LT4:8:1182:20384:2233,LH00166:186:2372Y3LT4:8:1183:1469:3915,LH00166:186:2372Y3LT4:8:1193:3209:23518,LH00166:186:2372Y3LT4:8:1194:48051:2513,LH00166:186:2372Y3LT4:8:1196:38279:6157,LH00166:186:2372Y3LT4:8:1203:15352:2345,LH00166:186:2372Y3LT4:8:1203:16225:4503,LH00166:186:2372Y3LT4:8:1204:10732:14158,LH00166:186:2372Y3LT4:8:1204:39533:17633,LH00166:186:2372Y3LT4:8:1204:39549:17633,LH00166:186:2372Y3LT4:8:1208:21565:18179,LH00166:186:2372Y3LT4:8:1209:18207:12896,LH00166:186:2372Y3LT4:8:1210:48674:29459,LH00166:186:2372Y3LT4:8:1213:40868:15937,LH00166:186:2372Y3LT4:8:1214:23741:19034,LH00166:186:2372Y3LT4:8:1215:24963:17535,LH00166:186:2372Y3LT4:8:1218:6016:22103,LH00166:186:2372Y3LT4:8:1221:9907:17773,LH00166:186:2372Y3LT4:8:1223:7221:9730,LH00166:186:2372Y3LT4:8:1224:15368:24961,LH00166:186:2372Y3LT4:8:1224:17601:9547,LH00166:186:2372Y3LT4:8:1224:36491:17408,LH00166:186:2372Y3LT4:8:1240:30326:8665,LH00166:186:2372Y3LT4:8:1242:32211:20757,LH00166:186:2372Y3LT4:8:1242:32219:20743,LH00166:186:2372Y3LT4:8:1242:44953:14746,LH00166:186:2372Y3LT4:8:1250:45204:27259,LH00166:186:2372Y3LT4:8:1253:24089:22467,LH00166:186:2372Y3LT4:8:1255:4098:23153,LH00166:186:2372Y3LT4:8:1257:32130:25241,LH00166:186:2372Y3LT4:8:1265:3872:25928,LH00166:186:2372Y3LT4:8:1269:22439:5456,LH00166:186:2372Y3LT4:8:1270:40172:3746,LH00166:186:2372Y3LT4:8:1271:40350:28660,LH00166:186:2372Y3LT4:8:1273:29711:3901,LH00166:186:2372Y3LT4:8:1277:12067:11509,LH00166:186:2372Y3LT4:8:1283:25416:3326,LH00166:186:2372Y3LT4:8:1284:13410:16329,LH00166:186:2372Y3LT4:8:1288:36361:10935,LH00166:186:2372Y3LT4:8:1293:30820:21010,LH00166:186:2372Y3LT4:8:1295:11792:16666,LH00166:186:2372Y3LT4:8:1296:1275:3578,LH00166:186:2372Y3LT4:8:1296:6801:21612,LH00166:186:2372Y3LT4:8:1298:27204:29599,LH00166:186:2372Y3LT4:8:1308:28166:25914,LH00166:186:2372Y3LT4:8:1311:37170:25872,LH00166:186:2372Y3LT4:8:1311:42291:9323,LH00166:186:2372Y3LT4:8:1313:17593:17801,LH00166:186:2372Y3LT4:8:1318:37632:7137,LH00166:186:2372Y3LT4:8:1326:40989:15194,LH00166:186:2372Y3LT4:8:1331:6582:28997,LH00166:186:2372Y3LT4:8:1332:51190:17506,LH00166:186:2372Y3LT4:8:1337:19251:17170,LH00166:186:2372Y3LT4:8:1338:7213:16974,LH00166:186:2372Y3LT4:8:1338:9163:10234,LH00166:186:2372Y3LT4:8:1341:47760:10753,LH00166:186:2372Y3LT4:8:1342:32098:22243,LH00166:186:2372Y3LT4:8:1342:35569:1154,LH00166:186:2372Y3LT4:8:1343:43473:20477,LH00166:186:2372Y3LT4:8:1343:8499:23406,LH00166:186:2372Y3LT4:8:1344:12439:8427,LH00166:186:2372Y3LT4:8:1344:24526:25522,LH00166:186:2372Y3LT4:8:1346:35302:13555,LH00166:186:2372Y3LT4:8:1354:28425:18796,LH00166:186:2372Y3LT4:8:1356:17528:9029,LH00166:186:2372Y3LT4:8:1358:21201:24022,LH00166:186:2372Y3LT4:8:1361:17220:18445,LH00166:186:2372Y3LT4:8:1363:52137:26965,LH00166:186:2372Y3LT4:8:1365:31532:25465,LH00166:186:2372Y3LT4:8:1365:40334:28941,LH00166:186:2372Y3LT4:8:1365:40342:28926,LH00166:186:2372Y3LT4:8:1365:6501:2822,LH00166:186:2372Y3LT4:8:1367:12269:11243,LH00166:186:2372Y3LT4:8:1369:32947:29319,LH00166:186:2372Y3LT4:8:1377:40455:16764,LH00166:186:2372Y3LT4:8:1377:40463:16778,LH00166:186:2372Y3LT4:8:1378:32907:14172,LH00166:186:2372Y3LT4:8:1383:31548:29305,LH00166:186:2372Y3LT4:8:1384:37850:21640,LH00166:186:2372Y3LT4:8:1386:47849:2471,LH00166:186:2372Y3LT4:8:1389:23409:3550,LH00166:186:2372Y3LT4:8:1393:2691:15419,LH00166:186:2372Y3LT4:8:1394:29145:27217,LH00166:186:2372Y3LT4:8:1396:21791:18655,LH00166:186:2372Y3LT4:8:1401:23353:18669,LH00166:186:2372Y3LT4:8:1404:10247:16035,LH00166:186:2372Y3LT4:8:1405:20295:24499,LH00166:186:2372Y3LT4:8:1406:16387:4503,LH00166:186:2372Y3LT4:8:1406:4325:1266,LH00166:186:2372Y3LT4:8:1407:23191:4881,LH00166:186:2372Y3LT4:8:1409:7318:21808,LH00166:186:2372Y3LT4:8:1411:20003:28282,LH00166:186:2372Y3LT4:8:1413:45139:12714,LH00166:186:2372Y3LT4:8:1414:38076:18109,LH00166:186:2372Y3LT4:8:1415:33530:17464,LH00166:186:2372Y3LT4:8:1415:50244:21780,LH00166:186:2372Y3LT4:8:1416:20287:23868,LH00166:186:2372Y3LT4:8:1424:43513:17184,LH00166:186:2372Y3LT4:8:1425:1105:24919,LH00166:186:2372Y3LT4:8:1425:32373:8735,LH00166:186:2372Y3LT4:8:1428:50220:16133,LH00166:186:2372Y3LT4:8:1434:13281:15825,LH00166:186:2372Y3LT4:8:1435:11994:20519,LH00166:186:2372Y3LT4:8:1436:39864:24569,LH00166:186:2372Y3LT4:8:1440:37704:25479,LH00166:186:2372Y3LT4:8:1441:14850:2177,LH00166:186:2372Y3LT4:8:1441:16242:7782,LH00166:186:2372Y3LT4:8:1442:7432:1967,LH00166:186:2372Y3LT4:8:1443:17075:27385,LH00166:186:2372Y3LT4:8:1443:7512:11243,LH00166:186:2372Y3LT4:8:1448:38465:11551,LH00166:186:2372Y3LT4:8:1448:48189:4657,LH00166:186:2372Y3LT4:8:1450:45592:9239,LH00166:186:2372Y3LT4:8:1452:39961:4447,LH00166:186:2372Y3LT4:8:1452:49281:11061,LH00166:186:2372Y3LT4:8:1454:32705:16119,LH00166:186:2372Y3LT4:8:1454:34525:13891,LH00166:186:2372Y3LT4:8:1454:9721:22411,LH00166:186:2372Y3LT4:8:1457:16064:15433,LH00166:186:2372Y3LT4:8:1459:36693:29081,LH00166:186:2372Y3LT4:8:1460:16428:13933,LH00166:186:2372Y3LT4:8:1460:16436:13947,LH00166:186:2372Y3LT4:8:1467:23717:3494,LH00166:186:2372Y3LT4:8:1473:19510:24148,LH00166:186:2372Y3LT4:8:1478:38230:25970,LH00166:186:2372Y3LT4:8:1482:23660:16315,LH00166:186:2372Y3LT4:8:1487:24461:21962,LH00166:186:2372Y3LT4:8:1488:13531:4181,LH00166:186:2372Y3LT4:8:1489:39266:23868,LH00166:186:2372Y3LT4:8:1489:6453:27988,LH00166:186:2372Y3LT4:8:1493:42639:13121,LH00166:186:2372Y3LT4:8:1496:34776:1827,LH00166:186:2372Y3LT4:8:1498:25634:1911,LH00166:186:2372Y3LT4:8:2102:37858:19776,LH00166:186:2372Y3LT4:8:2104:44597:29123,LH00166:186:2372Y3LT4:8:2104:44613:29123,LH00166:186:2372Y3LT4:8:2108:9705:12378,LH00166:186:2372Y3LT4:8:2109:29218:8763,LH00166:186:2372Y3LT4:8:2110:1769:23378,LH00166:186:2372Y3LT4:8:2110:2561:11131,LH00166:186:2372Y3LT4:8:2111:5304:11201,LH00166:186:2372Y3LT4:8:2114:27365:8441,LH00166:186:2372Y3LT4:8:2114:4649:20099,LH00166:186:2372Y3LT4:8:2116:3629:5834,LH00166:186:2372Y3LT4:8:2118:25674:14340,LH00166:186:2372Y3LT4:8:2121:35811:15783,LH00166:186:2372Y3LT4:8:2123:47946:16568,LH00166:186:2372Y3LT4:8:2124:33821:9926,LH00166:186:2372Y3LT4:8:2128:13815:2990,LH00166:186:2372Y3LT4:8:2135:21816:26264,LH00166:186:2372Y3LT4:8:2136:23676:7740,LH00166:186:2372Y3LT4:8:2139:45244:11803,LH00166:186:2372Y3LT4:8:2142:24226:14662,LH00166:186:2372Y3LT4:8:2144:11169:8356,LH00166:186:2372Y3LT4:8:2150:15230:8132,LH00166:186:2372Y3LT4:8:2150:15238:8118,LH00166:186:2372Y3LT4:8:2150:15255:8118,LH00166:186:2372Y3LT4:8:2152:28385:2247,LH00166:186:2372Y3LT4:8:2152:47267:8665,LH00166:186:2372Y3LT4:8:2154:33077:13205,LH00166:186:2372Y3LT4:8:2154:34201:15321,LH00166:186:2372Y3LT4:8:2155:18183:10697,LH00166:186:2372Y3LT4:8:2159:33376:20729,LH00166:186:2372Y3LT4:8:2162:39241:24695,LH00166:186:2372Y3LT4:8:2173:25124:21626,LH00166:186:2372Y3LT4:8:2177:44678:1967,LH00166:186:2372Y3LT4:8:2178:24930:3326,LH00166:186:2372Y3LT4:8:2178:39290:6311,LH00166:186:2372Y3LT4:8:2179:45252:21262,LH00166:186:2372Y3LT4:8:2183:5272:28492,LH00166:186:2372Y3LT4:8:2184:45746:4741,LH00166:186:2372Y3LT4:8:2185:26783:14606,LH00166:186:2372Y3LT4:8:2185:49540:17086,LH00166:186:2372Y3LT4:8:2187:21128:3802,LH00166:186:2372Y3LT4:8:2188:43230:1841,LH00166:186:2372Y3LT4:8:2188:45204:7586,LH00166:186:2372Y3LT4:8:2189:25804:28941,LH00166:186:2372Y3LT4:8:2197:29339:17857,LH00166:186:2372Y3LT4:8:2201:4608:20141,LH00166:186:2372Y3LT4:8:2204:41013:15489,LH00166:186:2372Y3LT4:8:2210:32794:25297,LH00166:186:2372Y3LT4:8:2211:23466:6311,LH00166:186:2372Y3LT4:8:2213:22722:4881,LH00166:186:2372Y3LT4:8:2215:30318:3662,LH00166:186:2372Y3LT4:8:2220:24073:16021,LH00166:186:2372Y3LT4:8:2220:51020:24555,LH00166:186:2372Y3LT4:8:2221:27058:6619,LH00166:186:2372Y3LT4:8:2222:30884:2121,LH00166:186:2372Y3LT4:8:2222:49767:5288,LH00166:186:2372Y3LT4:8:2223:37939:15657,LH00166:186:2372Y3LT4:8:2227:17156:11355,LH00166:186:2372Y3LT4:8:2227:17164:11341,LH00166:186:2372Y3LT4:8:2229:46086:13737,LH00166:186:2372Y3LT4:8:2230:13095:12476,LH00166:186:2372Y3LT4:8:2230:35164:20631,LH00166:186:2372Y3LT4:8:2233:24712:19202,LH00166:186:2372Y3LT4:8:2234:41215:7179,LH00166:186:2372Y3LT4:8:2237:21282:9141,LH00166:186:2372Y3LT4:8:2237:21290:9155,LH00166:186:2372Y3LT4:8:2237:24307:25900,LH00166:186:2372Y3LT4:8:2240:35407:28870,LH00166:186:2372Y3LT4:8:2245:17657:23490,LH00166:186:2372Y3LT4:8:2246:50915:6297,LH00166:186:2372Y3LT4:8:2250:34040:17506,LH00166:186:2372Y3LT4:8:2250:34056:17506,LH00166:186:2372Y3LT4:8:2256:36944:29291,LH00166:186:2372Y3LT4:8:2258:18960:10781,LH00166:186:2372Y3LT4:8:2258:18976:10781,LH00166:186:2372Y3LT4:8:2262:40253:28268,LH00166:186:2372Y3LT4:8:2263:11590:8889,LH00166:186:2372Y3LT4:8:2268:43934:16063,LH00166:186:2372Y3LT4:8:2268:49459:7137,LH00166:186:2372Y3LT4:8:2270:21840:17647,LH00166:186:2372Y3LT4:8:2270:21848:17633,LH00166:186:2372Y3LT4:8:2270:31904:13415,LH00166:186:2372Y3LT4:8:2270:43828:15685,LH00166:186:2372Y3LT4:8:2273:22269:25143,LH00166:186:2372Y3LT4:8:2278:1736:12644,LH00166:186:2372Y3LT4:8:2283:3654:19861,LH00166:186:2372Y3LT4:8:2287:46514:13639,LH00166:186:2372Y3LT4:8:2293:37890:3634,LH00166:186:2372Y3LT4:8:2295:37251:4013,LH00166:186:2372Y3LT4:8:2295:7521:29557,LH00166:186:2372Y3LT4:8:2297:51320:16161,LH00166:186:2372Y3LT4:8:2310:21306:4699,LH00166:186:2372Y3LT4:8:2310:3953:1631,LH00166:186:2372Y3LT4:8:2310:51101:23434,LH00166:186:2372Y3LT4:8:2314:27568:20645,LH00166:186:2372Y3LT4:8:2314:27576:20631,LH00166:186:2372Y3LT4:8:2316:29428:5260,LH00166:186:2372Y3LT4:8:2321:9446:3158,LH00166:186:2372Y3LT4:8:2325:18491:16189,LH00166:186:2372Y3LT4:8:2325:8588:16385,LH00166:186:2372Y3LT4:8:2328:39379:14003,LH00166:186:2372Y3LT4:8:2337:2788:28450,LH00166:186:2372Y3LT4:8:2339:12407:1196,LH00166:186:2372Y3LT4:8:2339:28158:16932,LH00166:186:2372Y3LT4:8:2340:49734:6801,LH00166:186:2372Y3LT4:8:2342:22616:9968,LH00166:186:2372Y3LT4:8:2342:22625:9954,LH00166:186:2372Y3LT4:8:2342:29234:7053,LH00166:186:2372Y3LT4:8:2342:4082:6339,LH00166:186:2372Y3LT4:8:2347:12172:21612,LH00166:186:2372Y3LT4:8:2350:33150:28128,LH00166:186:2372Y3LT4:8:2350:38174:6227,LH00166:186:2372Y3LT4:8:2350:41757:20673,LH00166:186:2372Y3LT4:8:2350:48682:9211,LH00166:186:2372Y3LT4:8:2356:10401:12154,LH00166:186:2372Y3LT4:8:2357:40730:27609,LH00166:186:2372Y3LT4:8:2358:24712:24891,LH00166:186:2372Y3LT4:8:2363:50891:11803,LH00166:186:2372Y3LT4:8:2364:31281:29459,LH00166:186:2372Y3LT4:8:2375:3152:14228,LH00166:186:2372Y3LT4:8:2379:10198:5722,LH00166:186:2372Y3LT4:8:2379:23506:6997,LH00166:186:2372Y3LT4:8:2382:23239:5078,LH00166:186:2372Y3LT4:8:2392:22681:9576,LH00166:186:2372Y3LT4:8:2415:11323:27735,LH00166:186:2372Y3LT4:8:2425:48699:11453,LH00166:186:2372Y3LT4:8:2433:2513:3873,LH00166:186:2372Y3LT4:8:2445:1647:26054,LH00166:186:2372Y3LT4:8:2480:41482:3382,LH00166:186:2372Y3LT4:8:2498:10684:7796	in-frame	Ig-like_domain_from_next_to_BRCA1_gene(100%),UBA-like_domain(100%)|Protein_kinase_domain(49%)	CDS	CDS/splice-site	1	125	-/-	-/-	.	126	ENST00000374026	ENST00000613048	translocation	0.005050505050505051	0.0462620281273131	0.025656266588909075																																						659_bdp	Arriba
fp_audit	659_bdp	fusion	FGFR2--ILRUN	ILRUN--FGFR2	FGFR2--ILRUN	FP	FP		Arriba		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr10	ILRUN	FGFR2	34606801	121488113	chr6:34606801-chr10:121488113	-,-	STAR-Fusion	1	0	127	0.7569	127	FAIL	in-frame	ILRUN--FGFR2	FGFR2--ILRUN	"[""INTERCHROMOSOMAL[chr6--chr10]""]"											INCL_NON_REF_SPLICE	YES_LDAS	1.8892	False	False	False	GT	AG	127		True	Does not meet inclusion criteria																																									0	ENST00000374023.8	1-615	ENST00000369061.8	1528-2130	0.7569	FAIL	atggagggcatggacgtagacctggacccggagctgatgcagaagttcagctgcctgggcaccaccgacaaggacgtgctcatctccgagttccagaggctgctcggcttccagctcaatcctgccggttgcgccttcttcctggacatgaccaactggaacctacaagcagcaattggcgcctattatgactttgagagcccaaacatcagtgtgccctctatgtcctttgttgaagatgtcaccataggagaaggggagtcaatacctccggatactcagtttgtaaaaacatggcggatccagaattctggggcagaggcctggcctccaggggtttgtcttaaatatgtcgggggagaccaatttggacatgtgaacatggtgatggtgagatcgctagagccccaagagattgcagatgtcagcgtccagatgtgcagccccagcagagcaggaatgtatcagggacagtggcggatgtgcactgctacaggactctactatggagatgtcatctgggtgattctcagtgtggaggtgggtggacttttaggagtaacgcagcagctgtcatcttttgaaacggagttcaacacacagccgcatcgtaagTGTATTCATCGAGATTTAGCAGCCAGAAATGTTTTGGTAACAGAAAACAATGTGATGAAAATAGCAGACTTTGGACTCGCCAGAGATATCAACAATATAGACTATTACAAAAAGACCACCAATGGGCGGCTTCCAGTCAAGTGGATGGCTCCAGAAGCCCTGTTTGATAGAGTATACACTCATCAGAGTGATGTCTGGTCCTTCGGGGTGTTAATGTGGGAGATCTTCACTTTAGGGGGCTCGCCCTACCCAGGGATTCCCGTGGAGGAACTTTTTAAGCTGCTGAAGGAAGGACACAGAATGGATAAGCCAGCCAACTGCACCAACGAACTGTACATGATGATGAGGGACTGTTGGCATGCAGTGCCCTCCCAGAGACCAACGTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACTCTCACAACCAATGAGGAATACTTGGACCTCAGCCAACCTCTCGAACAGTATTCACCTAGTTACCCTGACACAAGAAGTTCTTGTTCTTCAGGAGATGATTCTGTTTTTTCTCCAGACCCCATGCCTTACGAACCATGCCTTCCTCAGTATCCACACATAAACGGCAGTGTTAAAACATGA	chr6|-|[2]34606801-34606904[1]|[0]34646601-34646798[1]|[0]34654625-34654779[2]|[1]34696446-34696603[0]<==>chr10|-|[2]121479857-121480021[0]|[2]121483698-121483803[2]|[1]121485395-121485532[2]|[1]121487354-121487424[0]|[2]121487991-121488113[0]	MEGMDVDLDPELMQKFSCLGTTDKDVLISEFQRLLGFQLNPAGCAFFLDMTNWNLQAAIGAYYDFESPNISVPSMSFVEDVTIGEGESIPPDTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVEVGGLLGVTQQLSSFETEFNTQPHRKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTNEEYLDLSQPLEQYSPSYPDTRSSCSSGDDSVFSPDPMPYEPCLPQYPHINGSVKT*	ILRUN--FGFR2	127	LH00166:186:2372Y3LT4:8:1103:13669:26418,LH00166:186:2372Y3LT4:8:1103:8054:28856,LH00166:186:2372Y3LT4:8:1107:13734:11874,LH00166:186:2372Y3LT4:8:1110:45446:25970,LH00166:186:2372Y3LT4:8:1111:36976:15699,LH00166:186:2372Y3LT4:8:1113:26540:11832,LH00166:186:2372Y3LT4:8:1115:51142:19496,LH00166:186:2372Y3LT4:8:1116:42162:8483,LH00166:186:2372Y3LT4:8:1117:46644:19692,LH00166:186:2372Y3LT4:8:1118:31847:2051,LH00166:186:2372Y3LT4:8:1118:51417:4923,LH00166:186:2372Y3LT4:8:1119:36758:9351,LH00166:186:2372Y3LT4:8:1119:9899:4475,LH00166:186:2372Y3LT4:8:1121:33595:2667,LH00166:186:2372Y3LT4:8:1124:3751:23588,LH00166:186:2372Y3LT4:8:1126:3322:9590,LH00166:186:2372Y3LT4:8:1130:5636:20631,LH00166:186:2372Y3LT4:8:1132:45916:12602,LH00166:186:2372Y3LT4:8:1136:18669:7221,LH00166:186:2372Y3LT4:8:1145:11444:22509,LH00166:186:2372Y3LT4:8:1148:48893:1224,LH00166:186:2372Y3LT4:8:1150:45366:8707,LH00166:186:2372Y3LT4:8:1152:25553:26685,LH00166:186:2372Y3LT4:8:1152:46846:8917,LH00166:186:2372Y3LT4:8:1156:20586:7292,LH00166:186:2372Y3LT4:8:1156:2537:16890,LH00166:186:2372Y3LT4:8:1156:33239:7123,LH00166:186:2372Y3LT4:8:1157:43982:14858,LH00166:186:2372Y3LT4:8:1159:36758:11986,LH00166:186:2372Y3LT4:8:1166:29784:4419,LH00166:186:2372Y3LT4:8:1167:26937:13303,LH00166:186:2372Y3LT4:8:1167:30278:16764,LH00166:186:2372Y3LT4:8:1170:13523:26727,LH00166:186:2372Y3LT4:8:1174:25254:10360,LH00166:186:2372Y3LT4:8:1175:9130:6843,LH00166:186:2372Y3LT4:8:1176:16064:21234,LH00166:186:2372Y3LT4:8:1183:1469:3915,LH00166:186:2372Y3LT4:8:1193:3209:23518,LH00166:186:2372Y3LT4:8:1194:48051:2513,LH00166:186:2372Y3LT4:8:1196:38279:6157,LH00166:186:2372Y3LT4:8:1203:15352:2345,LH00166:186:2372Y3LT4:8:1203:16225:4503,LH00166:186:2372Y3LT4:8:1204:10732:14158,LH00166:186:2372Y3LT4:8:1204:39533:17633,LH00166:186:2372Y3LT4:8:1210:48674:29459,LH00166:186:2372Y3LT4:8:1214:23741:19034,LH00166:186:2372Y3LT4:8:1215:24963:17535,LH00166:186:2372Y3LT4:8:1221:9907:17773,LH00166:186:2372Y3LT4:8:1223:7221:9730,LH00166:186:2372Y3LT4:8:1224:15368:24961,LH00166:186:2372Y3LT4:8:1224:17601:9547,LH00166:186:2372Y3LT4:8:1224:36491:17408,LH00166:186:2372Y3LT4:8:1240:30326:8665,LH00166:186:2372Y3LT4:8:1242:32211:20757,LH00166:186:2372Y3LT4:8:1242:44953:14746,LH00166:186:2372Y3LT4:8:1250:45204:27259,LH00166:186:2372Y3LT4:8:1255:4098:23153,LH00166:186:2372Y3LT4:8:1265:3872:25928,LH00166:186:2372Y3LT4:8:1277:12067:11509,LH00166:186:2372Y3LT4:8:1288:36361:10935,LH00166:186:2372Y3LT4:8:1293:30820:21010,LH00166:186:2372Y3LT4:8:1296:1275:3578,LH00166:186:2372Y3LT4:8:1298:27204:29599,LH00166:186:2372Y3LT4:8:1308:28166:25914,LH00166:186:2372Y3LT4:8:1313:17593:17801,LH00166:186:2372Y3LT4:8:1326:40989:15194,LH00166:186:2372Y3LT4:8:1331:6582:28997,LH00166:186:2372Y3LT4:8:1332:51190:17506,LH00166:186:2372Y3LT4:8:1337:19251:17170,LH00166:186:2372Y3LT4:8:1338:9163:10234,LH00166:186:2372Y3LT4:8:1342:32098:22243,LH00166:186:2372Y3LT4:8:1343:8499:23406,LH00166:186:2372Y3LT4:8:1344:24526:25522,LH00166:186:2372Y3LT4:8:1354:28425:18796,LH00166:186:2372Y3LT4:8:1356:17528:9029,LH00166:186:2372Y3LT4:8:1358:21201:24022,LH00166:186:2372Y3LT4:8:1367:12269:11243,LH00166:186:2372Y3LT4:8:1378:32907:14172,LH00166:186:2372Y3LT4:8:1384:37850:21640,LH00166:186:2372Y3LT4:8:1394:29145:27217,LH00166:186:2372Y3LT4:8:1401:23353:18669,LH00166:186:2372Y3LT4:8:1404:10247:16035,LH00166:186:2372Y3LT4:8:1405:20295:24499,LH00166:186:2372Y3LT4:8:1406:16387:4503,LH00166:186:2372Y3LT4:8:1406:4325:1266,LH00166:186:2372Y3LT4:8:1416:20287:23868,LH00166:186:2372Y3LT4:8:1425:1105:24919,LH00166:186:2372Y3LT4:8:1434:13281:15825,LH00166:186:2372Y3LT4:8:1435:11994:20519,LH00166:186:2372Y3LT4:8:1440:37704:25479,LH00166:186:2372Y3LT4:8:1442:7432:1967,LH00166:186:2372Y3LT4:8:1443:7512:11243,LH00166:186:2372Y3LT4:8:1452:49281:11061,LH00166:186:2372Y3LT4:8:1488:13531:4181,LH00166:186:2372Y3LT4:8:1489:39266:23868,LH00166:186:2372Y3LT4:8:1493:42639:13121,LH00166:186:2372Y3LT4:8:2128:13815:2990,LH00166:186:2372Y3LT4:8:2152:28385:2247,LH00166:186:2372Y3LT4:8:2155:18183:10697,LH00166:186:2372Y3LT4:8:2159:33376:20729,LH00166:186:2372Y3LT4:8:2173:25124:21626,LH00166:186:2372Y3LT4:8:2178:24930:3326,LH00166:186:2372Y3LT4:8:2184:45746:4741,LH00166:186:2372Y3LT4:8:2187:21128:3802,LH00166:186:2372Y3LT4:8:2215:30318:3662,LH00166:186:2372Y3LT4:8:2222:30884:2121,LH00166:186:2372Y3LT4:8:2229:46086:13737,LH00166:186:2372Y3LT4:8:2234:41215:7179,LH00166:186:2372Y3LT4:8:2262:40253:28268,LH00166:186:2372Y3LT4:8:2268:43934:16063,LH00166:186:2372Y3LT4:8:2273:22269:25143,LH00166:186:2372Y3LT4:8:2339:12407:1196,LH00166:186:2372Y3LT4:8:2339:28158:16932,LH00166:186:2372Y3LT4:8:2350:33150:28128,LH00166:186:2372Y3LT4:8:2350:41757:20673,LH00166:186:2372Y3LT4:8:2350:48682:9211,LH00166:186:2372Y3LT4:8:2358:24712:24891,LH00166:186:2372Y3LT4:8:2364:31281:29459,LH00166:186:2372Y3LT4:8:2379:23506:6997,LH00166:186:2372Y3LT4:8:2382:23239:5078,LH00166:186:2372Y3LT4:8:2392:22681:9576,LH00166:186:2372Y3LT4:8:2415:11323:27735,LH00166:186:2372Y3LT4:8:2425:48699:11453,LH00166:186:2372Y3LT4:8:2433:2513:3873,LH00166:186:2372Y3LT4:8:2445:1647:26054,LH00166:186:2372Y3LT4:8:2480:41482:3382,LH00166:186:2372Y3LT4:8:2498:10684:7796	YES_LDAS	GT	1.9329	chr6:34606801:-	ILRUN^ENSG00000196821.10	UBA_4|26-65|2.8e-14^N_BRCA1_IG|82-179|4e-35	.	INFRAME	AG	1.8892	chr10:121488113:-	FGFR2^ENSG00000066468.23	0	.	INCL_NON_REF_SPLICE		"[""INTERCHROMOSOMAL[chr6--chr10]""]"		False	chr6:34606801-chr10:121488113	127.0	0.0	Does not meet inclusion criteria	127	659_bdp	STAR-Fusion
fp_audit	659_bdp	fusion	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FP	FP		Arriba		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	PLEKHA4	121496532	48867626	chr10:121496532-chr19:48867626	-,-	Arriba	1	0	4		4	PASS	in-frame	FGFR2--PLEKHA4	FGFR2--PLEKHA4	confidence:medium;duplicates(3)	medium	translocation	CDS/splice-site	5'UTR/splice-site	1851	1126	3.0	0.0	0.0	0.0									1	3	True	duplicates(3)		FAIL		False	chr10:121496532	chr19:48867626	chr10:121496532-chr19:48867626	.	.	medium	1851	1126	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	duplicates(3)	TTCTGATCTGGTGTCAGAGATGGAGATGATGAAGATGATTGGGAAACACAAGAATATCATAAATCTTCTTGGAGCCTGCACACAGGATG___GGCCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAATACCTCCGAGCC...CGGGATGGAGTACTCCTATGACATTAACCGTGTTCCTGAGGAGCAGATGACCTTCAAGGACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAA|CCCTTGATGGAGGGGAGCCGACCTCGCAGCAGCCTGAGCCTGGCCAGCAGCGCCTCCACCATCTCCTCGCTCAGCAGCCTGAGCCCCAAG___AAGCCCACCCGGGCAGTAAACAAGgTC	FGFR2	PLEKHA4	ENSG00000066468	ENSG00000105559	GMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK|plMEGSRPRSSLSLASSASTISSLSSLSPKKPTRAVNK	LH00166:186:2372Y3LT4:8:1488:37591:1771,LH00166:186:2372Y3LT4:8:1304:26532:13527,LH00166:186:2372Y3LT4:8:1304:26548:13527,LH00166:186:2372Y3LT4:8:1368:50915:5820,LH00166:186:2372Y3LT4:8:1451:13483:22565,LH00166:186:2372Y3LT4:8:2284:27503:15741,LH00166:186:2372Y3LT4:8:2330:2634:9856	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(50%)|PH_domain(100%)	CDS/splice-site	5'UTR/splice-site	1	3	-/-	-/-	.	4	ENST00000613048	ENST00000263265	translocation	0.0005399568034557236	0.002657218777679362	0.001598587790567543																																						659_bdp	Arriba
fp_audit	659_bdp	fusion	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FP	FP		Arriba		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	PLEKHA4	121496532	48861692	chr10:121496532-chr19:48861692	-,-	Arriba	1	0	1		1	PASS	in-frame	FGFR2--PLEKHA4	FGFR2--PLEKHA4	confidence:low	low	translocation	CDS/splice-site	CDS/splice-site	1851	758													0	1	True			FAIL		False	chr10:121496532	chr19:48861692	chr10:121496532-chr19:48861692	.	.	low	1851	758	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CTTCAAGGACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAA|GACAGCTCGGGGCTCCGTCTCTGGAAACGCCGCTGGTTCGTCCTCTCCGGCCATTGCCTCTTTTATTACAAGG	FGFR2	PLEKHA4	ENSG00000066468	ENSG00000105559	FKDLVSCTYQLARGMEYLASQK|DSSGLRLWKRRWFVLSGHCLFYYK	LH00166:186:2372Y3LT4:8:2212:47129:9183	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(50%)|PH_domain(89%)	CDS/splice-site	CDS/splice-site	0	1	-/-	-/-	.	1	ENST00000613048	ENST00000263265	translocation	0.0	0.0013175230566534915	0.0006587615283267457																																						659_bdp	Arriba
fp_audit	659_bdp	fusion	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FP	FP		Arriba		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	PLEKHA4	121496532	48867626	chr10:121496532-chr19:48867626	-,-	STAR-Fusion	1	0	4	0.0238	4	FAIL		FGFR2--PLEKHA4	FGFR2--PLEKHA4	"[""INTERCHROMOSOMAL[chr10--chr19]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8295	False	False	False	GT	AG	4			Read count too low: 4 < 8																																									0	.	.	.	.	0.0238	FAIL	.	.	.	FGFR2--PLEKHA4	4	LH00166:186:2372Y3LT4:8:1304:26532:13527,LH00166:186:2372Y3LT4:8:1488:37591:1771,LH00166:186:2372Y3LT4:8:2284:27503:15741,LH00166:186:2372Y3LT4:8:2330:2634:9856	YES_LDAS	GT	1.9329	chr10:121496532:-	FGFR2^ENSG00000066468.23	.	.	.	AG	1.8295	chr19:48867626:-	PLEKHA4^ENSG00000105559.12	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr10--chr19]""]"		False	chr10:121496532-chr19:48867626	4.0	0.0	Read count too low: 4 < 8	4	659_bdp	STAR-Fusion
fp_audit	659_bdp	fusion	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FGFR2--PLEKHA4	FP	FP		Arriba		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	PLEKHA4	121496532	48861692	chr10:121496532-chr19:48861692	-,-	STAR-Fusion	1	0	1	0.006	1	FAIL	in-frame	FGFR2--PLEKHA4	FGFR2--PLEKHA4	"[""INTERCHROMOSOMAL[chr10--chr19]""]"											ONLY_REF_SPLICE	YES_LDAS	1.8323	False	False	False	GT	AG	1		True	Read count too low: 1 < 8																																									0	ENST00000369056.5	1-1866	ENST00000263265.11	193-2340	0.006	FAIL	atggtcagctggggtcgtttcatctgcctggtcgtggtcaccatggcaaccttgtccctggcccggccctccttcagtttagttgaggataccacattagagccagaagagccaccaaccaaataccaaatctctcaaccagaagtgtacgtggctgcgccaggggagtcgctagaggtgcgctgcctgttgaaagatgccgccgtgatcagttggactaaggatggggtgcacttggggcccaacaataggacagtgcttattggggagtacttgcagataaagggcgccacgcctagagactccggcctctatgcttgtactgccagtaggactgtagacagtgaaacttggtacttcatggtgaatgtcacagatgccatctcatccggagatgatgaggatgacaccgatggtgcggaagattttgtcagtgagaacagtaacaacaagagagcaccatactggaccaacacagaaaagatggaaaagcggctccatgctgtgcctgcggccaacactgtcaagtttcgctgcccagccggggggaacccaatgccaaccatgcggtggctgaaaaacgggaaggagtttaagcaggagcatcgcattggaggctacaaggtacgaaaccagcactggagcctcattatggaaagtgtggtcccatctgacaagggaaattatacctgtgtagtggagaatgaatacgggtccatcaatcacacgtaccacctggatgttgtggagcgatcgcctcaccggcccatcctccaagccggactgccggcaaatgcctccacagtggtcggaggagacgtagagtttgtctgcaaggtttacagtgatgcccagccccacatccagtggatcaagcacgtggaaaagaacggcagtaaatacgggcccgacgggctgccctacctcaaggttctcaagcactcggggataaatagttccaatgcagaagtgctggctctgttcaatgtgaccgaggcggatgctggggaatatatatgtaaggtctccaattatatagggcaggccaaccagtctgcctggctcactgtcctgccaaaacagcaagcgcctggaagagaaaaggagattacagcttccccagactacctggagatagccatttactgcataggggtcttcttaatcgcctgtatggtggtaacagtcatcctgtgccgaatgaagaacacgaccaagaagccagacttcagcagccagccggctgtgcacaagctgaccaaacgtatccccctgcggagacaggtaacagtttcggctgagtccagctcctccatgaactccaacaccccgctggtgaggataacaacacgcctctcttcaacggcagacacccccatgctggcaggggtctccgagtatgaacttccagaggacccaaaatgggagtttccaagagataagctgacactgggcaagcccctgggagaaggttgctttgggcaagtggtcatggcggaagcagtgggaattgacaaagacaagcccaaggaggcggtcaccgtggccgtgaagatgttgaaagatgatgccacagagaaagacctttctgatctggtgtcagagatggagatgatgaagatgattgggaaacacaagaatatcataaatcttcttggagcctgcacacaggatgggcctctctatgtcatagttgagtatgcctctaaaggcaacctccgagaatacctccgagcccggaggccacccgggatggagtactcctatgacattaaccgtgttcctgaggagcagatgaccttcaaggacttggtgtcatgcacctaccagctggccagaggcatggagtacttggcttcccaaaaaGACAGCTCGGGGCTCCGTCTCTGGAAACGCCGCTGGTTCGTCCTCTCCGGCCATTGCCTCTTTTATTACAAGGACAGCCGCGAGGAGAGTGTCCTAGGCAGCGTCCTGCTCCCCAGCTACAATATTAGACCAGATGGGCCGGGAGCCCCCCGAGGGCGGCGCTTCACCTTCACCGCAGAGCACCCGGGCATGAGGACCTACGTTTTGGCCGCTGACACCTTAGAAGACCTGCGGGGCTGGCTACGGGCGCTGGGCCGGGCCTCCCGTGCGGAGGGGGACGACTATGGGCAACCCAGGTCACCTGCACGACCCCAGCCCGGGGAGGGCCCCGGCGGCCCCGGTGGTCCCCCGGAGGTGAGCAGAGGGGAAGAGGGGCGCATCTCAGAATCACCGGAAGTGACTCGACTCTCCAGAGGTCGTGGTAGACCCAGGCTGCTCACTCCCAGCCCCACAACCGACCTCCACTCTGGACTCCAGATGCGGAGGGCGAGGAGCCCCGACCTGTTCACCCCCCTCTCTCGCCCTCCCTCGCCTCTGAGCCTCCCCCGTCCCCGTTCTGCCCCTGCGCGGCGACCCCCTGCCCCCTCAGGAGACACAGCACCCCCTGCCCGACCTCACACCCCGTTGAGTCGCATTGATGTCCGACCTCCTCTGGATTGGGGCCCCCAACGCCAGACCCTCTCCCGACCCCCTACTCCCCGCCGAGGACCTCCCTCTGAGGCTGGGGGAGGAAAGCCCCCCAGGAGTCCCCAGCACTGGAGTCAGGAGCCCAGAACACAGGCACACTCTGGCTCCCCCACTTATCTCCAGCTCCCCCCGCGGCCCCCTGGGACCCGGGCCTCCATGGTTTTATTGCCGGGTCCTCCCCTGGAGTCAACTTTCCACCAAAGCTTGGAGACAGATACGCTGCTGACCAAGTTGTGCGGGCAGGACCGGCTTCTGCGGAGGCTGCAGGAGGAGATAGACCAGAAGCAGGAGGAGAAGGAGCAACTAGAAGCAGCTCTGGAGTTGACCCGGCAACAGCTGGGCCAAGCCACCAGGGAGGCTGGGGCTCCCGGGAGGGCCTGGGGTCGCCAGCGCCTCTTGCAGGACCGGCTGGTCAGTGTGAGGGCCACCCTCTGTCACTTGACTCAGGAGCGAGAGAGGGTTTGGGACACGTACAGTGGCCTGGAGCAGGAGCTGGGCACCTTAAGAGAGACGCTGGAGTACCTGCTGCACCTTGGTTCTCCCCAGGACAGAGTGTCTGCTCAGCAGCAGCTGTGGATGGTGGAAGACACGCTGGCAGGTCTGGGTGGCCCCCAGAAACCGCCCCCACACACTGAGCCTGACTCCCCATCTCCCGTGCTCCAGGGCGAGGAGTCCTCAGAGAGGGAGAGCCTGCCAGAGTCCTTGGAACTGAGCTCCCCTAGGTCCCCCGAGACTGACTGGGGGCGGCCTCCTGGAGGCGACAAAGACCTCGCCAGCCCTCACTTAGGTCTTGGGTCTCCGAGGGTCTCCCGGGCTTCCAGCCCTGAGGGTCGCCACCTCCCTTCCCCACAGCTAGGAACCAAGGCCCCGGTGGCCCGGCCCCGGATGAGTGCCCAGGAGCAGCTGGAGCGGATGCGCAGAAACCAGGAATGTGGACGGCCCTTCCCTCGCCCGACCTCCCCCCGGCTTCTCACCCTGGGAAGGACACTGTCCCCAGCCAGACGCCAGCCTGACGTGGAGCAAAGGCCTGTCGTAGGACACTCGGGAGCCCAGAAATGGCTCAGAAGCTCTGGGTCCTGGAGTAGTCCAAGGAACACCACCCCTTACTTGCCGACTTCCGAAGGTCACCGGGAGCGGGTTCTCAGCCTCTCCCAAGCCCTGGCTACTGAGGCGTCGCAGTGGCACAGAATGATGACAGGTGGAAATTTGGACTCCCAGGGAGACCCTCTTCCCGGTGTGCCGCTGCCTCCTTCGGACCCCACGCGCCAGGAGACCCCTCCCCCCAGATCTCCCCCGGTGGCTAATTCGGGTTCCACGGGGTTCTCTCGCCGAGGGAGTGGGCGTGGAGGAGGTCCCACCCCCTGGGGGCCCGCGTGGGATGCCGGGATCGCCCCTCCGGTCCTGCCACAAGACGAGGGGGCATGGCCTCTGCGAGTCACTCTGCTACAATCCAGCTTCTAA	chr10|-|[2]121496532-121496722[1]|[0]121498495-121498605[1]|[0]121500826-121500947[2]|[1]121503790-121503941[0]|[2]121515117-121515319[1]|[0]121518682-121518829[0]|[2]121519979-121520169[1]|[0]121538592-121538715[0]|[2]121551290-121551459[1]|[0]121564502-121564579[1]|[0]121565438-121565704[1]|[0]121593709-121593817[0]<==>chr19|-|[2]48837289-48837551[1]|[0]48838017-48838129[2]|[1]48839205-48839263[0]|[2]48841149-48841310[0]|[2]48845370-48845446[1]|[0]48845517-48845616[0]|[2]48847900-48848040[0]|[2]48852228-48852326[0]|[2]48853682-48853831[0]|[2]48854007-48854087[0]|[2]48854217-48854264[0]|[2]48857422-48857496[0]|[2]48858860-48859139[2]|[1]48859469-48859684[2]|[1]48860350-48860459[0]|[2]48861401-48861501[1]|[0]48861620-48861692[0]	MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPEEPPTKYQISQPEVYVAAPGESLEVRCLLKDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTASRTVDSETWYFMVNVTDAISSGDDEDDTDGAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIAIYCIGVFLIACMVVTVILCRMKNTTKKPDFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYGQPRSPARPQPGEGPGGPGGPPEVSRGEEGRISESPEVTRLSRGRGRPRLLTPSPTTDLHSGLQMRRARSPDLFTPLSRPPSPLSLPRPRSAPARRPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQAHSGSPTYLQLPPRPPGTRASMVLLPGPPLESTFHQSLETDTLLTKLCGQDRLLRRLQEEIDQKQEEKEQLEAALELTRQQLGQATREAGAPGRAWGRQRLLQDRLVSVRATLCHLTQERERVWDTYSGLEQELGTLRETLEYLLHLGSPQDRVSAQQQLWMVEDTLAGLGGPQKPPPHTEPDSPSPVLQGEESSERESLPESLELSSPRSPETDWGRPPGGDKDLASPHLGLGSPRVSRASSPEGRHLPSPQLGTKAPVARPRMSAQEQLERMRRNQECGRPFPRPTSPRLLTLGRTLSPARRQPDVEQRPVVGHSGAQKWLRSSGSWSSPRNTTPYLPTSEGHRERVLSLSQALATEASQWHRMMTGGNLDSQGDPLPGVPLPPSDPTRQETPPPRSPPVANSGSTGFSRRGSGRGGGPTPWGPAWDAGIAPPVLPQDEGAWPLRVTLLQSSF*	FGFR2--PLEKHA4	1	LH00166:186:2372Y3LT4:8:2212:47129:9183	YES_LDAS	GT	1.9329	chr10:121496532:-	FGFR2^ENSG00000066468.23	FGFR3_TM|7-13|5.6^C2-set_2|44-79|0.23^Ig_3|45-110|6.4e-10^I-set|46-121|6.5e-08^Ig_2|46-113|1e-07^V-set|47-75|0.87^ig|49-119|3e-06^Ig_5|51-120|9.7e-05^Ig_4|57-113|0.0016^Ig_6|83-110|0.004^Herpes_gE|90-125|0.034^V-set|92-119|0.0026^ig|164-239|4.1e-12^Ig_3|167-235|2.7e-15^Ig_2|169-239|3.3e-13^I-set|172-248|2.1e-17^Ig_5|173-243|0.0056^C2-set_2|173-202|0.00036^Ig_4|188-235|0.072^V-set|193-248|1.5e-07^V-set_CD47|215-248|0.0012^Ig_6|219-236|0.04^C2-set_2|228-248|4.4^I-set|264-357|3.1e-13^Ig_3|266-344|2.2e-12^Ig_2|266-353|4.2e-07^V-set|267-358|3.1e-06^ig|269-350|1.3e-08^Ig_5|271-346|0.023^C2-set_2|281-295|0.85^Ig_4|315-353|0.22^Herpes_gE|319-406|0.001^V-set_CD47|326-345|0.3^Ig_6|330-363|0.0011^FGFR3_TM|372-402|4e-19^Pkinase|379-420|3.6^C2-set_2|431-453|6.2^PK_Tyr_Ser-Thr|482-758|1.2e-107^Pkinase|485-756|5.8e-48^Kinase-like|509-535|2.2^Herpes_gE|514-564|2.4^Pkinase_fungal|601-690|0.00016^Kinase-like|607-700|0.00013	DHR10|354-411|1.2e-05^FUSC|366-460|0.0037^DHR10|430-465|1.8^DHR10|590-603|0.3	INFRAME	AG	1.8323	chr19:48861692:-	PLEKHA4^ENSG00000105559.12	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr10--chr19]""]"		False	chr10:121496532-chr19:48861692	1.0	0.0	Read count too low: 1 < 8	1	659_bdp	STAR-Fusion
fp_audit	659_bdp	fusion	FGFR2--TULP2	FGFR2--TULP2	FGFR2--TULP2	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	TULP2	121496532	48885560	chr10:121496532-chr19:48885560	-,-	Arriba	1	0	12		12	PASS	in-frame	FGFR2--TULP2	FGFR2--TULP2	confidence:high;duplicates(8),mismatches(1)	high	translocation	CDS/splice-site	CDS/splice-site	1851	46	8.0	1.0	0.0	0.0									9	3	True	duplicates(8),mismatches(1)		PASS		False	chr10:121496532	chr19:48885560	chr10:121496532-chr19:48885560	.	.	high	1851	46	upstream	downstream	0		duplicates(8),mismatches(1)	CCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAATACCTCCGAGCCCGGAGGCCACCCGGGATGGAGTACTCCTATGACATTAACCGTGTTCCTGAGGAGCAGATGACCTTCAAGGACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAA|CGCTTCCTCCTGGCTGGGCGAAAGAGAAGAAGGAGCAAAACTTCTAATTACCTCATCTCCCTGGATCCTACACACCTATCTCGGGACGGGGACAATTTCGTGGGC	FGFR2	TULP2	ENSG00000066468	ENSG00000104804	PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK|RFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFV	LH00166:186:2372Y3LT4:8:1127:37987:20365,LH00166:186:2372Y3LT4:8:1206:11978:12392,LH00166:186:2372Y3LT4:8:1315:22212:5568,LH00166:186:2372Y3LT4:8:1374:8232:21262,LH00166:186:2372Y3LT4:8:1484:17593:7684,LH00166:186:2372Y3LT4:8:1484:17601:7670,LH00166:186:2372Y3LT4:8:2211:4592:24064,LH00166:186:2372Y3LT4:8:2244:17131:1196,LH00166:186:2372Y3LT4:8:2250:30245:17941,LH00166:186:2372Y3LT4:8:2281:33611:8553,LH00166:186:2372Y3LT4:8:2343:28943:11817,LH00166:186:2372Y3LT4:8:2349:37615:3186,LH00166:186:2372Y3LT4:8:2362:2149:4671,LH00166:186:2372Y3LT4:8:2417:41345:12700,LH00166:186:2372Y3LT4:8:2440:7383:13065,LH00166:186:2372Y3LT4:8:1141:18013:5274,LH00166:186:2372Y3LT4:8:1235:35504:7376,LH00166:186:2372Y3LT4:8:2129:18345:14059,LH00166:186:2372Y3LT4:8:2205:20853:7530,LH00166:186:2372Y3LT4:8:2209:25707:13023,LH00166:186:2372Y3LT4:8:2381:25343:3144	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(50%)|Tub_family(85%)	CDS/splice-site	CDS/splice-site	9	3	-/-	-/-	.	12	ENST00000613048	ENST00000221399	translocation	0.004838709677419355	0.061224489795918366	0.03303159973666886																																						659_bdp	Arriba
fp_audit	659_bdp	fusion	FGFR2--TULP2	FGFR2--TULP2	FGFR2--TULP2	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	TULP2	121496532	48882203	chr10:121496532-chr19:48882203	-,-	Arriba	1	0	5		5	PASS	in-frame	FGFR2--TULP2	FGFR2--TULP2	confidence:medium;duplicates(5),mismatches(1)	medium	translocation	CDS/splice-site	CDS/splice-site	1851	257	5.0	1.0	0.0	0.0									4	1	True	duplicates(5),mismatches(1)		FAIL		False	chr10:121496532	chr19:48882203	chr10:121496532-chr19:48882203	.	.	medium	1851	257	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(5),mismatches(1)	CACACAGGATG___GGCCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAATACCTCCGAGCCCGGAGGCCACCCGGGATGGAGTACTCCTATGACATTAACCGTGTTCCTGAGGAGCAGATGACCTTCAAGGACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAA|GAACAGGAGTCGCTACTGAGTCGTTACCAACGTGGGGACAAACAAGGGTTGCTTTTGTTGCACAACAAAACCCCGTCGTGGGACAAGGAGAACGGTGTCTACACGCTCAATTTCCATGGTCGAGTCACTCGGGCTTCG	FGFR2	TULP2	ENSG00000066468	ENSG00000104804	TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK|EQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRA	LH00166:186:2372Y3LT4:8:1162:32260:7614,LH00166:186:2372Y3LT4:8:1174:30682:2527,LH00166:186:2372Y3LT4:8:1246:12067:2037,LH00166:186:2372Y3LT4:8:1297:13984:2079,LH00166:186:2372Y3LT4:8:1383:43586:4755,LH00166:186:2372Y3LT4:8:1387:9268:19720,LH00166:186:2372Y3LT4:8:1419:34509:22887,LH00166:186:2372Y3LT4:8:2281:30787:24989,LH00166:186:2372Y3LT4:8:1107:20214:5834,LH00166:186:2372Y3LT4:8:2279:36685:28814,LH00166:186:2372Y3LT4:8:2335:20214:16484	in-frame	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(50%)|Tub_family(42%)	CDS/splice-site	CDS/splice-site	4	1	-/-	-/-	.	5	ENST00000613048	ENST00000221399	translocation	0.00215633423180593	0.003875968992248062	0.003016151612026996																																						659_bdp	Arriba
fp_audit	659_bdp	fusion	FGFR2--TULP2	FGFR2--TULP2	FGFR2--TULP2	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	TULP2	121496532	48885560	chr10:121496532-chr19:48885560	-,-	STAR-Fusion	1	0	14	0.0834	14	PASS	in-frame	FGFR2--TULP2	FGFR2--TULP2	"[""INTERCHROMOSOMAL[chr10--chr19]""]"											ONLY_REF_SPLICE	YES_LDAS	1.5058	False	False	False	GT	AG	14		True																																										1	ENST00000369056.5	1-1866	ENST00000221399.8	949-1563	0.0834	PASS	atggtcagctggggtcgtttcatctgcctggtcgtggtcaccatggcaaccttgtccctggcccggccctccttcagtttagttgaggataccacattagagccagaagagccaccaaccaaataccaaatctctcaaccagaagtgtacgtggctgcgccaggggagtcgctagaggtgcgctgcctgttgaaagatgccgccgtgatcagttggactaaggatggggtgcacttggggcccaacaataggacagtgcttattggggagtacttgcagataaagggcgccacgcctagagactccggcctctatgcttgtactgccagtaggactgtagacagtgaaacttggtacttcatggtgaatgtcacagatgccatctcatccggagatgatgaggatgacaccgatggtgcggaagattttgtcagtgagaacagtaacaacaagagagcaccatactggaccaacacagaaaagatggaaaagcggctccatgctgtgcctgcggccaacactgtcaagtttcgctgcccagccggggggaacccaatgccaaccatgcggtggctgaaaaacgggaaggagtttaagcaggagcatcgcattggaggctacaaggtacgaaaccagcactggagcctcattatggaaagtgtggtcccatctgacaagggaaattatacctgtgtagtggagaatgaatacgggtccatcaatcacacgtaccacctggatgttgtggagcgatcgcctcaccggcccatcctccaagccggactgccggcaaatgcctccacagtggtcggaggagacgtagagtttgtctgcaaggtttacagtgatgcccagccccacatccagtggatcaagcacgtggaaaagaacggcagtaaatacgggcccgacgggctgccctacctcaaggttctcaagcactcggggataaatagttccaatgcagaagtgctggctctgttcaatgtgaccgaggcggatgctggggaatatatatgtaaggtctccaattatatagggcaggccaaccagtctgcctggctcactgtcctgccaaaacagcaagcgcctggaagagaaaaggagattacagcttccccagactacctggagatagccatttactgcataggggtcttcttaatcgcctgtatggtggtaacagtcatcctgtgccgaatgaagaacacgaccaagaagccagacttcagcagccagccggctgtgcacaagctgaccaaacgtatccccctgcggagacaggtaacagtttcggctgagtccagctcctccatgaactccaacaccccgctggtgaggataacaacacgcctctcttcaacggcagacacccccatgctggcaggggtctccgagtatgaacttccagaggacccaaaatgggagtttccaagagataagctgacactgggcaagcccctgggagaaggttgctttgggcaagtggtcatggcggaagcagtgggaattgacaaagacaagcccaaggaggcggtcaccgtggccgtgaagatgttgaaagatgatgccacagagaaagacctttctgatctggtgtcagagatggagatgatgaagatgattgggaaacacaagaatatcataaatcttcttggagcctgcacacaggatgggcctctctatgtcatagttgagtatgcctctaaaggcaacctccgagaatacctccgagcccggaggccacccgggatggagtactcctatgacattaaccgtgttcctgaggagcagatgaccttcaaggacttggtgtcatgcacctaccagctggccagaggcatggagtacttggcttcccaaaaaCGCTTCCTCCTGGCTGGGCGAAAGAGAAGAAGGAGCAAAACTTCTAATTACCTCATCTCCCTGGATCCTACACACCTATCTCGGGACGGGGACAATTTCGTGGGCAAAGTCAGATCCAATGTCTTCAGCACCAAGTTCACCATCTTTGACAATGGGGTGAATCCTGACCGGGAGCATTTAACCAGGAATACTGCCCGGATCAGACAGGAGCTGGGGGCTGTGTGTTATGAGCCCAACGTCTTAGGATACCTGGGGCCTCGGAAAATGACTGTGATTCTCCCAGGAACCAACAGCCAGAACCAGCGAATCAATGTCCAGCCACTAAATGAACAGGAGTCGCTACTGAGTCGTTACCAACGTGGGGACAAACAAGGGTTGCTTTTGTTGCACAACAAAACCCCGTCGTGGGACAAGGAGAACGGTGTCTACACGCTCAATTTCCATGGTCGAGTCACTCGGGCTTCGGTGAAGAACTTCCAAATCGTGGATCCCAAACACCAAGAACATCTGGTGCTCCAGTTCGGCCGAGTGGGCCCAGACACATTCACCATGGACTTCTGCTTTCCATTTAGCCCGCTCCAGGCCTTCAGCATCTGCTTGTCCAGTTTCAATTAG	chr10|-|[2]121496532-121496722[1]|[0]121498495-121498605[1]|[0]121500826-121500947[2]|[1]121503790-121503941[0]|[2]121515117-121515319[1]|[0]121518682-121518829[0]|[2]121519979-121520169[1]|[0]121538592-121538715[0]|[2]121551290-121551459[1]|[0]121564502-121564579[1]|[0]121565438-121565704[1]|[0]121593709-121593817[0]<==>chr19|-|[2]48881011-48881126[1]|[0]48882032-48882203[0]|[2]48883754-48883852[0]|[2]48883932-48884046[2]|[1]48885448-48885560[0]	MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPEEPPTKYQISQPEVYVAAPGESLEVRCLLKDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTASRTVDSETWYFMVNVTDAISSGDDEDDTDGAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIAIYCIGVFLIACMVVTVILCRMKNTTKKPDFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKRFLLAGRKRRRSKTSNYLISLDPTHLSRDGDNFVGKVRSNVFSTKFTIFDNGVNPDREHLTRNTARIRQELGAVCYEPNVLGYLGPRKMTVILPGTNSQNQRINVQPLNEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN*	FGFR2--TULP2	14	LH00166:186:2372Y3LT4:8:1127:37987:20365,LH00166:186:2372Y3LT4:8:1141:18013:5274,LH00166:186:2372Y3LT4:8:1206:11978:12392,LH00166:186:2372Y3LT4:8:1235:35504:7376,LH00166:186:2372Y3LT4:8:1315:22212:5568,LH00166:186:2372Y3LT4:8:1374:8232:21262,LH00166:186:2372Y3LT4:8:1484:17593:7684,LH00166:186:2372Y3LT4:8:2205:20853:7530,LH00166:186:2372Y3LT4:8:2211:4592:24064,LH00166:186:2372Y3LT4:8:2244:17131:1196,LH00166:186:2372Y3LT4:8:2250:30245:17941,LH00166:186:2372Y3LT4:8:2281:33611:8553,LH00166:186:2372Y3LT4:8:2349:37615:3186,LH00166:186:2372Y3LT4:8:2417:41345:12700	YES_LDAS	GT	1.9329	chr10:121496532:-	FGFR2^ENSG00000066468.23	FGFR3_TM|7-13|5.6^C2-set_2|44-79|0.23^Ig_3|45-110|6.4e-10^I-set|46-121|6.5e-08^Ig_2|46-113|1e-07^V-set|47-75|0.87^ig|49-119|3e-06^Ig_5|51-120|9.7e-05^Ig_4|57-113|0.0016^Ig_6|83-110|0.004^Herpes_gE|90-125|0.034^V-set|92-119|0.0026^ig|164-239|4.1e-12^Ig_3|167-235|2.7e-15^Ig_2|169-239|3.3e-13^I-set|172-248|2.1e-17^Ig_5|173-243|0.0056^C2-set_2|173-202|0.00036^Ig_4|188-235|0.072^V-set|193-248|1.5e-07^V-set_CD47|215-248|0.0012^Ig_6|219-236|0.04^C2-set_2|228-248|4.4^I-set|264-357|3.1e-13^Ig_3|266-344|2.2e-12^Ig_2|266-353|4.2e-07^V-set|267-358|3.1e-06^ig|269-350|1.3e-08^Ig_5|271-346|0.023^C2-set_2|281-295|0.85^Ig_4|315-353|0.22^Herpes_gE|319-406|0.001^V-set_CD47|326-345|0.3^Ig_6|330-363|0.0011^FGFR3_TM|372-402|4e-19^Pkinase|379-420|3.6^C2-set_2|431-453|6.2^PK_Tyr_Ser-Thr|482-758|1.2e-107^Pkinase|485-756|5.8e-48^Kinase-like|509-535|2.2^Herpes_gE|514-564|2.4^Pkinase_fungal|601-690|0.00016^Kinase-like|607-700|0.00013	.	INFRAME	AG	1.5058	chr19:48885560:-	TULP2^ENSG00000104804.8	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr10--chr19]""]"		False	chr10:121496532-chr19:48885560	14.0	0.0		14	659_bdp	STAR-Fusion
fp_audit	659_bdp	fusion	FGFR2--TULP2	FGFR2--TULP2	FGFR2--TULP2	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr19	FGFR2	TULP2	121496532	48882203	chr10:121496532-chr19:48882203	-,-	STAR-Fusion	1	0	5	0.0298	5	FAIL	in-frame	FGFR2--TULP2	FGFR2--TULP2	"[""INTERCHROMOSOMAL[chr10--chr19]""]"											ONLY_REF_SPLICE	YES_LDAS	1.9086	False	False	False	GT	AG	5		True	Read count too low: 5 < 8																																									0	ENST00000369056.5	1-1866	ENST00000221399.8	1276-1563	0.0298	FAIL	atggtcagctggggtcgtttcatctgcctggtcgtggtcaccatggcaaccttgtccctggcccggccctccttcagtttagttgaggataccacattagagccagaagagccaccaaccaaataccaaatctctcaaccagaagtgtacgtggctgcgccaggggagtcgctagaggtgcgctgcctgttgaaagatgccgccgtgatcagttggactaaggatggggtgcacttggggcccaacaataggacagtgcttattggggagtacttgcagataaagggcgccacgcctagagactccggcctctatgcttgtactgccagtaggactgtagacagtgaaacttggtacttcatggtgaatgtcacagatgccatctcatccggagatgatgaggatgacaccgatggtgcggaagattttgtcagtgagaacagtaacaacaagagagcaccatactggaccaacacagaaaagatggaaaagcggctccatgctgtgcctgcggccaacactgtcaagtttcgctgcccagccggggggaacccaatgccaaccatgcggtggctgaaaaacgggaaggagtttaagcaggagcatcgcattggaggctacaaggtacgaaaccagcactggagcctcattatggaaagtgtggtcccatctgacaagggaaattatacctgtgtagtggagaatgaatacgggtccatcaatcacacgtaccacctggatgttgtggagcgatcgcctcaccggcccatcctccaagccggactgccggcaaatgcctccacagtggtcggaggagacgtagagtttgtctgcaaggtttacagtgatgcccagccccacatccagtggatcaagcacgtggaaaagaacggcagtaaatacgggcccgacgggctgccctacctcaaggttctcaagcactcggggataaatagttccaatgcagaagtgctggctctgttcaatgtgaccgaggcggatgctggggaatatatatgtaaggtctccaattatatagggcaggccaaccagtctgcctggctcactgtcctgccaaaacagcaagcgcctggaagagaaaaggagattacagcttccccagactacctggagatagccatttactgcataggggtcttcttaatcgcctgtatggtggtaacagtcatcctgtgccgaatgaagaacacgaccaagaagccagacttcagcagccagccggctgtgcacaagctgaccaaacgtatccccctgcggagacaggtaacagtttcggctgagtccagctcctccatgaactccaacaccccgctggtgaggataacaacacgcctctcttcaacggcagacacccccatgctggcaggggtctccgagtatgaacttccagaggacccaaaatgggagtttccaagagataagctgacactgggcaagcccctgggagaaggttgctttgggcaagtggtcatggcggaagcagtgggaattgacaaagacaagcccaaggaggcggtcaccgtggccgtgaagatgttgaaagatgatgccacagagaaagacctttctgatctggtgtcagagatggagatgatgaagatgattgggaaacacaagaatatcataaatcttcttggagcctgcacacaggatgggcctctctatgtcatagttgagtatgcctctaaaggcaacctccgagaatacctccgagcccggaggccacccgggatggagtactcctatgacattaaccgtgttcctgaggagcagatgaccttcaaggacttggtgtcatgcacctaccagctggccagaggcatggagtacttggcttcccaaaaaGAACAGGAGTCGCTACTGAGTCGTTACCAACGTGGGGACAAACAAGGGTTGCTTTTGTTGCACAACAAAACCCCGTCGTGGGACAAGGAGAACGGTGTCTACACGCTCAATTTCCATGGTCGAGTCACTCGGGCTTCGGTGAAGAACTTCCAAATCGTGGATCCCAAACACCAAGAACATCTGGTGCTCCAGTTCGGCCGAGTGGGCCCAGACACATTCACCATGGACTTCTGCTTTCCATTTAGCCCGCTCCAGGCCTTCAGCATCTGCTTGTCCAGTTTCAATTAG	chr10|-|[2]121496532-121496722[1]|[0]121498495-121498605[1]|[0]121500826-121500947[2]|[1]121503790-121503941[0]|[2]121515117-121515319[1]|[0]121518682-121518829[0]|[2]121519979-121520169[1]|[0]121538592-121538715[0]|[2]121551290-121551459[1]|[0]121564502-121564579[1]|[0]121565438-121565704[1]|[0]121593709-121593817[0]<==>chr19|-|[2]48881011-48881126[1]|[0]48882032-48882203[0]	MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPEEPPTKYQISQPEVYVAAPGESLEVRCLLKDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTASRTVDSETWYFMVNVTDAISSGDDEDDTDGAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIAIYCIGVFLIACMVVTVILCRMKNTTKKPDFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN*	FGFR2--TULP2	5	LH00166:186:2372Y3LT4:8:1107:20214:5834,LH00166:186:2372Y3LT4:8:1162:32260:7614,LH00166:186:2372Y3LT4:8:1246:12067:2037,LH00166:186:2372Y3LT4:8:1297:13984:2079,LH00166:186:2372Y3LT4:8:1387:9268:19720	YES_LDAS	GT	1.9329	chr10:121496532:-	FGFR2^ENSG00000066468.23	FGFR3_TM|7-13|5.6^C2-set_2|44-79|0.23^Ig_3|45-110|6.4e-10^I-set|46-121|6.5e-08^Ig_2|46-113|1e-07^V-set|47-75|0.87^ig|49-119|3e-06^Ig_5|51-120|9.7e-05^Ig_4|57-113|0.0016^Ig_6|83-110|0.004^Herpes_gE|90-125|0.034^V-set|92-119|0.0026^ig|164-239|4.1e-12^Ig_3|167-235|2.7e-15^Ig_2|169-239|3.3e-13^I-set|172-248|2.1e-17^Ig_5|173-243|0.0056^C2-set_2|173-202|0.00036^Ig_4|188-235|0.072^V-set|193-248|1.5e-07^V-set_CD47|215-248|0.0012^Ig_6|219-236|0.04^C2-set_2|228-248|4.4^I-set|264-357|3.1e-13^Ig_3|266-344|2.2e-12^Ig_2|266-353|4.2e-07^V-set|267-358|3.1e-06^ig|269-350|1.3e-08^Ig_5|271-346|0.023^C2-set_2|281-295|0.85^Ig_4|315-353|0.22^Herpes_gE|319-406|0.001^V-set_CD47|326-345|0.3^Ig_6|330-363|0.0011^FGFR3_TM|372-402|4e-19^Pkinase|379-420|3.6^C2-set_2|431-453|6.2^PK_Tyr_Ser-Thr|482-758|1.2e-107^Pkinase|485-756|5.8e-48^Kinase-like|509-535|2.2^Herpes_gE|514-564|2.4^Pkinase_fungal|601-690|0.00016^Kinase-like|607-700|0.00013	.	INFRAME	AG	1.9086	chr19:48882203:-	TULP2^ENSG00000104804.8	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr10--chr19]""]"		False	chr10:121496532-chr19:48882203	5.0	0.0	Read count too low: 5 < 8	5	659_bdp	STAR-Fusion
fp_audit	659_bdp	fusion	IQGAP1--PPARG	IQGAP1--PPARG	IQGAP1--PPARG	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr15	chr3	IQGAP1	PPARG	90390873	12312380	chr15:90390873-chr3:12312380	+,+	Arriba	1	1	244		245	PASS	out-of-frame	IQGAP1--PPARG	IQGAP1--PPARG	confidence:high;duplicates(100),mismappers(1),mismatches(13)	high	translocation	CDS/splice-site	5'UTR/splice-site	4527	339	100.0	13.0	1.0	0.0									229	15	False	duplicates(100),mismappers(1),mismatches(13)		PASS		False	chr15:90390873	chr3:12312380	chr15:90390873-chr3:12312380	.	.	high	4527	339	downstream	upstream	1		duplicates(100),mismappers(1),mismatches(13)	GCGCCTCCAAGGTTTCACGGCTTCCTCAGCAGAGACTCGGGCTCGTCCGCCATGTCCGCCGCAGACGAGGTTGACGGGCTGGGCGTGGCCCGGCCGCACTATGGCT___CTGTCCTGGATAATGAAAGACTTACTGCAGAGGAGATGGATGAAAGGAGACGTCAGAACGTGGCTTATGAGTACCTTTGTCATTTGGAAGAAGCGAAGAG|ATTTGAAAGAAGCCAACACTAAACCACAAATATACAACAAGGCCATTTTCTCAAACGAGAGTCAGCCTTTAACG	IQGAP1	PPARG	ENSG00000140575	ENSG00000132170	MSAADEVDGLGVARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKr|fersqh*	LH00166:186:2372Y3LT4:8:1103:49718:27539,LH00166:186:2372Y3LT4:8:1103:49734:27539,LH00166:186:2372Y3LT4:8:1182:48472:14256,LH00166:186:2372Y3LT4:8:1256:22519:6381,LH00166:186:2372Y3LT4:8:1259:38610:5302,LH00166:186:2372Y3LT4:8:1309:29242:2724,LH00166:186:2372Y3LT4:8:1320:10926:29571,LH00166:186:2372Y3LT4:8:1363:20432:13163,LH00166:186:2372Y3LT4:8:1363:20448:13163,LH00166:186:2372Y3LT4:8:1378:8176:20883,LH00166:186:2372Y3LT4:8:1378:8192:20883,LH00166:186:2372Y3LT4:8:1450:39371:7263,LH00166:186:2372Y3LT4:8:2104:17916:1575,LH00166:186:2372Y3LT4:8:2153:5409:17352,LH00166:186:2372Y3LT4:8:2266:32187:4713,LH00166:186:2372Y3LT4:8:2287:49661:26516,LH00166:186:2372Y3LT4:8:2324:9883:25998,LH00166:186:2372Y3LT4:8:2324:9891:26012,LH00166:186:2372Y3LT4:8:2344:5199:4209,LH00166:186:2372Y3LT4:8:2346:26508:26208,LH00166:186:2372Y3LT4:8:2346:26516:26222,LH00166:186:2372Y3LT4:8:2409:43764:2709,LH00166:186:2372Y3LT4:8:2430:40868:28296,LH00166:186:2372Y3LT4:8:2448:22252:15951,LH00166:186:2372Y3LT4:8:2493:48933:25760,LH00166:186:2372Y3LT4:8:1101:23167:12882,LH00166:186:2372Y3LT4:8:1102:37494:28814,LH00166:186:2372Y3LT4:8:1105:11201:20883,LH00166:186:2372Y3LT4:8:1109:16856:18543,LH00166:186:2372Y3LT4:8:1111:21848:1434,LH00166:186:2372Y3LT4:8:1111:31362:23069,LH00166:186:2372Y3LT4:8:1112:25982:10276,LH00166:186:2372Y3LT4:8:1112:44387:26881,LH00166:186:2372Y3LT4:8:1113:15805:9576,LH00166:186:2372Y3LT4:8:1114:14041:19328,LH00166:186:2372Y3LT4:8:1114:24323:27834,LH00166:186:2372Y3LT4:8:1118:36175:24849,LH00166:186:2372Y3LT4:8:1122:34565:9393,LH00166:186:2372Y3LT4:8:1122:34574:9407,LH00166:186:2372Y3LT4:8:1123:37429:3004,LH00166:186:2372Y3LT4:8:1128:12771:23209,LH00166:186:2372Y3LT4:8:1137:9802:22215,LH00166:186:2372Y3LT4:8:1139:19380:23616,LH00166:186:2372Y3LT4:8:1143:15077:22495,LH00166:186:2372Y3LT4:8:1145:14793:14774,LH00166:186:2372Y3LT4:8:1148:14575:2317,LH00166:186:2372Y3LT4:8:1148:5005:23798,LH00166:186:2372Y3LT4:8:1148:8847:8370,LH00166:186:2372Y3LT4:8:1149:27527:11467,LH00166:186:2372Y3LT4:8:1150:5733:2527,LH00166:186:2372Y3LT4:8:1150:5741:2513,LH00166:186:2372Y3LT4:8:1151:44071:8623,LH00166:186:2372Y3LT4:8:1155:8330:14844,LH00166:186:2372Y3LT4:8:1159:27446:10262,LH00166:186:2372Y3LT4:8:1160:32988:4951,LH00166:186:2372Y3LT4:8:1160:45455:18726,LH00166:186:2372Y3LT4:8:1160:45471:18726,LH00166:186:2372Y3LT4:8:1163:10918:24653,LH00166:186:2372Y3LT4:8:1164:51571:4209,LH00166:186:2372Y3LT4:8:1166:14251:5148,LH00166:186:2372Y3LT4:8:1166:22366:23097,LH00166:186:2372Y3LT4:8:1167:28668:18459,LH00166:186:2372Y3LT4:8:1173:5417:28212,LH00166:186:2372Y3LT4:8:1175:15724:13779,LH00166:186:2372Y3LT4:8:1175:33886:27105,LH00166:186:2372Y3LT4:8:1175:49079:28674,LH00166:186:2372Y3LT4:8:1179:21945:26572,LH00166:186:2372Y3LT4:8:1184:19874:21444,LH00166:186:2372Y3LT4:8:1186:43068:23616,LH00166:186:2372Y3LT4:8:1186:43076:23630,LH00166:186:2372Y3LT4:8:1188:21160:4895,LH00166:186:2372Y3LT4:8:1193:1607:8833,LH00166:186:2372Y3LT4:8:1194:14963:6241,LH00166:186:2372Y3LT4:8:1196:22625:15671,LH00166:186:2372Y3LT4:8:1198:30739:9716,LH00166:186:2372Y3LT4:8:1202:23401:18417,LH00166:186:2372Y3LT4:8:1202:23409:18431,LH00166:186:2372Y3LT4:8:1203:13944:12910,LH00166:186:2372Y3LT4:8:1203:21816:18698,LH00166:186:2372Y3LT4:8:1203:50875:7292,LH00166:186:2372Y3LT4:8:1206:15093:27343,LH00166:186:2372Y3LT4:8:1207:9308:11719,LH00166:186:2372Y3LT4:8:1209:17568:27483,LH00166:186:2372Y3LT4:8:1211:46498:7838,LH00166:186:2372Y3LT4:8:1212:32066:14816,LH00166:186:2372Y3LT4:8:1212:44824:16063,LH00166:186:2372Y3LT4:8:1214:5328:27890,LH00166:186:2372Y3LT4:8:1216:25003:22425,LH00166:186:2372Y3LT4:8:1217:43570:4783,LH00166:186:2372Y3LT4:8:1222:15465:2233,LH00166:186:2372Y3LT4:8:1227:22350:11271,LH00166:186:2372Y3LT4:8:1229:2400:3873,LH00166:186:2372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72Y3LT4:8:2394:13823:15587,LH00166:186:2372Y3LT4:8:2410:18296:18487,LH00166:186:2372Y3LT4:8:2420:11841:2794,LH00166:186:2372Y3LT4:8:2426:26022:4825,LH00166:186:2372Y3LT4:8:2429:1186:13345,LH00166:186:2372Y3LT4:8:2429:28983:28814,LH00166:186:2372Y3LT4:8:2430:40487:18557,LH00166:186:2372Y3LT4:8:2436:23167:18768,LH00166:186:2372Y3LT4:8:2449:34129:7796,LH00166:186:2372Y3LT4:8:2451:22892:22859,LH00166:186:2372Y3LT4:8:2457:45778:17969,LH00166:186:2372Y3LT4:8:2474:15109:17198,LH00166:186:2372Y3LT4:8:2476:34258:11411,LH00166:186:2372Y3LT4:8:2481:33222:10262,LH00166:186:2372Y3LT4:8:2481:45997:23167,LH00166:186:2372Y3LT4:8:2484:30197:5302,LH00166:186:2372Y3LT4:8:2488:48869:7740,LH00166:186:2372Y3LT4:8:2490:39897:6521,LH00166:186:2372Y3LT4:8:2491:49540:22159,LH00166:186:2372Y3LT4:8:1427:15675:11537	out-of-frame	Calponin_homology_(CH)_domain(4%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),PPAR_gamma_N-terminal_region(100%),Zinc_finger__C4_type_(two_domains)(100%)	CDS/splice-site	5'UTR/splice-site	229	15	+/+	+/+	.	245	ENST00000268182	ENST00000397010	translocation	0.048249763481551564	0.04372355430183357	0.04598665889169257																																						659_bdp	Arriba
fp_audit	659_bdp	fusion	IQGAP1--PPARG	IQGAP1--PPARG	IQGAP1--PPARG	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr15	chr3	IQGAP1	PPARG	90390873	12379704	chr15:90390873-chr3:12379704	+,+	Arriba	1	1	9		10	PASS	out-of-frame	IQGAP1--PPARG	IQGAP1--PPARG	confidence:medium;duplicates(6)	medium	translocation	CDS/splice-site	CDS/splice-site	4527	1263	6.0	0.0	0.0	0.0									2	7	False	duplicates(6)		FAIL		False	chr15:90390873	chr3:12379704	chr15:90390873-chr3:12379704	.	.	medium	4527	1263	downstream	upstream	1	confidence_below_min(medium<high)	duplicates(6)	CCTCAGCAGAGACTCGGGCTCGTCCGCCATGTCCGCCGCAGACGAGGTTGACGGGCTGGGCGTGGCCCGGCCGCACTATGGCT___CTGTCCTGGATAATGAAAGACTTACTGCAGAGGAGATGGATGAAAGGAGACGTCAGAACGTGGCTTATGAGTACCTTTGTCATTTGGAAGAAGCGAAGAG|AAATGACCATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTTGGGATCAGCTCCGTGGATCTCTCCGTAATGGAAGACCACTCCCACTCCTTTGATATCAAGCCCTTCACTACTGTTGACTTCTCCAGCATTTCTACTCCACATTACGAAGACATTCCATTCACAAGAACAGATCCAGTGGTTGCAGATTACAAGTATGACC	IQGAP1	PPARG	ENSG00000140575	ENSG00000132170	MSAADEVDGLGVARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKr|ndhg*	LH00166:186:2372Y3LT4:8:1101:21775:14564,LH00166:186:2372Y3LT4:8:1101:21783:14550,LH00166:186:2372Y3LT4:8:1117:30407:11243,LH00166:186:2372Y3LT4:8:1163:42688:17380,LH00166:186:2372Y3LT4:8:1178:17398:17913,LH00166:186:2372Y3LT4:8:1318:47987:26166,LH00166:186:2372Y3LT4:8:1318:47995:26152,LH00166:186:2372Y3LT4:8:1318:48011:26152,LH00166:186:2372Y3LT4:8:2284:29655:5456,LH00166:186:2372Y3LT4:8:2367:33231:6128,LH00166:186:2372Y3LT4:8:2485:48885:29711,LH00166:186:2372Y3LT4:8:1427:23401:20043,LH00166:186:2372Y3LT4:8:2195:20570:1098,LH00166:186:2372Y3LT4:8:2260:5312:10402,LH00166:186:2372Y3LT4:8:2470:12763:26054,LH00166:186:2372Y3LT4:8:1427:15675:11537	out-of-frame	Calponin_homology_(CH)_domain(4%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),PPAR_gamma_N-terminal_region(100%),Zinc_finger__C4_type_(two_domains)(100%)	CDS/splice-site	CDS/splice-site	2	7	+/+	+/+	.	10	ENST00000268182	ENST00000287820	translocation	0.0005519372999227288	0.0059031877213695395	0.003227562510646134																																						659_bdp	Arriba
fp_audit	659_bdp	fusion	IQGAP1--PPARG	IQGAP1--PPARG	IQGAP1--PPARG	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bdp	altera_exact	1023	clinical	patient	Esophageal	Esophageal				71	unknown			False	659_bdp_T1_TRNA_1	tRNA	altera_exact	ssf		168.00		83.46						False		cgp_rna_exp0034_lib_s05	200.00		79.83	cgp_rna_exp0034	E01		False		659_bdp_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bdp_T1_TRNA_1_B2372Y3LT4_1	BND	chr15	chr3	IQGAP1	PPARG	90390873	12312380	chr15:90390873-chr3:12312380	+,+	STAR-Fusion	1	1	264	1.5794	265	PASS		IQGAP1--PPARG	IQGAP1--PPARG	"[""INTERCHROMOSOMAL[chr15--chr3]""]"											ONLY_REF_SPLICE	YES_LDAS	1.2867	False	False	False	GT	AG	264																																												1	.	.	.	.	1.5794	PASS	.	.	.	IQGAP1--PPARG	264	LH00166:186:2372Y3LT4:8:1101:23167:12882,LH00166:186:2372Y3LT4:8:1102:37494:28814,LH00166:186:2372Y3LT4:8:1103:49718:27539,LH00166:186:2372Y3LT4:8:1105:11201:20883,LH00166:186:2372Y3LT4:8:1109:16856:18543,LH00166:186:2372Y3LT4:8:1111:21848:1434,LH00166:186:2372Y3LT4:8:1111:31362:23069,LH00166:186:2372Y3LT4:8:1112:25982:10276,LH00166:186:2372Y3LT4:8:1112:44387:26881,LH00166:186:2372Y3LT4:8:1113:15805:9576,LH00166:186:2372Y3LT4:8:1114:14041:19328,LH00166:186:2372Y3LT4:8:1114:24323:27834,LH00166:186:2372Y3LT4:8:1118:36175:24849,LH00166:186:2372Y3LT4:8:1122:34565:9393,LH00166:186:2372Y3LT4:8:1123:37429:3004,LH00166:186:2372Y3LT4:8:1128:12771:23209,LH00166:186:2372Y3LT4:8:1137:9802:22215,LH00166:186:2372Y3LT4:8:1139:19380:23616,LH00166:186:2372Y3LT4:8:1143:15077:22495,LH00166:186:2372Y3LT4:8:1145:14793:14774,LH00166:186:2372Y3LT4:8:1148:14575:2317,LH00166:186:2372Y3LT4:8:1148:5005:23798,LH00166:186:2372Y3LT4:8:1148:8847:8370,LH00166:186:2372Y3LT4:8:1149:27527:11467,LH00166:186:2372Y3LT4:8:1150:5733:2527,LH00166:186:2372Y3LT4:8:1151:44071:8623,LH00166:186:2372Y3LT4:8:1155:8330:14844,LH00166:186:2372Y3LT4:8:1159:27446:10262,LH00166:186:2372Y3LT4:8:1160:32988:4951,LH00166:186:2372Y3LT4:8:1160:45455:18726,LH00166:186:2372Y3LT4:8:1163:10918:24653,LH00166:186:2372Y3LT4:8:1164:51571:4209,LH00166:186:2372Y3LT4:8:1166:14251:5148,LH00166:186:2372Y3LT4:8:1166:22366:23097,LH00166:186:2372Y3LT4:8:1173:5417:28212,LH00166:186:2372Y3LT4:8:1175:15724:13779,LH00166:186:2372Y3LT4:8:1175:33886:27105,LH00166:186:2372Y3LT4:8:1175:49079:28674,LH00166:186:2372Y3LT4:8:1179:21945:26572,LH00166:186:2372Y3LT4:8:1182:48472:14256,LH00166:186:2372Y3LT4:8:1184:19874:21444,LH00166:186:2372Y3LT4:8:1186:43068:23616,LH00166:186:2372Y3LT4:8:1188:21160:4895,LH00166:186:2372Y3LT4:8:1193:1607:8833,LH00166:186:2372Y3LT4:8:1194:14963:6241,LH00166:186:2372Y3LT4:8:1196:22625:15671,LH00166:186:2372Y3LT4:8:1198:30739:9716,LH00166:186:2372Y3LT4:8:1202:23401:18417,LH00166:186:2372Y3LT4:8:1203:21816:18698,LH00166:186:2372Y3LT4:8:1206:15093:27343,LH00166:186:2372Y3LT4:8:1207:9308:11719,LH00166:186:2372Y3LT4:8:1212:32066:14816,LH00166:186:2372Y3LT4:8:1212:44824:16063,LH00166:186:2372Y3LT4:8:1214:5328:27890,LH00166:186:2372Y3LT4:8:1216:25003:22425,LH00166:186:2372Y3LT4:8:1217:43570:4783,LH00166:186:2372Y3LT4:8:1227:22350:11271,LH00166:186:2372Y3LT4:8:1229:2400:3873,LH00166:186:2372Y3LT4:8:1231:50770:7418,LH00166:186:2372Y3LT4:8:1232:9228:3060,LH00166:186:2372Y3LT4:8:1233:43481:28618,LH00166:186:2372Y3LT4:8:1235:30529:6269,LH00166:186:2372Y3LT4:8:1236:40406:8104,LH00166:186:2372Y3LT4:8:1242:26160:6521,LH00166:186:2372Y3LT4:8:1245:49297:29053,LH00166:186:2372Y3LT4:8:1247:45689:5204,LH00166:186:2372Y3LT4:8:1249:27066:4643,LH00166:186:2372Y3LT4:8:1250:34509:1252,LH00166:186:2372Y3LT4:8:1251:31281:21500,LH00166:186:2372Y3LT4:8:1253:19235:19636,LH00166:186:2372Y3LT4:8:1253:23045:26713,LH00166:186:2372Y3LT4:8:1256:17908:15965,LH00166:186:2372Y3LT4:8:1256:22519:6381,LH00166:186:2372Y3LT4:8:1259:38610:5302,LH00166:186:2372Y3LT4:8:1259:9341:28898,LH00166:186:2372Y3LT4:8:1260:34622:13303,LH00166:186:2372Y3LT4:8:1262:16193:29081,LH00166:186:2372Y3LT4:8:1267:42979:4153,LH00166:186:2372Y3LT4:8:1270:13378:23420,LH00166:186:2372Y3LT4:8:1271:12747:15685,LH00166:186:2372Y3LT4:8:1272:35051:7151,LH00166:186:2372Y3LT4:8:1277:51603:25479,LH00166:186:2372Y3LT4:8:1290:47437:14956,LH00166:186:2372Y3LT4:8:1295:13515:10907,LH00166:186:2372Y3LT4:8:1295:28716:15180,LH00166:186:2372Y3LT4:8:1296:36200:13821,LH00166:186:2372Y3LT4:8:1297:30925:15783,LH00166:186:2372Y3LT4:8:1306:30561:22775,LH00166:186:2372Y3LT4:8:1307:25432:8959,LH00166:186:2372Y3LT4:8:1309:29242:2724,LH00166:186:2372Y3LT4:8:1314:11485:14760,LH00166:186:2372Y3LT4:8:1315:28158:16764,LH00166:186:2372Y3LT4:8:1315:39622:6717,LH00166:186:2372Y3LT4:8:1320:10926:29571,LH00166:186:2372Y3LT4:8:1320:25586:23041,LH00166:186:2372Y3LT4:8:1321:37874:7558,LH00166:186:2372Y3LT4:8:1324:48674:4573,LH00166:186:2372Y3LT4:8:1331:7626:29263,LH00166:186:2372Y3LT4:8:1334:11169:21920,LH00166:186:2372Y3LT4:8:1339:43877:4307,LH00166:186:2372Y3LT4:8:1349:33845:4475,LH00166:186:2372Y3LT4:8:1350:40471:26572,LH00166:186:2372Y3LT4:8:1356:11614:22074,LH00166:186:2372Y3LT4:8:1361:28773:1687,LH00166:186:2372Y3LT4:8:1363:20432:13163,LH00166:186:2372Y3LT4:8:1363:45883:18151,LH00166:186:2372Y3LT4:8:1363:47663:2850,LH00166:186:2372Y3LT4:8:1366:47914:2219,LH00166:186:2372Y3LT4:8:1369:35439:20043,LH00166:186:2372Y3LT4:8:1374:48666:16442,LH00166:186:2372Y3LT4:8:1378:8176:20883,LH00166:186:2372Y3LT4:8:1390:10579:8875,LH00166:186:2372Y3LT4:8:1391:19170:9912,LH00166:186:2372Y3LT4:8:1392:35860:11888,LH00166:186:2372Y3LT4:8:1404:14421:9365,LH00166:186:2372Y3LT4:8:1405:20157:2709,LH00166:186:2372Y3LT4:8:1405:50786:9211,LH00166:186:2372Y3LT4:8:1406:6857:15685,LH00166:186:2372Y3LT4:8:1410:21994:16876,LH00166:186:2372Y3LT4:8:1411:45730:16456,LH00166:186:2372Y3LT4:8:1414:51279:22032,LH00166:186:2372Y3LT4:8:1416:44977:24485,LH00166:186:2372Y3LT4:8:1417:47129:5008,LH00166:186:2372Y3LT4:8:1426:43303:23378,LH00166:186:2372Y3LT4:8:1427:23490:22411,LH00166:186:2372Y3LT4:8:1434:38602:28688,LH00166:186:2372Y3LT4:8:1435:10530:20841,LH00166:186:2372Y3LT4:8:1435:24243:16624,LH00166:186:2372Y3LT4:8:1437:13475:19104,LH00166:186:2372Y3LT4:8:1437:31265:13037,LH00166:186:2372Y3LT4:8:1437:31807:27679,LH00166:186:2372Y3LT4:8:1441:33085:10500,LH00166:186:2372Y3LT4:8:1441:43303:3620,LH00166:186:2372Y3LT4:8:1442:26322:1981,LH00166:186:2372Y3LT4:8:1442:27964:7095,LH00166:186:2372Y3LT4:8:1443:1235:7740,LH00166:186:2372Y3LT4:8:1443:27333:20827,LH00166:186:2372Y3LT4:8:1450:39371:7263,LH00166:186:2372Y3LT4:8:1450:5822:26250,LH00166:186:2372Y3LT4:8:1463:12933:12028,LH00166:186:2372Y3LT4:8:1467:18992:24653,LH00166:186:2372Y3LT4:8:1467:29008:23980,LH00166:186:2372Y3LT4:8:1469:29355:24891,LH00166:186:2372Y3LT4:8:1469:5126:21458,LH00166:186:2372Y3LT4:8:1471:18264:9491,LH00166:186:2372Y3LT4:8:1478:14664:12644,LH00166:186:2372Y3LT4:8:1479:23523:10444,LH00166:186:2372Y3LT4:8:1480:27899:21668,LH00166:186:2372Y3LT4:8:1482:22689:5358,LH00166:186:2372Y3LT4:8:1483:19664:19594,LH00166:186:2372Y3LT4:8:1483:38699:4363,LH00166:186:2372Y3LT4:8:1483:42162:15489,LH00166:186:2372Y3LT4:8:1484:10012:4979,LH00166:186:2372Y3LT4:8:1492:7456:26334,LH00166:186:2372Y3LT4:8:1493:22997:23209,LH00166:186:2372Y3LT4:8:1493:23345:5652,LH00166:186:2372Y3LT4:8:1494:28409:22159,LH00166:186:2372Y3LT4:8:1497:38400:4825,LH00166:186:2372Y3LT4:8:2102:18669:7810,LH00166:186:2372Y3LT4:8:2104:17916:1575,LH00166:186:2372Y3LT4:8:2104:18660:3760,LH00166:186:2372Y3LT4:8:2107:21605:2247,LH00166:186:2372Y3LT4:8:2107:30173:2738,LH00166:186:2372Y3LT4:8:2107:34218:8707,LH00166:186:2372Y3LT4:8:2115:43044:4321,LH00166:186:2372Y3LT4:8:2118:18531:6283,LH00166:186:2372Y3LT4:8:2118:2052:24737,LH00166:186:2372Y3LT4:8:2127:1510:9449,LH00166:186:2372Y3LT4:8:2128:38643:10795,LH00166:186:2372Y3LT4:8:2131:10999:2625,LH00166:186:2372Y3LT4:8:2131:30148:22845,LH00166:186:2372Y3LT4:8:2134:16630:11902,LH00166:186:2372Y3LT4:8:2140:48755:26909,LH00166:186:2372Y3LT4:8:2146:37664:12826,LH00166:186:2372Y3LT4:8:2147:9033:18838,LH00166:186:2372Y3LT4:8:2153:5409:17352,LH00166:186:2372Y3LT4:8:2154:4624:19048,LH00166:186:2372Y3LT4:8:2156:28991:5736,LH00166:186:2372Y3LT4:8:2160:8750:14900,LH00166:186:2372Y3LT4:8:2174:1372:1168,LH00166:186:2372Y3LT4:8:2186:3289:2275,LH00166:186:2372Y3LT4:8:2187:34355:2135,LH00166:186:2372Y3LT4:8:2188:39411:25353,LH00166:186:2372Y3LT4:8:2194:26047:24344,LH00166:186:2372Y3LT4:8:2203:20303:3802,LH00166:186:2372Y3LT4:8:2203:4843:25059,LH00166:186:2372Y3LT4:8:2207:16298:19903,LH00166:186:2372Y3LT4:8:2207:9559:28436,LH00166:186:2372Y3LT4:8:2214:39541:18824,LH00166:186:2372Y3LT4:8:2216:32810:16526,LH00166:186:2372Y3LT4:8:2217:1251:23209,LH00166:186:2372Y3LT4:8:2219:43966:29235,LH00166:186:2372Y3LT4:8:2223:46741:5988,LH00166:186:2372Y3LT4:8:2224:40374:13569,LH00166:186:2372Y3LT4:8:2225:19558:29249,LH00166:186:2372Y3LT4:8:2225:21120:1995,LH00166:186:2372Y3LT4:8:2225:34396:1701,LH00166:186:2372Y3LT4:8:2231:7496:10206,LH00166:186:2372Y3LT4:8:2235:28579:18025,LH00166:186:2372Y3LT4:8:2235:37146:27792,LH00166:186:2372Y3LT4:8:2239:35350:8286,LH00166:186:2372Y3LT4:8:2250:40123:27035,LH00166:186:2372Y3LT4:8:2251:41579:19384,LH00166:186:2372Y3LT4:8:2253:10983:18067,LH00166:186:2372Y3LT4:8:2262:51012:27539,LH00166:186:2372Y3LT4:8:2264:24890:29543,LH00166:186:2372Y3LT4:8:2264:51304:15124,LH00166:186:2372Y3LT4:8:2264:8241:9029,LH00166:186:2372Y3LT4:8:2265:28207:13009,LH00166:186:2372Y3LT4:8:2266:32187:4713,LH00166:186:2372Y3LT4:8:2266:9268:4699,LH00166:186:2372Y3LT4:8:2274:43408:8791,LH00166:186:2372Y3LT4:8:2282:51773:22775,LH00166:186:2372Y3LT4:8:2286:19227:4517,LH00166:186:2372Y3LT4:8:2287:49661:26516,LH00166:186:2372Y3LT4:8:2289:5870:28212,LH00166:186:2372Y3LT4:8:2296:27875:13695,LH00166:186:2372Y3LT4:8:2298:36531:8903,LH00166:186:2372Y3LT4:8:2304:10174:24625,LH00166:186:2372Y3LT4:8:2310:13758:13681,LH00166:186:2372Y3LT4:8:2320:34646:1462,LH00166:186:2372Y3LT4:8:2323:39581:26460,LH00166:186:2372Y3LT4:8:2324:9883:25998,LH00166:186:2372Y3LT4:8:2330:38052:25409,LH00166:186:2372Y3LT4:8:2338:9567:1799,LH00166:186:2372Y3LT4:8:2344:20570:21080,LH00166:186:2372Y3LT4:8:2344:37454:7922,LH00166:186:2372Y3LT4:8:2346:26508:26208,LH00166:186:2372Y3LT4:8:2347:25521:28198,LH00166:186:2372Y3LT4:8:2347:32850:1827,LH00166:186:2372Y3LT4:8:2349:3589:16021,LH00166:186:2372Y3LT4:8:2354:10223:20982,LH00166:186:2372Y3LT4:8:2357:26516:14984,LH00166:186:2372Y3LT4:8:2376:34404:3985,LH00166:186:2372Y3LT4:8:2376:44184:22775,LH00166:186:2372Y3LT4:8:2379:22681:22859,LH00166:186:2372Y3LT4:8:2381:26564:11033,LH00166:186:2372Y3LT4:8:2383:42316:25395,LH00166:186:2372Y3LT4:8:2384:23879:5652,LH00166:186:2372Y3LT4:8:2389:24655:22971,LH00166:186:2372Y3LT4:8:2394:13823:15587,LH00166:186:2372Y3LT4:8:2404:27907:5848,LH00166:186:2372Y3LT4:8:2407:19769:23896,LH00166:186:2372Y3LT4:8:2409:43764:2709,LH00166:186:2372Y3LT4:8:2410:18296:18487,LH00166:186:2372Y3LT4:8:2420:11841:2794,LH00166:186:2372Y3LT4:8:2426:26022:4825,LH00166:186:2372Y3LT4:8:2429:1186:13345,LH00166:186:2372Y3LT4:8:2429:28983:28814,LH00166:186:2372Y3LT4:8:2430:40487:18557,LH00166:186:2372Y3LT4:8:2430:40868:28296,LH00166:186:2372Y3LT4:8:2436:23167:18768,LH00166:186:2372Y3LT4:8:2448:22252:15951,LH00166:186:2372Y3LT4:8:2449:34129:7796,LH00166:186:2372Y3LT4:8:2451:22892:22859,LH00166:186:2372Y3LT4:8:2457:45778:17969,LH00166:186:2372Y3LT4:8:2474:15109:17198,LH00166:186:2372Y3LT4:8:2476:34258:11411,LH00166:186:2372Y3LT4:8:2481:33222:10262,LH00166:186:2372Y3LT4:8:2481:45997:23167,LH00166:186:2372Y3LT4:8:2484:30197:5302,LH00166:186:2372Y3LT4:8:2488:48869:7740,LH00166:186:2372Y3LT4:8:2490:39897:6521,LH00166:186:2372Y3LT4:8:2491:49540:22159	YES_LDAS	GT	1.2867	chr15:90390873:+	IQGAP1^ENSG00000140575.13	.	.	.	AG	1.8295	chr3:12312380:+	PPARG^ENSG00000132170.23	1	LH00166:186:2372Y3LT4:8:1427:15675:11537	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr15--chr3]""]"		False	chr15:90390873-chr3:12312380	264.0	1.0		265	659_bdp	STAR-Fusion
fp_audit	659_bld	fusion	AC061999--ERG	AC061999--ERG	AC061999--ERG	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr11	chr21	AC061999	ERG	36510537	38423561	chr11:36510537-chr21:38423561	+,-	Arriba	1	0	8		8	PASS		AC061999--ERG	AC061999--ERG	confidence:medium;duplicates(5)	medium	translocation	exon	CDS/splice-site	12	6906	5.0	0.0	0.0	0.0									5	3		duplicates(5)		FAIL		False	chr11:36510537	chr21:38423561	chr11:36510537-chr21:38423561	.	.	medium	12	6906	downstream	downstream	0	confidence_below_min(medium<high)	duplicates(5)	GGGCGGCGCCCCCAGCCCCGCAGCCTGGCTTTCTTCCTGCTCGGGTGTCCCACCTGGGAATTCGTTGCACCGCACAGCCGAACCCGAGTGTGTCAATGGGTGTGTGTTGGAATGAGGATGGCGACGAGAAGATCCCTCCCGGAATAACTTAATTTG|GAACTCTCCTGATGAATGCAGTGTGGCCAAAGGCGGGAAGATGGTGGGCAGCCCAGACACCGTTGGGATGAACTACGGCAGCTACATGGAGGAGAAGCACATGCCACCCCCAAACATGACCACG	AC061999.1	ERG	ENSG00000280331	ENSG00000157554	.	LH00166:186:2372Y3LT4:8:1140:20189:19917,LH00166:186:2372Y3LT4:8:1261:19105:8202,LH00166:186:2372Y3LT4:8:2117:13167:29333,LH00166:186:2372Y3LT4:8:2120:2667:19889,LH00166:186:2372Y3LT4:8:2155:22155:21556,LH00166:186:2372Y3LT4:8:2182:29962:24681,LH00166:186:2372Y3LT4:8:2314:45738:19833,LH00166:186:2372Y3LT4:8:2314:45754:19833,LH00166:186:2372Y3LT4:8:2393:6598:6941,LH00166:186:2372Y3LT4:8:2424:36046:12210,LH00166:186:2372Y3LT4:8:1422:45681:25311,LH00166:186:2372Y3LT4:8:2151:45908:21248,LH00166:186:2372Y3LT4:8:2242:7682:1504	.	|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)	exon	CDS/splice-site	5	3	+/+	-/-	.	8	ENST00000624454	ENST00000442448	translocation	0.29411764705882354	0.0004342162396873643	0.14727593164925545																																						659_bld	Arriba
fp_audit	659_bld	fusion	AC061999--ERG	AC061999--ERG	AC061999--ERG	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr11	chr21	AC061999	ERG	36510537	38423561	chr11:36510537-chr21:38423561	+,-	STAR-Fusion	1	0	8	0.056	8	PASS		AC061999--ERG	AC061999--ERG	"[""INTERCHROMOSOMAL[chr11--chr21]""]"											ONLY_REF_SPLICE	YES_LDAS	1.7056	False	False	False	GT	AG	8																																												1	.	.	.	.	0.056	PASS	.	.	.	AC061999.1--ERG	8	LH00166:186:2372Y3LT4:8:1140:20189:19917,LH00166:186:2372Y3LT4:8:1261:19105:8202,LH00166:186:2372Y3LT4:8:1422:45681:25311,LH00166:186:2372Y3LT4:8:2117:13167:29333,LH00166:186:2372Y3LT4:8:2120:2667:19889,LH00166:186:2372Y3LT4:8:2151:45908:21248,LH00166:186:2372Y3LT4:8:2155:22155:21556,LH00166:186:2372Y3LT4:8:2242:7682:1504	YES_LDAS	GT	1.7056	chr11:36510537:+	AC061999.1^ENSG00000280331.1	.	.	.	AG	1.9899	chr21:38423561:-	ERG^ENSG00000157554.19	0	.	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr11--chr21]""]"		False	chr11:36510537-chr21:38423561	8.0	0.0		8	659_bld	STAR-Fusion
fp_audit	659_bld	fusion	AC117434--ROS1	AC117434--ROS1	AC117434--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr3	chr6	AC117434	ROS1	176256419	117308830	chr3:176256419-chr6:117308830	+,+	Arriba	1	3	72		75	PASS		AC117434--ROS1	AC117434--ROS1	confidence:medium;duplicates(26),mismatches(4)	medium	translocation	intergenic	CDS	27	197	26.0	4.0	0.0	0.0									20	52		duplicates(26),mismatches(4)		FAIL		False	chr3:176256419	chr6:117308830	chr3:176256419-chr6:117308830	.	.	medium	27	197	downstream	upstream	3	confidence_below_min(medium<high)	duplicates(26),mismatches(4)	TACTCATTTTAAATATTGACTTTTTTTCTTATTTGCACAGCACCATTGTCTAAGCTGGATAGCTGAGAAATACTGACTATAGAAAGATTTTTATGATTGACCAAATGGTAGGTTTTTCTATCAACTCTATCTAGCATTGTGTTCAGGGCTC|CCTCCTGTTTGCACATAGTTTAACACATCAAGGTTGGAATGAGCTGGATAAGGCTGATGACCAAGAGTTAAAATCTCCCAAATCAGAATTCCAAAAGACCTAAGAATAGTAGAGGGTTTGCTTTAATTATACTTATTACAAACACCAGGTTTACAGTAGTTTCTCCAACAACATTTTTCCTGGGGCTAGCAGGG	AC117434.1(141882),LINC01208(159020)	ROS1	.	ENSG00000047936	.	LH00166:186:2372Y3LT4:8:1122:19817:22271,LH00166:186:2372Y3LT4:8:1155:14858:7796,LH00166:186:2372Y3LT4:8:1156:9923:11832,LH00166:186:2372Y3LT4:8:1272:20626:29361,LH00166:186:2372Y3LT4:8:1312:20974:14718,LH00166:186:2372Y3LT4:8:1350:50697:8693,LH00166:186:2372Y3LT4:8:1451:24801:7334,LH00166:186:2372Y3LT4:8:1472:10862:16400,LH00166:186:2372Y3LT4:8:1494:11088:23546,LH00166:186:2372Y3LT4:8:2101:18491:22719,LH00166:186:2372Y3LT4:8:2105:10077:26699,LH00166:186:2372Y3LT4:8:2154:46353:16974,LH00166:186:2372Y3LT4:8:2154:46361:16960,LH00166:186:2372Y3LT4:8:2154:46369:16974,LH00166:186:2372Y3LT4:8:2173:19931:19608,LH00166:186:2372Y3LT4:8:2191:25650:17913,LH00166:186:2372Y3LT4:8:2191:31435:19917,LH00166:186:2372Y3LT4:8:2340:49718:26026,LH00166:186:2372Y3LT4:8:2340:49734:26026,LH00166:186:2372Y3LT4:8:2346:20796:27469,LH00166:186:2372Y3LT4:8:2355:8791:25087,LH00166:186:2372Y3LT4:8:2414:25529:5680,LH00166:186:2372Y3LT4:8:2417:42340:10108,LH00166:186:2372Y3LT4:8:2421:18118:22074,LH00166:186:2372Y3LT4:8:2462:20643:5652,LH00166:186:2372Y3LT4:8:2463:13151:20113,LH00166:186:2372Y3LT4:8:2471:7561:6563,LH00166:186:2372Y3LT4:8:1107:23895:11061,LH00166:186:2372Y3LT4:8:1107:23903:11075,LH00166:186:2372Y3LT4:8:1117:9915:1560,LH00166:186:2372Y3LT4:8:1130:18232:11733,LH00166:186:2372Y3LT4:8:1138:1534:13723,LH00166:186:2372Y3LT4:8:1173:26864:23238,LH00166:186:2372Y3LT4:8:1174:47299:16147,LH00166:186:2372Y3LT4:8:1203:37898:22593,LH00166:186:2372Y3LT4:8:1226:36992:16568,LH00166:186:2372Y3LT4:8:1226:37001:16582,LH00166:186:2372Y3LT4:8:1293:10837:27091,LH00166:186:2372Y3LT4:8:1310:42121:17913,LH00166:186:2372Y3LT4:8:1342:17398:26825,LH00166:186:2372Y3LT4:8:1345:7529:19959,LH00166:186:2372Y3LT4:8:1360:18555:21346,LH00166:186:2372Y3LT4:8:1363:51700:8356,LH00166:186:2372Y3LT4:8:1370:1372:3662,LH00166:186:2372Y3LT4:8:1374:6178:9295,LH00166:186:2372Y3LT4:8:1383:25723:9604,LH00166:186:2372Y3LT4:8:1384:47145:12238,LH00166:186:2372Y3LT4:8:1415:46603:29039,LH00166:186:2372Y3LT4:8:1415:46611:29053,LH00166:186:2372Y3LT4:8:1441:29024:9968,LH00166:186:2372Y3LT4:8:1441:39096:6255,LH00166:186:2372Y3LT4:8:1449:23070:9379,LH00166:186:2372Y3LT4:8:1467:38716:27876,LH00166:186:2372Y3LT4:8:1468:44500:25311,LH00166:186:2372Y3LT4:8:1487:47469:27960,LH00166:186:2372Y3LT4:8:2101:31321:14031,LH00166:186:2372Y3LT4:8:2104:29097:26657,LH00166:186:2372Y3LT4:8:2111:26710:5540,LH00166:186:2372Y3LT4:8:2113:12350:14998,LH00166:186:2372Y3LT4:8:2114:7820:12981,LH00166:186:2372Y3LT4:8:2119:9050:4013,LH00166:186:2372Y3LT4:8:2128:10732:24611,LH00166:186:2372Y3LT4:8:2138:25788:5792,LH00166:186:2372Y3LT4:8:2156:6016:28100,LH00166:186:2372Y3LT4:8:2157:39225:21724,LH00166:186:2372Y3LT4:8:2166:6703:14858,LH00166:186:2372Y3LT4:8:2166:6720:14858,LH00166:186:2372Y3LT4:8:2166:7294:3746,LH00166:186:2372Y3LT4:8:2168:6841:13975,LH00166:186:2372Y3LT4:8:2173:6024:13177,LH00166:186:2372Y3LT4:8:2176:46142:17703,LH00166:186:2372Y3LT4:8:2181:13726:29375,LH00166:186:2372Y3LT4:8:2181:13734:29389,LH00166:186:2372Y3LT4:8:2193:9446:21654,LH00166:186:2372Y3LT4:8:2198:19647:5134,LH00166:186:2372Y3LT4:8:2213:46409:28450,LH00166:186:2372Y3LT4:8:2280:8030:1182,LH00166:186:2372Y3LT4:8:2280:8038:1168,LH00166:186:2372Y3LT4:8:2297:9899:6157,LH00166:186:2372Y3LT4:8:2304:11930:1827,LH00166:186:2372Y3LT4:8:2304:11938:1841,LH00166:186:2372Y3LT4:8:2322:17738:28002,LH00166:186:2372Y3LT4:8:2337:45964:3382,LH00166:186:2372Y3LT4:8:2342:25577:3242,LH00166:186:2372Y3LT4:8:2342:25594:3242,LH00166:186:2372Y3LT4:8:2342:25602:3256,LH00166:186:2372Y3LT4:8:2347:19494:11846,LH00166:186:2372Y3LT4:8:2351:45325:26376,LH00166:186:2372Y3LT4:8:2355:29234:5316,LH00166:186:2372Y3LT4:8:2355:8880:24877,LH00166:186:2372Y3LT4:8:2356:9033:21136,LH00166:186:2372Y3LT4:8:2360:20367:25802,LH00166:186:2372Y3LT4:8:2388:3848:4755,LH00166:186:2372Y3LT4:8:2416:34048:15839,LH00166:186:2372Y3LT4:8:2428:13726:14073,LH00166:186:2372Y3LT4:8:2446:24032:13681,LH00166:186:2372Y3LT4:8:2452:7488:28072,LH00166:186:2372Y3LT4:8:2453:30755:18011,LH00166:186:2372Y3LT4:8:2477:31613:1112,LH00166:186:2372Y3LT4:8:2497:10570:10346,LH00166:186:2372Y3LT4:8:1365:28215:12070,LH00166:186:2372Y3LT4:8:1365:28231:12070,LH00166:186:2372Y3LT4:8:2136:4721:14003,LH00166:186:2372Y3LT4:8:2190:48755:26264,LH00166:186:2372Y3LT4:8:2190:48763:26250	.	.	intergenic	CDS	20	52	./+	-/+	.	75	.	.	translocation	0.44329896907216493	0.21357285429141717	0.32843591168179104																																						659_bld	Arriba
fp_audit	659_bld	fusion	CIR1--ROS1	ROS1--CIR1	CIR1--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr2	ROS1	CIR1	117311097	174381777	chr6:117311097-chr2:174381777	+,-	Arriba	1	0	150		150	PASS		ROS1--CIR1	CIR1--ROS1	confidence:high;duplicates(77),mismatches(5)	high	translocation/3'-3'	CDS	CDS/splice-site	1015	602	77.0	5.0	0.0	0.0									104	46		duplicates(77),mismatches(5)		PASS		False	chr6:117311097	chr2:174381777	chr6:117311097-chr2:174381777	.	.	high	1015	602	downstream	downstream	0		duplicates(77),mismatches(5)	TGCCAATATCCGTAATAACCCTGTATCCAGAAGAGAATTGTACCTGTGAATGAAATGCATCCGTTCCAAGTAGACACAGCCTTTTGAAATATCTACACACAGGTCTACAAGGTCAACCAAG|ATTGCTTATGGGAGATGAACGTGTAAAGAATGGCCTTAATTTCATGTATGAAGCCCCACCAGGAGCTAAAAAAG___AAAACAAAGAG___AAAGAAGAAACAGAAGGAGAGACCGAATACAAATTTGAATGGCAG	ROS1	CIR1	ENSG00000047936	ENSG00000138433	.	LH00166:186:2372Y3LT4:8:1101:17131:8511,LH00166:186:2372Y3LT4:8:1106:19235:5316,LH00166:186:2372Y3LT4:8:1127:48949:10430,LH00166:186:2372Y3LT4:8:1128:10085:5526,LH00166:186:2372Y3LT4:8:1132:40900:26082,LH00166:186:2372Y3LT4:8:1149:6275:5876,LH00166:186:2372Y3LT4:8:1157:46191:24344,LH00166:186:2372Y3LT4:8:1159:37559:15503,LH00166:186:2372Y3LT4:8:1182:35488:10711,LH00166:186:2372Y3LT4:8:1183:45932:20925,LH00166:186:2372Y3LT4:8:1201:19995:21654,LH00166:186:2372Y3LT4:8:1201:32972:24344,LH00166:186:2372Y3LT4:8:1202:44015:1883,LH00166:186:2372Y3LT4:8:1213:42235:7123,LH00166:186:2372Y3LT4:8:1218:1073:22761,LH00166:186:2372Y3LT4:8:1237:35577:26166,LH00166:186:2372Y3LT4:8:1237:35585:26180,LH00166:186:2372Y3LT4:8:1241:36645:8062,LH00166:186:2372Y3LT4:8:1248:30876:27441,LH00166:186:2372Y3LT4:8:1303:17042:3228,LH00166:186:2372Y3LT4:8:1303:17051:3242,LH00166:186:2372Y3LT4:8:1310:16250:15615,LH00166:186:2372Y3LT4:8:1313:39824:16175,LH00166:186:2372Y3LT4:8:1320:12027:26348,LH00166:186:2372Y3LT4:8:1338:41110:17815,LH00166:186:2372Y3LT4:8:1362:18717:15573,LH00166:186:2372Y3LT4:8:1362:18725:15587,LH00166:186:2372Y3LT4:8:1366:19526:21570,LH00166:186:2372Y3LT4:8:1367:19639:3158,LH00166:186:2372Y3LT4:8:1376:25480:28828,LH00166:186:2372Y3LT4:8:1376:41207:15937,LH00166:186:2372Y3LT4:8:1447:42130:4811,LH00166:186:2372Y3LT4:8:1447:48084:3662,LH00166:186:2372Y3LT4:8:1462:11978:23490,LH00166:186:2372Y3LT4:8:1477:42817:17240,LH00166:186:2372Y3LT4:8:1482:45317:6157,LH00166:186:2372Y3LT4:8:1491:21718:7488,LH00166:186:2372Y3LT4:8:2134:16816:13513,LH00166:186:2372Y3LT4:8:2139:30917:19188,LH00166:186:2372Y3LT4:8:2178:10862:15194,LH00166:186:2372Y3LT4:8:2179:48682:16554,LH00166:186:2372Y3LT4:8:2225:21589:27581,LH00166:186:2372Y3LT4:8:2244:22010:27413,LH00166:186:2372Y3LT4:8:2254:43197:14732,LH00166:186:2372Y3LT4:8:2262:14308:6535,LH00166:186:2372Y3LT4:8:2306:44993:6241,LH00166:186:2372Y3LT4:8:2308:42817:11832,LH00166:186:2372Y3LT4:8:2318:27891:23223,LH00166:186:2372Y3LT4:8:2327:23603:14704,LH00166:186:2372Y3LT4:8:2337:44346:2485,LH00166:186:2372Y3LT4:8:2346:22964:13569,LH00166:186:2372Y3LT4:8:2360:37154:20155,LH00166:186:2372Y3LT4:8:2366:49071:14816,LH00166:186:2372Y3LT4:8:2395:35852:4811,LH00166:186:2372Y3LT4:8:2404:47429:25059,LH00166:186:2372Y3LT4:8:2406:20926:28114,LH00166:186:2372Y3LT4:8:2418:27163:20869,LH00166:186:2372Y3LT4:8:2418:27179:20869,LH00166:186:2372Y3LT4:8:2418:27195:20869,LH00166:186:2372Y3LT4:8:2418:27212:20869,LH00166:186:2372Y3LT4:8:2455:19065:14858,LH00166:186:2372Y3LT4:8:2485:8629:9393,LH00166:186:2372Y3LT4:8:1103:14300:16357,LH00166:186:2372Y3LT4:8:1103:15958:11271,LH00166:186:2372Y3LT4:8:1104:11266:26432,LH00166:186:2372Y3LT4:8:1104:11549:7081,LH00166:186:2372Y3LT4:8:1104:49265:20561,LH00166:186:2372Y3LT4:8:1120:32753:23742,LH00166:186:2372Y3LT4:8:1120:32761:23728,LH00166:186:2372Y3LT4:8:1121:18337:14045,LH00166:186:2372Y3LT4:8:1124:25731:26965,LH00166:186:2372Y3LT4:8:1128:26411:20155,LH00166:186:2372Y3LT4:8:1133:3783:21626,LH00166:186:2372Y3LT4:8:1133:3791:21640,LH00166:186:2372Y3LT4:8:1141:45107:28744,LH00166:186:2372Y3LT4:8:1146:45204:10332,LH00166:186:2372Y3LT4:8:1154:10117:20015,LH00166:186:2372Y3LT4:8:1156:12391:22635,LH00166:186:2372Y3LT4:8:1157:22746:5988,LH00166:186:2372Y3LT4:8:1164:33271:6030,LH00166:186:2372Y3LT4:8:1167:8669:9491,LH00166:186:2372Y3LT4:8:1176:20311:21024,LH00166:186:2372Y3LT4:8:1179:36167:24975,LH00166:186:2372Y3LT4:8:1183:41474:19146,LH00166:186:2372Y3LT4:8:1191:51627:20645,LH00166:186:2372Y3LT4:8:1192:21063:22243,LH00166:186:2372Y3LT4:8:1193:44815:22383,LH00166:186:2372Y3LT4:8:1196:20675:1308,LH00166:186:2372Y3LT4:8:1197:8410:10612,LH00166:186:2372Y3LT4:8:1198:26241:25045,LH00166:186:2372Y3LT4:8:1198:5927:6283,LH00166:186:2372Y3LT4:8:1201:39339:8889,LH00166:186:2372Y3LT4:8:1212:45786:5624,LH00166:186:2372Y3LT4:8:1214:44880:16554,LH00166:186:2372Y3LT4:8:1215:21654:23742,LH00166:186:2372Y3LT4:8:1220:37737:10318,LH00166:186:2372Y3LT4:8:1223:23118:8427,LH00166:186:2372Y3LT4:8:1223:48966:20911,LH00166:186:2372Y3LT4:8:1224:2222:24190,LH00166:186:2372Y3LT4:8:1228:10287:23280,LH00166:186:2372Y3LT4:8:1235:42922:4951,LH00166:186:2372Y3LT4:8:1249:27543:17801,LH00166:186:2372Y3LT4:8:1252:27301:20996,LH00166:186:2372Y3LT4:8:1252:40908:8609,LH00166:186:2372Y3LT4:8:1256:15942:3088,LH00166:186:2372Y3LT4:8:1262:42623:22985,LH00166:186:2372Y3LT4:8:1264:47542:9169,LH00166:186:2372Y3LT4:8:1266:2448:11691,LH00166:186:2372Y3LT4:8:1273:3726:14270,LH00166:186:2372Y3LT4:8:1281:28870:20071,LH00166:186:2372Y3LT4:8:1301:27260:17843,LH00166:186:2372Y3LT4:8:1301:31960:10598,LH00166:186:2372Y3LT4:8:1309:18118:15657,LH00166:186:2372Y3LT4:8:1315:1049:22635,LH00166:186:2372Y3LT4:8:1318:21678:20085,LH00166:186:2372Y3LT4:8:1320:47542:8721,LH00166:186:2372Y3LT4:8:1324:4802:2794,LH00166:186:2372Y3LT4:8:1337:30116:6787,LH00166:186:2372Y3LT4:8:1340:45705:4139,LH00166:186:2372Y3LT4:8:1342:45835:2205,LH00166:186:2372Y3LT4:8:1352:38263:6745,LH00166:186:2372Y3LT4:8:1357:40657:8034,LH00166:186:2372Y3LT4:8:1358:10352:24064,LH00166:186:2372Y3LT4:8:1363:42744:8679,LH00166:186:2372Y3LT4:8:1366:5037:10318,LH00166:186:2372Y3LT4:8:1372:29153:27679,LH00166:186:2372Y3LT4:8:1377:46814:15783,LH00166:186:2372Y3LT4:8:1378:51821:19748,LH00166:186:2372Y3LT4:8:1385:41927:18782,LH00166:186:2372Y3LT4:8:1386:13410:12518,LH00166:186:2372Y3LT4:8:1390:38958:17955,LH00166:186:2372Y3LT4:8:1391:27042:1883,LH00166:186:2372Y3LT4:8:1393:34444:14620,LH00166:186:2372Y3LT4:8:1393:36895:1350,LH00166:186:2372Y3LT4:8:1397:44370:8777,LH00166:186:2372Y3LT4:8:1406:35326:25395,LH00166:186:2372Y3LT4:8:1406:35342:25395,LH00166:186:2372Y3LT4:8:1411:2489:20589,LH00166:186:2372Y3LT4:8:1411:27301:8132,LH00166:186:2372Y3LT4:8:1413:34784:5960,LH00166:186:2372Y3LT4:8:1415:41733:24891,LH00166:186:2372Y3LT4:8:1417:35585:27301,LH00166:186:2372Y3LT4:8:1417:43489:9604,LH00166:186:2372Y3LT4:8:1419:10773:7810,LH00166:186:2372Y3LT4:8:1423:37324:19188,LH00166:186:2372Y3LT4:8:1426:43837:5694,LH00166:186:2372Y3LT4:8:1443:5498:6857,LH00166:186:2372Y3LT4:8:1452:23879:21234,LH00166:186:2372Y3LT4:8:1463:49281:16133,LH00166:186:2372Y3LT4:8:1464:49402:1911,LH00166:186:2372Y3LT4:8:1474:40398:28016,LH00166:186:2372Y3LT4:8:1486:16945:29655,LH00166:186:2372Y3LT4:8:1497:38732:6353,LH00166:186:2372Y3LT4:8:2106:50317:12322,LH00166:186:2372Y3LT4:8:2112:10045:25493,LH00166:186:2372Y3LT4:8:2122:23563:22313,LH00166:186:2372Y3LT4:8:2129:18013:3256,LH00166:186:2372Y3LT4:8:2129:5288:8903,LH00166:186:2372Y3LT4:8:2133:6000:10668,LH00166:186:2372Y3LT4:8:2139:49330:11874,LH00166:186:2372Y3LT4:8:2140:31969:20841,LH00166:186:2372Y3LT4:8:2145:15352:25437,LH00166:186:2372Y3LT4:8:2145:16953:19440,LH00166:186:2372Y3LT4:8:2155:15246:15475,LH00166:186:2372Y3LT4:8:2158:6032:19244,LH00166:186:2372Y3LT4:8:2161:39872:16343,LH00166:186:2372Y3LT4:8:2162:18887:10514,LH00166:186:2372Y3LT4:8:2162:35771:21094,LH00166:186:2372Y3LT4:8:2172:36280:17016,LH00166:186:2372Y3LT4:8:2173:14721:21234,LH00166:186:2372Y3LT4:8:2173:38101:10781,LH00166:186:2372Y3LT4:8:2175:42712:16273,LH00166:186:2372Y3LT4:8:2176:17051:11986,LH00166:186:2372Y3LT4:8:2176:36402:10444,LH00166:186:2372Y3LT4:8:2186:10886:20449,LH00166:186:2372Y3LT4:8:2189:49524:24036,LH00166:186:2372Y3LT4:8:2191:43505:1673,LH00166:186:2372Y3LT4:8:2201:26362:28590,LH00166:186:2372Y3LT4:8:2202:25149:8777,LH00166:186:2372Y3LT4:8:2213:24663:5134,LH00166:186:2372Y3LT4:8:2219:28846:19804,LH00166:186:2372Y3LT4:8:2220:29542:10444,LH00166:186:2372Y3LT4:8:2226:40552:2331,LH00166:186:2372Y3LT4:8:2226:40560:2317,LH00166:186:2372Y3LT4:8:2233:40795:8469,LH00166:186:2372Y3LT4:8:2234:23879:9379,LH00166:186:2372Y3LT4:8:2235:14737:6297,LH00166:186:2372Y3LT4:8:2242:34590:22831,LH00166:186:2372Y3LT4:8:2249:16128:11649,LH00166:186:2372Y3LT4:8:2254:29663:29263,LH00166:186:2372Y3LT4:8:2255:1760:19104,LH00166:186:2372Y3LT4:8:2255:1769:19090,LH00166:186:2372Y3LT4:8:2275:49572:9604,LH00166:186:2372Y3LT4:8:2287:8952:2499,LH00166:186:2372Y3LT4:8:2289:11994:15166,LH00166:186:2372Y3LT4:8:2292:26670:24975,LH00166:186:2372Y3LT4:8:2298:1332:14242,LH00166:186:2372Y3LT4:8:2298:7019:18684,LH00166:186:2372Y3LT4:8:2301:13127:21052,LH00166:186:2372Y3LT4:8:2314:28644:26432,LH00166:186:2372Y3LT4:8:2316:23749:2738,LH00166:186:2372Y3LT4:8:2320:6857:12995,LH00166:186:2372Y3LT4:8:2322:36604:21192,LH00166:186:2372Y3LT4:8:2355:35439:10290,LH00166:186:2372Y3LT4:8:2373:33902:23406,LH00166:186:2372Y3LT4:8:2375:18393:11817,LH00166:186:2372Y3LT4:8:2375:29606:23644,LH00166:186:2372Y3LT4:8:2385:21613:12322,LH00166:186:2372Y3LT4:8:2392:33182:3971,LH00166:186:2372Y3LT4:8:2412:4600:13009,LH00166:186:2372Y3LT4:8:2413:4325:22565,LH00166:186:2372Y3LT4:8:2416:14324:14634,LH00166:186:2372Y3LT4:8:2419:7537:26783,LH00166:186:2372Y3LT4:8:2420:38384:21220,LH00166:186:2372Y3LT4:8:2442:3103:5680,LH00166:186:2372Y3LT4:8:2448:34169:22103,LH00166:186:2372Y3LT4:8:2450:24623:15461,LH00166:186:2372Y3LT4:8:2457:17342:19412,LH00166:186:2372Y3LT4:8:2460:48302:29291,LH00166:186:2372Y3LT4:8:2462:12973:10725,LH00166:186:2372Y3LT4:8:2462:2432:13233,LH00166:186:2372Y3LT4:8:2463:11185:6927,LH00166:186:2372Y3LT4:8:2469:31475:18698,LH00166:186:2372Y3LT4:8:2472:10174:29221,LH00166:186:2372Y3LT4:8:2472:22131:25437,LH00166:186:2372Y3LT4:8:2474:47518:4391,LH00166:186:2372Y3LT4:8:2474:9438:22985,LH00166:186:2372Y3LT4:8:2479:5595:22915,LH00166:186:2372Y3LT4:8:2479:7593:7488,LH00166:186:2372Y3LT4:8:2480:39371:27862,LH00166:186:2372Y3LT4:8:2484:33279:6941,LH00166:186:2372Y3LT4:8:2488:21832:20631	.	.	CDS	CDS/splice-site	104	46	-/+	-/-	.	150	.	ENST00000342016	translocation/3'-3'	0.09294012511170688	0.07098765432098765	0.08196388971634727																																						659_bld	Arriba
fp_audit	659_bld	fusion	CIR1--ROS1	ROS1--CIR1	CIR1--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr2	chr6	CIR1	ROS1	174378923	117310967	chr2:174378923-chr6:117310967	-,+	Arriba	1	0	2		2	PASS	out-of-frame	CIR1--ROS1	CIR1--ROS1	confidence:low;duplicates(1)	low	translocation/5'-5'	CDS/splice-site	intron	632	776	1.0	0.0	0.0	0.0									0	2	False	duplicates(1)		FAIL		False	chr2:174378923	chr6:117310967	chr2:174378923-chr6:117310967	.	.	low	632	776	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(2.0<8.0)	duplicates(1)	CGAGAATGTCCTTTGTTTGGTCTTTCTGGAATCAATGCAAGTTCGGTTCCCACTGATGGCTCAG|GTGATTATTGTGCCAATATCCGTAATAACCCTGTATCCAGAAGAGAATTGTACCTGTGAATGAAATGCATCCGTTCCAAGTAGACACAGCCTTTTGAAATATCTACACACAGGTCTACAAGGTCAACCAAGcgGAG	CIR1	ROS1	ENSG00000138433	ENSG00000047936	RECPLFGLSGINASSVPTDGS|gdycanirnnpvsrrelyl*	LH00166:186:2372Y3LT4:8:1118:2545:4209,LH00166:186:2372Y3LT4:8:1471:45900:10136,LH00166:186:2372Y3LT4:8:2330:29631:5722	out-of-frame	N-terminal_domain_of_CBF1_interacting_co-repressor_CIR(100%)|	CDS/splice-site	intron	0	2	-/-	-/+	.	2	ENST00000342016	.	translocation/5'-5'	0.0	0.002570694087403599	0.0012853470437017994																																						659_bld	Arriba
fp_audit	659_bld	fusion	GLG1--ROS1	GLG1--ROS1	GLG1--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr16	chr6	GLG1	ROS1	74606657	117310967	chr16:74606657-chr6:117310967	-,+	Arriba	1	2	274		276	PASS	out-of-frame	GLG1--ROS1	GLG1--ROS1	confidence:high;duplicates(118),mismatches(3)	high	translocation/5'-5'	CDS/splice-site	intron	1979	776	118.0	3.0	0.0	0.0									108	166	False	duplicates(118),mismatches(3)		PASS		False	chr16:74606657	chr6:117310967	chr16:74606657-chr6:117310967	.	.	high	1979	776	upstream	upstream	2		duplicates(118),mismatches(3)	GCCTCCGGCCCGGCGGGGAGGAGCGGGGGCTGGTGGGGGCTGGAAGCTGGCGGAGGAAGAGTCCTGCAGGGAGGACGTGACCCGCGTGTGCCCTAAGCACACCTGGAGCAACAACCTGGCGGTGCTCGAGTGCCTGCAGGATGTGAGGGAG|GTGATTATTGTGCCAATATCCGTAATAACCCTGTATCCAGAAGAGAATTGTACCTGTGAATGAAATGCATCCGTTCCAAGTAGACACAGCCTTTTGAAATATCTACACACAGGTCTACAAGGTCAACCAAG	GLG1	ROS1	ENSG00000090863	ENSG00000047936	PPARRGGAGAGGGWKLAEEESCREDVTRVCPKHTWSNNLAVLECLQDVRE|viivpisvitlypeenctce*	LH00166:186:2372Y3LT4:8:1101:35140:14928,LH00166:186:2372Y3LT4:8:1101:40973:27189,LH00166:186:2372Y3LT4:8:1104:38950:4937,LH00166:186:2372Y3LT4:8:1104:38958:4951,LH00166:186:2372Y3LT4:8:1104:50478:27147,LH00166:186:2372Y3LT4:8:1109:52194:7698,LH00166:186:2372Y3LT4:8:1110:2812:26558,LH00166:186:2372Y3LT4:8:1115:1922:3438,LH00166:186:2372Y3LT4:8:1116:26848:23602,LH00166:186:2372Y3LT4:8:1118:21322:26895,LH00166:186:2372Y3LT4:8:1120:41838:24541,LH00166:186:2372Y3LT4:8:1123:20481:24429,LH00166:186:2372Y3LT4:8:1127:22932:6983,LH00166:186:2372Y3LT4:8:1131:23781:15797,LH00166:186:2372Y3LT4:8:1132:22414:2359,LH00166:186:2372Y3LT4:8:1132:22430:2359,LH00166:186:2372Y3LT4:8:1132:35140:15321,LH00166:186:2372Y3LT4:8:1134:4568:25788,LH00166:186:2372Y3LT4:8:1135:6412:6927,LH00166:186:2372Y3LT4:8:1138:9672:7614,LH00166:186:2372Y3LT4:8:1139:39339:23742,LH00166:186:2372Y3LT4:8:1139:39347:23728,LH00166:186:2372Y3LT4:8:1143:14009:4783,LH00166:186:2372Y3LT4:8:1145:25610:16694,LH00166:186:2372Y3LT4:8:1145:38497:27021,LH00166:186:2372Y3LT4:8:1147:40924:7824,LH00166:186:2372Y3LT4:8:1150:13062:2639,LH00166:186:2372Y3LT4:8:1152:39023:14760,LH00166:186:2372Y3LT4:8:1155:16848:27245,LH00166:186:2372Y3LT4:8:1156:43222:13429,LH00166:186:2372Y3LT4:8:1158:31880:9477,LH00166:186:2372Y3LT4:8:1161:11679:24373,LH00166:186:2372Y3LT4:8:1164:43157:8889,LH00166:186:2372Y3LT4:8:1166:24542:3270,LH00166:186:2372Y3LT4:8:1170:43295:12350,LH00166:186:2372Y3LT4:8:1173:13491:8707,LH00166:186:2372Y3LT4:8:1174:25011:25886,LH00166:186:2372Y3LT4:8:1181:12553:11846,LH00166:186:2372Y3LT4:8:1181:50033:10570,LH00166:186:2372Y3LT4:8:1191:16161:5792,LH00166:186:2372Y3LT4:8:1193:34379:10444,LH00166:186:2372Y3LT4:8:1208:31111:3130,LH00166:186:2372Y3LT4:8:1212:42210:18067,LH00166:186:2372Y3LT4:8:1214:33732:9604,LH00166:186:2372Y3LT4:8:1214:42388:13303,LH00166:186:2372Y3LT4:8:1217:17900:12280,LH00166:186:2372Y3LT4:8:1220:24186:19048,LH00166:186:2372Y3LT4:8:1220:51223:4587,LH00166:186:2372Y3LT4:8:1221:28263:11846,LH00166:186:2372Y3LT4:8:1221:34808:23770,LH00166:186:2372Y3LT4:8:1222:41660:2233,LH00166:186:2372Y3LT4:8:1227:49645:9253,LH00166:186:2372Y3LT4:8:1228:46692:17506,LH00166:186:2372Y3LT4:8:1230:10546:3522,LH00166:186:2372Y3LT4:8:1235:45082:6227,LH00166:186:2372Y3LT4:8:1236:5094:16049,LH00166:186:2372Y3LT4:8:1239:2270:2443,LH00166:186:2372Y3LT4:8:1241:18337:19678,LH00166:186:2372Y3LT4:8:1241:18345:19692,LH00166:186:2372Y3LT4:8:1243:5708:4447,LH00166:186:2372Y3LT4:8:1244:24469:7488,LH00166:186:2372Y3LT4:8:1244:25610:3046,LH00166:186:2372Y3LT4:8:1244:25618:3032,LH00166:186:2372Y3LT4:8:1246:4576:26110,LH00166:186:2372Y3LT4:8:1260:25084:25283,LH00166:186:2372Y3LT4:8:1260:25100:25283,LH00166:186:2372Y3LT4:8:1263:37332:26348,LH00166:186:2372Y3LT4:8:1272:36022:4994,LH00166:186:2372Y3LT4:8:1274:19931:5344,LH00166:186:2372Y3LT4:8:1274:19939:5330,LH00166:186:2372Y3LT4:8:1278:50147:29543,LH00166:186:2372Y3LT4:8:1281:37340:1364,LH00166:186:2372Y3LT4:8:1284:31685:28955,LH00166:186:2372Y3LT4:8:1284:31693:28969,LH00166:186:2372Y3LT4:8:1291:3694:10318,LH00166:186:2372Y3LT4:8:1292:24704:11874,LH00166:186:2372Y3LT4:8:1296:36256:6633,LH00166:186:2372Y3LT4:8:1297:5927:24330,LH00166:186:2372Y3LT4:8:1301:47024:7292,LH00166:186:2372Y3LT4:8:1301:47040:7292,LH00166:186:2372Y3LT4:8:1303:5061:11257,LH00166:186:2372Y3LT4:8:1306:24890:28618,LH00166:186:2372Y3LT4:8:1316:2003:12798,LH00166:186:2372Y3LT4:8:1317:35205:8847,LH00166:186:2372Y3LT4:8:1323:8038:17226,LH00166:186:2372Y3LT4:8:1324:24404:15166,LH00166:186:2372Y3LT4:8:1324:49249:22551,LH00166:186:2372Y3LT4:8:1333:23798:5904,LH00166:186:2372Y3LT4:8:1337:22155:15335,LH00166:186:2372Y3LT4:8:1341:46029:18179,LH00166:186:2372Y3LT4:8:1346:31621:2331,LH00166:186:2372Y3LT4:8:1348:36264:8525,LH00166:186:2372Y3LT4:8:1349:24874:26460,LH00166:186:2372Y3LT4:8:1349:2723:4937,LH00166:186:2372Y3LT4:8:1349:2731:4923,LH00166:186:2372Y3LT4:8:1351:24057:13275,LH00166:186:2372Y3LT4:8:1355:7375:15769,LH00166:186:2372Y3LT4:8:1358:45689:25409,LH00166:186:2372Y3LT4:8:1360:29817:27567,LH00166:186:2372Y3LT4:8:1360:29825:27581,LH00166:186:2372Y3LT4:8:1361:24768:29081,LH00166:186:2372Y3LT4:8:1366:43335:16007,LH00166:186:2372Y3LT4:8:1368:9017:9001,LH00166:186:2372Y3LT4:8:1369:31847:8581,LH00166:186:2372Y3LT4:8:1372:5555:27021,LH00166:186:2372Y3LT4:8:1375:12358:27259,LH00166:186:2372Y3LT4:8:1386:27956:22579,LH00166:186:2372Y3LT4:8:1389:19963:2625,LH00166:186:2372Y3LT4:8:1390:32624:12420,LH00166:186:2372Y3LT4:8:1391:23231:8230,LH00166:186:2372Y3LT4:8:1407:45115:20239,LH00166:186:2372Y3LT4:8:1408:31645:23392,LH00166:186:2372Y3LT4:8:1410:49775:23602,LH00166:186:2372Y3LT4:8:1416:37267:26152,LH00166:186:2372Y3LT4:8:1418:9406:10823,LH00166:186:2372Y3LT4:8:1418:9422:10823,LH00166:186:2372Y3LT4:8:1419:26047:7558,LH00166:186:2372Y3LT4:8:1420:25529:1729,LH00166:186:2372Y3LT4:8:1422:47469:10668,LH00166:186:2372Y3LT4:8:1423:29566:8917,LH00166:186:2372Y3LT4:8:1423:29574:8931,LH00166:186:2372Y3LT4:8:1423:32405:21962,LH00166:186:2372Y3LT4:8:1423:34031:25227,LH00166:186:2372Y3LT4:8:1435:38076:19959,LH00166:186:2372Y3LT4:8:1435:38093:19959,LH00166:186:2372Y3LT4:8:1435:8313:29557,LH00166:186:2372Y3LT4:8:1435:8321:29543,LH00166:186:2372Y3LT4:8:1437:12431:14774,LH00166:186:2372Y3LT4:8:1439:27915:28142,LH00166:186:2372Y3LT4:8:1439:31208:24597,LH00166:186:2372Y3LT4:8:1444:3912:7193,LH00166:186:2372Y3LT4:8:1448:45188:7418,LH00166:186:2372Y3LT4:8:1451:18563:10150,LH00166:186:2372Y3LT4:8:1452:34088:1981,LH00166:186:2372Y3LT4:8:1452:34096:1995,LH00166:186:2372Y3LT4:8:1455:10951:27988,LH00166:186:2372Y3LT4:8:1458:46199:28450,LH00166:186:2372Y3LT4:8:1462:6784:6339,LH00166:186:2372Y3LT4:8:1471:25521:25003,LH00166:186:2372Y3LT4:8:1473:47825:6297,LH00166:186:2372Y3LT4:8:1473:47833:6283,LH00166:186:2372Y3LT4:8:1481:43861:24344,LH00166:186:2372Y3LT4:8:1486:41863:4629,LH00166:186:2372Y3LT4:8:1491:18507:6521,LH00166:186:2372Y3LT4:8:1493:3548:2976,LH00166:186:2372Y3LT4:8:1497:51385:3438,LH00166:186:2372Y3LT4:8:2101:15327:12364,LH00166:186:2372Y3LT4:8:2102:16306:9295,LH00166:186:2372Y3LT4:8:2102:6501:8146,LH00166:186:2372Y3LT4:8:2106:50867:18235,LH00166:186:2372Y3LT4:8:2110:15934:6437,LH00166:186:2372Y3LT4:8:2119:27600:27427,LH00166:186:2372Y3LT4:8:2119:36531:23139,LH00166:186:2372Y3LT4:8:2119:36539:23125,LH00166:186:2372Y3LT4:8:2120:35237:22635,LH00166:186:2372Y3LT4:8:2124:3111:28338,LH00166:186:2372Y3LT4:8:2133:11153:6843,LH00166:186:2372Y3LT4:8:2133:45956:4433,LH00166:186:2372Y3LT4:8:2145:6453:6016,LH00166:186:2372Y3LT4:8:2147:7100:14396,LH00166:186:2372Y3LT4:8:2149:34768:16498,LH00166:186:2372Y3LT4:8:2153:26484:9688,LH00166:186:2372Y3LT4:8:2154:41717:26096,LH00166:186:2372Y3LT4:8:2162:27600:25774,LH00166:186:2372Y3LT4:8:2164:21346:26320,LH00166:186:2372Y3LT4:8:2165:14575:9127,LH00166:186:2372Y3LT4:8:2167:6024:21584,LH00166:186:2372Y3LT4:8:2168:19178:3564,LH00166:186:2372Y3LT4:8:2171:39444:10697,LH00166:186:2372Y3LT4:8:2175:43553:24513,LH00166:186:2372Y3LT4:8:2177:46037:29627,LH00166:186:2372Y3LT4:8:2182:11315:17128,LH00166:186:2372Y3LT4:8:2191:34072:28128,LH00166:186:2372Y3LT4:8:2194:33578:14270,LH00166:186:2372Y3LT4:8:2203:1680:21654,LH00166:186:2372Y3LT4:8:2206:28053:1841,LH00166:186:2372Y3LT4:8:2208:49508:4083,LH00166:186:2372Y3LT4:8:2209:18863:20533,LH00166:186:2372Y3LT4:8:2220:6962:23406,LH00166:186:2372Y3LT4:8:2221:49216:19468,LH00166:186:2372Y3LT4:8:2222:20982:15321,LH00166:186:2372Y3LT4:8:2227:16120:2079,LH00166:186:2372Y3LT4:8:2234:19453:17633,LH00166:186:2372Y3LT4:8:2246:10028:19300,LH00166:186:2372Y3LT4:8:2250:2391:26474,LH00166:186:2372Y3LT4:8:2256:24679:1238,LH00166:186:2372Y3LT4:8:2260:47331:21808,LH00166:186:2372Y3LT4:8:2266:19397:16862,LH00166:186:2372Y3LT4:8:2266:40779:21360,LH00166:186:2372Y3LT4:8:2269:25221:15236,LH00166:186:2372Y3LT4:8:2271:1639:4881,LH00166:186:2372Y3LT4:8:2271:29186:27287,LH00166:186:2372Y3LT4:8:2275:24518:20827,LH00166:186:2372Y3LT4:8:2275:40657:1112,LH00166:186:2372Y3LT4:8:2276:8386:10879,LH00166:186:2372Y3LT4:8:2281:36572:29235,LH00166:186:2372Y3LT4:8:2283:3039:16610,LH00166:186:2372Y3LT4:8:2283:3047:16624,LH00166:186:2372Y3LT4:8:2284:2820:25788,LH00166:186:2372Y3LT4:8:2297:7399:29319,LH00166:186:2372Y3LT4:8:2301:38756:6703,LH00166:186:2372Y3LT4:8:2313:27398:26236,LH00166:186:2372Y3LT4:8:2316:31386:3438,LH00166:186:2372Y3LT4:8:2317:45179:27721,LH00166:186:2372Y3LT4:8:2327:46870:9744,LH00166:186:2372Y3LT4:8:2329:15983:27763,LH00166:186:2372Y3LT4:8:2336:9511:26250,LH00166:186:2372Y3LT4:8:2338:13790:19538,LH00166:186:2372Y3LT4:8:2338:5077:12546,LH00166:186:2372Y3LT4:8:2344:24404:19174,LH00166:186:2372Y3LT4:8:2349:40940:5694,LH00166:186:2372Y3LT4:8:2350:34946:12602,LH00166:186:2372Y3LT4:8:2356:41207:13919,LH00166:186:2372Y3LT4:8:2359:13143:14690,LH00166:186:2372Y3LT4:8:2359:21888:23952,LH00166:186:2372Y3LT4:8:2361:46870:14116,LH00166:186:2372Y3LT4:8:2361:46878:14101,LH00166:186:2372Y3LT4:8:2363:4616:16315,LH00166:186:2372Y3LT4:8:2363:4624:16301,LH00166:186:2372Y3LT4:8:2364:9640:26306,LH00166:186:2372Y3LT4:8:2372:14292:22060,LH00166:186:2372Y3LT4:8:2376:5983:1701,LH00166:186:2372Y3LT4:8:2381:16557:25816,LH00166:186:2372Y3LT4:8:2382:41280:28590,LH00166:186:2372Y3LT4:8:2382:41296:28590,LH00166:186:2372Y3LT4:8:2387:25674:21374,LH00166:186:2372Y3LT4:8:2391:42097:9015,LH00166:186:2372Y3LT4:8:2395:44589:15461,LH00166:186:2372Y3LT4:8:2397:13337:19118,LH00166:186:2372Y3LT4:8:2397:17973:2065,LH00166:186:2372Y3LT4:8:2406:16314:5610,LH00166:186:2372Y3LT4:8:2406:33376:22663,LH00166:186:2372Y3LT4:8:2408:7270:20015,LH00166:186:2372Y3LT4:8:2415:16678:4699,LH00166:186:2372Y3LT4:8:2415:30351:5596,LH00166:186:2372Y3LT4:8:2418:19267:17282,LH00166:186:2372Y3LT4:8:2425:28158:12588,LH00166:186:2372Y3LT4:8:2426:4365:7866,LH00166:186:2372Y3LT4:8:2429:18021:13471,LH00166:186:2372Y3LT4:8:2440:1356:3774,LH00166:186:2372Y3LT4:8:2441:23903:19903,LH00166:186:2372Y3LT4:8:2454:3831:18543,LH00166:186:2372Y3LT4:8:2456:34250:14228,LH00166:186:2372Y3LT4:8:2462:25157:5680,LH00166:186:2372Y3LT4:8:2462:37033:15853,LH00166:186:2372Y3LT4:8:2464:25699:22004,LH00166:186:2372Y3LT4:8:2464:25707:22018,LH00166:186:2372Y3LT4:8:2470:41741:2485,LH00166:186:2372Y3LT4:8:2477:25319:15265,LH00166:186:2372Y3LT4:8:2481:12043:4937,LH00166:186:2372Y3LT4:8:2482:24105:1476,LH00166:186:2372Y3LT4:8:2494:7949:5666,LH00166:186:2372Y3LT4:8:2495:45285:4643,LH00166:186:2372Y3LT4:8:2496:4673:25325,LH00166:186:2372Y3LT4:8:1101:32235:20463,LH00166:186:2372Y3LT4:8:1103:31960:15727,LH00166:186:2372Y3LT4:8:1103:31969:15713,LH00166:186:2372Y3LT4:8:1107:51619:22901,LH00166:186:2372Y3LT4:8:1107:51627:22887,LH00166:186:2372Y3LT4:8:1114:31831:10935,LH00166:186:2372Y3LT4:8:1117:25262:24134,LH00166:186:2372Y3LT4:8:1118:26734:2920,LH00166:186:2372Y3LT4:8:1126:7666:4139,LH00166:186:2372Y3LT4:8:1129:28457:2513,LH00166:186:2372Y3LT4:8:1129:39541:21794,LH00166:186:2372Y3LT4:8:1130:37081:12854,LH00166:186:2372Y3LT4:8:1140:25998:4587,LH00166:186:2372Y3LT4:8:1146:42275:18768,LH00166:186:2372Y3LT4:8:1161:24332:6969,LH00166:186:2372Y3LT4:8:1166:4123:16666,LH00166:186:2372Y3LT4:8:1171:31135:8609,LH00166:186:2372Y3LT4:8:1179:13103:24933,LH00166:186:2372Y3LT4:8:1181:36839:20449,LH00166:186:2372Y3LT4:8:1184:26848:26404,LH00166:186:2372Y3LT4:8:1184:33724:3340,LH00166:186:2372Y3LT4:8:1189:6250:5694,LH00166:186:2372Y3LT4:8:1202:40123:2709,LH00166:186:2372Y3LT4:8:1220:16185:9113,LH00166:186:2372Y3LT4:8:1221:30812:1715,LH00166:186:2372Y3LT4:8:1221:30893:7292,LH00166:186:2372Y3LT4:8:1242:32365:7207,LH00166:186:2372Y3LT4:8:1244:37025:2219,LH00166:186:2372Y3LT4:8:1247:31006:25451,LH00166:186:2372Y3LT4:8:1248:16217:18922,LH00166:186:2372Y3LT4:8:1257:26572:10122,LH00166:186:2372Y3LT4:8:1258:41110:24092,LH00166:186:2372Y3LT4:8:1263:12860:21990,LH00166:186:2372Y3LT4:8:1268:1720:28618,LH00166:186:2372Y3LT4:8:1268:1736:28618,LH00166:186:2372Y3LT4:8:1271:6283:7544,LH00166:186:2372Y3LT4:8:1272:41102:5890,LH00166:186:2372Y3LT4:8:1273:10425:9926,LH00166:186:2372Y3LT4:8:1273:6752:22509,LH00166:186:2372Y3LT4:8:1276:41935:18011,LH00166:186:2372Y3LT4:8:1277:23191:15671,LH00166:186:2372Y3LT4:8:1280:29808:11551,LH00166:186:2372Y3LT4:8:1282:33198:29445,LH00166:186:2372Y3LT4:8:1293:14001:23490,LH00166:186:2372Y3LT4:8:1293:14826:17296,LH00166:186:2372Y3LT4:8:1297:26799:21836,LH00166:186:2372Y3LT4:8:1297:26807:21822,LH00166:186:2372Y3LT4:8:1297:9786:22018,LH00166:186:2372Y3LT4:8:1310:17795:4783,LH00166:186:2372Y3LT4:8:1332:33433:16904,LH00166:186:2372Y3LT4:8:1348:35285:14872,LH00166:186:2372Y3LT4:8:1349:9462:7109,LH00166:186:2372Y3LT4:8:1350:40876:25507,LH00166:186:2372Y3LT4:8:1351:18062:18894,LH00166:186:2372Y3LT4:8:1389:30609:20421,LH00166:186:2372Y3LT4:8:1391:23555:6072,LH00166:186:2372Y3LT4:8:1397:20465:5288,LH00166:186:2372Y3LT4:8:1402:21686:26264,LH00166:186:2372Y3LT4:8:1415:7917:19370,LH00166:186:2372Y3LT4:8:1418:45010:11229,LH00166:186:2372Y3LT4:8:1421:35868:25017,LH00166:186:2372Y3LT4:8:1424:27139:25956,LH00166:186:2372Y3LT4:8:1426:37882:2864,LH00166:186:2372Y3LT4:8:1427:17576:27777,LH00166:186:2372Y3LT4:8:1427:17593:27777,LH00166:186:2372Y3LT4:8:1434:10376:7628,LH00166:186:2372Y3LT4:8:1434:10384:7642,LH00166:186:2372Y3LT4:8:1436:13701:28436,LH00166:186:2372Y3LT4:8:1436:13717:28436,LH00166:186:2372Y3LT4:8:1443:5975:23294,LH00166:186:2372Y3LT4:8:1468:42761:10416,LH00166:186:2372Y3LT4:8:1482:22972:24765,LH00166:186:2372Y3LT4:8:1484:46369:22383,LH00166:186:2372Y3LT4:8:1493:26378:5498,LH00166:186:2372Y3LT4:8:1495:45940:26741,LH00166:186:2372Y3LT4:8:2107:9850:3018,LH00166:186:2372Y3LT4:8:2109:17552:3494,LH00166:186:2372Y3LT4:8:2111:1615:7249,LH00166:186:2372Y3LT4:8:2111:3459:9379,LH00166:186:2372Y3LT4:8:2116:17779:21010,LH00166:186:2372Y3LT4:8:2117:46053:24527,LH00166:186:2372Y3LT4:8:2118:22705:2892,LH00166:186:2372Y3LT4:8:2126:47024:2555,LH00166:186:2372Y3LT4:8:2128:30674:8567,LH00166:186:2372Y3LT4:8:2133:15327:5442,LH00166:186:2372Y3LT4:8:2149:32729:16329,LH00166:186:2372Y3LT4:8:2171:33012:24807,LH00166:186:2372Y3LT4:8:2175:3961:15573,LH00166:186:2372Y3LT4:8:2175:3969:17773,LH00166:186:2372Y3LT4:8:2179:35277:24443,LH00166:186:2372Y3LT4:8:2180:47995:18473,LH00166:186:2372Y3LT4:8:2180:48003:18459,LH00166:186:2372Y3LT4:8:2187:29679:3004,LH00166:186:2372Y3LT4:8:2194:3613:4041,LH00166:186:2372Y3LT4:8:2205:37065:22691,LH00166:186:2372Y3LT4:8:2224:9632:12308,LH00166:186:2372Y3LT4:8:2232:29372:12168,LH00166:186:2372Y3LT4:8:2240:43691:16119,LH00166:186:2372Y3LT4:8:2242:13572:21374,LH00166:186:2372Y3LT4:8:2245:30739:16077,LH00166:186:2372Y3LT4:8:2269:13256:9730,LH00166:186:2372Y3LT4:8:2271:23239:3424,LH00166:186:2372Y3LT4:8:2272:47784:16203,LH00166:186:2372Y3LT4:8:2281:17390:13219,LH00166:186:2372Y3LT4:8:2284:16727:10472,LH00166:186:2372Y3LT4:8:2284:16735:10486,LH00166:186:2372Y3LT4:8:2284:33400:14466,LH00166:186:2372Y3LT4:8:2305:43052:12462,LH00166:186:2372Y3LT4:8:2308:24704:8314,LH00166:186:2372Y3LT4:8:2315:33109:19202,LH00166:186:2372Y3LT4:8:2318:17536:12686,LH00166:186:2372Y3LT4:8:2319:15570:28198,LH00166:186:2372Y3LT4:8:2322:40973:16343,LH00166:186:2372Y3LT4:8:2325:38327:19020,LH00166:186:2372Y3LT4:8:2326:33570:14368,LH00166:186:2372Y3LT4:8:2336:36539:14354,LH00166:186:2372Y3LT4:8:2340:21152:6703,LH00166:186:2372Y3LT4:8:2342:5983:19580,LH00166:186:2372Y3LT4:8:2349:46255:1953,LH00166:186:2372Y3LT4:8:2349:46272:1953,LH00166:186:2372Y3LT4:8:2357:27592:22285,LH00166:186:2372Y3LT4:8:2361:13175:19370,LH00166:186:2372Y3LT4:8:2361:1914:19650,LH00166:186:2372Y3LT4:8:2380:3233:23616,LH00166:186:2372Y3LT4:8:2380:4155:10556,LH00166:186:2372Y3LT4:8:2393:32478:15755,LH00166:186:2372Y3LT4:8:2395:26888:12995,LH00166:186:2372Y3LT4:8:2406:32284:13233,LH00166:186:2372Y3LT4:8:2407:26297:14634,LH00166:186:2372Y3LT4:8:2413:2060:13681,LH00166:186:2372Y3LT4:8:2417:30059:2990,LH00166:186:2372Y3LT4:8:2428:31613:5652,LH00166:186:2372Y3LT4:8:2429:39662:11747,LH00166:186:2372Y3LT4:8:2461:35124:4335,LH00166:186:2372Y3LT4:8:2470:17819:14354,LH00166:186:2372Y3LT4:8:2473:34824:14970,LH00166:186:2372Y3LT4:8:2474:2691:8721,LH00166:186:2372Y3LT4:8:2475:51166:9505,LH00166:186:2372Y3LT4:8:2479:7318:18978,LH00166:186:2372Y3LT4:8:2492:51376:14186,LH00166:186:2372Y3LT4:8:1445:4058:15293,LH00166:186:2372Y3LT4:8:2187:29097:9393,LH00166:186:2372Y3LT4:8:2237:15222:19636	out-of-frame	Cysteine_rich_repeat(0%)|	CDS/splice-site	intron	108	166	-/-	-/+	.	276	ENST00000205061	.	translocation/5'-5'	0.05220306513409962	0.17709437963944857	0.1146487223867741																																						659_bld	Arriba
fp_audit	659_bld	fusion	LINC02444--NOTCH2	NOTCH2--LINC02444	LINC02444--NOTCH2	FP	FP		Arriba		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr12	NOTCH2	LINC02444	119935472	73500519	chr1:119935472-chr12:73500519	-,+	Arriba	1	3	41		44	PASS	out-of-frame	NOTCH2--LINC02444	LINC02444--NOTCH2	confidence:medium;duplicates(25)	medium	translocation	CDS/splice-site	intergenic	7542	21	25.0	0.0	0.0	0.0									29	12	False	duplicates(25)		FAIL		False	chr1:119935472	chr12:73500519	chr1:119935472-chr12:73500519	.	.	medium	7542	21	upstream	upstream	3	confidence_below_min(medium<high)	duplicates(25)	ATACTGGGAGCTACTGTGAGGAGCAACTCGATGAGTGTGCGTCCAACCCCTGCCAGCACGGGGCAACATGCAGTGACTTCATTGGTGGATACAGATGCGAG___TGTGTCCCAGGCTATCAGGGTGTCAACTGTGAGTATGAAGTGGATGAGTGCCAGAATCAGCCCTGCCAGAATGGAGGCACCTGTATTGACCTTGTGAACCATTTCAAGTGCTCTTGCCCACCAGGCACTCGGG|GCTTTGGTATCAAGATGATGCTGGCCTCATAAAATAAATTAGGACGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAAGGGTACCAGCTCCTCCTTGTACCTCTGGTAGAATTCAGCTGTGAATCCGTCTGGTCCTGGAC	NOTCH2	LINC02444(292202),AC087879.1(148147)	ENSG00000134250	.	TGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTR|gfgikmmlas*	LH00166:186:2372Y3LT4:8:1115:17309:7922,LH00166:186:2372Y3LT4:8:1132:20036:17436,LH00166:186:2372Y3LT4:8:1134:38619:3774,LH00166:186:2372Y3LT4:8:1149:15384:3158,LH00166:186:2372Y3LT4:8:1150:27090:22845,LH00166:186:2372Y3LT4:8:1150:27098:22831,LH00166:186:2372Y3LT4:8:1150:27106:22845,LH00166:186:2372Y3LT4:8:1172:37243:26923,LH00166:186:2372Y3LT4:8:1179:20125:16414,LH00166:186:2372Y3LT4:8:1193:52113:10584,LH00166:186:2372Y3LT4:8:1232:31087:25564,LH00166:186:2372Y3LT4:8:1250:28749:27007,LH00166:186:2372Y3LT4:8:1255:44759:14494,LH00166:186:2372Y3LT4:8:1263:20278:24387,LH00166:186:2372Y3LT4:8:1267:32535:6941,LH00166:186:2372Y3LT4:8:1270:40390:18698,LH00166:186:2372Y3LT4:8:1277:17067:5008,LH00166:186:2372Y3LT4:8:1285:45131:20715,LH00166:186:2372Y3LT4:8:1285:4964:16554,LH00166:186:2372Y3LT4:8:1292:31046:21850,LH00166:186:2372Y3LT4:8:1325:32778:25353,LH00166:186:2372Y3LT4:8:1370:23086:3746,LH00166:186:2372Y3LT4:8:1406:42817:25900,LH00166:186:2372Y3LT4:8:1406:7213:29249,LH00166:186:2372Y3LT4:8:1415:45107:19973,LH00166:186:2372Y3LT4:8:1421:3637:6549,LH00166:186:2372Y3LT4:8:1428:3476:29529,LH00166:186:2372Y3LT4:8:1434:44654:10500,LH00166:186:2372Y3LT4:8:1443:18345:27651,LH00166:186:2372Y3LT4:8:1443:18353:27665,LH00166:186:2372Y3LT4:8:1447:7521:15545,LH00166:186:2372Y3LT4:8:1451:11145:19608,LH00166:186:2372Y3LT4:8:1451:11153:19622,LH00166:186:2372Y3LT4:8:1491:24501:15166,LH00166:186:2372Y3LT4:8:1491:24510:15180,LH00166:186:2372Y3LT4:8:1494:38368:29431,LH00166:186:2372Y3LT4:8:2165:6234:26208,LH00166:186:2372Y3LT4:8:2207:40285:10164,LH00166:186:2372Y3LT4:8:2253:27786:18445,LH00166:186:2372Y3LT4:8:2267:32980:15222,LH00166:186:2372Y3LT4:8:2293:14543:25465,LH00166:186:2372Y3LT4:8:2331:27365:18529,LH00166:186:2372Y3LT4:8:2440:42906:21570,LH00166:186:2372Y3LT4:8:2455:45633:5498,LH00166:186:2372Y3LT4:8:2471:33651:1757,LH00166:186:2372Y3LT4:8:2485:23514:11916,LH00166:186:2372Y3LT4:8:1107:32357:19020,LH00166:186:2372Y3LT4:8:1107:32373:19020,LH00166:186:2372Y3LT4:8:1107:32389:19020,LH00166:186:2372Y3LT4:8:1166:27843:26839,LH00166:186:2372Y3LT4:8:1172:19219:29501,LH00166:186:2372Y3LT4:8:1283:26629:11313,LH00166:186:2372Y3LT4:8:1298:47056:6759,LH00166:186:2372Y3LT4:8:1352:36887:19748,LH00166:186:2372Y3LT4:8:1352:36895:19734,LH00166:186:2372Y3LT4:8:1352:36903:19748,LH00166:186:2372Y3LT4:8:1366:14793:6086,LH00166:186:2372Y3LT4:8:1394:22228:7137,LH00166:186:2372Y3LT4:8:2134:17819:25648,LH00166:186:2372Y3LT4:8:2146:44670:10024,LH00166:186:2372Y3LT4:8:2152:2246:19692,LH00166:186:2372Y3LT4:8:2190:45115:2219,LH00166:186:2372Y3LT4:8:2256:27276:23980,LH00166:186:2372Y3LT4:8:2387:49945:15433,LH00166:186:2372Y3LT4:8:2246:35771:2317,LH00166:186:2372Y3LT4:8:2339:13175:17773,LH00166:186:2372Y3LT4:8:2353:12294:15489,LH00166:186:2372Y3LT4:8:2353:12302:15503,LH00166:186:2372Y3LT4:8:2434:21775:18235	out-of-frame	Calcium-binding_EGF_domain(100%),EGF-like_domain(90%),Human_growth_factor-like_EGF(100%)|	CDS/splice-site	intergenic	29	12	-/-	./+	.	44	ENST00000256646	.	translocation	0.004027731924727633	0.391304347826087	0.1976660398754073																																						659_bld	Arriba
fp_audit	659_bld	fusion	LY6H--NOTCH2	NOTCH2--LY6H	LY6H--NOTCH2	FP	FP		Arriba		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr8	NOTCH2	LY6H	119935472	143176515	chr1:119935472-chr8:143176515	-,+	Arriba	1	0	3		3	PASS	out-of-frame	NOTCH2--LY6H	LY6H--NOTCH2	confidence:medium;duplicates(2)	medium	translocation	CDS/splice-site	intergenic	7542	3	2.0	0.0	0.0	0.0									1	2	False	duplicates(2)		FAIL		False	chr1:119935472	chr8:143176515	chr1:119935472-chr8:143176515	.	.	medium	7542	3	upstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(2)	ATGcgAGTGTGTCCCAGGCTATCAGGGTGTCAACTGTGAGTATGAAGTGGATGAGTGCCAGAATCAGCCCTGCCAGAATGGAGGCACCTGTATTGACCTTGTGAACCATTTCAAGTGCTCTTGCCCACCAGGCACTCGGG|GTACCGCATGTCTTCTACAGGTTCACGGGTGCAGTGGCTGGTGGGAGCCTCAGGTTCCAGGTCCAGAGCTCCAGGTGTCGCAGGCTTGACCTTGGAAAGATGGATCCAGCTACTTAATCCTAGTACTTTGACCTCCGAAGGCATGGCTAACACCACT	NOTCH2	LY6H(15804),GPIHBP1(36703)	ENSG00000134250	.	ceCVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTR|gtacllqvhgcsgwwepqvpgpelqvsqa*	LH00166:186:2372Y3LT4:8:1172:32365:13765,LH00166:186:2372Y3LT4:8:1172:32373:13779,LH00166:186:2372Y3LT4:8:1173:10449:12462,LH00166:186:2372Y3LT4:8:1283:36628:14508,LH00166:186:2372Y3LT4:8:2176:4325:27721	out-of-frame	Calcium-binding_EGF_domain(100%),EGF-like_domain(90%),Human_growth_factor-like_EGF(100%)|	CDS/splice-site	intergenic	1	2	-/-	./+	.	3	ENST00000256646	.	translocation	0.00013257324671881213	0.4	0.20006628662335943																																						659_bld	Arriba
fp_audit	659_bld	fusion	NOTCH2--RFTN2	RFTN2--NOTCH2	NOTCH2--RFTN2	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr2	chr1	RFTN2	NOTCH2	197675320	119949126	chr2:197675320-chr1:119949126	-,-	Arriba	1	1	140		141	PASS	in-frame	RFTN2--NOTCH2	NOTCH2--RFTN2	confidence:high;duplicates(79)	high	translocation	CDS/splice-site	CDS/splice-site	185	6349	79.0	0.0	0.0	0.0									40	100	True	duplicates(79)		PASS		False	chr2:197675320	chr1:119949126	chr2:197675320-chr1:119949126	.	.	high	185	6349	upstream	downstream	1		duplicates(79)	GACCCTGATGATAGCAGCCCTGGAAAAATATTTTCTACCCTGAAGAGACCGCAAGTGGAAACAAAGACAGAATTTGCTTACGAATATGTATTGCTGGATTTTACTCTACAAG|GCAAGAATTGTCAGACAGTATTGGCTCCCTGTTCCCCAAACCCTTGTGAGAATGCTGCTGTTTGCAAAGAGTCACCAAATTTTGAGAGTTATACTTGCTTGTGTGCTCCTGGCTGGCAAG___GTCAGCGGTGTACCATTGACATTGACGAGTGTATCTCCAAGCCCTGCATGAACCATGGTCTCTGCCA	RFTN2	NOTCH2	ENSG00000162944	ENSG00000134250	DPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFTLQ|gKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLC	LH00166:186:2372Y3LT4:8:1102:34452:9954,LH00166:186:2372Y3LT4:8:1117:36450:5484,LH00166:186:2372Y3LT4:8:1117:36458:5470,LH00166:186:2372Y3LT4:8:1130:9260:23826,LH00166:186:2372Y3LT4:8:1133:10902:24905,LH00166:186:2372Y3LT4:8:1133:10918:24905,LH00166:186:2372Y3LT4:8:1149:21443:28983,LH00166:186:2372Y3LT4:8:1149:21452:28997,LH00166:186:2372Y3LT4:8:1159:50535:12644,LH00166:186:2372Y3LT4:8:1169:47509:16848,LH00166:186:2372Y3LT4:8:1178:6356:8342,LH00166:186:2372Y3LT4:8:1188:27689:17997,LH00166:186:2372Y3LT4:8:1191:38837:19118,LH00166:186:2372Y3LT4:8:1192:46247:7320,LH00166:186:2372Y3LT4:8:1192:46255:7306,LH00166:186:2372Y3LT4:8:1192:5765:1518,LH00166:186:2372Y3LT4:8:1195:39379:6941,LH00166:186:2372Y3LT4:8:1196:47437:9604,LH00166:186:2372Y3LT4:8:1198:50705:2653,LH00166:186:2372Y3LT4:8:1204:33125:7039,LH00166:186:2372Y3LT4:8:1205:29865:5120,LH00166:186:2372Y3LT4:8:1206:9745:7852,LH00166:186:2372Y3LT4:8:1228:10951:25493,LH00166:186:2372Y3LT4:8:1230:25027:28772,LH00166:186:2372Y3LT4:8:1237:15991:11803,LH00166:186:2372Y3LT4:8:1239:46231:1687,LH00166:186:2372Y3LT4:8:1246:32171:13373,LH00166:186:2372Y3LT4:8:1246:32179:13359,LH00166:186:2372Y3LT4:8:1262:20780:9113,LH00166:186:2372Y3LT4:8:1262:38869:8553,LH00166:186:2372Y3LT4:8:1262:4527:25297,LH00166:186:2372Y3LT4:8:1263:32632:14648,LH00166:186:2372Y3LT4:8:1264:18038:4027,LH00166:186:2372Y3LT4:8:1271:17326:2766,LH00166:186:2372Y3LT4:8:1282:27462:3312,LH00166:186:2372Y3LT4:8:1293:19429:27119,LH00166:186:2372Y3LT4:8:1295:32252:21220,LH00166:186:2372Y3LT4:8:1314:44225:26741,LH00166:186:2372Y3LT4:8:1314:44241:26741,LH00166:186:2372Y3LT4:8:1321:39080:14242,LH00166:186:2372Y3LT4:8:1328:21937:25830,LH00166:186:2372Y3LT4:8:1328:34954:11523,LH00166:186:2372Y3LT4:8:1330:12496:26404,LH00166:186:2372Y3LT4:8:1331:46409:22397,LH00166:186:2372Y3LT4:8:1340:11363:21696,LH00166:186:2372Y3LT4:8:1345:29655:3746,LH00166:186:2372Y3LT4:8:1345:29663:3760,LH00166:186:2372Y3LT4:8:1348:46150:27133,LH00166:186:2372Y3LT4:8:1355:22188:4097,LH00166:186:2372Y3LT4:8:1356:6137:8384,LH00166:186:2372Y3LT4:8:1357:12666:6465,LH00166:186:2372Y3LT4:8:1357:16735:11495,LH00166:186:2372Y3LT4:8:1362:3306:5890,LH00166:186:2372Y3LT4:8:1372:24008:9604,LH00166:186:2372Y3LT4:8:1372:46280:12336,LH00166:186:2372Y3LT4:8:1376:26217:2611,LH00166:186:2372Y3LT4:8:1379:32446:24723,LH00166:186:2372Y3LT4:8:1381:3014:23069,LH00166:186:2372Y3LT4:8:1391:2027:7095,LH00166:186:2372Y3LT4:8:1391:40423:16512,LH00166:186:2372Y3LT4:8:1397:45268:6605,LH00166:186:2372Y3LT4:8:1403:29493:27904,LH00166:186:2372Y3LT4:8:1409:31087:3396,LH00166:186:2372Y3LT4:8:1415:30213:6843,LH00166:186:2372Y3LT4:8:1417:20028:14928,LH00166:186:2372Y3LT4:8:1417:20044:14928,LH00166:186:2372Y3LT4:8:1436:47954:20029,LH00166:186:2372Y3LT4:8:1436:47962:20043,LH00166:186:2372Y3LT4:8:1437:20109:16498,LH00166:186:2372Y3LT4:8:1438:21435:23560,LH00166:186:2372Y3LT4:8:1449:3014:11383,LH00166:186:2372Y3LT4:8:1453:13661:9421,LH00166:186:2372Y3LT4:8:1459:2214:14172,LH00166:186:2372Y3LT4:8:1459:2222:14158,LH00166:186:2372Y3LT4:8:1461:10659:1392,LH00166:186:2372Y3LT4:8:1461:17220:24078,LH00166:186:2372Y3LT4:8:1462:51368:26166,LH00166:186:2372Y3LT4:8:1471:27115:11369,LH00166:186:2372Y3LT4:8:1471:27123:11383,LH00166:186:2372Y3LT4:8:1474:17002:29417,LH00166:186:2372Y3LT4:8:1475:25755:14340,LH00166:186:2372Y3LT4:8:1480:13936:15867,LH00166:186:2372Y3LT4:8:1482:16816:13709,LH00166:186:2372Y3LT4:8:1482:46498:27792,LH00166:186:2372Y3LT4:8:1482:46506:27777,LH00166:186:2372Y3LT4:8:1488:38594:15895,LH00166:186:2372Y3LT4:8:1488:43942:25718,LH00166:186:2372Y3LT4:8:1488:45608:14508,LH00166:186:2372Y3LT4:8:2101:20829:15923,LH00166:186:2372Y3LT4:8:2106:42324:24120,LH00166:186:2372Y3LT4:8:2111:10352:2738,LH00166:186:2372Y3LT4:8:2113:26030:22355,LH00166:186:2372Y3LT4:8:2120:45560:21010,LH00166:186:2372Y3LT4:8:2130:38400:5218,LH00166:186:2372Y3LT4:8:2132:35099:2135,LH00166:186:2372Y3LT4:8:2155:11080:3746,LH00166:186:2372Y3LT4:8:2155:7529:17885,LH00166:186:2372Y3LT4:8:2156:32341:17310,LH00166:186:2372Y3LT4:8:2165:45552:28702,LH00166:186:2372Y3LT4:8:2166:28360:15349,LH00166:186:2372Y3LT4:8:2167:6720:18557,LH00166:186:2372Y3LT4:8:2187:43149:7698,LH00166:186:2372Y3LT4:8:2193:24720:14228,LH00166:186:2372Y3LT4:8:2205:29299:26699,LH00166:186:2372Y3LT4:8:2219:47501:23532,LH00166:186:2372Y3LT4:8:2230:31912:21164,LH00166:186:2372Y3LT4:8:2241:19583:3564,LH00166:186:2372Y3LT4:8:2248:15683:2780,LH00166:186:2372Y3LT4:8:2248:3006:10809,LH00166:186:2372Y3LT4:8:2255:15392:12084,LH00166:186:2372Y3LT4:8:2259:50228:9141,LH00166:186:2372Y3LT4:8:2270:22163:27455,LH00166:186:2372Y3LT4:8:2279:17487:23476,LH00166:186:2372Y3LT4:8:2289:37340:20225,LH00166:186:2372Y3LT4:8:2291:38675:7348,LH00166:186:2372Y3LT4:8:2292:31338:25241,LH00166:186:2372Y3LT4:8:2295:32122:18193,LH00166:186:2372Y3LT4:8:2307:5166:10514,LH00166:186:2372Y3LT4:8:2311:25642:8903,LH00166:186:2372Y3LT4:8:2311:25658:8903,LH00166:186:2372Y3LT4:8:2318:31119:20687,LH00166:186:2372Y3LT4:8:2318:31135:20687,LH00166:186:2372Y3LT4:8:2320:18402:8216,LH00166:186:2372Y3LT4:8:2323:25189:25634,LH00166:186:2372Y3LT4:8:2323:38578:26628,LH00166:186:2372Y3LT4:8:2326:2780:18740,LH00166:186:2372Y3LT4:8:2348:42453:8230,LH00166:186:2372Y3LT4:8:2349:50309:12168,LH00166:186:2372Y3LT4:8:2349:50325:12168,LH00166:186:2372Y3LT4:8:2357:38125:11888,LH00166:186:2372Y3LT4:8:2357:42332:2247,LH00166:186:2372Y3LT4:8:2357:42340:2233,LH00166:186:2372Y3LT4:8:2359:12480:16091,LH00166:186:2372Y3LT4:8:2371:39646:11439,LH00166:186:2372Y3LT4:8:2377:36005:25620,LH00166:186:2372Y3LT4:8:2386:15449:15012,LH00166:186:2372Y3LT4:8:2388:8313:11173,LH00166:186:2372Y3LT4:8:2390:47380:19230,LH00166:186:2372Y3LT4:8:2402:31329:9758,LH00166:186:2372Y3LT4:8:2416:7690:2247,LH00166:186:2372Y3LT4:8:2424:34031:14438,LH00166:186:2372Y3LT4:8:2424:8208:26040,LH00166:186:2372Y3LT4:8:2428:5352:12854,LH00166:186:2372Y3LT4:8:2431:12010:19482,LH00166:186:2372Y3LT4:8:2432:18879:16357,LH00166:186:2372Y3LT4:8:2439:28474:1280,LH00166:186:2372Y3LT4:8:2442:1663:24120,LH00166:186:2372Y3LT4:8:2442:37931:16736,LH00166:186:2372Y3LT4:8:2443:9284:12126,LH00166:186:2372Y3LT4:8:2445:2254:26236,LH00166:186:2372Y3LT4:8:2454:10473:3396,LH00166:186:2372Y3LT4:8:2457:43594:7572,LH00166:186:2372Y3LT4:8:2465:20990:14326,LH00166:186:2372Y3LT4:8:2474:10328:1406,LH00166:186:2372Y3LT4:8:2474:34290:6143,LH00166:186:2372Y3LT4:8:2492:48278:12406,LH00166:186:2372Y3LT4:8:2493:34582:28926,LH00166:186:2372Y3LT4:8:2493:34598:28926,LH00166:186:2372Y3LT4:8:2494:48286:14550,LH00166:186:2372Y3LT4:8:2494:48286:14578,LH00166:186:2372Y3LT4:8:2494:48294:14564,LH00166:186:2372Y3LT4:8:2496:31880:15082,LH00166:186:2372Y3LT4:8:1105:10991:8300,LH00166:186:2372Y3LT4:8:1107:30731:8917,LH00166:186:2372Y3LT4:8:1108:7771:16820,LH00166:186:2372Y3LT4:8:1108:7779:16834,LH00166:186:2372Y3LT4:8:1136:3702:24597,LH00166:186:2372Y3LT4:8:1136:3710:24218,LH00166:186:2372Y3LT4:8:1150:19866:20561,LH00166:186:2372Y3LT4:8:1150:19874:20575,LH00166:186:2372Y3LT4:8:1153:38384:28226,LH00166:186:2372Y3LT4:8:1168:33951:15194,LH00166:186:2372Y3LT4:8:1179:44160:29095,LH00166:186:2372Y3LT4:8:1179:44168:29109,LH00166:186:2372Y3LT4:8:1228:18863:3578,LH00166:186:2372Y3LT4:8:1240:35941:28366,LH00166:186:2372Y3LT4:8:1245:38279:12322,LH00166:186:2372Y3LT4:8:1275:20319:26138,LH00166:186:2372Y3LT4:8:1275:6881:11495,LH00166:186:2372Y3LT4:8:1292:1995:28983,LH00166:186:2372Y3LT4:8:1329:22091:26544,LH00166:186:2372Y3LT4:8:1379:17366:11467,LH00166:186:2372Y3LT4:8:1391:29736:11061,LH00166:186:2372Y3LT4:8:1412:41588:3424,LH00166:186:2372Y3LT4:8:1414:15246:19622,LH00166:186:2372Y3LT4:8:1416:40673:8398,LH00166:186:2372Y3LT4:8:1429:15869:27735,LH00166:186:2372Y3LT4:8:1430:13798:22859,LH00166:186:2372Y3LT4:8:1435:32964:18557,LH00166:186:2372Y3LT4:8:1439:18410:28492,LH00166:186:2372Y3LT4:8:1444:49928:22691,LH00166:186:2372Y3LT4:8:1450:21217:3873,LH00166:186:2372Y3LT4:8:1450:21225:3859,LH00166:186:2372Y3LT4:8:1452:20246:4657,LH00166:186:2372Y3LT4:8:2134:14292:28114,LH00166:186:2372Y3LT4:8:2155:13976:9043,LH00166:186:2372Y3LT4:8:2163:13960:10556,LH00166:186:2372Y3LT4:8:2167:7383:28058,LH00166:186:2372Y3LT4:8:2174:43222:1743,LH00166:186:2372Y3LT4:8:2183:50818:27147,LH00166:186:2372Y3LT4:8:2194:48958:16217,LH00166:186:2372Y3LT4:8:2205:21541:19510,LH00166:186:2372Y3LT4:8:2232:33813:19244,LH00166:186:2372Y3LT4:8:2238:11800:3873,LH00166:186:2372Y3LT4:8:2275:23239:22789,LH00166:186:2372Y3LT4:8:2275:23248:22803,LH00166:186:2372Y3LT4:8:2275:5983:12798,LH00166:186:2372Y3LT4:8:2321:3662:20743,LH00166:186:2372Y3LT4:8:2322:14996:27203,LH00166:186:2372Y3LT4:8:2323:1858:18571,LH00166:186:2372Y3LT4:8:2327:46385:27091,LH00166:186:2372Y3LT4:8:2361:15052:5442,LH00166:186:2372Y3LT4:8:2374:9195:10010,LH00166:186:2372Y3LT4:8:2381:9074:28856,LH00166:186:2372Y3LT4:8:2389:43990:9351,LH00166:186:2372Y3LT4:8:2443:5514:14396,LH00166:186:2372Y3LT4:8:2465:27090:20687,LH00166:186:2372Y3LT4:8:2465:37348:21892,LH00166:186:2372Y3LT4:8:2465:37356:21906,LH00166:186:2372Y3LT4:8:2110:35876:9001	in-frame	Raftlin(10%)|Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Calcium-binding_EGF_domain(23%),EGF-like_domain(46%),LNR_domain(100%),NA(100%),NOTCH_protein(100%)	CDS/splice-site	CDS/splice-site	40	100	-/-	-/-	.	141	ENST00000295049	ENST00000256646	translocation	0.17960088691796008	0.015582603302581596	0.09759174511027084																																						659_bld	Arriba
fp_audit	659_bld	fusion	NOTCH2--RFTN2	RFTN2--NOTCH2	NOTCH2--RFTN2	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr2	chr1	RFTN2	NOTCH2	197675320	119941754	chr2:197675320-chr1:119941754	-,-	Arriba	1	0	13		13	PASS	in-frame	RFTN2--NOTCH2	NOTCH2--RFTN2	confidence:medium;duplicates(4)	medium	translocation	CDS/splice-site	CDS/splice-site	185	4386	4.0	0.0	0.0	0.0									3	10	True	duplicates(4)		FAIL		False	chr2:197675320	chr1:119941754	chr2:197675320-chr1:119941754	.	.	medium	185	4386	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(4)	CCTGATGATAGCAGCCCTGGAAAAATATTTTCTACCCTGAAGAGACCGCAAGTGGAAACAAAGACAGAATTTGCTTACGAATATGTATTGCTGGATTTTACTCTACAAG|ATCCTTGCCAGAATGGAGGTTCCTGTATGGATGGAGTGAATACTTTCTCCTGCCTCTGCCTTCCGGGTTTCACTGGGGATAAGTGCCAGACAGACATGAATGAGTGTCTGAGTGAACCCTGTAAGAATGGAGGGACCTGCTCTGACTACGTCAACAGTTACACTTGCAAGTGCCAGG	RFTN2	NOTCH2	ENSG00000162944	ENSG00000134250	PDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFTLQ|dPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQ	LH00166:186:2372Y3LT4:8:1126:48456:3494,LH00166:186:2372Y3LT4:8:1226:21743:17563,LH00166:186:2372Y3LT4:8:1288:24032:6114,LH00166:186:2372Y3LT4:8:1303:46846:11411,LH00166:186:2372Y3LT4:8:1385:4600:20968,LH00166:186:2372Y3LT4:8:1414:24679:25536,LH00166:186:2372Y3LT4:8:1489:11752:14858,LH00166:186:2372Y3LT4:8:2119:41272:16329,LH00166:186:2372Y3LT4:8:2185:50786:4363,LH00166:186:2372Y3LT4:8:2223:9203:6353,LH00166:186:2372Y3LT4:8:2265:11905:8006,LH00166:186:2372Y3LT4:8:2295:45406:20715,LH00166:186:2372Y3LT4:8:2365:19534:17997,LH00166:186:2372Y3LT4:8:2485:28004:25942,LH00166:186:2372Y3LT4:8:1287:22997:20687,LH00166:186:2372Y3LT4:8:1362:14276:13429,LH00166:186:2372Y3LT4:8:2244:30318:16526	in-frame	Raftlin(10%)|Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),EGF-like_domain(41%),LNR_domain(100%),NA(100%),NOTCH_protein(100%)	CDS/splice-site	CDS/splice-site	3	10	-/-	-/-	.	13	ENST00000295049	ENST00000256646	translocation	0.015957446808510637	0.0022747952684258415	0.009116121038468239																																						659_bld	Arriba
fp_audit	659_bld	fusion	NOTCH2--RFTN2	RFTN2--NOTCH2	NOTCH2--RFTN2	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_bld	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_bld_T1_TRNA_1	tRNA	altera_exact	ssf		412.00		84.76						False		cgp_rna_exp0034_lib_s08	200.00		128.09	cgp_rna_exp0034	H01		False		659_bld_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_bld_T1_TRNA_1_B2372Y3LT4_1	BND	chr2	chr1	RFTN2	NOTCH2	197675320	119949126	chr2:197675320-chr1:119949126	-,-	STAR-Fusion	1	1	141	0.9942	142	PASS	in-frame	RFTN2--NOTCH2	NOTCH2--RFTN2	"[""INTERCHROMOSOMAL[chr2--chr1]""]"											ONLY_REF_SPLICE	YES_LDAS	1.7819	False	False	False	GT	AG	141		True																																										1	ENST00000429081.1	1-139	ENST00000256646.7	2480-7416	0.9942	PASS	atggggtgcggacttagaaagctagaagaccctgatgatagcagccctggaaaaatattttctaccctgaagagaccgcaagtggaaacaaagacagaatttgcttacgaatatgtattgctggattttactctacaagGCAAGAATTGTCAGACAGTATTGGCTCCCTGTTCCCCAAACCCTTGTGAGAATGCTGCTGTTTGCAAAGAGTCACCAAATTTTGAGAGTTATACTTGCTTGTGTGCTCCTGGCTGGCAAGGTCAGCGGTGTACCATTGACATTGACGAGTGTATCTCCAAGCCCTGCATGAACCATGGTCTCTGCCATAACACCCAGGGCAGCTACATGTGTGAATGTCCACCAGGCTTCAGTGGTATGGACTGTGAGGAGGACATTGATGACTGCCTTGCCAATCCTTGCCAGAATGGAGGTTCCTGTATGGATGGAGTGAATACTTTCTCCTGCCTCTGCCTTCCGGGTTTCACTGGGGATAAGTGCCAGACAGACATGAATGAGTGTCTGAGTGAACCCTGTAAGAATGGAGGGACCTGCTCTGACTACGTCAACAGTTACACTTGCAAGTGCCAGGCAGGATTTGATGGAGTCCATTGTGAGAACAACATCAATGAGTGCACTGAGAGCTCCTGTTTCAATGGTGGCACATGTGTTGATGGGATTAACTCCTTCTCTTGCTTGTGCCCTGTGGGTTTCACTGGATCCTTCTGCCTCCATGAGATCAATGAATGCAGCTCTCATCCATGCCTGAATGAGGGAACGTGTGTTGATGGCCTGGGTACCTACCGCTGCAGCTGCCCCCTGGGCTACACTGGGAAAAACTGTCAGACCCTGGTGAATCTCTGCAGTCGGTCTCCATGTAAAAACAAAGGTACTTGCGTTCAGAAAAAAGCAGAGTCCCAGTGCCTATGTCCATCTGGATGGGCTGGTGCCTATTGTGACGTGCCCAATGTCTCTTGTGACATAGCAGCCTCCAGGAGAGGTGTGCTTGTTGAACACTTGTGCCAGCACTCAGGTGTCTGCATCAATGCTGGCAACACGCATTACTGTCAGTGCCCCCTGGGCTATACTGGGAGCTACTGTGAGGAGCAACTCGATGAGTGTGCGTCCAACCCCTGCCAGCACGGGGCAACATGCAGTGACTTCATTGGTGGATACAGATGCGAGTGTGTCCCAGGCTATCAGGGTGTCAACTGTGAGTATGAAGTGGATGAGTGCCAGAATCAGCCCTGCCAGAATGGAGGCACCTGTATTGACCTTGTGAACCATTTCAAGTGCTCTTGCCCACCAGGCACTCGGGGCCTACTCTGTGAAGAGAACATTGATGACTGTGCCCGGGGTCCCCATTGCCTTAATGGTGGTCAGTGCATGGATAGGATTGGAGGCTACAGTTGTCGCTGCTTGCCTGGCTTTGCTGGGGAGCGTTGTGAGGGAGACATCAACGAGTGCCTCTCCAACCCCTGCAGCTCTGAGGGCAGCCTGGACTGTATACAGCTCACCAATGACTACCTGTGTGTTTGCCGTAGTGCCTTTACTGGCCGGCACTGTGAAACCTTCGTCGATGTGTGTCCCCAGATGCCCTGCCTGAATGGAGGGACTTGTGCTGTGGCCAGTAACATGCCTGATGGTTTCATTTGCCGTTGTCCCCCGGGATTTTCCGGGGCAAGGTGCCAGAGCAGCTGTGGACAAGTGAAATGTAGGAAGGGGGAGCAGTGTGTGCACACCGCCTCTGGACCCCGCTGCTTCTGCCCCAGTCCCCGGGACTGCGAGTCAGGCTGTGCCAGTAGCCCCTGCCAGCACGGGGGCAGCTGCCACCCTCAGCGCCAGCCTCCTTATTACTCCTGCCAGTGTGCCCCACCATTCTCGGGTAGCCGCTGTGAACTCTACACGGCACCCCCCAGCACCCCTCCTGCCACCTGTCTGAGCCAGTATTGTGCCGACAAAGCTCGGGATGGCGTCTGTGATGAGGCCTGCAACAGCCATGCCTGCCAGTGGGATGGGGGTGACTGTTCTCTCACCATGGAGAACCCCTGGGCCAACTGCTCCTCCCCACTTCCCTGCTGGGATTATATCAACAACCAGTGTGATGAGCTGTGCAACACGGTCGAGTGCCTGTTTGACAACTTTGAATGCCAGGGGAACAGCAAGACATGCAAGTATGACAAATACTGTGCAGACCACTTCAAAGACAACCACTGTGACCAGGGGTGCAACAGTGAGGAGTGTGGTTGGGATGGGCTGGACTGTGCTGCTGACCAACCTGAGAACCTGGCAGAAGGTACCCTGGTTATTGTGGTATTGATGCCACCTGAACAACTGCTCCAGGATGCTCGCAGCTTCTTGCGGGCACTGGGTACCCTGCTCCACACCAACCTGCGCATTAAGCGGGACTCCCAGGGGGAACTCATGGTGTACCCCTATTATGGTGAGAAGTCAGCTGCTATGAAGAAACAGAGGATGACACGCAGATCCCTTCCTGGTGAACAAGAACAGGAGGTGGCTGGCTCTAAAGTCTTTCTGGAAATTGACAACCGCCAGTGTGTTCAAGACTCAGACCACTGCTTCAAGAACACGGATGCAGCAGCAGCTCTCCTGGCCTCTCACGCCATACAGGGGACCCTGTCATACCCTCTTGTGTCTGTCGTCAGTGAATCCCTGACTCCAGAACGCACTCAGCTCCTCTATCTCCTTGCTGTTGCTGTTGTCATCATTCTGTTTATTATTCTGCTGGGGGTAATCATGGCAAAACGAAAGCGTAAGCATGGCTCTCTCTGGCTGCCTGAAGGTTTCACTCTTCGCCGAGATGCAAGCAATCACAAGCGTCGTGAGCCAGTGGGACAGGATGCTGTGGGGCTGAAAAATCTCTCAGTGCAAGTCTCAGAAGCTAACCTAATTGGTACTGGAACAAGTGAACACTGGGTCGATGATGAAGGGCCCCAGCCAAAGAAAGTAAAGGCTGAAGATGAGGCCTTACTCTCAGAAGAAGATGACCCCATTGATCGACGGCCATGGACACAGCAGCACCTTGAAGCTGCAGACATCCGTAGGACACCATCGCTGGCTCTCACCCCTCCTCAGGCAGAGCAGGAGGTGGATGTGTTAGATGTGAATGTCCGTGGCCCAGATGGCTGCACCCCATTGATGTTGGCTTCTCTCCGAGGAGGCAGCTCAGATTTGAGTGATGAAGATGAAGATGCAGAGGACTCTTCTGCTAACATCATCACAGACTTGGTCTACCAGGGTGCCAGCCTCCAGGCCCAGACAGACCGGACTGGTGAGATGGCCCTGCACCTTGCAGCCCGCTACTCACGGGCTGATGCTGCCAAGCGTCTCCTGGATGCAGGTGCAGATGCCAATGCCCAGGACAACATGGGCCGCTGTCCACTCCATGCTGCAGTGGCAGCTGATGCCCAAGGTGTCTTCCAGATTCTGATTCGCAACCGAGTAACTGATCTAGATGCCAGGATGAATGATGGTACTACACCCCTGATCCTGGCTGCCCGCCTGGCTGTGGAGGGAATGGTGGCAGAACTGATCAACTGCCAAGCGGATGTGAATGCAGTGGATGACCATGGAAAATCTGCTCTTCACTGGGCAGCTGCTGTCAATAATGTGGAGGCAACTCTTTTGTTGTTGAAAAATGGGGCCAACCGAGACATGCAGGACAACAAGGAAGAGACACCTCTGTTTCTTGCTGCCCGGGAGGGGAGCTATGAAGCAGCCAAGATCCTGTTAGACCATTTTGCCAATCGAGACATCACAGACCATATGGATCGTCTTCCCCGGGATGTGGCTCGGGATCGCATGCACCATGACATTGTGCGCCTTCTGGATGAATACAATGTGACCCCAAGCCCTCCAGGCACCGTGTTGACTTCTGCTCTCTCACCTGTCATCTGTGGGCCCAACAGATCTTTCCTCAGCCTGAAGCACACCCCAATGGGCAAGAAGTCTAGACGGCCCAGTGCCAAGAGTACCATGCCTACTAGCCTCCCTAACCTTGCCAAGGAGGCAAAGGATGCCAAGGGTAGTAGGAGGAAGAAGTCTCTGAGTGAGAAGGTCCAACTGTCTGAGAGTTCAGTAACTTTATCCCCTGTTGATTCCCTAGAATCTCCTCACACGTATGTTTCCGACACCACATCCTCTCCAATGATTACATCCCCTGGGATCTTACAGGCCTCACCCAACCCTATGTTGGCCACTGCCGCCCCTCCTGCCCCAGTCCATGCCCAGCATGCACTATCTTTTTCTAACCTTCATGAAATGCAGCCTTTGGCACATGGGGCCAGCACTGTGCTTCCCTCAGTGAGCCAGTTGCTATCCCACCACCACATTGTGTCTCCAGGCAGTGGCAGTGCTGGAAGCTTGAGTAGGCTCCATCCAGTCCCAGTCCCAGCAGATTGGATGAACCGCATGGAGGTGAATGAGACCCAGTACAATGAGATGTTTGGTATGGTCCTGGCTCCAGCTGAGGGCACCCATCCTGGCATAGCTCCCCAGAGCAGGCCACCTGAAGGGAAGCACATAACCACCCCTCGGGAGCCCTTGCCCCCCATTGTGACTTTCCAGCTCATCCCTAAAGGCAGTATTGCCCAACCAGCGGGGGCTCCCCAGCCTCAGTCCACCTGCCCTCCAGCTGTTGCGGGCCCCCTGCCCACCATGTACCAGATTCCAGAAATGGCCCGTTTGCCCAGTGTGGCTTTCCCCACTGCCATGATGCCCCAGCAGGACGGGCAGGTAGCTCAGACCATTCTCCCAGCCTATCATCCTTTCCCAGCCTCTGTGGGCAAGTACCCCACACCCCCTTCACAGCACAGTTATGCTTCCTCAAATGCTGCTGAGCGAACACCCAGTCACAGTGGTCACCTCCAGGGTGAGCATCCCTACCTGACACCATCCCCAGAGTCTCCTGACCAGTGGTCAAGTTCATCACCCCACTCTGCTTCTGACTGGTCAGATGTGACCACCAGCCCTACCCCTGGGGGTGCTGGAGGAGGTCAGCGGGGACCTGGGACACACATGTCTGAGCCACCACACAACAACATGCAGGTTTATGCGTGA	chr2|-|[0]197675320-197675458[0]<==>chr1|-|[2]119915306-119916694[0]|[2]119917665-119917762[1]|[0]119918406-119918553[0]|[2]119919312-119919613[1]|[0]119920229-119920397[0]|[2]119921713-119921809[2]|[1]119922236-119922446[1]|[0]119922636-119922778[2]|[1]119923637-119923984[2]|[1]119925305-119925810[0]|[2]119926499-119926611[1]|[0]119928976-119929212[1]|[0]119935472-119935604[0]|[2]119937282-119937466[1]|[0]119937857-119938010[0]|[2]119940555-119940756[2]|[1]119941526-119941754[1]|[0]119948414-119948566[1]|[0]119949007-119949126[1]	MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFTLQGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCVHTASGPRCFCPSPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYTAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGWDGLDCAADQPENLAEGTLVIVVLMPPEQLLQDARSFLRALGTLLHTNLRIKRDSQGELMVYPYYGEKSAAMKKQRMTRRSLPGEQEQEVAGSKVFLEIDNRQCVQDSDHCFKNTDAAAALLASHAIQGTLSYPLVSVVSESLTPERTQLLYLLAVAVVIILFIILLGVIMAKRKRKHGSLWLPEGFTLRRDASNHKRREPVGQDAVGLKNLSVQVSEANLIGTGTSEHWVDDEGPQPKKVKAEDEALLSEEDDPIDRRPWTQQHLEAADIRRTPSLALTPPQAEQEVDVLDVNVRGPDGCTPLMLASLRGGSSDLSDEDEDAEDSSANIITDLVYQGASLQAQTDRTGEMALHLAARYSRADAAKRLLDAGADANAQDNMGRCPLHAAVAADAQGVFQILIRNRVTDLDARMNDGTTPLILAARLAVEGMVAELINCQADVNAVDDHGKSALHWAAAVNNVEATLLLLKNGANRDMQDNKEETPLFLAAREGSYEAAKILLDHFANRDITDHMDRLPRDVARDRMHHDIVRLLDEYNVTPSPPGTVLTSALSPVICGPNRSFLSLKHTPMGKKSRRPSAKSTMPTSLPNLAKEAKDAKGSRRKKSLSEKVQLSESSVTLSPVDSLESPHTYVSDTTSSPMITSPGILQASPNPMLATAAPPAPVHAQHALSFSNLHEMQPLAHGASTVLPSVSQLLSHHHIVSPGSGSAGSLSRLHPVPVPADWMNRMEVNETQYNEMFGMVLAPAEGTHPGIAPQSRPPEGKHITTPREPLPPIVTFQLIPKGSIAQPAGAPQPQSTCPPAVAGPLPTMYQIPEMARLPSVAFPTAMMPQQDGQVAQTILPAYHPFPASVGKYPTPPSQHSYASSNAAERTPSHSGHLQGEHPYLTPSPESPDQWSSSSPHSASDWSDVTTSPTPGGAGGGQRGPGTHMSEPPHNNMQVYA*	RFTN2--NOTCH2	141	LH00166:186:2372Y3LT4:8:1102:34452:9954,LH00166:186:2372Y3LT4:8:1105:10991:8300,LH00166:186:2372Y3LT4:8:1107:30731:8917,LH00166:186:2372Y3LT4:8:1117:36450:5484,LH00166:186:2372Y3LT4:8:1130:9260:23826,LH00166:186:2372Y3LT4:8:1133:10902:24905,LH00166:186:2372Y3LT4:8:1136:3702:24597,LH00166:186:2372Y3LT4:8:1149:21443:28983,LH00166:186:2372Y3LT4:8:1150:19866:20561,LH00166:186:2372Y3LT4:8:1153:38384:28226,LH00166:186:2372Y3LT4:8:1159:50535:12644,LH00166:186:2372Y3LT4:8:1168:33951:15194,LH00166:186:2372Y3LT4:8:1169:47509:16848,LH00166:186:2372Y3LT4:8:1178:6356:8342,LH00166:186:2372Y3LT4:8:1179:44160:29095,LH00166:186:2372Y3LT4:8:1188:27689:17997,LH00166:186:2372Y3LT4:8:1191:38837:19118,LH00166:186:2372Y3LT4:8:1192:5765:1518,LH00166:186:2372Y3LT4:8:1195:39379:6941,LH00166:186:2372Y3LT4:8:1196:47437:9604,LH00166:186:2372Y3LT4:8:1198:50705:2653,LH00166:186:2372Y3LT4:8:1204:33125:7039,LH00166:186:2372Y3LT4:8:1205:29865:5120,LH00166:186:2372Y3LT4:8:1206:9745:7852,LH00166:186:2372Y3LT4:8:1228:18863:3578,LH00166:186:2372Y3LT4:8:1230:25027:28772,LH00166:186:2372Y3LT4:8:1237:15991:11803,LH00166:186:2372Y3LT4:8:1239:46231:1687,LH00166:186:2372Y3LT4:8:1240:35941:28366,LH00166:186:2372Y3LT4:8:1246:32171:13373,LH00166:186:2372Y3LT4:8:1262:38869:8553,LH00166:186:2372Y3LT4:8:1263:32632:14648,LH00166:186:2372Y3LT4:8:1264:18038:4027,LH00166:186:2372Y3LT4:8:1271:17326:2766,LH00166:186:2372Y3LT4:8:1275:20319:26138,LH00166:186:2372Y3LT4:8:1275:6881:11495,LH00166:186:2372Y3LT4:8:1282:27462:3312,LH00166:186:2372Y3LT4:8:1292:1995:28983,LH00166:186:2372Y3LT4:8:1293:19429:27119,LH00166:186:2372Y3LT4:8:1295:32252:21220,LH00166:186:2372Y3LT4:8:1314:44225:26741,LH00166:186:2372Y3LT4:8:1328:21937:25830,LH00166:186:2372Y3LT4:8:1328:34954:11523,LH00166:186:2372Y3LT4:8:1330:12496:26404,LH00166:186:2372Y3LT4:8:1331:46409:22397,LH00166:186:2372Y3LT4:8:1340:11363:21696,LH00166:186:2372Y3LT4:8:1345:29655:3746,LH00166:186:2372Y3LT4:8:1348:46150:27133,LH00166:186:2372Y3LT4:8:1355:22188:4097,LH00166:186:2372Y3LT4:8:1356:6137:8384,LH00166:186:2372Y3LT4:8:1357:12666:6465,LH00166:186:2372Y3LT4:8:1357:16735:11495,LH00166:186:2372Y3LT4:8:1376:26217:2611,LH00166:186:2372Y3LT4:8:1379:17366:11467,LH00166:186:2372Y3LT4:8:1379:32446:24723,LH00166:186:2372Y3LT4:8:1391:2027:7095,LH00166:186:2372Y3LT4:8:1391:29736:11061,LH00166:186:2372Y3LT4:8:1391:40423:16512,LH00166:186:2372Y3LT4:8:1397:45268:6605,LH00166:186:2372Y3LT4:8:1403:29493:27904,LH00166:186:2372Y3LT4:8:1409:31087:3396,LH00166:186:2372Y3LT4:8:1412:41588:3424,LH00166:186:2372Y3LT4:8:1415:30213:6843,LH00166:186:2372Y3LT4:8:1416:40673:8398,LH00166:186:2372Y3LT4:8:1417:20028:14928,LH00166:186:2372Y3LT4:8:1429:15869:27735,LH00166:186:2372Y3LT4:8:1430:13798:22859,LH00166:186:2372Y3LT4:8:1435:32964:18557,LH00166:186:2372Y3LT4:8:1436:47954:20029,LH00166:186:2372Y3LT4:8:1437:20109:16498,LH00166:186:2372Y3LT4:8:1438:21435:23560,LH00166:186:2372Y3LT4:8:1439:18410:28492,LH00166:186:2372Y3LT4:8:1444:49928:22691,LH00166:186:2372Y3LT4:8:1449:3014:11383,LH00166:186:2372Y3LT4:8:1452:20246:4657,LH00166:186:2372Y3LT4:8:1459:2214:14172,LH00166:186:2372Y3LT4:8:1462:51368:26166,LH00166:186:2372Y3LT4:8:1471:27115:11369,LH00166:186:2372Y3LT4:8:1474:17002:29417,LH00166:186:2372Y3LT4:8:1482:16816:13709,LH00166:186:2372Y3LT4:8:1482:46498:27792,LH00166:186:2372Y3LT4:8:1488:38594:15895,LH00166:186:2372Y3LT4:8:2101:20829:15923,LH00166:186:2372Y3LT4:8:2106:42324:24120,LH00166:186:2372Y3LT4:8:2111:10352:2738,LH00166:186:2372Y3LT4:8:2113:26030:22355,LH00166:186:2372Y3LT4:8:2120:45560:21010,LH00166:186:2372Y3LT4:8:2130:38400:5218,LH00166:186:2372Y3LT4:8:2132:35099:2135,LH00166:186:2372Y3LT4:8:2134:14292:28114,LH00166:186:2372Y3LT4:8:2155:11080:3746,LH00166:186:2372Y3LT4:8:2155:13976:9043,LH00166:186:2372Y3LT4:8:2155:7529:17885,LH00166:186:2372Y3LT4:8:2163:13960:10556,LH00166:186:2372Y3LT4:8:2165:45552:28702,LH00166:186:2372Y3LT4:8:2166:28360:15349,LH00166:186:2372Y3LT4:8:2167:6720:18557,LH00166:186:2372Y3LT4:8:2167:7383:28058,LH00166:186:2372Y3LT4:8:2174:43222:1743,LH00166:186:2372Y3LT4:8:2183:50818:27147,LH00166:186:2372Y3LT4:8:2193:24720:14228,LH00166:186:2372Y3LT4:8:2194:48958:16217,LH00166:186:2372Y3LT4:8:2205:21541:19510,LH00166:186:2372Y3LT4:8:2232:33813:19244,LH00166:186:2372Y3LT4:8:2238:11800:3873,LH00166:186:2372Y3LT4:8:2241:19583:3564,LH00166:186:2372Y3LT4:8:2248:3006:10809,LH00166:186:2372Y3LT4:8:2255:15392:12084,LH00166:186:2372Y3LT4:8:2259:50228:9141,LH00166:186:2372Y3LT4:8:2270:22163:27455,LH00166:186:2372Y3LT4:8:2275:23239:22789,LH00166:186:2372Y3LT4:8:2275:5983:12798,LH00166:186:2372Y3LT4:8:2279:17487:23476,LH00166:186:2372Y3LT4:8:2291:38675:7348,LH00166:186:2372Y3LT4:8:2307:5166:10514,LH00166:186:2372Y3LT4:8:2311:25642:8903,LH00166:186:2372Y3LT4:8:2318:31119:20687,LH00166:186:2372Y3LT4:8:2323:1858:18571,LH00166:186:2372Y3LT4:8:2323:38578:26628,LH00166:186:2372Y3LT4:8:2327:46385:27091,LH00166:186:2372Y3LT4:8:2349:50309:12168,LH00166:186:2372Y3LT4:8:2361:15052:5442,LH00166:186:2372Y3LT4:8:2374:9195:10010,LH00166:186:2372Y3LT4:8:2377:36005:25620,LH00166:186:2372Y3LT4:8:2386:15449:15012,LH00166:186:2372Y3LT4:8:2390:47380:19230,LH00166:186:2372Y3LT4:8:2402:31329:9758,LH00166:186:2372Y3LT4:8:2416:7690:2247,LH00166:186:2372Y3LT4:8:2424:8208:26040,LH00166:186:2372Y3LT4:8:2428:5352:12854,LH00166:186:2372Y3LT4:8:2432:18879:16357,LH00166:186:2372Y3LT4:8:2439:28474:1280,LH00166:186:2372Y3LT4:8:2442:37931:16736,LH00166:186:2372Y3LT4:8:2443:5514:14396,LH00166:186:2372Y3LT4:8:2443:9284:12126,LH00166:186:2372Y3LT4:8:2457:43594:7572,LH00166:186:2372Y3LT4:8:2465:37348:21892,LH00166:186:2372Y3LT4:8:2474:10328:1406,LH00166:186:2372Y3LT4:8:2492:48278:12406,LH00166:186:2372Y3LT4:8:2494:48286:14550,LH00166:186:2372Y3LT4:8:2496:31880:15082	YES_LDAS	GT	1.7819	chr2:197675320:-	RFTN2^ENSG00000162944.11	Raftlin|1-112|1e-58	.	INFRAME	AG	1.8892	chr1:119949126:-	NOTCH2^ENSG00000134250.20	1	LH00166:186:2372Y3LT4:8:2110:35876:9001	ONLY_REF_SPLICE		"[""INTERCHROMOSOMAL[chr2--chr1]""]"		False	chr2:197675320-chr1:119949126	141.0	1.0		142	659_bld	STAR-Fusion
fp_audit	659_cX2	fusion	AC078927--ROS1	AC078927--ROS1	AC078927--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr12	chr6	AC078927	ROS1	66169855	117329520	chr12:66169855-chr6:117329520	-,+	Arriba	1	0	162		162	PASS	out-of-frame	AC078927--ROS1	AC078927--ROS1	confidence:medium;duplicates(38),mismatches(4),multimappers(1)	medium	translocation/5'-5'	CDS/splice-site	intron	49419	129	38.0	4.0	0.0	1.0									117	45	False	duplicates(38),mismatches(4),multimappers(1)		FAIL		False	chr12:66169855	chr6:117329520	chr12:66169855-chr6:117329520	.	.	medium	49419	129	upstream	upstream	0	confidence_below_min(medium<high)	duplicates(38),mismatches(4),multimappers(1)	CGGGACCGGTAGGGGTGCTGTTGCCATCATGGCTGACCCCGACCCCCGGTACCCTCGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGGCCTCCGCCACCGTGCACATCCGAATGG|AATATATTAAGAGGAAAGACAACATTAAAGAAATATTCAGAGGCGGGGCCAAGATGGCCGACTAGAAGCAACTCCGTTCAGAGGTTCCTATTGAAAAAAACCATAATAAGTGTGTGAGTCCTTCACCGGCAAGGTATCTAGATTCGC	AC078927.1	ROS1	ENSG00000228144	ENSG00000047936	MADPDPRYPRSSIEDDFNYGSSVASATVHIRM|eyikrkdnikeifrggakmad*	LH00166:186:2372Y3LT4:8:1168:14882:12938,LH00166:186:2372Y3LT4:8:1197:40641:20645,LH00166:186:2372Y3LT4:8:1198:43173:2331,LH00166:186:2372Y3LT4:8:1202:33295:15433,LH00166:186:2372Y3LT4:8:1247:40398:9576,LH00166:186:2372Y3LT4:8:1277:40050:6731,LH00166:186:2372Y3LT4:8:1279:48246:17535,LH00166:186:2372Y3LT4:8:1296:32098:25465,LH00166:186:2372Y3LT4:8:1298:6655:26012,LH00166:186:2372Y3LT4:8:1301:44055:18936,LH00166:186:2372Y3LT4:8:1310:7804:16007,LH00166:186:2372Y3LT4:8:1321:9276:15727,LH00166:186:2372Y3LT4:8:1350:25205:27315,LH00166:186:2372Y3LT4:8:1353:30650:21360,LH00166:186:2372Y3LT4:8:1355:41943:23209,LH00166:186:2372Y3LT4:8:1368:31030:11173,LH00166:186:2372Y3LT4:8:1369:42397:22285,LH00166:186:2372Y3LT4:8:1382:45624:8427,LH00166:186:2372Y3LT4:8:1394:35334:14368,LH00166:186:2372Y3LT4:8:1428:20092:19804,LH00166:186:2372Y3LT4:8:1457:35577:8230,LH00166:186:2372Y3LT4:8:1485:5903:2205,LH00166:186:2372Y3LT4:8:2138:41968:14872,LH00166:186:2372Y3LT4:8:2175:21233:13065,LH00166:186:2372Y3LT4:8:2177:33740:18669,LH00166:186:2372Y3LT4:8:2204:1235:17268,LH00166:186:2372Y3LT4:8:2251:18766:27399,LH00166:186:2372Y3LT4:8:2259:46846:29739,LH00166:186:2372Y3LT4:8:2259:46862:29739,LH00166:186:2372Y3LT4:8:2275:41620:9505,LH00166:186:2372Y3LT4:8:2279:2990:3578,LH00166:186:2372Y3LT4:8:2291:15659:2401,LH00166:186:2372Y3LT4:8:2291:46498:7530,LH00166:186:2372Y3LT4:8:2310:24979:20841,LH00166:186:2372Y3LT4:8:2312:42817:6114,LH00166:186:2372Y3LT4:8:2339:12277:22635,LH00166:186:2372Y3LT4:8:2349:45139:27679,LH00166:186:2372Y3LT4:8:2350:34865:7894,LH00166:186:2372Y3LT4:8:2377:42041:26208,LH00166:186:2372Y3LT4:8:2378:31111:24373,LH00166:186:2372Y3LT4:8:2398:5320:27483,LH00166:186:2372Y3LT4:8:2398:5328:27497,LH00166:186:2372Y3LT4:8:2405:43739:13765,LH00166:186:2372Y3LT4:8:2418:32721:8749,LH00166:186:2372Y3LT4:8:2440:32891:20897,LH00166:186:2372Y3LT4:8:2445:22778:11397,LH00166:186:2372Y3LT4:8:2476:8726:16624,LH00166:186:2372Y3LT4:8:2482:47315:3957,LH00166:186:2372Y3LT4:8:2487:33813:9744,LH00166:186:2372Y3LT4:8:1106:18127:29627,LH00166:186:2372Y3LT4:8:1106:24623:23448,LH00166:186:2372Y3LT4:8:1106:24631:23462,LH00166:186:2372Y3LT4:8:1111:22584:20001,LH00166:186:2372Y3LT4:8:1111:26872:24036,LH00166:186:2372Y3LT4:8:1123:12747:13079,LH00166:186:2372Y3LT4:8:1123:12763:13079,LH00166:186:2372Y3LT4:8:1126:27988:20925,LH00166:186:2372Y3LT4:8:1128:32324:18151,LH00166:186:2372Y3LT4:8:1130:45115:15867,LH00166:186:2372Y3LT4:8:1130:7148:12070,LH00166:186:2372Y3LT4:8:1147:38311:23027,LH00166:186:2372Y3LT4:8:1151:27980:13177,LH00166:186:2372Y3LT4:8:1152:35399:8959,LH00166:186:2372Y3LT4:8:1153:42421:23560,LH00166:186:2372Y3LT4:8:1153:42437:23560,LH00166:186:2372Y3LT4:8:1156:17285:14886,LH00166:186:2372Y3LT4:8:1163:13329:12658,LH00166:186:2372Y3LT4:8:1167:18960:28156,LH00166:186:2372Y3LT4:8:1169:34565:26320,LH00166:186:2372Y3LT4:8:1177:30448:24569,LH00166:186:2372Y3LT4:8:1178:23806:5834,LH00166:186:2372Y3LT4:8:1186:12852:19819,LH00166:186:2372Y3LT4:8:1188:24542:18459,LH00166:186:2372Y3LT4:8:1198:43173:15503,LH00166:186:2372Y3LT4:8:1205:39428:14928,LH00166:186:2372Y3LT4:8:1207:32155:15895,LH00166:186:2372Y3LT4:8:1209:16873:1869,LH00166:186:2372Y3LT4:8:1213:20214:28310,LH00166:186:2372Y3LT4:8:1221:12229:27679,LH00166:186:2372Y3LT4:8:1223:5498:18039,LH00166:186:2372Y3LT4:8:1227:6226:13975,LH00166:186:2372Y3LT4:8:1238:15327:3704,LH00166:186:2372Y3LT4:8:1239:25480:7109,LH00166:186:2372Y3LT4:8:1245:27899:6731,LH00166:186:2372Y3LT4:8:1253:38869:17520,LH00166:186:2372Y3LT4:8:1261:14559:7810,LH00166:186:2372Y3LT4:8:1263:23676:29207,LH00166:186:2372Y3LT4:8:1279:3451:29543,LH00166:186:2372Y3LT4:8:1286:43804:19847,LH00166:186:2372Y3LT4:8:1291:34638:21934,LH00166:186:2372Y3LT4:8:1302:42558:13625,LH00166:186:2372Y3LT4:8:1303:38934:19370,LH00166:186:2372Y3LT4:8:1305:34080:8300,LH00166:186:2372Y3LT4:8:1312:15619:1434,LH00166:186:2372Y3LT4:8:1314:28983:12840,LH00166:186:2372Y3LT4:8:1315:11379:19987,LH00166:186:2372Y3LT4:8:1328:10716:20631,LH00166:186:2372Y3LT4:8:1329:28506:4755,LH00166:186:2372Y3LT4:8:1335:14802:4279,LH00166:186:2372Y3LT4:8:1337:17067:25185,LH00166:186:2372Y3LT4:8:1338:28271:23602,LH00166:186:2372Y3LT4:8:1342:24453:21892,LH00166:186:2372Y3LT4:8:1343:21718:3844,LH00166:186:2372Y3LT4:8:1352:7618:7390,LH00166:186:2372Y3LT4:8:1353:32664:2037,LH00166:186:2372Y3LT4:8:1366:35836:18627,LH00166:186:2372Y3LT4:8:1367:28247:21878,LH00166:186:2372Y3LT4:8:1373:16800:25928,LH00166:186:2372Y3LT4:8:1384:38691:18305,LH00166:186:2372Y3LT4:8:1389:40754:14200,LH00166:186:2372Y3LT4:8:1391:26896:13709,LH00166:186:2372Y3LT4:8:1393:48593:6815,LH00166:186:2372Y3LT4:8:1403:41013:4783,LH00166:186:2372Y3LT4:8:1405:35763:22201,LH00166:186:2372Y3LT4:8:1408:28830:8651,LH00166:186:2372Y3LT4:8:1414:37243:6269,LH00166:186:2372Y3LT4:8:1419:23539:24737,LH00166:186:2372Y3LT4:8:1419:5183:15895,LH00166:186:2372Y3LT4:8:1425:14332:3971,LH00166:186:2372Y3LT4:8:1438:26742:7754,LH00166:186:2372Y3LT4:8:1441:36062:12378,LH00166:186:2372Y3LT4:8:1444:18952:5722,LH00166:186:2372Y3LT4:8:1450:51312:13401,LH00166:186:2372Y3LT4:8:1472:6962:14186,LH00166:186:2372Y3LT4:8:1472:6970:14200,LH00166:186:2372Y3LT4:8:1473:32211:11173,LH00166:186:2372Y3LT4:8:1487:5951:11005,LH00166:186:2372Y3LT4:8:1487:5959:10991,LH00166:186:2372Y3LT4:8:1495:44144:21612,LH00166:186:2372Y3LT4:8:1496:20723:2457,LH00166:186:2372Y3LT4:8:2101:31766:7376,LH00166:186:2372Y3LT4:8:2103:25286:13611,LH00166:186:2372Y3LT4:8:2105:38319:25564,LH00166:186:2372Y3LT4:8:2107:48092:8581,LH00166:186:2372Y3LT4:8:2113:14793:10711,LH00166:186:2372Y3LT4:8:2123:38829:17058,LH00166:186:2372Y3LT4:8:2130:10304:12770,LH00166:186:2372Y3LT4:8:2138:4341:21640,LH00166:186:2372Y3LT4:8:2148:22972:16974,LH00166:186:2372Y3LT4:8:2157:8354:15335,LH00166:186:2372Y3LT4:8:2162:42178:25437,LH00166:186:2372Y3LT4:8:2166:8742:24919,LH00166:186:2372Y3LT4:8:2167:44322:2808,LH00166:186:2372Y3LT4:8:2169:48545:5638,LH00166:186:2372Y3LT4:8:2171:27058:23854,LH00166:186:2372Y3LT4:8:2175:38481:2135,LH00166:186:2372Y3LT4:8:2180:10069:16652,LH00166:186:2372Y3LT4:8:2180:37882:6507,LH00166:186:2372Y3LT4:8:2181:15271:12854,LH00166:186:2372Y3LT4:8:2182:17487:7866,LH00166:186:2372Y3LT4:8:2184:23506:22999,LH00166:186:2372Y3LT4:8:2185:10805:19664,LH00166:186:2372Y3LT4:8:2185:11598:13891,LH00166:186:2372Y3LT4:8:2188:32502:24961,LH00166:186:2372Y3LT4:8:2190:32632:1673,LH00166:186:2372Y3LT4:8:2194:34428:17310,LH00166:186:2372Y3LT4:8:2201:20537:4377,LH00166:186:2372Y3LT4:8:2225:22066:26614,LH00166:186:2372Y3LT4:8:2232:34266:28408,LH00166:186:2372Y3LT4:8:2235:30715:1855,LH00166:186:2372Y3LT4:8:2240:6461:26628,LH00166:186:2372Y3LT4:8:2255:37551:15096,LH00166:186:2372Y3LT4:8:2258:32284:1575,LH00166:186:2372Y3LT4:8:2275:12933:12196,LH00166:186:2372Y3LT4:8:2286:44063:5918,LH00166:186:2372Y3LT4:8:2293:13871:19482,LH00166:186:2372Y3LT4:8:2309:30957:27245,LH00166:186:2372Y3LT4:8:2310:24768:21262,LH00166:186:2372Y3LT4:8:2316:30084:21080,LH00166:186:2372Y3LT4:8:2324:46191:1420,LH00166:186:2372Y3LT4:8:2327:32130:1673,LH00166:186:2372Y3LT4:8:2332:19267:26558,LH00166:186:2372Y3LT4:8:2340:47938:6521,LH00166:186:2372Y3LT4:8:2342:23595:19566,LH00166:186:2372Y3LT4:8:2345:1348:10234,LH00166:186:2372Y3LT4:8:2356:23207:2639,LH00166:186:2372Y3LT4:8:2364:39848:4643,LH00166:186:2372Y3LT4:8:2365:3435:8104,LH00166:186:2372Y3LT4:8:2375:33117:9463,LH00166:186:2372Y3LT4:8:2382:22034:6969,LH00166:186:2372Y3LT4:8:2383:2497:18529,LH00166:186:2372Y3LT4:8:2386:49912:8847,LH00166:186:2372Y3LT4:8:2397:41207:17759,LH00166:186:2372Y3LT4:8:2414:3055:21178,LH00166:186:2372Y3LT4:8:2416:40536:10234,LH00166:186:2372Y3LT4:8:2423:22333:11579,LH00166:186:2372Y3LT4:8:2424:21581:18459,LH00166:186:2372Y3LT4:8:2426:44006:23784,LH00166:186:2372Y3LT4:8:2435:17673:5918,LH00166:186:2372Y3LT4:8:2436:11121:8777,LH00166:186:2372Y3LT4:8:2437:7723:9926,LH00166:186:2372Y3LT4:8:2442:51773:15853,LH00166:186:2372Y3LT4:8:2445:36920:5176,LH00166:186:2372Y3LT4:8:2448:16088:9169,LH00166:186:2372Y3LT4:8:2454:12981:2527,LH00166:186:2372Y3LT4:8:2467:39735:20982,LH00166:186:2372Y3LT4:8:2470:4641:11285,LH00166:186:2372Y3LT4:8:2473:21896:28422,LH00166:186:2372Y3LT4:8:2483:29121:15236,LH00166:186:2372Y3LT4:8:2485:44484:27918,LH00166:186:2372Y3LT4:8:2486:45010:7165,LH00166:186:2372Y3LT4:8:2486:45026:7165,LH00166:186:2372Y3LT4:8:2493:27195:4699,LH00166:186:2372Y3LT4:8:2495:11776:22523,LH00166:186:2372Y3LT4:8:2497:30164:26657	out-of-frame	.	CDS/splice-site	intron	117	45	-/-	-/+	.	162	ENST00000539652	.	translocation/5'-5'	0.0023619186046511626	0.25862068965517243	0.1304913041299118																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	AC109136--ROS1	AC109136--ROS1	AC109136--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr16	chr6	AC109136	ROS1	55102187	117329446	chr16:55102187-chr6:117329446	-,-	Arriba	1	3	29		32	PASS		AC109136--ROS1	AC109136--ROS1	confidence:high;duplicates(13)	high	translocation	intergenic	CDS/splice-site	13	265	13.0	0.0	0.0	0.0									6	23		duplicates(13)		PASS		False	chr16:55102187	chr6:117329446	chr16:55102187-chr6:117329446	.	.	high	13	265	upstream	downstream	3		duplicates(13)	CATCCTTAGCACGTTGACTTTGGACCACATGTTTTTGCCTCCTGGTCCCAAAATGGCTGCTGGCTCTCCAGTCTTCACATCTGAATCCAATGCAGAAAAAAAGAGGATCAAGGCAAAAGCTTTGTCTTAAGGAGATTTCATCTTTGTACTGGTTAAG|CTGGAGTCCCAAATAAACCAGGCATTCCCAAATTACTAGAAGGGAGTAAAAATTCAATACAGTGGGAGAAAGCTGAAGATAATGGATGTAGAATTACATACTATATCCTTGAGATAAG___AAAGAGCACTTCAAATAATTTACAGAACCAGAA	AC109136.1(52869),AC109462.1(157782)	ROS1	.	ENSG00000047936	.	LH00166:186:2372Y3LT4:8:1141:6898:12700,LH00166:186:2372Y3LT4:8:1144:15853:3214,LH00166:186:2372Y3LT4:8:1182:12221:27609,LH00166:186:2372Y3LT4:8:1184:13984:10767,LH00166:186:2372Y3LT4:8:1184:14001:10767,LH00166:186:2372Y3LT4:8:1198:26006:28002,LH00166:186:2372Y3LT4:8:1198:34088:14228,LH00166:186:2372Y3LT4:8:1265:32049:11817,LH00166:186:2372Y3LT4:8:1295:45535:8721,LH00166:186:2372Y3LT4:8:1328:3848:19804,LH00166:186:2372Y3LT4:8:1355:45649:4741,LH00166:186:2372Y3LT4:8:1373:14802:25185,LH00166:186:2372Y3LT4:8:1382:1129:17983,LH00166:186:2372Y3LT4:8:1404:46506:3760,LH00166:186:2372Y3LT4:8:1412:50017:18165,LH00166:186:2372Y3LT4:8:1455:43537:16638,LH00166:186:2372Y3LT4:8:1455:43545:16624,LH00166:186:2372Y3LT4:8:2130:18758:28646,LH00166:186:2372Y3LT4:8:2189:18224:6647,LH00166:186:2372Y3LT4:8:2215:23976:20253,LH00166:186:2372Y3LT4:8:2237:25197:17296,LH00166:186:2372Y3LT4:8:2237:25205:17310,LH00166:186:2372Y3LT4:8:2241:22746:17030,LH00166:186:2372Y3LT4:8:2270:27721:13121,LH00166:186:2372Y3LT4:8:2279:10619:19006,LH00166:186:2372Y3LT4:8:2340:27624:7404,LH00166:186:2372Y3LT4:8:2347:36766:18445,LH00166:186:2372Y3LT4:8:2348:29550:8216,LH00166:186:2372Y3LT4:8:2374:42170:29291,LH00166:186:2372Y3LT4:8:2408:11881:8441,LH00166:186:2372Y3LT4:8:2416:10910:25311,LH00166:186:2372Y3LT4:8:2432:11299:25956,LH00166:186:2372Y3LT4:8:2486:31580:19804,LH00166:186:2372Y3LT4:8:2489:13904:19790,LH00166:186:2372Y3LT4:8:1237:31329:27581,LH00166:186:2372Y3LT4:8:1402:31459:27525,LH00166:186:2372Y3LT4:8:1471:51029:28548,LH00166:186:2372Y3LT4:8:2164:32591:7796,LH00166:186:2372Y3LT4:8:2365:38125:12000,LH00166:186:2372Y3LT4:8:2447:38594:5526,LH00166:186:2372Y3LT4:8:1282:45252:28744,LH00166:186:2372Y3LT4:8:1283:40398:5204,LH00166:186:2372Y3LT4:8:2382:38441:24485,LH00166:186:2372Y3LT4:8:2382:38449:24499,LH00166:186:2372Y3LT4:8:2487:40293:10711	.	|Protein_kinase_domain(100%)	intergenic	CDS/splice-site	6	23	./-	-/-	.	32	.	ENST00000368507	translocation	0.36585365853658536	0.0846286701208981	0.22524116432874172																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	BRAF--HERC2P10	HERC2P10--BRAF	BRAF--HERC2P10	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr15	chr7	HERC2P10	BRAF	30836910	140927071	chr15:30836910-chr7:140927071	+,+	Arriba	1	0	5		5	PASS		HERC2P10--BRAF	BRAF--HERC2P10	confidence:high;duplicates(1)	high	translocation	exon/splice-site	intergenic	194	1	1.0	0.0	0.0	0.0									4	1		duplicates(1)		FAIL		False	chr15:30836910	chr7:140927071	chr15:30836910-chr7:140927071	.	.	high	194	1	downstream	upstream	0	total_reads_below_min(5.0<8.0)	duplicates(1)	GTGGCAAACAGCTGCTCCACAGCCCATTCTTTAAG___GTACTGGTAGCTCTTGCTTGTGACCTGGAGCTGGACACTCTGCCTTGCTGTGCCaAGACGCACAAGTGGGCCTGGTTCCaGAGGTACTGCATGGCCTCCCGCATTGCTGTGGCCCTTGACAAAAGAACACCATTGCCCCGTCTGTTTCTTGATGAG|GCCATTCTAAAGTCCTACAGTATCCAGATGAGAAACGAGAGAAAGCATAAGCTTTGGAGTCCAAAGATCAGGATTTTAGCGTCAGCACTCCACACCTTAGCTATACAATCTCAAAGCAG___CCTGCACCTGTGGCCTCATGGCGCATTCTCTACAATCAGTTGACAGAGG	HERC2P10	BRAF(2142),AC006006.1(7796)	ENSG00000259845	.	.	LH00166:186:2372Y3LT4:8:1419:2642:25395,LH00166:186:2372Y3LT4:8:1344:50584:22257,LH00166:186:2372Y3LT4:8:1364:7237:8188,LH00166:186:2372Y3LT4:8:2133:31823:8314,LH00166:186:2372Y3LT4:8:2211:50333:4307,LH00166:186:2372Y3LT4:8:2305:29372:17520	.	.	exon/splice-site	intergenic	4	1	+/+	./+	.	5	ENST00000570209	.	translocation	0.020202020202020204	0.5	0.2601010101010101																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	BRAF--HERC2P10	HERC2P10--BRAF	BRAF--HERC2P10	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr15	chr7	HERC2P10	BRAF	30836910	140903313	chr15:30836910-chr7:140903313	+,+	Arriba	1	1	2		3	PASS		HERC2P10--BRAF	BRAF--HERC2P10	confidence:medium;duplicates(2)	medium	translocation/5'-5'	exon/splice-site	intron	194	4	2.0	0.0	0.0	0.0									2	0		duplicates(2)		FAIL		False	chr15:30836910	chr7:140903313	chr15:30836910-chr7:140903313	.	.	medium	194	4	downstream	upstream	1	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(2)	CAAGAGCTTTG___AGTTTTACAGGTAGTGCTCTTGCTGCTTTGGTGAAAGGTCTTCCAGAAGCTTTGCAAAGGCAGTTTGAATATGAAGATCCTATTGTGAGGGGTGGCAAACAGCTGCTCCACAGCCCATTCTTTAAG___GTACTGGTAGCTCTTGCTTGTGACCTGGAGCTGGACACTCTGCCTTGCTGTGCCaAGACGCACAAGTGGGCCTGGTTCCaGAGGTACTGCATGGCCTCCCGCATTGCTGTGGCCCTTGACAAAAGAACACCATTGCCCCGTCTGTTTCTTGATGAG|GGCCTTTGGAATTCTGCAAAATTTACTGTCTGTGCTCTGTAAATGGAACAATGAAGCCTGGATGACAGCATATTCTTTTACAACATAGTTTGCTGAATATTTTAAGCCCACTGTTGAGACCCACCGCTCAGAAAAAAAGATTCCTTCTA	HERC2P10	BRAF	ENSG00000259845	ENSG00000157764	.	LH00166:186:2372Y3LT4:8:1251:47882:15587,LH00166:186:2372Y3LT4:8:1332:9988:18585,LH00166:186:2372Y3LT4:8:2324:41604:12784,LH00166:186:2372Y3LT4:8:2324:41612:12770,LH00166:186:2372Y3LT4:8:2324:48213:24877	.	.	exon/splice-site	intron	2	0	+/+	-/+	.	3	ENST00000570209	.	translocation/5'-5'	0.01272264631043257	0.1111111111111111	0.06191687871077184																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	BRAF--HERC2P2	BRAF--HERC2P2	BRAF--HERC2P2	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr7	chr15	BRAF	HERC2P2	140924566	22587344	chr7:140924566-chr15:22587344	-,+	Arriba	1	0	3		3	PASS	out-of-frame	BRAF--HERC2P2	BRAF--HERC2P2	confidence:medium;mismatches(1)	medium	translocation	CDS/splice-site	exon/splice-site	1966	198	0.0	1.0	0.0	0.0									1	2	False	mismatches(1)		FAIL		False	chr7:140924566	chr15:22587344	chr7:140924566-chr15:22587344	.	.	medium	1966	198	upstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	mismatches(1)	CGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAG|GCTTCAGCAGAAGAAACACTTCCTATAAATCTCGCCCAAACAGGAAAGGTAAGTGGCCTAAAATTTTTCTAGTATTTTCAAAATGACCCAGTTACAATAGGAAATTTCTTCTTGTACTATTGTCACTAATCCCG	BRAF	HERC2P2	ENSG00000157764	ENSG00000276550	LSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEE|asaeetlpinlaqtgkvsglkff*	LH00166:186:2372Y3LT4:8:1144:15991:6703,LH00166:186:2372Y3LT4:8:2430:12941:19636,LH00166:186:2372Y3LT4:8:2295:38109:25367,LH00166:186:2372Y3LT4:8:2444:26540:25311	out-of-frame	.	CDS/splice-site	exon/splice-site	1	2	-/-	+/+	.	3	ENST00000644969	ENST00000614571	translocation	0.0005083884087442806	0.01	0.00525419420437214																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	BRAF--TRBV10-2	BRAF--TRBV10-2	BRAF--TRBV10-2	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr7	chr7	BRAF	TRBV10-2	140924566	142427136	chr7:140924566-chr7:142427136	-,-	Arriba	1	0	4		4	PASS	out-of-frame	BRAF--TRBV10-2	BRAF--TRBV10-2	confidence:medium	medium	duplication	CDS/splice-site	intergenic	1966	1													3	1	False			FAIL		False	chr7:140924566	chr7:142427136	chr7:140924566-chr7:142427136	.	.	medium	1966	1	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(4.0<8.0)	.	GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAG|AACCTGGTGACATGCTCCCAGCCCTCCAAGTGCAAATGAGGCCAGGAAGCATAGAGGAGCCATGGGT	BRAF	TRBV10-2(1671),TRBV11-2(6759)	ENSG00000157764	.	GGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEE|nlvtcsqpskck*	LH00166:186:2372Y3LT4:8:1189:2901:29067,LH00166:186:2372Y3LT4:8:1295:14688:13667,LH00166:186:2372Y3LT4:8:1379:29121:26054,LH00166:186:2372Y3LT4:8:1218:10457:15895	out-of-frame	.	CDS/splice-site	intergenic	3	1	-/-	./-	.	4	ENST00000644969	.	duplication	0.0015236160487557136	0.5	0.25076180802437786																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	BRAF--TRBV12-1	BRAF--TRBV12-1	BRAF--TRBV12-1	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr7	chr7	BRAF	TRBV12-1	140924566	142424555	chr7:140924566-chr7:142424555	-,-	Arriba	1	0	17		17	PASS	out-of-frame	BRAF--TRBV12-1	BRAF--TRBV12-1	confidence:high;duplicates(4),mismatches(2)	high	duplication	CDS/splice-site	intergenic	1966	6	4.0	2.0	0.0	0.0									14	3	False	duplicates(4),mismatches(2)		PASS		False	chr7:140924566	chr7:142424555	chr7:140924566-chr7:142424555	.	.	high	1966	6	upstream	downstream	0		duplicates(4),mismatches(2)	GACAGCGGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAG|CCTACAGAGATACCCTTGGTTAAAAGAGTCAACTGACATCCAGAAAGGTTTCAAAGTTGTGGATTCAAGGTCTTTAACATTTGAAGTCTTGTTTCACACTGTAGCACCTCATTGCaCCT	BRAF	TRBV12-1(8889),TRBV10-2(410)	ENSG00000157764	.	MAALSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEE|pteiplvkrvn*	LH00166:186:2372Y3LT4:8:1141:18936:10514,LH00166:186:2372Y3LT4:8:1159:51918:21822,LH00166:186:2372Y3LT4:8:1208:27147:2597,LH00166:186:2372Y3LT4:8:1236:24728:2275,LH00166:186:2372Y3LT4:8:1294:25917:25858,LH00166:186:2372Y3LT4:8:1355:15934:2653,LH00166:186:2372Y3LT4:8:1445:21338:24092,LH00166:186:2372Y3LT4:8:1486:11258:23588,LH00166:186:2372Y3LT4:8:2143:15586:10851,LH00166:186:2372Y3LT4:8:2161:35585:17913,LH00166:186:2372Y3LT4:8:2221:4479:17927,LH00166:186:2372Y3LT4:8:2243:41126:9996,LH00166:186:2372Y3LT4:8:2253:1267:8272,LH00166:186:2372Y3LT4:8:2258:43108:21696,LH00166:186:2372Y3LT4:8:2345:47817:7796,LH00166:186:2372Y3LT4:8:2361:8815:20673,LH00166:186:2372Y3LT4:8:2370:19510:10725,LH00166:186:2372Y3LT4:8:2382:28635:17506,LH00166:186:2372Y3LT4:8:2413:47922:3382,LH00166:186:2372Y3LT4:8:1247:41757:5960,LH00166:186:2372Y3LT4:8:1270:11978:13485,LH00166:186:2372Y3LT4:8:2455:23070:12154,LH00166:186:2372Y3LT4:8:2458:49580:4153	out-of-frame	.	CDS/splice-site	intergenic	14	3	-/-	./-	.	17	ENST00000644969	.	duplication	0.007070707070707071	0.3333333333333333	0.1702020202020202																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	BRAF--TRBV7-1	BRAF--TRBV7-1	BRAF--TRBV7-1	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr7	chr7	BRAF	TRBV7-1	140924566	142335396	chr7:140924566-chr7:142335396	-,-	Arriba	1	0	35		35	PASS	out-of-frame	BRAF--TRBV7-1	BRAF--TRBV7-1	confidence:high;duplicates(6),mismappers(2),mismatches(4)	high	duplication	CDS/splice-site	intergenic	1966	16	6.0	4.0	2.0	0.0									25	10	False	duplicates(6),mismappers(2),mismatches(4)		PASS		False	chr7:140924566	chr7:142335396	chr7:140924566-chr7:142335396	.	.	high	1966	16	upstream	downstream	0		duplicates(6),mismappers(2),mismatches(4)	GGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAG|AATGGCACCTGTGCCCCATACCCACTGGAGACTGTGGAAATCTGGAGGGAGCAACCTTGGTGATTCTGCCCCAAGAGAAGGGATTCTCTGGAGCTCTGGACAACATCCTGGGACTAAGATGGA	BRAF	TRBV7-1(2695),TRBV4-2(10025)	ENSG00000157764	.	MAALSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEE|ngtcapypletveiwreqpw*	LH00166:186:2372Y3LT4:8:1126:31160:8258,LH00166:186:2372Y3LT4:8:1143:40479:8959,LH00166:186:2372Y3LT4:8:1145:8378:25493,LH00166:186:2372Y3LT4:8:1240:32931:27105,LH00166:186:2372Y3LT4:8:1268:8613:25479,LH00166:186:2372Y3LT4:8:1280:13159:18221,LH00166:186:2372Y3LT4:8:1280:37785:8104,LH00166:186:2372Y3LT4:8:1301:41329:23294,LH00166:186:2372Y3LT4:8:1315:30747:2079,LH00166:186:2372Y3LT4:8:1342:18571:7586,LH00166:186:2372Y3LT4:8:1428:13661:3144,LH00166:186:2372Y3LT4:8:1455:32009:28842,LH00166:186:2372Y3LT4:8:2108:27762:15909,LH00166:186:2372Y3LT4:8:2138:26686:29571,LH00166:186:2372Y3LT4:8:2176:39047:24415,LH00166:186:2372Y3LT4:8:2179:43424:27988,LH00166:186:2372Y3LT4:8:2196:13968:9309,LH00166:186:2372Y3LT4:8:2196:30124:10865,LH00166:186:2372Y3LT4:8:2197:50220:2149,LH00166:186:2372Y3LT4:8:2208:39007:18067,LH00166:186:2372Y3LT4:8:2218:11744:10640,LH00166:186:2372Y3LT4:8:2239:42089:8721,LH00166:186:2372Y3LT4:8:2280:36976:2051,LH00166:186:2372Y3LT4:8:2305:10926:20519,LH00166:186:2372Y3LT4:8:2305:32357:25578,LH00166:186:2372Y3LT4:8:2344:51999:13051,LH00166:186:2372Y3LT4:8:2356:37777:22691,LH00166:186:2372Y3LT4:8:2389:10166:22145,LH00166:186:2372Y3LT4:8:2389:10174:22159,LH00166:186:2372Y3LT4:8:2389:34290:11355,LH00166:186:2372Y3LT4:8:2422:45082:13149,LH00166:186:2372Y3LT4:8:2436:13887:23097,LH00166:186:2372Y3LT4:8:2447:6582:27567,LH00166:186:2372Y3LT4:8:2449:49152:5512,LH00166:186:2372Y3LT4:8:2487:42752:27834,LH00166:186:2372Y3LT4:8:1257:22293:4419,LH00166:186:2372Y3LT4:8:1354:25157:21570,LH00166:186:2372Y3LT4:8:1422:19122:4083,LH00166:186:2372Y3LT4:8:1461:24647:11860,LH00166:186:2372Y3LT4:8:1468:11695:6128,LH00166:186:2372Y3LT4:8:2160:20796:16820,LH00166:186:2372Y3LT4:8:2254:10465:7334,LH00166:186:2372Y3LT4:8:2266:17301:7376,LH00166:186:2372Y3LT4:8:2375:20068:29319,LH00166:186:2372Y3LT4:8:2376:15780:8861,LH00166:186:2372Y3LT4:8:2450:25747:18053,LH00166:186:2372Y3LT4:8:2453:29663:8300	out-of-frame	.	CDS/splice-site	intergenic	25	10	-/-	./-	.	35	ENST00000644969	.	duplication	0.012556504269211451	0.38461538461538464	0.19858594444229805																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	BRAF--TRBV9	BRAF--TRBV9	BRAF--TRBV9	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr7	chr7	BRAF	TRBV9	140924566	142399299	chr7:140924566-chr7:142399299	-,-	Arriba	1	0	8		8	PASS	out-of-frame	BRAF--TRBV9	BRAF--TRBV9	confidence:medium;duplicates(6),mismatches(1)	medium	duplication	CDS/splice-site	intergenic	1966	3	6.0	1.0	0.0	0.0									6	2	False	duplicates(6),mismatches(1)		FAIL		False	chr7:140924566	chr7:142399299	chr7:140924566-chr7:142399299	.	.	medium	1966	3	upstream	downstream	0	confidence_below_min(medium<high)	duplicates(6),mismatches(1)	GCTCTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAG|GTGAAGCCACAAACACTGCCCCATCTAAGTCCCCTGAGTGACTGTACTTCCTGTGAAGAAAAGAGGAGGCTCATTAGGAATATGGATGAAATGTTCACCAAGAACTACACCTACCTGGAGTCTCTAGGGTCACAGGAAAATCCTCTATTCCCA	BRAF	TRBV9(6887),TRBV10-1(561)	ENSG00000157764	.	MAALSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEE|vkpqtlphlsplsdctsceekrrlirnmdemftknytyleslgsqenplf	LH00166:186:2372Y3LT4:8:1119:38222:8581,LH00166:186:2372Y3LT4:8:1254:48771:5526,LH00166:186:2372Y3LT4:8:1255:30116:9674,LH00166:186:2372Y3LT4:8:1296:38845:27567,LH00166:186:2372Y3LT4:8:1331:18903:9449,LH00166:186:2372Y3LT4:8:2102:4770:9660,LH00166:186:2372Y3LT4:8:2128:6663:7446,LH00166:186:2372Y3LT4:8:2210:6922:11930,LH00166:186:2372Y3LT4:8:2285:17196:5820,LH00166:186:2372Y3LT4:8:2309:46312:13485,LH00166:186:2372Y3LT4:8:2321:39274:10234,LH00166:186:2372Y3LT4:8:2410:47461:12168,LH00166:186:2372Y3LT4:8:2464:22002:11369,LH00166:186:2372Y3LT4:8:1405:46490:3816,LH00166:186:2372Y3LT4:8:2423:14688:14536	out-of-frame	.	CDS/splice-site	intergenic	6	2	-/-	./-	.	8	ENST00000644969	.	duplication	0.0030425963488843813	0.4	0.2015212981744422																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	ESR1--LINC02527	ESR1--LINC02527	ESR1--LINC02527	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	ESR1	LINC02527	152061124	111986594	chr6:152061124-chr6:111986594	+,-	Arriba	1	8	17		25	PASS	out-of-frame	ESR1--LINC02527	ESR1--LINC02527	confidence:high;duplicates(18),low_entropy(1),mismappers(1)	high	inversion	CDS/splice-site	intergenic	912	3	18.0	0.0	1.0	0.0									14	3	False	duplicates(18),low_entropy(1),mismappers(1)		PASS		False	chr6:152061124	chr6:111986594	chr6:152061124-chr6:111986594	.	.	high	912	3	downstream	downstream	8		duplicates(18),low_entropy(1),mismappers(1)	GCTTTGTGGATTTGACCCTCCATGATCAGGTCCACCTTCTAGAATGTGCCTGGCTAGAGATCCTGATGATTGGTCTCGTCTGGCGCTCCATGGAGCACCCAGGGAAGCTACTGTTTGCTCCTAACTTGCTCTTGGACAG___GAACCAGGGAAAATGTGTAGAGGGCATGGTGGAGATCTTCGACATGCTGCTGGCTACATCATCTCGGTTCCGCATGATGAATCTGCAGGGAGAGGAGTTTGTGTGCCTCAAATCTATTATTTTGCTTAATTCTG|CTAACATAAGAAGTAAAATGATCATAACAGTCCCCTAAGGAAGAAAAATGTCCATCATTGTTTTGAACTGAAGAATCACACCCAGTGAAAAACACCAGGTTCAGGCTTTGGGTAACCTTGATGAAGAACCAGAACAAATCAATTTGGCTTTCAGCACATTAATAAAGTGGCAG	ESR1	LINC02527(77174),CCN6(67481)	ENSG00000091831	.	FVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNS|anirskmiitvp*	LH00166:186:2372Y3LT4:8:2225:42688:12504,LH00166:186:2372Y3LT4:8:2272:40220:22579,LH00166:186:2372Y3LT4:8:2492:5781:17380,LH00166:186:2372Y3LT4:8:1255:9907:25900,LH00166:186:2372Y3LT4:8:1255:9923:25900,LH00166:186:2372Y3LT4:8:1278:20958:9225,LH00166:186:2372Y3LT4:8:1288:27220:24555,LH00166:186:2372Y3LT4:8:1291:2424:17647,LH00166:186:2372Y3LT4:8:1402:30011:18039,LH00166:186:2372Y3LT4:8:1403:21799:24471,LH00166:186:2372Y3LT4:8:1430:17576:25143,LH00166:186:2372Y3LT4:8:1459:6517:25634,LH00166:186:2372Y3LT4:8:1492:8103:7754,LH00166:186:2372Y3LT4:8:2113:52072:4825,LH00166:186:2372Y3LT4:8:2135:36596:11341,LH00166:186:2372Y3LT4:8:2161:35569:25227,LH00166:186:2372Y3LT4:8:2161:35585:25227,LH00166:186:2372Y3LT4:8:2185:15675:10837,LH00166:186:2372Y3LT4:8:2236:24445:19412,LH00166:186:2372Y3LT4:8:2256:45948:13611,LH00166:186:2372Y3LT4:8:2281:46425:27609,LH00166:186:2372Y3LT4:8:2298:30545:9183,LH00166:186:2372Y3LT4:8:2351:17520:25325,LH00166:186:2372Y3LT4:8:2366:29663:5302,LH00166:186:2372Y3LT4:8:2366:29671:5288,LH00166:186:2372Y3LT4:8:2366:29679:5274,LH00166:186:2372Y3LT4:8:2367:47590:19762,LH00166:186:2372Y3LT4:8:2449:8564:4573,LH00166:186:2372Y3LT4:8:2475:16250:5666,LH00166:186:2372Y3LT4:8:2479:5037:9477,LH00166:186:2372Y3LT4:8:2479:5045:9463,LH00166:186:2372Y3LT4:8:1125:21363:26657,LH00166:186:2372Y3LT4:8:1176:22131:29669,LH00166:186:2372Y3LT4:8:1176:22139:29655,LH00166:186:2372Y3LT4:8:1416:6307:24008,LH00166:186:2372Y3LT4:8:2136:39371:8917,LH00166:186:2372Y3LT4:8:2137:21775:9351,LH00166:186:2372Y3LT4:8:2137:21791:9351,LH00166:186:2372Y3LT4:8:2250:3953:4293,LH00166:186:2372Y3LT4:8:2250:3961:4279,LH00166:186:2372Y3LT4:8:2250:3977:4279,LH00166:186:2372Y3LT4:8:2285:42283:15923,LH00166:186:2372Y3LT4:8:2398:42437:6829,LH00166:186:2372Y3LT4:8:2435:16088:21248,LH00166:186:2372Y3LT4:8:2435:16096:21234	out-of-frame	Ligand-binding_domain_of_nuclear_hormone_receptor(69%),Oestrogen_receptor(100%),Zinc_finger__C4_type_(two_domains)(100%)|	CDS/splice-site	intergenic	14	3	+/+	./-	.	25	ENST00000440973	.	inversion	0.01935483870967742	0.7	0.3596774193548387																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	ESR1--LINC02527	ESR1--LINC02527	ESR1--LINC02527	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	LINC02527	ESR1	111938630	152060991	chr6:111938630-chr6:152060991	-,+	Arriba	1	0	1		1	PASS		LINC02527--ESR1	ESR1--LINC02527	confidence:low	low	inversion	intergenic	CDS/splice-site	1	1101													1	0				FAIL		False	chr6:111938630	chr6:152060991	chr6:111938630-chr6:152060991	.	.	low	1	1101	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCACCGTCTTAGGAGCAGATTCTTCCAGCTCCAGTCGAGCCTTCAGATGACTGCAATCCTGGCCAACATGCTGACTGtAACCTCCTGAGAGATCCTGAACCAGAACCACCCAGCCCAGCTAAACTGCTCCTGGATTCCTGCTCTATAGAAACAGT|GAACCAGGGAAAATGTGTAGAGGGCATGGTGGAGATCTTCGACATGCTGCTGGCTACATCATCTCGGTTCCGCATGATGAATCTGCA	LINC02527(29210),CCN6(115445)	ESR1	.	ENSG00000091831	.	LH00166:186:2372Y3LT4:8:2112:26435:12630	.	|Ligand-binding_domain_of_nuclear_hormone_receptor(67%),Oestrogen-type_nuclear_receptor_final_C-terminal_(100%),Oestrogen_receptor(0%)	intergenic	CDS/splice-site	1	0	./-	+/+	.	1	.	ENST00000440973	inversion	0.5	0.0	0.25																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	ESR1--LINC02527	ESR1--LINC02527	ESR1--LINC02527	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	ESR1	LINC02527	152061124	111901850	chr6:152061124-chr6:111901850	+,-	STAR-Fusion	1	0	2	0.0257	2	FAIL		ESR1--LINC02527	ESR1--LINC02527	"[""INTRACHROMOSOMAL[chr6:39.75Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.6049	False	False	False	GT	AG	2			Read count too low: 2 < 8																																									0	.	.	.	.	0.0257	FAIL	.	.	.	ESR1--LINC02527	2	LH00166:186:2372Y3LT4:8:2102:2327:11201,LH00166:186:2372Y3LT4:8:2483:23814:22579	YES_LDAS	GT	1.6049	chr6:152061124:+	ESR1^ENSG00000091831.24	.	.	.	AG	1.9656	chr6:111901850:-	LINC02527^ENSG00000227012.3	0	.	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr6:39.75Mb]""]"		False	chr6:152061124-chr6:111901850	2.0	0.0	Read count too low: 2 < 8	2	659_cX2	STAR-Fusion
fp_audit	659_cX2	fusion	IRAK3--ROS1	ROS1--IRAK3	IRAK3--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr12	ROS1	IRAK3	117324332	66203711	chr6:117324332-chr12:66203711	-,+	Arriba	1	0	3		3	PASS	in-frame	ROS1--IRAK3	IRAK3--ROS1	confidence:low;duplicates(1)	low	translocation	CDS/splice-site	CDS/splice-site	63	14287	1.0	0.0	0.0	0.0									0	3	True	duplicates(1)		FAIL		False	chr6:117324332	chr12:66203711	chr6:117324332-chr12:66203711	.	.	low	63	14287	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(3.0<8.0)	duplicates(1)	GATGATTTTTGGATACCAGAAACAAGTTTCATACTTACTATTATAGTTGGAATATTTCTGGTTGTTACAATCCCACTGACCTTTG|CAGAGAGACTTTCAAGCAGCTGGCTGGATGTTCGTCATATTGAAAAGTATGTAGACCAAGGTAAAAGTGGAACAAGAGAATTACTTTGGTCCTGGGCACAGAAAAACAAGACCATCGGTGACCTTTTACAGGTCCTCCAGGAGATGGGACATCGTCGAGCTATTCATTTAATTACAAACTATG___GAGCAGTGTTGAGTCCTTCAGAGAAGAGTTATCAGGAAGGTGGATTTCCAAATATATTATTCAAG___GAAACAGCCAATGTCACCGTGGATAATGTTCTTATTCCTGAACATAATGAAAAAG___GAgTACTGCTTAAATCTTCCATCAGCTTTCAAAATATCATAGAAGGAACTAGAAATTTCCACAAAGACTTCCTAATTGGAGAAGGAGAGATTTTTGAG	ROS1	IRAK3	ENSG00000047936	ENSG00000090376	DDFWIPETSFILTIIVGIFLVVTIPLTF|aERLSSSWLDVRHIEKYVDQGKSGTRELLWSWAQKNKTIGDLLQVLQEMGHRRAIHLITNYGAVLSPSEKSYQEGGFPNILFKETANVTVDNVLIPEHNEKGvLLKSSISFQNIIEGTRNFHKDFLIGEGEIF	LH00166:186:2372Y3LT4:8:1110:28983:7432,LH00166:186:2372Y3LT4:8:1133:42186:9001,LH00166:186:2372Y3LT4:8:2283:26993:3508,LH00166:186:2372Y3LT4:8:2297:7650:3130	in-frame	Fibronectin_type_III_domain(100%)|Death_domain(76%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	0	3	-/-	+/+	.	3	ENST00000368507	ENST00000261233	translocation	0.0	0.0002099370188943317	0.00010496850944716585																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	IRAK3--ROS1	ROS1--IRAK3	IRAK3--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr12	ROS1	IRAK3	117329329	66203711	chr6:117329329-chr12:66203711	-,+	Arriba	1	0	1		1	PASS	out-of-frame	ROS1--IRAK3	IRAK3--ROS1	confidence:low	low	translocation	CDS/splice-site	CDS/splice-site	267	14287													1	0	False			FAIL		False	chr6:117329329	chr12:66203711	chr6:117329329-chr12:66203711	.	.	low	267	14287	upstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	CCAAATAAACCAGGCATTCCCAAATTACTAGAAGGGAGTAAAAATTCAATACAGTGGGAGAAAGCTGAAGATAATGGATGTAGAATTACATACTATATCCTTGAGATAAG|CAGAGAGACTTTCAAGCAGCTGGCTGGATGTTCGTCATATTGAAAAGTATGTAGACCAAGGTAAAAGTGGAACAAGAG	ROS1	IRAK3	ENSG00000047936	ENSG00000090376	PNKPGIPKLLEGSKNSIQWEKAEDNGCRITYYILEIs|retfkqlagcssy*	LH00166:186:2372Y3LT4:8:2311:20181:29179	out-of-frame	Fibronectin_type_III_domain(100%)|Death_domain(76%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	-/-	+/+	.	1	ENST00000368507	ENST00000261233	translocation	0.0037313432835820895	0.0	0.0018656716417910447																																						659_cX2	Arriba
fp_audit	659_cX2	fusion	ROS1--TMBIM4	TMBIM4--ROS1	ROS1--TMBIM4	FP	FP		Arriba		cgp_rna_exp0034	659_cX2	altera_exact	1023	clinical	patient	Sarcoma	Sarcoma				62	unknown			False	659_cX2_T1_TRNA_1	tRNA	altera_exact	ssf		356.00		89.69						False		cgp_rna_exp0034_lib_s01	200.00		117.97	cgp_rna_exp0034	A01		False		659_cX2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_cX2_T1_TRNA_1_B2372Y3LT4_1	BND	chr12	chr6	TMBIM4	ROS1	66169855	117329520	chr12:66169855-chr6:117329520	-,+	Arriba	1	3	206		209	PASS	out-of-frame	TMBIM4--ROS1	ROS1--TMBIM4	confidence:medium;duplicates(52),mismatches(7),multimappers(1)	medium	translocation/5'-5'	CDS/splice-site	intron	49419	129	52.0	7.0	0.0	1.0									161	45	False	duplicates(52),mismatches(7),multimappers(1)		FAIL		False	chr12:66169855	chr6:117329520	chr12:66169855-chr6:117329520	.	.	medium	49419	129	upstream	upstream	3	confidence_below_min(medium<high)	duplicates(52),mismatches(7),multimappers(1)	GGCGGTTGCGGTTAGTGGACCGGGACCGGTAGGGGTGCTGTTGCCATCATGGCTGACCCCGACCCCCGGTACCCTCGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGGCCTCCGCCACCGTGCACATCCGAATGG|AATATATTAAGAGGAAAGACAACATTAAAGAAATATTCAGAGGCGGGGCCAAGATGGCCGACTAGAAGCAACTCCGTTCAGAGGTTCCTATTGAAAAAAACCATAATAAGTGTGTGAGTCCTTCACCGGCA	TMBIM4	ROS1	ENSG00000155957	ENSG00000047936	MADPDPRYPRSSIEDDFNYGSSVASATVHIRM|eyikrkdnikeifrggakmad*	LH00166:186:2372Y3LT4:8:1168:14882:12938,LH00166:186:2372Y3LT4:8:1197:40641:20645,LH00166:186:2372Y3LT4:8:1198:43173:2331,LH00166:186:2372Y3LT4:8:1202:33295:15433,LH00166:186:2372Y3LT4:8:1247:40398:9576,LH00166:186:2372Y3LT4:8:1277:40050:6731,LH00166:186:2372Y3LT4:8:1279:48246:17535,LH00166:186:2372Y3LT4:8:1296:32098:25465,LH00166:186:2372Y3LT4:8:1298:6655:26012,LH00166:186:2372Y3LT4:8:1301:44055:18936,LH00166:186:2372Y3LT4:8:1310:7804:16007,LH00166:186:2372Y3LT4:8:1321:9276:15727,LH00166:186:2372Y3LT4:8:1350:25205:27315,LH00166:186:2372Y3LT4:8:1353:30650:21360,LH00166:186:2372Y3LT4:8:1355:41943:23209,LH00166:186:2372Y3LT4:8:1368:31030:11173,LH00166:186:2372Y3LT4:8:1369:42397:22285,LH00166:186:2372Y3LT4:8:1382:45624:8427,LH00166:186:2372Y3LT4:8:1394:35334:14368,LH00166:186:2372Y3LT4:8:1428:20092:19804,LH00166:186:2372Y3LT4:8:1457:35577:8230,LH00166:186:2372Y3LT4:8:1485:5903:2205,LH00166:186:2372Y3LT4:8:2138:41968:14872,LH00166:186:2372Y3LT4:8:2175:21233:13065,LH00166:186:2372Y3LT4:8:2177:33740:18669,LH00166:186:2372Y3LT4:8:2204:1235:17268,LH00166:186:2372Y3LT4:8:2251:18766:27399,LH00166:186:2372Y3LT4:8:2259:46846:29739,LH00166:186:2372Y3LT4:8:2259:46862:29739,LH00166:186:2372Y3LT4:8:2275:41620:9505,LH00166:186:2372Y3LT4:8:2279:2990:3578,LH00166:186:2372Y3LT4:8:2291:15659:2401,LH00166:186:2372Y3LT4:8:2291:46498:7530,LH00166:186:2372Y3LT4:8:2310:24979:20841,LH00166:186:2372Y3LT4:8:2312:42817:6114,LH00166:186:2372Y3LT4:8:2339:12277:22635,LH00166:186:2372Y3LT4:8:2349:45139:27679,LH00166:186:2372Y3LT4:8:2350:34865:7894,LH00166:186:2372Y3LT4:8:2377:42041:26208,LH00166:186:2372Y3LT4:8:2378:31111:24373,LH00166:186:2372Y3LT4:8:2398:5320:27483,LH00166:186:2372Y3LT4:8:2398:5328:27497,LH00166:186:2372Y3LT4:8:2405:43739:13765,LH00166:186:2372Y3LT4:8:2418:32721:8749,LH00166:186:2372Y3LT4:8:2440:32891:20897,LH00166:186:2372Y3LT4:8:2445:22778:11397,LH00166:186:2372Y3LT4:8:2476:8726:16624,LH00166:186:2372Y3LT4:8:2482:47315:3957,LH00166:186:2372Y3LT4:8:2487:33813:9744,LH00166:186:2372Y3LT4:8:1106:11671:10823,LH00166:186:2372Y3LT4:8:1106:18127:29627,LH00166:186:2372Y3LT4:8:1106:24623:23448,LH00166:186:2372Y3LT4:8:1106:24623:23448,LH00166:186:2372Y3LT4:8:1106:24631:23462,LH00166:186:2372Y3LT4:8:1106:24631:23462,LH00166:186:2372Y3LT4:8:1111:22584:20001,LH00166:186:2372Y3LT4:8:1111:26872:24036,LH00166:186:2372Y3LT4:8:1123:12747:13079,LH00166:186:2372Y3LT4:8:1123:12763:13079,LH00166:186:2372Y3LT4:8:1126:27988:20925,LH00166:186:2372Y3LT4:8:1128:32324:18151,LH00166:186:2372Y3LT4:8:1130:45115:15867,LH00166:186:2372Y3LT4:8:1130:7148:12070,LH00166:186:2372Y3LT4:8:1138:14980:29697,LH00166:186:2372Y3LT4:8:1138:4309:19875,LH00166:186:2372Y3LT4:8:1138:4317:19861,LH00166:186:2372Y3LT4:8:1147:38311:23027,LH00166:186:2372Y3LT4:8:1151:27980:13177,LH00166:186:2372Y3LT4:8:1152:35399:8959,LH00166:186:2372Y3LT4:8:1153:42421:23560,LH00166:186:2372Y3LT4:8:1153:42437:23560,LH00166:186:2372Y3LT4:8:1156:17285:14886,LH00166:186:2372Y3LT4:8:1158:31969:19468,LH00166:186:2372Y3LT4:8:1163:13329:12658,LH00166:186:2372Y3LT4:8:1164:26354:24793,LH00166:186:2372Y3LT4:8:1167:18960:28156,LH00166:186:2372Y3LT4:8:1169:26702:26993,LH00166:186:2372Y3LT4:8:1169:26710:26979,LH00166:186:2372Y3LT4:8:1169:34565:26320,LH00166:186:2372Y3LT4:8:1177:30448:24569,LH00166:186:2372Y3LT4:8:1178:23806:5834,LH00166:186:2372Y3LT4:8:1185:23070:13947,LH00166:186:2372Y3LT4:8:1186:12852:19819,LH00166:186:2372Y3LT4:8:1188:24542:18459,LH00166:186:2372Y3LT4:8:1198:43173:15503,LH00166:186:2372Y3LT4:8:1205:39428:14928,LH00166:186:2372Y3LT4:8:1207:32155:15895,LH00166:186:2372Y3LT4:8:1209:16873:1869,LH00166:186:2372Y3LT4:8:1213:20214:28310,LH00166:186:2372Y3LT4:8:1215:46603:18333,LH00166:186:2372Y3LT4:8:1221:12229:27679,LH00166:186:2372Y3LT4:8:1223:5498:18039,LH00166:186:2372Y3LT4:8:1227:6226:13975,LH00166:186:2372Y3LT4:8:1238:15327:3704,LH00166:186:2372Y3LT4:8:1239:25480:7109,LH00166:186:2372Y3LT4:8:1240:41992:1462,LH00166:186:2372Y3LT4:8:1245:27899:6731,LH00166:186:2372Y3LT4:8:1246:10401:6885,LH00166:186:2372Y3LT4:8:1253:38869:17520,LH00166:186:2372Y3LT4:8:1261:14559:7810,LH00166:186:2372Y3LT4:8:1263:23676:29207,LH00166:186:2372Y3LT4:8:1270:20537:25704,LH00166:186:2372Y3LT4:8:1274:13313:24905,LH00166:186:2372Y3LT4:8:1275:33789:22537,LH00166:186:2372Y3LT4:8:1279:3451:29543,LH00166:186:2372Y3LT4:8:1284:43578:22817,LH00166:186:2372Y3LT4:8:1286:43804:19847,LH00166:186:2372Y3LT4:8:1291:34638:21934,LH00166:186:2372Y3LT4:8:1293:17771:14522,LH00166:186:2372Y3LT4:8:1302:42558:13625,LH00166:186:2372Y3LT4:8:1303:38934:19370,LH00166:186:2372Y3LT4:8:1304:7051:28408,LH00166:186:2372Y3LT4:8:1305:34080:8300,LH00166:186:2372Y3LT4:8:1312:15619:1434,LH00166:186:2372Y3LT4:8:1314:28983:12840,LH00166:186:2372Y3LT4:8:1315:11379:19987,LH00166:186:2372Y3LT4:8:1328:10716:20631,LH00166:186:2372Y3LT4:8:1329:28506:4755,LH00166:186:2372Y3LT4:8:1335:14802:4279,LH00166:186:2372Y3LT4:8:1337:17067:25185,LH00166:186:2372Y3LT4:8:1338:28271:23602,LH00166:186:2372Y3LT4:8:1342:24453:21892,LH00166:186:2372Y3LT4:8:1343:21718:3844,LH00166:186:2372Y3LT4:8:1352:7618:7390,LH00166:186:2372Y3LT4:8:1353:32664:2037,LH00166:186:2372Y3LT4:8:1366:35836:18627,LH00166:186:2372Y3LT4:8:1367:28247:21878,LH00166:186:2372Y3LT4:8:1373:16800:25928,LH00166:186:2372Y3LT4:8:1382:20610:6493,LH00166:186:2372Y3LT4:8:1384:38691:18305,LH00166:186:2372Y3LT4:8:1386:18224:11271,LH00166:186:2372Y3LT4:8:1389:40754:14200,LH00166:186:2372Y3LT4:8:1390:46385:5680,LH00166:186:2372Y3LT4:8:1391:26896:13709,LH00166:186:2372Y3LT4:8:1393:48593:6815,LH00166:186:2372Y3LT4:8:1401:3006:1645,LH00166:186:2372Y3LT4:8:1403:41013:4783,LH00166:186:2372Y3LT4:8:1405:35763:22201,LH00166:186:2372Y3LT4:8:1408:28830:8651,LH00166:186:2372Y3LT4:8:1414:37243:6269,LH00166:186:2372Y3LT4:8:1419:23539:24737,LH00166:186:2372Y3LT4:8:1419:5183:15895,LH00166:186:2372Y3LT4:8:1425:14332:3971,LH00166:186:2372Y3LT4:8:1435:9648:29291,LH00166:186:2372Y3LT4:8:1438:26742:7754,LH00166:186:2372Y3LT4:8:1439:29242:11495,LH00166:186:2372Y3LT4:8:1441:36062:12378,LH00166:186:2372Y3LT4:8:1444:18952:5722,LH00166:186:2372Y3LT4:8:1447:27624:10262,LH00166:186:2372Y3LT4:8:1450:51312:13401,LH00166:186:2372Y3LT4:8:1472:6962:14186,LH00166:186:2372Y3LT4:8:1472:6970:14200,LH00166:186:2372Y3LT4:8:1473:32211:11173,LH00166:186:2372Y3LT4:8:1477:37235:8441,LH00166:186:2372Y3LT4:8:1477:37243:8455,LH00166:186:2372Y3LT4:8:1479:23175:25928,LH00166:186:2372Y3LT4:8:1482:5716:20155,LH00166:186:2372Y3LT4:8:1487:5951:11005,LH00166:186:2372Y3LT4:8:1487:5959:10991,LH00166:186:2372Y3LT4:8:1495:44144:21612,LH00166:186:2372Y3LT4:8:1496:20723:2457,LH00166:186:2372Y3LT4:8:2101:31766:7376,LH00166:186:2372Y3LT4:8:2103:25286:13611,LH00166:186:2372Y3LT4:8:2105:38319:25564,LH00166:186:2372Y3LT4:8:2107:48092:8581,LH00166:186:2372Y3LT4:8:2113:14793:10711,LH00166:186:2372Y3LT4:8:2123:38829:17058,LH00166:186:2372Y3LT4:8:2130:10304:12770,LH00166:186:2372Y3LT4:8:2138:4341:21640,LH00166:186:2372Y3LT4:8:2141:25602:4517,LH00166:186:2372Y3LT4:8:2148:22972:16974,LH00166:186:2372Y3LT4:8:2148:43942:20589,LH00166:186:2372Y3LT4:8:2150:7529:13849,LH00166:186:2372Y3LT4:8:2157:8354:15335,LH00166:186:2372Y3LT4:8:2159:44840:6395,LH00166:186:2372Y3LT4:8:2160:45786:21654,LH00166:186:2372Y3LT4:8:2162:42178:25437,LH00166:186:2372Y3LT4:8:2166:8742:24919,LH00166:186:2372Y3LT4:8:2167:44322:2808,LH00166:186:2372Y3LT4:8:2169:48545:5638,LH00166:186:2372Y3LT4:8:2171:27058:23854,LH00166:186:2372Y3LT4:8:2175:38481:2135,LH00166:186:2372Y3LT4:8:2180:10069:16652,LH00166:186:2372Y3LT4:8:2180:37882:6507,LH00166:186:2372Y3LT4:8:2181:15271:12854,LH00166:186:2372Y3LT4:8:2181:25513:13835,LH00166:186:2372Y3LT4:8:2182:17487:7866,LH00166:186:2372Y3LT4:8:2184:23506:22999,LH00166:186:2372Y3LT4:8:2185:10805:19664,LH00166:186:2372Y3LT4:8:2185:11598:13891,LH00166:186:2372Y3LT4:8:2188:32502:24961,LH00166:186:2372Y3LT4:8:2190:32632:1673,LH00166:186:2372Y3LT4:8:2194:34428:17310,LH00166:186:2372Y3LT4:8:2201:20537:4377,LH00166:186:2372Y3LT4:8:2203:4268:9155,LH00166:186:2372Y3LT4:8:2217:23547:25620,LH00166:186:2372Y3LT4:8:2223:2723:27834,LH00166:186:2372Y3LT4:8:2225:22066:26614,LH00166:186:2372Y3LT4:8:2230:13774:11579,LH00166:186:2372Y3LT4:8:2232:34266:28408,LH00166:186:2372Y3LT4:8:2233:34153:24765,LH00166:186:2372Y3LT4:8:2235:30715:1855,LH00166:186:2372Y3LT4:8:2240:17698:6577,LH00166:186:2372Y3LT4:8:2240:17714:6577,LH00166:186:2372Y3LT4:8:2240:6461:26628,LH00166:186:2372Y3LT4:8:2252:35383:22719,LH00166:186:2372Y3LT4:8:2255:37551:15096,LH00166:186:2372Y3LT4:8:2258:32284:1575,LH00166:186:2372Y3LT4:8:2260:46959:3284,LH00166:186:2372Y3LT4:8:2275:12933:12196,LH00166:186:2372Y3LT4:8:2286:44063:5918,LH00166:186:2372Y3LT4:8:2290:12512:29683,LH00166:186:2372Y3LT4:8:2291:50114:23350,LH00166:186:2372Y3LT4:8:2293:13871:19482,LH00166:186:2372Y3LT4:8:2309:30957:27245,LH00166:186:2372Y3LT4:8:2310:24768:21262,LH00166:186:2372Y3LT4:8:2316:30084:21080,LH00166:186:2372Y3LT4:8:2324:46191:1420,LH00166:186:2372Y3LT4:8:2327:32130:1673,LH00166:186:2372Y3LT4:8:2332:19267:26558,LH00166:186:2372Y3LT4:8:2340:47938:6521,LH00166:186:2372Y3LT4:8:2342:23595:19566,LH00166:186:2372Y3LT4:8:2345:1348:10234,LH00166:186:2372Y3LT4:8:2356:23207:2639,LH00166:186:2372Y3LT4:8:2360:39241:10094,LH00166:186:2372Y3LT4:8:2364:39848:4643,LH00166:186:2372Y3LT4:8:2365:3435:8104,LH00166:186:2372Y3LT4:8:2375:33117:9463,LH00166:186:2372Y3LT4:8:2380:33295:14536,LH00166:186:2372Y3LT4:8:2382:22034:6969,LH00166:186:2372Y3LT4:8:2382:29533:15110,LH00166:186:2372Y3LT4:8:2383:2497:18529,LH00166:186:2372Y3LT4:8:2386:49912:8847,LH00166:186:2372Y3LT4:8:2397:41207:17759,LH00166:186:2372Y3LT4:8:2402:32211:6941,LH00166:186:2372Y3LT4:8:2414:3055:21178,LH00166:186:2372Y3LT4:8:2416:40536:10234,LH00166:186:2372Y3LT4:8:2417:23320:1210,LH00166:186:2372Y3LT4:8:2423:22333:11579,LH00166:186:2372Y3LT4:8:2424:21581:18459,LH00166:186:2372Y3LT4:8:2426:30084:23686,LH00166:186:2372Y3LT4:8:2426:44006:23784,LH00166:186:2372Y3LT4:8:2432:48100:3915,LH00166:186:2372Y3LT4:8:2435:17673:5918,LH00166:186:2372Y3LT4:8:2436:11121:8777,LH00166:186:2372Y3LT4:8:2437:7723:9926,LH00166:186:2372Y3LT4:8:2442:51773:15853,LH00166:186:2372Y3LT4:8:2445:36920:5176,LH00166:186:2372Y3LT4:8:2445:51838:19048,LH00166:186:2372Y3LT4:8:2448:16088:9169,LH00166:186:2372Y3LT4:8:2449:17002:13527,LH00166:186:2372Y3LT4:8:2454:12981:2527,LH00166:186:2372Y3LT4:8:2457:22350:6002,LH00166:186:2372Y3LT4:8:2467:39735:20982,LH00166:186:2372Y3LT4:8:2470:18952:13373,LH00166:186:2372Y3LT4:8:2470:4641:11285,LH00166:186:2372Y3LT4:8:2473:21896:28422,LH00166:186:2372Y3LT4:8:2473:3872:1546,LH00166:186:2372Y3LT4:8:2478:21371:3830,LH00166:186:2372Y3LT4:8:2483:29121:15236,LH00166:186:2372Y3LT4:8:2485:44484:27918,LH00166:186:2372Y3LT4:8:2486:45010:7165,LH00166:186:2372Y3LT4:8:2486:45026:7165,LH00166:186:2372Y3LT4:8:2493:27195:4699,LH00166:186:2372Y3LT4:8:2495:11776:22523,LH00166:186:2372Y3LT4:8:2497:30164:26657,LH00166:186:2372Y3LT4:8:1196:29355:7039,LH00166:186:2372Y3LT4:8:2137:26508:8945,LH00166:186:2372Y3LT4:8:2446:32826:22775	out-of-frame	Inhibitor_of_apoptosis-promoting_Bax1(0%)|	CDS/splice-site	intron	161	45	-/-	-/+	.	209	ENST00000633367	.	translocation/5'-5'	0.003277432106733358	0.26495726495726496	0.13411734853199916																																						659_cX2	Arriba
fp_audit	659_dDe	fusion	NOTCH2--RNU6-465P	NOTCH2--RNU6-465P	NOTCH2--RNU6-465P	FP	FP		Arriba		cgp_rna_exp0034	659_dDe	altera_exact	1023	clinical	patient	Lung	Lung				82	unknown			False	659_dDe_T1_TRNA_1	tRNA	altera_exact	ssf		7.00		77.37						False		cgp_rna_exp0034_lib_s16	200.00		46.69	cgp_rna_exp0034	H02		False		659_dDe_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_dDe_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr1	NOTCH2	RNU6-465P	119986960	120143105	chr1:119986960-chr1:120143105	-,-	Arriba	1	8	146		154	PASS	out-of-frame	NOTCH2--RNU6-465P	NOTCH2--RNU6-465P	confidence:high;duplicates(337),mismatches(1)	high	duplication	CDS/splice-site	intergenic	10352	247	337.0	1.0	0.0	0.0									72	74	False	duplicates(337),mismatches(1)		PASS		False	chr1:119986960	chr1:120143105	chr1:119986960-chr1:120143105	.	.	high	10352	247	upstream	downstream	8		duplicates(337),mismatches(1)	CTGGTGACTTCACTTTTGAGTGCAACTGCCTTCCAG___GTTTTGAAGGGAGCACCTGTGAGAGGAATATTGATGACTGCCCTAACCACAGGTGTCAGAATGGAGGGGTTTGTGTGGATGGGGTCAACACTTACAACTGCCGCTGTCCCCCACAATGGACAG|ATGGATCCAGTTTGCATGCAGTGGTAGCTGCTGTGAGGCTGCGGTTAAATAGAGCTGCTCAGACTGCAACAGGAAAGCATTGAATCGAAAGCAAAGGGGAGGAAGCGCAAACCGATACCCACCACAAAGCTGCTGAGTGCCCA	NOTCH2	RNU6-465P(16031),SEC22B(7793)	ENSG00000134250	.	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304,LH00166:186:2372Y3LT4:8:2155:8750:12210,LH00166:186:2372Y3LT4:8:2160:34347:18011,LH00166:186:2372Y3LT4:8:2169:43950:16792,LH00166:186:2372Y3LT4:8:2173:31224:21458,LH00166:186:2372Y3LT4:8:2176:9729:18445,LH00166:186:2372Y3LT4:8:2178:47097:27960,LH00166:186:2372Y3LT4:8:2178:51037:15335,LH00166:186:2372Y3LT4:8:2185:47873:20001,LH00166:186:2372Y3LT4:8:2208:13159:9870,LH00166:186:2372Y3LT4:8:2215:12116:5848,LH00166:186:2372Y3LT4:8:2216:3872:18137,LH00166:186:2372Y3LT4:8:2218:13936:13653,LH00166:186:2372Y3LT4:8:2218:13944:13667,LH00166:186:2372Y3LT4:8:2221:50309:16400,LH00166:186:2372Y3LT4:8:2222:15991:16400,LH00166:186:2372Y3LT4:8:2225:20052:22088,LH00166:186:2372Y3LT4:8:2230:48472:29389,LH00166:186:2372Y3LT4:8:2231:13078:9421,LH00166:186:2372Y3LT4:8:2238:39872:15194,LH00166:186:2372Y3LT4:8:2239:23506:21402,LH00166:186:2372Y3LT4:8:2242:25909:23826,LH00166:186:2372Y3LT4:8:2243:16177:14816,LH00166:186:2372Y3LT4:8:2247:44783:6913,LH00166:186:2372Y3LT4:8:2251:31459:4629,LH00166:186:2372Y3LT4:8:2251:31467:4643,LH00166:186:2372Y3LT4:8:2251:31475:4657,LH00166:186:2372Y3LT4:8:2252:33967:2303,LH00166:186:2372Y3LT4:8:2253:6841:19776,LH00166:186:2372Y3LT4:8:2256:29105:28100,LH00166:186:2372Y3LT4:8:2258:16242:18768,LH00166:186:2372Y3LT4:8:2260:22576:18866,LH00166:186:2372Y3LT4:8:2274:41523:25900,LH00166:186:2372Y3LT4:8:2275:22835:16792,LH00166:186:2372Y3LT4:8:2276:22390:4167,LH00166:186:2372Y3LT4:8:2276:22406:4167,LH00166:186:2372Y3LT4:8:2277:41863:17240,LH00166:186:2372Y3LT4:8:2278:19089:14144,LH00166:186:2372Y3LT4:8:2278:21969:10444,LH00166:186:2372Y3LT4:8:2278:31200:11047,LH00166:186:2372Y3LT4:8:2280:37737:26769,LH00166:186:2372Y3LT4:8:2281:29647:1967,LH00166:186:2372Y3LT4:8:2287:20165:5750,LH00166:186:2372Y3LT4:8:2287:32009:9898,LH00166:186:2372Y3LT4:8:2287:46312:20351,LH00166:186:2372Y3LT4:8:2288:10271:4671,LH00166:186:2372Y3LT4:8:2290:30868:25073,LH00166:186:2372Y3LT4:8:2294:38772:2163,LH00166:186:2372Y3LT4:8:2298:24558:3102,LH00166:186:2372Y3LT4:8:2298:24566:3116,LH00166:186:2372Y3LT4:8:2311:43739:18585,LH00166:186:2372Y3LT4:8:2313:39169:19833,LH00166:186:2372Y3LT4:8:2314:43561:24611,LH00166:186:2372Y3LT4:8:2318:6582:6128,LH00166:186:2372Y3LT4:8:2321:45026:12434,LH00166:186:2372Y3LT4:8:2330:9681:15951,LH00166:186:2372Y3LT4:8:2334:29008:29641,LH00166:186:2372Y3LT4:8:2338:2011:24975,LH00166:186:2372Y3LT4:8:2346:28813:10360,LH00166:186:2372Y3LT4:8:2348:38206:10795,LH00166:186:2372Y3LT4:8:2358:38885:22145,LH00166:186:2372Y3LT4:8:2358:47825:6577,LH00166:186:2372Y3LT4:8:2361:33328:19468,LH00166:186:2372Y3LT4:8:2371:47064:22551,LH00166:186:2372Y3LT4:8:2373:41296:15419,LH00166:186:2372Y3LT4:8:2377:37898:20127,LH00166:186:2372Y3LT4:8:2382:12253:10150,LH00166:186:2372Y3LT4:8:2384:19041:11509,LH00166:186:2372Y3LT4:8:2386:13451:16035,LH00166:186:2372Y3LT4:8:2386:16209:29725,LH00166:186:2372Y3LT4:8:2390:5951:25746,LH00166:186:2372Y3LT4:8:2391:23029:9533,LH00166:186:2372Y3LT4:8:2402:35755:7614,LH00166:186:2372Y3LT4:8:2411:19898:20954,LH00166:186:2372Y3LT4:8:2412:3184:17310,LH00166:186:2372Y3LT4:8:2412:43481:11551,LH00166:186:2372Y3LT4:8:2413:48747:20617,LH00166:186:2372Y3LT4:8:2422:21597:7866,LH00166:186:2372Y3LT4:8:2425:33101:7782,LH00166:186:2372Y3LT4:8:2431:31855:22411,LH00166:186:2372Y3LT4:8:2442:2149:5680,LH00166:186:2372Y3LT4:8:2446:33481:15222,LH00166:186:2372Y3LT4:8:2447:38619:7278,LH00166:186:2372Y3LT4:8:2450:9486:14578,LH00166:186:2372Y3LT4:8:2451:35229:16512,LH00166:186:2372Y3LT4:8:2452:28765:26699,LH00166:186:2372Y3LT4:8:2454:30553:29011,LH00166:186:2372Y3LT4:8:2466:9236:13023,LH00166:186:2372Y3LT4:8:2471:18086:9015,LH00166:186:2372Y3LT4:8:2471:25132:28338,LH00166:186:2372Y3LT4:8:2473:51029:26138,LH00166:186:2372Y3LT4:8:2476:12520:10052,LH00166:186:2372Y3LT4:8:2480:37769:10430,LH00166:186:2372Y3LT4:8:2484:28182:17030,LH00166:186:2372Y3LT4:8:2487:41507:28786,LH00166:186:2372Y3LT4:8:2488:46547:28492,LH00166:186:2372Y3LT4:8:2495:26839:9576,LH00166:186:2372Y3LT4:8:2497:28053:21066,LH00166:186:2372Y3LT4:8:1103:16727:22831,LH00166:186:2372Y3LT4:8:1257:24963:29249,LH00166:186:2372Y3LT4:8:1342:27778:9323,LH00166:186:2372Y3LT4:8:1342:27786:9337,LH00166:186:2372Y3LT4:8:1349:24930:18263,LH00166:186:2372Y3LT4:8:1349:24946:18263,LH00166:186:2372Y3LT4:8:1355:9729:13037,LH00166:186:2372Y3LT4:8:1433:31855:20449,LH00166:186:2372Y3LT4:8:1468:27373:25381,LH00166:186:2372Y3LT4:8:1497:26928:23798,LH00166:186:2372Y3LT4:8:1497:26937:23812,LH00166:186:2372Y3LT4:8:2144:20214:5526,LH00166:186:2372Y3LT4:8:2235:2480:24162,LH00166:186:2372Y3LT4:8:2281:26484:11733,LH00166:186:2372Y3LT4:8:2297:33320:21752,LH00166:186:2372Y3LT4:8:2297:33328:21766,LH00166:186:2372Y3LT4:8:2325:20780:4433,LH00166:186:2372Y3LT4:8:2325:20788:4447,LH00166:186:2372Y3LT4:8:2342:48593:26853,LH00166:186:2372Y3LT4:8:2373:16711:21038,LH00166:186:2372Y3LT4:8:2405:42882:29347,LH00166:186:2372Y3LT4:8:2453:11897:10935,LH00166:186:2372Y3LT4:8:2456:42664:18936,LH00166:186:2372Y3LT4:8:2456:42672:18922,LH00166:186:2372Y3LT4:8:2459:20092:11173,LH00166:186:2372Y3LT4:8:2497:42615:6185,LH00166:186:2372Y3LT4:8:2497:42631:6185	out-of-frame	Calcium-binding_EGF_domain(24%),EGF-like_domain(16%),Human_growth_factor-like_EGF(26%)|	CDS/splice-site	intergenic	72	74	-/-	./-	.	154	ENST00000256646	.	duplication	0.00728807057920982	0.24	0.12364403528960491																																						659_dDe	Arriba
fp_audit	659_db9	fusion	AL138733--ESR1	ESR1--AL138733	AL138733--ESR1	FP	FP		Arriba		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	ESR1	AL138733	152061124	151219552	chr6:152061124-chr6:151219552	+,+	Arriba	1	1	4		5	PASS	out-of-frame	ESR1--AL138733	AL138733--ESR1	confidence:medium;duplicates(6)	medium	duplication/5'-5'	CDS/splice-site	intron	23376	1	6.0	0.0	0.0	0.0									4	0	False	duplicates(6)		FAIL		False	chr6:152061124	chr6:151219552	chr6:152061124-chr6:151219552	.	.	medium	23376	1	downstream	upstream	1	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(6)	GGGAGCTGGTTCACATGATCAACTGGGCGAAGAGGGTGCCAG___GCTTTGTGGATTTGACCCTCCATGATCAGGTCCACCTTCTAGAATGTGCCTGGCTAGAGATCCTGATGATTGGTCTCGTCTGGCGCTCCATGGAGCACCCAGGGAAGCTACTGTTTGCTCCTAACTTGCTCTTGGACAG___GAACCAGGGAAAATGTGTAGAGGGCATGGTGGAGATCTTCGACATGCTGCTGGCTACATCATCTCGGTTCCGCATGATGAATCTGCAGGGAGAGGAGTTTGTGTGCCTCAAATCTATTATTTTGCTTAATTCTG|ATCTGTCTTTTGTCTGTTTAACTCACAGACCTCAATAAAGG...___GGTCGGAAATGAAAGGATGCAAGCCACTTGTGCTGGTATTATTTAAAGTCTTCATCTTTTGAGAAAGGCTGAtGGCAAAGGAACAGATCTATGCTGTCATGTGTCGGCATCGCGC	ESR1	AL138733.1	ENSG00000091831	ENSG00000223598	ELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNS|dlsfvclthrpq*	LH00166:186:2372Y3LT4:8:1108:1712:21878,LH00166:186:2372Y3LT4:8:1108:1728:21878,LH00166:186:2372Y3LT4:8:1194:42631:15489,LH00166:186:2372Y3LT4:8:1261:51134:12028,LH00166:186:2372Y3LT4:8:1261:51142:12014,LH00166:186:2372Y3LT4:8:1380:20384:11173,LH00166:186:2372Y3LT4:8:1455:43828:5148,LH00166:186:2372Y3LT4:8:2288:15821:19720,LH00166:186:2372Y3LT4:8:2324:4948:21654,LH00166:186:2372Y3LT4:8:2324:4956:21668,LH00166:186:2372Y3LT4:8:1417:33676:2976	out-of-frame	Ligand-binding_domain_of_nuclear_hormone_receptor(69%),Oestrogen_receptor(100%),Zinc_finger__C4_type_(two_domains)(100%)|	CDS/splice-site	intron	4	0	+/+	-/+	.	5	ENST00000440973	.	duplication/5'-5'	0.00019246808237633926	0.3333333333333333	0.16676290070785482																																						659_db9	Arriba
fp_audit	659_db9	fusion	CHCHD2P8--FLT3	FLT3--CHCHD2P8	CHCHD2P8--FLT3	FP	FP		Arriba		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr13	chr13	FLT3	CHCHD2P8	28070491	28107891	chr13:28070491-chr13:28107891	-,-	Arriba	1	0	3		3	PASS	out-of-frame	FLT3--CHCHD2P8	CHCHD2P8--FLT3	confidence:low	low	duplication/5'-5'	CDS/splice-site	intergenic	72	23													1	2	False			FAIL		False	chr13:28070491	chr13:28107891	chr13:28070491-chr13:28107891	.	.	low	72	23	upstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(3.0<8.0)	.	TTTTCTGCAATGATATTTGGGACTATTACAAATCAAGATCTGCCTGTGATCAAGTGTGTTTTAATCAATCATAAGAACAATGATTCATCAGTGGGGAAGTCATCATCATATCCCATG|GTTGAACTTCTTGATCAGGCCAATCGTTTTGCCAGTCGGCACTGTTTCAGCACCTCATTGAAACCCTCACAGAGCTTGATGTCACCATGGTTCTGGGCACACTCCAGAAACTGTTCGATCTCATAGAAGCAAGGCTGCTGCTGCTGTGCCAGCTGGGTTCCCTGAGGCTCCTGG	FLT3	CHCHD2P8	ENSG00000122025	ENSG00000235115	FSAMIFGTITNQDLPVIKCVLINHKNNDSSVGKSSSYPM|velldqanrfasrhcfstslkpsqslmspwfwahsrncsis*	LH00166:186:2372Y3LT4:8:1235:44670:1757,LH00166:186:2372Y3LT4:8:2311:47170:18838,LH00166:186:2372Y3LT4:8:2394:35860:21220	out-of-frame	.	CDS/splice-site	intergenic	1	2	-/-	+/-	.	3	ENST00000241453	.	duplication/5'-5'	0.0136986301369863	0.08	0.04684931506849315																																						659_db9	Arriba
fp_audit	659_db9	fusion	CSF1R--CSNK1A1	CSNK1A1--CSF1R	CSF1R--CSNK1A1	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr5	chr5	CSNK1A1	CSF1R	149520290	150068330	chr5:149520290-chr5:150068330	-,-	Arriba	1	7	78		85	PASS	out-of-frame	CSNK1A1--CSF1R	CSF1R--CSNK1A1	confidence:high;duplicates(52),mismatches(5)	high	duplication	CDS/splice-site	CDS/splice-site	3746	829	52.0	5.0	0.0	0.0									42	36	False	duplicates(52),mismatches(5)		PASS		False	chr5:149520290	chr5:150068330	chr5:149520290-chr5:150068330	.	.	high	3746	829	upstream	downstream	7		duplicates(52),mismatches(5)	CTGTACGAGAGCAAGCTCTATAAGATTCTTCAAGGTGGGGTTGGCATCCCCCACATACG___GTGGTATGGTCAGGAAAAAGACTACAATGTACTAGTCATGGATCTTCTGGGACCTAGCCTCGAAGACCTCTTCAATTTCTGTTCAAGAAGGTTCACAATGAAAACTGTACTTATGTTAGCTGACCAG___ATGATCAGTAGAATTGAATATGTGCATACAAAGAATTTTATACACAGAGACATTAAACCAGATAACTTCCTAATGGGTATTGGGCGTCACTGTAATAAG|GAGCCCACACGCATCCCCCGGATGAGTTCCTCTTCACACCAGTGGTGGTCGCCTGCATGTCCATCATGGCCTTGCTGCTGCTGCTGCTCCTGCTGCTATTGTACAAGTATAAGCAG___AAGCCCAAGTACCAGGTCCGCTGGAAGATCATCGAGAGCTATGAGGGCAACAGTTATACTTTCATCGACCCCACGCAGCTGCCT	CSNK1A1	CSF1R	ENSG00000113712	ENSG00000182578	LYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCNK|eptriprmsssshqwwspacpswpcccccsccyctsisrspstrsagrssramratvilsstprsc	LH00166:186:2372Y3LT4:8:1117:48189:13429,LH00166:186:2372Y3LT4:8:1141:39670:14284,LH00166:186:2372Y3LT4:8:1141:39686:14284,LH00166:186:2372Y3LT4:8:1143:21832:13373,LH00166:186:2372Y3LT4:8:1155:44702:12995,LH00166:186:2372Y3LT4:8:1155:44710:12981,LH00166:186:2372Y3LT4:8:1156:17277:1168,LH00166:186:2372Y3LT4:8:1170:20367:27371,LH00166:186:2372Y3LT4:8:1170:47898:16259,LH00166:186:2372Y3LT4:8:1228:20473:11944,LH00166:186:2372Y3LT4:8:1228:20481:11930,LH00166:186:2372Y3LT4:8:1229:9187:15208,LH00166:186:2372Y3LT4:8:1246:29533:29263,LH00166:186:2372Y3LT4:8:1253:35771:24316,LH00166:186:2372Y3LT4:8:1279:31871:9239,LH00166:186:2372Y3LT4:8:1279:31888:9239,LH00166:186:2372Y3LT4:8:1297:35593:15265,LH00166:186:2372Y3LT4:8:1312:35641:14816,LH00166:186:2372Y3LT4:8:1319:43723:28534,LH00166:186:2372Y3LT4:8:1319:43731:28548,LH00166:186:2372Y3LT4:8:1319:43739:28534,LH00166:186:2372Y3LT4:8:1319:43739:28562,LH00166:186:2372Y3LT4:8:1331:31774:23055,LH00166:186:2372Y3LT4:8:1334:4333:22243,LH00166:186:2372Y3LT4:8:1343:16889:22663,LH00166:186:2372Y3LT4:8:1343:16905:22663,LH00166:186:2372Y3LT4:8:1359:16282:24387,LH00166:186:2372Y3LT4:8:1365:29412:5960,LH00166:186:2372Y3LT4:8:1379:26613:6493,LH00166:186:2372Y3LT4:8:1379:28385:13121,LH00166:186:2372Y3LT4:8:1379:28401:13121,LH00166:186:2372Y3LT4:8:1379:28409:13107,LH00166:186:2372Y3LT4:8:1379:28417:13121,LH00166:186:2372Y3LT4:8:1420:51595:1645,LH00166:186:2372Y3LT4:8:1426:3192:15026,LH00166:186:2372Y3LT4:8:1436:14664:12028,LH00166:186:2372Y3LT4:8:1477:35763:1238,LH00166:186:2372Y3LT4:8:1477:35779:1238,LH00166:186:2372Y3LT4:8:1482:14300:15657,LH00166:186:2372Y3LT4:8:1490:49136:11986,LH00166:186:2372Y3LT4:8:2149:36224:13835,LH00166:186:2372Y3LT4:8:2155:20998:8595,LH00166:186:2372Y3LT4:8:2156:37599:22971,LH00166:186:2372Y3LT4:8:2194:1785:7656,LH00166:186:2372Y3LT4:8:2197:29574:19076,LH00166:186:2372Y3LT4:8:2221:2408:8763,LH00166:186:2372Y3LT4:8:2224:21743:23027,LH00166:186:2372Y3LT4:8:2231:48221:8413,LH00166:186:2372Y3LT4:8:2231:48229:8398,LH00166:186:2372Y3LT4:8:2231:48238:8384,LH00166:186:2372Y3LT4:8:2261:21071:18221,LH00166:186:2372Y3LT4:8:2261:21079:18235,LH00166:186:2372Y3LT4:8:2265:44290:14214,LH00166:186:2372Y3LT4:8:2266:5482:21290,LH00166:186:2372Y3LT4:8:2287:21832:28618,LH00166:186:2372Y3LT4:8:2292:10546:14031,LH00166:186:2372Y3LT4:8:2295:44476:28772,LH00166:186:2372Y3LT4:8:2317:1696:7362,LH00166:186:2372Y3LT4:8:2325:44403:6563,LH00166:186:2372Y3LT4:8:2359:34347:26446,LH00166:186:2372Y3LT4:8:2361:7577:2808,LH00166:186:2372Y3LT4:8:2382:10781:2107,LH00166:186:2372Y3LT4:8:2404:33150:1280,LH00166:186:2372Y3LT4:8:2407:16573:18641,LH00166:186:2372Y3LT4:8:2429:18393:7109,LH00166:186:2372Y3LT4:8:2436:1445:19987,LH00166:186:2372Y3LT4:8:2436:8435:4125,LH00166:186:2372Y3LT4:8:2440:33263:9267,LH00166:186:2372Y3LT4:8:2454:12561:18866,LH00166:186:2372Y3LT4:8:2462:28506:22411,LH00166:186:2372Y3LT4:8:2476:10028:8342,LH00166:186:2372Y3LT4:8:2492:24291:12672,LH00166:186:2372Y3LT4:8:1117:51109:28296,LH00166:186:2372Y3LT4:8:1132:2230:16329,LH00166:186:2372Y3LT4:8:1135:24243:2443,LH00166:186:2372Y3LT4:8:1136:11072:28450,LH00166:186:2372Y3LT4:8:1147:8815:2401,LH00166:186:2372Y3LT4:8:1151:7982:2247,LH00166:186:2372Y3LT4:8:1154:11816:23462,LH00166:186:2372Y3LT4:8:1188:27414:18613,LH00166:186:2372Y3LT4:8:1188:27422:18599,LH00166:186:2372Y3LT4:8:1201:49144:12392,LH00166:186:2372Y3LT4:8:1201:49152:12378,LH00166:186:2372Y3LT4:8:1209:19154:15377,LH00166:186:2372Y3LT4:8:1219:14162:14410,LH00166:186:2372Y3LT4:8:1247:10473:20687,LH00166:186:2372Y3LT4:8:1252:24243:12112,LH00166:186:2372Y3LT4:8:1252:24251:12098,LH00166:186:2372Y3LT4:8:1266:28239:14158,LH00166:186:2372Y3LT4:8:1268:27090:25003,LH00166:186:2372Y3LT4:8:1275:44896:28688,LH00166:186:2372Y3LT4:8:1318:19372:17408,LH00166:186:2372Y3LT4:8:1329:26055:4013,LH00166:186:2372Y3LT4:8:1332:24825:1575,LH00166:186:2372Y3LT4:8:1336:28061:27161,LH00166:186:2372Y3LT4:8:1345:24048:19650,LH00166:186:2372Y3LT4:8:1366:20173:10556,LH00166:186:2372Y3LT4:8:1373:37971:7165,LH00166:186:2372Y3LT4:8:1405:16881:4013,LH00166:186:2372Y3LT4:8:1405:16881:4041,LH00166:186:2372Y3LT4:8:1405:16889:4027,LH00166:186:2372Y3LT4:8:1422:40390:19174,LH00166:186:2372Y3LT4:8:1480:22689:4853,LH00166:186:2372Y3LT4:8:1491:28401:18641,LH00166:186:2372Y3LT4:8:2135:7076:11467,LH00166:186:2372Y3LT4:8:2155:34606:7109,LH00166:186:2372Y3LT4:8:2182:30124:20645,LH00166:186:2372Y3LT4:8:2210:19469:6227,LH00166:186:2372Y3LT4:8:2210:19478:6213,LH00166:186:2372Y3LT4:8:2211:40520:1350,LH00166:186:2372Y3LT4:8:2220:5053:4629,LH00166:186:2372Y3LT4:8:2247:20173:4279,LH00166:186:2372Y3LT4:8:2248:14769:23756,LH00166:186:2372Y3LT4:8:2257:35051:11635,LH00166:186:2372Y3LT4:8:2265:34865:7614,LH00166:186:2372Y3LT4:8:2326:37971:27876,LH00166:186:2372Y3LT4:8:2328:42469:7978,LH00166:186:2372Y3LT4:8:2331:26314:3200,LH00166:186:2372Y3LT4:8:2331:29145:10262,LH00166:186:2372Y3LT4:8:2340:3556:16638,LH00166:186:2372Y3LT4:8:2341:16064:16722,LH00166:186:2372Y3LT4:8:2341:16080:16722,LH00166:186:2372Y3LT4:8:2362:16881:19734,LH00166:186:2372Y3LT4:8:2428:45778:18193,LH00166:186:2372Y3LT4:8:2431:28741:8861,LH00166:186:2372Y3LT4:8:2431:28757:8861,LH00166:186:2372Y3LT4:8:2436:44904:10682,LH00166:186:2372Y3LT4:8:2449:49313:11874,LH00166:186:2372Y3LT4:8:2469:14866:3382,LH00166:186:2372Y3LT4:8:2470:42316:29375,LH00166:186:2372Y3LT4:8:1160:7124:21416,LH00166:186:2372Y3LT4:8:1277:14446:3102,LH00166:186:2372Y3LT4:8:1305:42388:24737,LH00166:186:2372Y3LT4:8:1473:4527:28128,LH00166:186:2372Y3LT4:8:2210:11388:15601,LH00166:186:2372Y3LT4:8:2232:8556:27203,LH00166:186:2372Y3LT4:8:2347:31160:19020,LH00166:186:2372Y3LT4:8:2347:31176:19020,LH00166:186:2372Y3LT4:8:2376:26281:8833,LH00166:186:2372Y3LT4:8:2433:6372:23476,LH00166:186:2372Y3LT4:8:2433:6380:23490,LH00166:186:2372Y3LT4:8:2496:6226:28660	out-of-frame	Protein_kinase_domain(54%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	42	36	-/-	-/-	.	85	ENST00000261798	ENST00000286301	duplication	0.012000527495714097	0.04548071387449626	0.02874062068510518																																						659_db9	Arriba
fp_audit	659_db9	fusion	CSF1R--CSNK1A1	CSNK1A1--CSF1R	CSF1R--CSNK1A1	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr5	chr5	CSNK1A1	CSF1R	149517794	150068330	chr5:149517794-chr5:150068330	-,-	Arriba	1	7	4		11	PASS	out-of-frame	CSNK1A1--CSF1R	CSF1R--CSNK1A1	confidence:high;duplicates(5)	high	duplication	CDS/splice-site	CDS/splice-site	749	829	5.0	0.0	0.0	0.0									2	2	False	duplicates(5)		PASS		False	chr5:149517794	chr5:150068330	chr5:149517794-chr5:150068330	.	.	high	749	829	upstream	downstream	7		duplicates(5)	ATTTTATACACAGAGACATTAAACCAGATAACTTCCTAATGGGTATTGGGCGTCACTGTAATAAG___TGTTTAGAATCTCCAGTGGGGAAGAGGAAAAGAAGCATGACTGTTAGTACTTCTCAGGACCCATCTTTCTCAGGATTAAACCAG|GAGCCCACACGCATCCCCCGGATGAGTTCCTCTTCACACCAGTGGTGGTCGCCTGCATGTCCATCATGGCCTTGCTGCTGCTGCTGCTCCTGCTGCTATTGTACAAGTATAAGCAG___AAGCCCAAGTACCAGGTCCGCTGGAAGATCATCGAGAGCTATGAGGGCAACAGTTATACTTTCATCGACCCCACGCAGCTGCCTTACAACGAGAAGTGGGAGTTCCCCCG	CSNK1A1	CSF1R	ENSG00000113712	ENSG00000182578	FIHRDIKPDNFLMGIGRHCNKCLESPVGKRKRSMTVSTSQDPSFSGLNQ|eptriprmsssshqwwspacpswpcccccsccyctsisrspstrsagrssramratvilsstprsclttrsgssp	LH00166:186:2372Y3LT4:8:1422:40471:6787,LH00166:186:2372Y3LT4:8:2371:37567:5624,LH00166:186:2372Y3LT4:8:1215:7804:20968,LH00166:186:2372Y3LT4:8:2319:18952:9309,LH00166:186:2372Y3LT4:8:1160:7124:21416,LH00166:186:2372Y3LT4:8:1277:14446:3102,LH00166:186:2372Y3LT4:8:1305:42388:24737,LH00166:186:2372Y3LT4:8:1473:4527:28128,LH00166:186:2372Y3LT4:8:2210:11388:15601,LH00166:186:2372Y3LT4:8:2232:8556:27203,LH00166:186:2372Y3LT4:8:2347:31160:19020,LH00166:186:2372Y3LT4:8:2347:31176:19020,LH00166:186:2372Y3LT4:8:2376:26281:8833,LH00166:186:2372Y3LT4:8:2433:6372:23476,LH00166:186:2372Y3LT4:8:2433:6380:23490,LH00166:186:2372Y3LT4:8:2496:6226:28660	out-of-frame	Protein_kinase_domain(66%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	2	2	-/-	-/-	.	11	ENST00000261798	ENST00000286301	duplication	0.00728959575878065	0.006590772917914919	0.006940184338347784																																						659_db9	Arriba
fp_audit	659_db9	fusion	CSF1R--CSNK1A1	CSNK1A1--CSF1R	CSF1R--CSNK1A1	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr5	chr5	CSNK1A1	CSF1R	149525045	150068330	chr5:149525045-chr5:150068330	-,-	Arriba	1	1	4		5	PASS	out-of-frame	CSNK1A1--CSF1R	CSF1R--CSNK1A1	confidence:medium;duplicates(2)	medium	duplication	CDS/splice-site	CDS/splice-site	5396	829	2.0	0.0	0.0	0.0									1	3	False	duplicates(2)		FAIL		False	chr5:149525045	chr5:150068330	chr5:149525045-chr5:150068330	.	.	medium	5396	829	upstream	downstream	1	confidence_below_min(medium<high);total_reads_below_min(5.0<8.0)	duplicates(2)	CTGTACGAGAGCAAGCTCTATAAGATTCTTCAAGGTGGGGTTGGCATCCCCCACATACG___GTGGTATGGTCAGGAAAAAGACTACAATGTACTAGTCATGGATCTTCTGGGACCTAGCCTCGAAGACCTCTTCAATTTCTGTTCAAGAAGGTTCACAATGAAAACTGTACTTATGTTAGCTGACCAG|GAGCCCACACGCATCCCCCGGATGAGTTCCTCTTCACACCAGTGGTGGTCGCCTGCATGTCCATCATGGCCTTGCTGCTGCTGCTGCTCCTGCTGCTATTGTACAAGTATAAGCAG___AAGCCCAAGTACCAGGTCCGCTGGAAGATCATCGAGAGCTATGAGGGCAACAGTTATACTTTCATCGACCCCACGCAGCTGCC	CSNK1A1	CSF1R	ENSG00000113712	ENSG00000182578	LYESKLYKILQGGVGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQ|eptriprmsssshqwwspacpswpcccccsccyctsisrspstrsagrssramratvilsstprsc	LH00166:186:2372Y3LT4:8:2214:51045:12462,LH00166:186:2372Y3LT4:8:2412:25885:28941,LH00166:186:2372Y3LT4:8:1172:26168:9954,LH00166:186:2372Y3LT4:8:1423:39233:1224,LH00166:186:2372Y3LT4:8:2397:26856:21122,LH00166:186:2372Y3LT4:8:2347:31160:19020,LH00166:186:2372Y3LT4:8:2347:31176:19020	out-of-frame	Protein_kinase_domain(41%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	3	-/-	-/-	.	5	ENST00000261798	ENST00000286301	duplication	0.0002779064381658175	0.004204204204204204	0.002241055321185011																																						659_db9	Arriba
fp_audit	659_db9	fusion	CSF1R--CSNK1A1	CSNK1A1--CSF1R	CSF1R--CSNK1A1	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr5	chr5	CSNK1A1	CSF1R	149520290	150061849	chr5:149520290-chr5:150061849	-,-	Arriba	1	0	2		2	PASS	in-frame	CSNK1A1--CSF1R	CSF1R--CSNK1A1	confidence:medium;duplicates(1)	medium	duplication	CDS/splice-site	CDS/splice-site	3746	693	1.0	0.0	0.0	0.0									1	1	True	duplicates(1)		FAIL		False	chr5:149520290	chr5:150061849	chr5:149520290-chr5:150061849	.	.	medium	3746	693	upstream	downstream	0	confidence_below_min(medium<high);total_reads_below_min(2.0<8.0)	duplicates(1)	AAAAAGACTACAATGTACTAGTCATGGATCTTCTGGGACCTAGCCTCGAAGACCTCTTCAATTTCTGTTCAAGAAGGTTCACAATGAAAACTGTACTTATGTTAGCTGACCAG___ATGATCAGTAGAATTGAATATGTGCATACAAAGAATTTTATACACAGAGACATTAAACCAGATAACTTCCTAATGGGTATTGGGCGTCACTGTAATAAG|AAGCCCAAGTACCAGGTCCGCTGGAAGATCATCGAGAGCTATGAGGGCAACAGTTATACTTTCATCGACCCCACGCAGCTGCCTTACAACGAG	CSNK1A1	CSF1R	ENSG00000113712	ENSG00000182578	KDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCNK|KPKYQVRWKIIESYEGNSYTFIDPTQLPYN	LH00166:186:2372Y3LT4:8:2305:8451:14017,LH00166:186:2372Y3LT4:8:2305:8459:14003,LH00166:186:2372Y3LT4:8:1419:17487:26334	in-frame	Protein_kinase_domain(54%)|Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	1	-/-	-/-	.	2	ENST00000261798	ENST00000286301	duplication	0.0002668801708033093	0.001440922190201729	0.0008539011805025192																																						659_db9	Arriba
fp_audit	659_db9	fusion	CSF1R--CSNK1A1	CSNK1A1--CSF1R	CSF1R--CSNK1A1	FP	FP		Arriba; STAR-Fusion		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr5	chr5	CSNK1A1	CSF1R	149520290	150068330	chr5:149520290-chr5:150068330	-,-	STAR-Fusion	1	8	83	0.4172	91	PASS	out-of-frame	CSNK1A1--CSF1R	CSF1R--CSNK1A1	"[""INTRACHROMOSOMAL[chr5:0.50Mb]""]"											ONLY_REF_SPLICE	YES_LDAS	1.7465	False	False	False	GT	AG	83		False																																										1	ENST00000657706.1	1-690	ENST00000675795.1	1511-2919	0.4172	PASS	atggcgagtagcagcggctccaaggctgaattcattgtcggagggaaatataaactggtacggaagatcgggtctggctccttcggggacatctatttggcgatcaacatcaccaacggcgaggaagtggcagtgaagctagaatctcagaaggccaggcatccccagttgctgtacgagagcaagctctataagattcttcaaggtggggttggcatcccccacatacgagttttgttcttgttgcccaggcaggagtgcaatagcgtgatctcggctcactgcaacctcggcctcccgggttcaagcaattttcctgcctcagccttccaagtagctggattacagcatgtaaagctcataagccttgcactgaagaacctatactgcagcttcaatctatctgccaccttgactcttccctttatgacagcccatgccccaaaatggtttgcccctgcctggtggtatggtcaggaaaaagactacaatgtactagtcatggatcttctgggacctagcctcgaagacctcttcaatttctgttcaagaaggttcacaatgaaaactgtacttatgttagctgaccagatgatcagtagaattgaatatgtgcatacaaagaattttatacacagagacattaaaccagataacttcctaatgggtattgggcgtcactgtaataagGAGCCCACACGCATCCCCCGGATGAGTTCCTCTTCACACCAGTGGTGGTCGCCTGCATGTCCATCATGGCCTTGCTGCTGCTGCTGCTCCTGCTGCTATTGTACAAGTATAAGCAGAAGCCCAAGTACCAGGTCCGCTGGAAGATCATCGAGAGCTATGAGGGCAACAGTTATACTTTCATCGACCCCACGCAGCTGCCTTACAACGAGAAGTGGGAGTTCCCCCGGAACAACCTGCAGTTTGGTAAGACCCTCGGAGCTGGAGCCTTTGGGAAGGTGGTGGAGGCCACGGCCTTTGGTCTGGGCAAGGAGGATGCTGTCCTGAAGGTGGCTGTGAAGATGCTGAAGTCCACGGCCCATGCTGATGAGAAGGAGGCCCTCATGTCCGAGCTGAAGATCATGAGCCACCTGGGCCAGCACGAGAACATCGTCAACCTTCTGGGAGCCTGTACCCATGGAGGCCCTGTACTGGTCATCACGGAGTACTGTTGCTATGGCGACCTGCTCAACTTTCTGCGAAGGAAGGCTGAGGCCATGCTGGGACCCAGCCTGAGCCCCGGCCAGGACCCCGAGGGAGGCGTCGACTATAAGAACATCCACCTCGAGAAGAAATATGTCCGCAGGGACAGTGGCTTCTCCAGCCAGGGTGTGGACACCTATGTGGAGATGAGGCCTGTCTCCACTTCTTCAAATGACTCCTTCTCTGAGCAAGACCTGGACAAGGAGGATGGACGGCCCCTGGAGCTCCGGGACCTGCTTCACTTCTCCAGCCAAGTAGCCCAGGGCATGGCCTTCCTCGCTTCCAAGAATTGCATCCACCGGGACGTGGCAGCGCGTAACGTGCTGTTGACCAATGGTCATGTGGCCAAGATTGGGGACTTCGGGCTGGCTAGGGACATCATGAATGACTCCAACTACATTGTCAAGGGCAATGCCCGCCTGCCTGTGAAGTGGATGGCCCCAGAGAGCATCTTTGACTGTGTCTACACGGTTCAGAGCGACGTCTGGTCCTATGGCATCCTCCTCTGGGAGATCTTCTCACTTGGGCTGAATCCCTACCCTGGCATCCTGGTGAACAGCAAGTTCTATAAACTGGTGAAGGATGGATACCAAATGGCCCAGCCTGCATTTGCCCCAAAGAATATATACAGCATCATGCAGGCCTGCTGGGCCTTGGAGCCCACCCACAGACCCACCTTCCAGCAGATCTGCTCCTTCCTTCAGGAGCAGGCCCAAGAGGACAGGAGAGAGCGGGACTATACCAATCTGCCGAGCAGCAGCAGAAGCGGTGGCAGCGGCAGCAGCAGCAGTGAGCTGGAGGAGGAGAGCTCTAGTGAGCACCTGACCTGCTGCGAGCAAGGGGATATCGCCCAGCCCTTGCTGCAGCCCAACAACTATCAGTTCTGCTGA	chr5|-|[2]149520290-149520388[0]|[2]149525045-149525171[2]|[1]149529604-149529719[0]|[2]149531394-149531511[2]|[1]149550075-149550181[0]|[2]149550842-149550964[0]<==>chr5|-|[2]150054069-150054224[0]|[2]150054322-150054430[2]|[1]150055237-150055336[1]|[0]150056026-150056137[0]|[2]150056219-150056341[0]|[2]150057287-150057384[1]|[0]150057504-150057592[2]|[1]150059700-150059862[1]|[0]150060862-150060972[1]|[0]150061491-150061595[1]|[0]150061723-150061849[0]|[2]150068215-150068330[1]	MASSSGSKAEFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRVLFLLPRQECNSVISAHCNLGLPGSSNFPASAFQVAGLQHVKLISLALKNLYCSFNLSATLTLPFMTAHAPKWFAPAWWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKEPTRIPRMSSSSHQWWSPACPSWPCCCCCSCCYCTSISRSPSTRSAGRSSRAMRATVILSSTPRSCLTTRSGSSPGTTCSLVRPSELEPLGRWWRPRPLVWARRMLS*RWL*RC*SPRPMLMRRRPSCPS*RS*ATWASTRTSSTFWEPVPMEALYWSSRSTVAMATCSTFCEGRLRPCWDPA*APARTPREASTIRTSTSRRNMSAGTVASPARVWTPMWR*GLSPLLQMTPSLSKTWTRRMDGPWSSGTCFTSPAK*PRAWPSSLPRIASTGTWQRVTCC*PMVMWPRLGTSGWLGTS*MTPTTLSRAMPACL*SGWPQRASLTVSTRFRATSGPMASSSGRSSHLG*IPTLASW*TASSINW*RMDTKWPSLHLPQRIYTASCRPAGPWSPPTDPPSSRSAPSFRSRPKRTGESGTIPICRAAAEAVAAAAAAVSWRRRALVST*PAASKGISPSPCCSPTTISSA	CSNK1A1--CSF1R	83	LH00166:186:2372Y3LT4:8:1117:48189:13429,LH00166:186:2372Y3LT4:8:1117:51109:28296,LH00166:186:2372Y3LT4:8:1132:2230:16329,LH00166:186:2372Y3LT4:8:1135:24243:2443,LH00166:186:2372Y3LT4:8:1136:11072:28450,LH00166:186:2372Y3LT4:8:1141:39670:14284,LH00166:186:2372Y3LT4:8:1143:21832:13373,LH00166:186:2372Y3LT4:8:1147:8815:2401,LH00166:186:2372Y3LT4:8:1151:7982:2247,LH00166:186:2372Y3LT4:8:1154:11816:23462,LH00166:186:2372Y3LT4:8:1155:44702:12995,LH00166:186:2372Y3LT4:8:1156:17277:1168,LH00166:186:2372Y3LT4:8:1170:20367:27371,LH00166:186:2372Y3LT4:8:1170:47898:16259,LH00166:186:2372Y3LT4:8:1201:49144:12392,LH00166:186:2372Y3LT4:8:1209:19154:15377,LH00166:186:2372Y3LT4:8:1228:20473:11944,LH00166:186:2372Y3LT4:8:1229:9187:15208,LH00166:186:2372Y3LT4:8:1246:29533:29263,LH00166:186:2372Y3LT4:8:1247:10473:20687,LH00166:186:2372Y3LT4:8:1252:24243:12112,LH00166:186:2372Y3LT4:8:1253:35771:24316,LH00166:186:2372Y3LT4:8:1266:28239:14158,LH00166:186:2372Y3LT4:8:1268:27090:25003,LH00166:186:2372Y3LT4:8:1275:44896:28688,LH00166:186:2372Y3LT4:8:1279:31871:9239,LH00166:186:2372Y3LT4:8:1297:35593:15265,LH00166:186:2372Y3LT4:8:1312:35641:14816,LH00166:186:2372Y3LT4:8:1318:19372:17408,LH00166:186:2372Y3LT4:8:1329:26055:4013,LH00166:186:2372Y3LT4:8:1331:31774:23055,LH00166:186:2372Y3LT4:8:1334:4333:22243,LH00166:186:2372Y3LT4:8:1336:28061:27161,LH00166:186:2372Y3LT4:8:1343:16889:22663,LH00166:186:2372Y3LT4:8:1345:24048:19650,LH00166:186:2372Y3LT4:8:1359:16282:24387,LH00166:186:2372Y3LT4:8:1365:29412:5960,LH00166:186:2372Y3LT4:8:1366:20173:10556,LH00166:186:2372Y3LT4:8:1379:26613:6493,LH00166:186:2372Y3LT4:8:1379:28385:13121,LH00166:186:2372Y3LT4:8:1405:16881:4013,LH00166:186:2372Y3LT4:8:1422:40390:19174,LH00166:186:2372Y3LT4:8:1426:3192:15026,LH00166:186:2372Y3LT4:8:1477:35763:1238,LH00166:186:2372Y3LT4:8:1480:22689:4853,LH00166:186:2372Y3LT4:8:1482:14300:15657,LH00166:186:2372Y3LT4:8:1491:28401:18641,LH00166:186:2372Y3LT4:8:2135:7076:11467,LH00166:186:2372Y3LT4:8:2149:36224:13835,LH00166:186:2372Y3LT4:8:2155:34606:7109,LH00166:186:2372Y3LT4:8:2156:37599:22971,LH00166:186:2372Y3LT4:8:2182:30124:20645,LH00166:186:2372Y3LT4:8:2194:1785:7656,LH00166:186:2372Y3LT4:8:2197:29574:19076,LH00166:186:2372Y3LT4:8:2210:19469:6227,LH00166:186:2372Y3LT4:8:2211:40520:1350,LH00166:186:2372Y3LT4:8:2220:5053:4629,LH00166:186:2372Y3LT4:8:2221:2408:8763,LH00166:186:2372Y3LT4:8:2224:21743:23027,LH00166:186:2372Y3LT4:8:2247:20173:4279,LH00166:186:2372Y3LT4:8:2248:14769:23756,LH00166:186:2372Y3LT4:8:2261:21071:18221,LH00166:186:2372Y3LT4:8:2265:34865:7614,LH00166:186:2372Y3LT4:8:2266:5482:21290,LH00166:186:2372Y3LT4:8:2292:10546:14031,LH00166:186:2372Y3LT4:8:2317:1696:7362,LH00166:186:2372Y3LT4:8:2325:44403:6563,LH00166:186:2372Y3LT4:8:2326:37971:27876,LH00166:186:2372Y3LT4:8:2331:29145:10262,LH00166:186:2372Y3LT4:8:2340:3556:16638,LH00166:186:2372Y3LT4:8:2361:7577:2808,LH00166:186:2372Y3LT4:8:2362:16881:19734,LH00166:186:2372Y3LT4:8:2382:10781:2107,LH00166:186:2372Y3LT4:8:2404:33150:1280,LH00166:186:2372Y3LT4:8:2407:16573:18641,LH00166:186:2372Y3LT4:8:2429:18393:7109,LH00166:186:2372Y3LT4:8:2436:1445:19987,LH00166:186:2372Y3LT4:8:2436:8435:4125,LH00166:186:2372Y3LT4:8:2449:49313:11874,LH00166:186:2372Y3LT4:8:2454:12561:18866,LH00166:186:2372Y3LT4:8:2462:28506:22411,LH00166:186:2372Y3LT4:8:2476:10028:8342,LH00166:186:2372Y3LT4:8:2492:24291:12672	YES_LDAS	GT	1.9656	chr5:149520290:-	CSNK1A1^ENSG00000113712.19	Pkinase|17-54|8.9e-08^PK_Tyr_Ser-Thr|18-60|1.9e-05^ABC1|23-49|0.00025^Pkinase|159-313|1.1e-20^PK_Tyr_Ser-Thr|164-322|5.5e-12^Pox_ser-thr_kin|186-222|1.5e-05^Kdo|197-248|8.8e-05^Pkinase_fungal|203-291|2.1e-13^ABC1|273-296|1.9^Kdo|339-374|0.64	.	FRAMESHIFT	AG	1.7465	chr5:150068330:-	CSF1R^ENSG00000182578.14	8	LH00166:186:2372Y3LT4:8:1160:7124:21416,LH00166:186:2372Y3LT4:8:1277:14446:3102,LH00166:186:2372Y3LT4:8:1305:42388:24737,LH00166:186:2372Y3LT4:8:1473:4527:28128,LH00166:186:2372Y3LT4:8:2210:11388:15601,LH00166:186:2372Y3LT4:8:2232:8556:27203,LH00166:186:2372Y3LT4:8:2347:31160:19020,LH00166:186:2372Y3LT4:8:2433:6372:23476	ONLY_REF_SPLICE		"[""INTRACHROMOSOMAL[chr5:0.50Mb]""]"		False	chr5:149520290-chr5:150068330	83.0	8.0		91	659_db9	STAR-Fusion
fp_audit	659_db9	fusion	NUS1--ROS1	NUS1--ROS1	NUS1--ROS1	FP	FP		Arriba		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	NUS1	ROS1	117676085	117310967	chr6:117676085-chr6:117310967	+,+	Arriba	1	0	6		6	PASS	out-of-frame	NUS1--ROS1	NUS1--ROS1	confidence:medium;duplicates(1),mismatches(1)	medium	duplication/5'-5'	CDS/splice-site	intron	2858	98	1.0	1.0	0.0	0.0									2	4	False	duplicates(1),mismatches(1)		FAIL		False	chr6:117676085	chr6:117310967	chr6:117676085-chr6:117310967	.	.	medium	2858	98	downstream	upstream	0	confidence_below_min(medium<high);total_reads_below_min(6.0<8.0)	duplicates(1),mismatches(1)	CCCGCGCGGGGGGTCGTGCCTGGCAGCCGCACACCACCGGATGCGCTGGCGCGCGGACGGTCGTTCCTTGGAGAAGCTGCCTGTGCATATGGGCCTGGTGATCACCGAGGTGGAGCAGGAACCCAGCTTCTCGGACATCGCGAGCCTCGTGGTGTGGTGTATGGCCGTGGGCATCTCCTACATTAGCGTCTACGACCACCAAG|GTGATTATTGTGCCAATATCCGTAATAACCCTGTATCCAGAAGAGAATTGTACCTGTGAATGAAATGCATCCGTTCCAAGTAGACACAGCCTTTTGAAATATCTACACACAGGTCTACAAGGTCAACCAAG___CG	NUS1	ROS1	ENSG00000153989	ENSG00000047936	PRGGSCLAAAHHRMRWRADGRSLEKLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQ|gdycanirnnpvsrrelyl*	LH00166:186:2372Y3LT4:8:1421:7941:22467,LH00166:186:2372Y3LT4:8:1431:44281:25830,LH00166:186:2372Y3LT4:8:1459:19389:17773,LH00166:186:2372Y3LT4:8:2223:42308:4867,LH00166:186:2372Y3LT4:8:2464:41927:10626,LH00166:186:2372Y3LT4:8:2468:26200:2499,LH00166:186:2372Y3LT4:8:2239:35852:4083,LH00166:186:2372Y3LT4:8:2315:41660:9127	out-of-frame	.	CDS/splice-site	intron	2	4	+/+	-/+	.	6	ENST00000368494	.	duplication/5'-5'	0.0006993006993006993	0.0392156862745098	0.019957493486905252																																						659_db9	Arriba
fp_audit	659_db9	fusion	OXNAD1--PPARG	OXNAD1--PPARG	OXNAD1--PPARG	FP	FP		Arriba		cgp_rna_exp0034	659_db9	altera_exact	1023	clinical	patient	Ovarian	Ovarian				67	unknown			False	659_db9_T1_TRNA_1	tRNA	altera_exact	ssf		16.5		79.94						False		cgp_rna_exp0034_lib_s07	200.00		127.5	cgp_rna_exp0034	G01		False		659_db9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_db9_T1_TRNA_1_B2372Y3LT4_1	BND	chr3	chr3	OXNAD1	PPARG	16303592	12470821	chr3:16303592-chr3:12470821	+,+	Arriba	1	0	18		18	PASS	stop-codon	OXNAD1--PPARG	OXNAD1--PPARG	confidence:high;duplicates(3),mismatches(1)	high	duplication	3'UTR/splice-site	intergenic	564	7	3.0	1.0	0.0	0.0									12	6		duplicates(3),mismatches(1)		PASS		False	chr3:16303592	chr3:12470821	chr3:16303592-chr3:12470821	.	.	high	564	7	downstream	upstream	0		duplicates(3),mismatches(1)	CAAAAGAGACTTTGTTCTATATTTGTGGCCCACCTCCAATGACAGACTTTTTCTCCAAGCAACTGGAAAACAACCATGTACCCAAAGAACACATTTGCTTTGAGAAGTGGTGGTAGGAGGCAGACAAAGGCAGAAAAAATAAAGAG|CAAGGCCCAGAAAGCTACCACCTGCTGCTGTTTCTGCCTCTTCTGGCCATTCAACAAGTGTTCACTGATGACTCTCGGGAGAAAGTCAAGGCACAGAGATGAATAAGGCCCAGGCCCCGCCCTGCAGACCCCCAGGCCACTGGATGACATCCC	OXNAD1	PPARG(36465),TSEN2(13611)	ENSG00000154814	.	.	LH00166:186:2372Y3LT4:8:1141:27058:10458,LH00166:186:2372Y3LT4:8:1436:49038:21878,LH00166:186:2372Y3LT4:8:1436:49055:21878,LH00166:186:2372Y3LT4:8:2114:45309:1098,LH00166:186:2372Y3LT4:8:2150:40317:3242,LH00166:186:2372Y3LT4:8:2253:24283:25101,LH00166:186:2372Y3LT4:8:2307:32875:21486,LH00166:186:2372Y3LT4:8:1128:12795:18459,LH00166:186:2372Y3LT4:8:1283:40115:3816,LH00166:186:2372Y3LT4:8:1325:14195:22341,LH00166:186:2372Y3LT4:8:1325:14203:22355,LH00166:186:2372Y3LT4:8:1325:32591:4517,LH00166:186:2372Y3LT4:8:1328:19720:3859,LH00166:186:2372Y3LT4:8:1405:4713:27105,LH00166:186:2372Y3LT4:8:1413:24267:14816,LH00166:186:2372Y3LT4:8:2142:37640:11355,LH00166:186:2372Y3LT4:8:2187:13006:14003,LH00166:186:2372Y3LT4:8:2235:40876:28030,LH00166:186:2372Y3LT4:8:2267:41685:11663,LH00166:186:2372Y3LT4:8:2323:49516:28730,LH00166:186:2372Y3LT4:8:2326:47534:16750,LH00166:186:2372Y3LT4:8:2437:32389:21206	stop-codon	Oxidoreductase_NAD-binding_domain_(100%)|	3'UTR/splice-site	intergenic	12	6	+/+	./+	.	18	ENST00000606098	.	duplication	0.020833333333333332	0.46153846153846156	0.24118589743589744																																						659_db9	Arriba
fp_audit	659_epJ	fusion	AC007091--ETV1	ETV1--AC007091	AC007091--ETV1	FP	FP		Arriba		cgp_rna_exp0034	659_epJ	altera_exact	1023	clinical	patient	Melanoma	Melanoma				79	unknown			False	659_epJ_T1_TRNA_1	tRNA	altera_exact	ssf		20.2		84.19						False		cgp_rna_exp0034_lib_s11	200.00		71.00	cgp_rna_exp0034	C02		False		659_epJ_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_epJ_T1_TRNA_1_B2372Y3LT4_1	BND	chr7	chr7	ETV1	AC007091	13977427	19601741	chr7:13977427-chr7:19601741	-,+	Arriba	1	1	2		3	PASS	out-of-frame	ETV1--AC007091	AC007091--ETV1	confidence:medium;duplicates(7)	medium	inversion	CDS/splice-site	intergenic	9408	6	7.0	0.0	0.0	0.0									2	0	False	duplicates(7)		FAIL		False	chr7:13977427	chr7:19601741	chr7:13977427-chr7:19601741	.	.	medium	9408	6	upstream	upstream	1	confidence_below_min(medium<high);total_reads_below_min(3.0<8.0)	duplicates(7)	CGAGAAACCAACAAATGTCAGGAAAAGAAAATTCATTAACAGAGATCTGGCTCATGATTCAGAAG___AACTCTTTCAAGATCTAAGTCAATTACAGGAAACATGGCTTGCAGAAG___CTCAGGTACCTGACAATGATGAGCAGTTTGTACCAGACTATCAGGCTGAAAGTT|GTATTACATGGTGCCACAATTCTTGCACTGGTTCCTTTTCATCTGGATATGCTGGCCCTTCTAATTTTG___CTTGTTGGATAAAAAGGAATGAACAGGAGCTCACCAGCCATCAGAGAATTGCAGCTAACCCTAG___GTTAAGAAAGAATAACCAAG	ETV1	AC007091.1(23135),POLR1F(93720)	ENSG00000006468	.	EKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAES|citwchnsctgsfssgyagpsnfacwikrneqeltshqriaanprlrknnq	LH00166:186:2372Y3LT4:8:2130:14680:15026,LH00166:186:2372Y3LT4:8:2185:12099:7025,LH00166:186:2372Y3LT4:8:2257:49686:11061,LH00166:186:2372Y3LT4:8:2257:49702:11061,LH00166:186:2372Y3LT4:8:2482:20028:2569,LH00166:186:2372Y3LT4:8:1220:27859:16582,LH00166:186:2372Y3LT4:8:1228:3370:17549,LH00166:186:2372Y3LT4:8:1234:22398:3873,LH00166:186:2372Y3LT4:8:2287:37429:15671,LH00166:186:2372Y3LT4:8:2431:29323:9505	out-of-frame	PEA3_subfamily_ETS-domain_transcription_factor_N_terminal_domain(24%)|	CDS/splice-site	intergenic	2	0	-/-	./+	.	3	ENST00000430479	.	inversion	0.00026566069815631474	0.07692307692307693	0.03859436881061662																																						659_epJ	Arriba
fp_audit	659_epJ	fusion	CAMK2D--FGFR3	FGFR3--CAMK2D	CAMK2D--FGFR3	FP	FP		Arriba		cgp_rna_exp0034	659_epJ	altera_exact	1023	clinical	patient	Melanoma	Melanoma				79	unknown			False	659_epJ_T1_TRNA_1	tRNA	altera_exact	ssf		20.2		84.19						False		cgp_rna_exp0034_lib_s11	200.00		71.00	cgp_rna_exp0034	C02		False		659_epJ_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_epJ_T1_TRNA_1_B2372Y3LT4_1	BND	chr4	chr4	FGFR3	CAMK2D	1808856	113610080	chr4:1808856-chr4:113610080	+,-	Arriba	1	0	3		3	PASS		FGFR3--CAMK2D	CAMK2D--FGFR3	confidence:low;duplicates(3)	low	inversion	3'UTR	intron	654	2	3.0	0.0	0.0	0.0									3	0		duplicates(3)		FAIL		False	chr4:1808856	chr4:113610080	chr4:1808856-chr4:113610080	.	.	low	654	2	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(3.0<8.0)	duplicates(3)	GTCTGGGCAGCTGTCCCTTGCTTGCCTGCAGGGCCATGGCTCAGGGTGGTCTCTTCTTGGGGCCCAGTGCATGGTGGCCAGAGGTGTCACCCAAACCGGCAGGTGCGATTTTGTTAACCCAGCGACGAACTTTCCGAAAAATAAAGACAC|CTGAAGCTAAAATAAAAGTAAAAAATAAAAATAAATAAGCAAAAAAAAAAAG	FGFR3	CAMK2D	ENSG00000068078	ENSG00000145349	.	LH00166:186:2372Y3LT4:8:1417:45835:4699,LH00166:186:2372Y3LT4:8:1422:48844:11930,LH00166:186:2372Y3LT4:8:2214:26742:18319,LH00166:186:2372Y3LT4:8:2217:44063:1575,LH00166:186:2372Y3LT4:8:2223:8111:6171,LH00166:186:2372Y3LT4:8:2450:28700:18319	.	Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%)|Calcium/calmodulin_dependent_protein_kinase_II_association_domain(100%),Protein_kinase_domain(78%)	3'UTR	intron	3	0	+/+	-/-	.	3	ENST00000412135	.	inversion	0.0045662100456621	0.0	0.00228310502283105																																						659_epJ	Arriba
fp_audit	659_w	fusion	ESR1--SNX9	SNX9--ESR1	ESR1--SNX9	FP	FP		Arriba		cgp_rna_exp0034	659_w	altera_exact	1023	clinical	patient	Breast	Breast				72	unknown			False	659_w_T1_TRNA_1	tRNA	altera_exact	ssf		355.00		49.81						False		cgp_rna_exp0034_lib_s13	200.00		20.33	cgp_rna_exp0034	E02		False		659_w_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_w_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	SNX9	ESR1	157823446	151880655	chr6:157823446-chr6:151880655	+,+	Arriba	1	0	1		1	PASS	out-of-frame	SNX9--ESR1	ESR1--SNX9	confidence:low;duplicates(2)	low	duplication	CDS/splice-site	CDS/splice-site	1224	3343	2.0	0.0	0.0	0.0									1	0	False	duplicates(2)		FAIL		False	chr6:157823446	chr6:151880655	chr6:157823446-chr6:151880655	.	.	low	1224	3343	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	CGGGGCCCAGCCGGAGCCGCCGCCCTCGCCCTTGCCTTTGCCTGCGCGGCTCAGAATCACCATCCGCGGCGCGGGAGACGAGCCGGCCGTCCCGGGCCGGGGGACCCGCCCGCCATGGCCACCAAG|GACATAACGACgATATGTGTCCAGCCACCAACCAG	SNX9	ESR1	ENSG00000130340	ENSG00000091831	MATK|ditticvqppt	LH00166:186:2372Y3LT4:8:1170:22010:6227,LH00166:186:2372Y3LT4:8:1278:34921:8497,LH00166:186:2372Y3LT4:8:1370:32413:2163	out-of-frame	|Ligand-binding_domain_of_nuclear_hormone_receptor(99%),Oestrogen-type_nuclear_receptor_final_C-terminal_(100%),Oestrogen_receptor(1%),Zinc_finger__C4_type_(two_domains)(70%)	CDS/splice-site	CDS/splice-site	1	0	+/+	+/+	.	1	ENST00000392185	ENST00000440973	duplication	0.0008163265306122449	0.0	0.00040816326530612246																																						659_w	Arriba
fp_audit	659_w	fusion	ESR1--SNX9	SNX9--ESR1	ESR1--SNX9	FP	FP		Arriba		cgp_rna_exp0034	659_w	altera_exact	1023	clinical	patient	Breast	Breast				72	unknown			False	659_w_T1_TRNA_1	tRNA	altera_exact	ssf		355.00		49.81						False		cgp_rna_exp0034_lib_s13	200.00		20.33	cgp_rna_exp0034	E02		False		659_w_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_w_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	SNX9	ESR1	157823446	151944173	chr6:157823446-chr6:151944173	+,+	Arriba	1	0	1		1	PASS	out-of-frame	SNX9--ESR1	ESR1--SNX9	confidence:low;duplicates(5)	low	duplication	CDS/splice-site	CDS/splice-site	1224	6916	5.0	0.0	0.0	0.0									1	0	False	duplicates(5)		FAIL		False	chr6:157823446	chr6:151944173	chr6:157823446-chr6:151944173	.	.	low	1224	6916	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(5)	GCTGGGCCTGAGCGTCGAGACTCGGGGCCGAGGCGGAGGAGCGGCCGCCGCGCCGGGGCCCAGCCGGAGCCGCCGCCCTCGCCCTTGCCTTTGCCTGCGCGGCTCAGAATCACCATCCGCGGCGCGGGAGACGAGCCGGCCGTCCCGGGCCGGGGGACCCGCCCGCCATGGCCACCAAG|GGATACGAAAAGACCGAAGAGGAGG	SNX9	ESR1	ENSG00000130340	ENSG00000091831	MATK|gyekteee	LH00166:186:2372Y3LT4:8:1197:18919:22173,LH00166:186:2372Y3LT4:8:1296:40787:28128,LH00166:186:2372Y3LT4:8:1306:18321:15166,LH00166:186:2372Y3LT4:8:2112:23061:21472,LH00166:186:2372Y3LT4:8:2196:26119:16035,LH00166:186:2372Y3LT4:8:2196:26128:16021	out-of-frame	|Ligand-binding_domain_of_nuclear_hormone_receptor(99%),Oestrogen-type_nuclear_receptor_final_C-terminal_(100%),Oestrogen_receptor(0%)	CDS/splice-site	CDS/splice-site	1	0	+/+	+/+	.	1	ENST00000392185	ENST00000440973	duplication	0.0008163265306122449	0.0	0.00040816326530612246																																						659_w	Arriba
fp_audit	659_w	fusion	ESR1--SNX9	SNX9--ESR1	ESR1--SNX9	FP	FP		Arriba		cgp_rna_exp0034	659_w	altera_exact	1023	clinical	patient	Breast	Breast				72	unknown			False	659_w_T1_TRNA_1	tRNA	altera_exact	ssf		355.00		49.81						False		cgp_rna_exp0034_lib_s13	200.00		20.33	cgp_rna_exp0034	E02		False		659_w_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_w_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	SNX9	ESR1	157823446	152060991	chr6:157823446-chr6:152060991	+,+	Arriba	1	0	1		1	PASS	out-of-frame	SNX9--ESR1	ESR1--SNX9	confidence:low;duplicates(2)	low	duplication	CDS/splice-site	CDS/splice-site	1224	6618	2.0	0.0	0.0	0.0									1	0	False	duplicates(2)		FAIL		False	chr6:157823446	chr6:152060991	chr6:157823446-chr6:152060991	.	.	low	1224	6618	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	duplicates(2)	GGCTGGGCCTGAGCGTCGAGACTCGGGGCCGAGGCGGAGGAGCGGCCGCCGCGCCGGGGCCCAGCCGGAGCCGCCGCCCTCGCCCTTGCCTTTGCCTGCGCGGCTCAGAATCACCATCCGCGGCGCGGGAGACGAGCCGGCCGTCCCGGGCCGGGGGACCCGCCCGCCATGGCCACCAAG|GAACCAGGGAAAATGTGTAGAGGGCATGGTGGAGATCTTCGACATGC	SNX9	ESR1	ENSG00000130340	ENSG00000091831	MATK|epgkmcrghggdlrh	LH00166:186:2372Y3LT4:8:2259:28102:19020,LH00166:186:2372Y3LT4:8:2259:28110:19006,LH00166:186:2372Y3LT4:8:2259:28118:19020	out-of-frame	|Ligand-binding_domain_of_nuclear_hormone_receptor(67%),Oestrogen-type_nuclear_receptor_final_C-terminal_(100%),Oestrogen_receptor(0%)	CDS/splice-site	CDS/splice-site	1	0	+/+	+/+	.	1	ENST00000392185	ENST00000440973	duplication	0.0008163265306122449	0.0	0.00040816326530612246																																						659_w	Arriba
fp_audit	659_w9	fusion	CCDC170--ESR1	CCDC170--ESR1	CCDC170--ESR1	FP	FP		Arriba		cgp_rna_exp0034	659_w9	altera_exact	1023	clinical	patient	Cutaneous Squamous Cell Carcinoma	Cutaneous Squamous Cell Carcinoma				70	unknown			False	659_w9_T1_TRNA_1	tRNA	altera_exact	ssf		270.00		68.89						False		cgp_rna_exp0034_lib_s03	200.00		50.48	cgp_rna_exp0034	C01		False		659_w9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_w9_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	CCDC170	ESR1	151629982	151807843	chr6:151629982-chr6:151807843	+,+	Arriba	1	0	4		4	PASS		CCDC170--ESR1	CCDC170--ESR1	confidence:low;duplicates(5)	low	deletion/read-through	intergenic	5'UTR/splice-site	5	353	5.0	0.0	0.0	0.0									1	3		duplicates(5)		FAIL		False	chr6:151629982	chr6:151807843	chr6:151629982-chr6:151807843	.	.	low	5	353	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(4.0<8.0)	duplicates(5)	GCCTGAGCTAAGACA___GGGCCCATTGTCAGGCCTGAAGCTGGGTATCTGACCAGGTTGTGCCCTGTCCTACACGGGAGTGGGAACTGCTCTGTACCTAGGCGTCTGCCACTGACTCAGAAGTCCAG|GTGGCCCGCCGGTTTCTGAGCCTTCTGCCCTGCGGGGACACGGTCTGCACCCTGCCCGCGGCCACGGACCATGACCATGACCCTCCACACCAAAGCATCcGGGATGGCCCTACTGCATCAGATCCAAGGGAACGAGCTGGAGCCCCTGAACCGTCCGCAGCTCAAGATCCCCC	CCDC170(8789),ESR1(26709)	ESR1	.	ENSG00000091831	.	LH00166:186:2372Y3LT4:8:2339:23353:28562,LH00166:186:2372Y3LT4:8:1143:35099:24863,LH00166:186:2372Y3LT4:8:1143:35107:24877,LH00166:186:2372Y3LT4:8:1245:42688:19875,LH00166:186:2372Y3LT4:8:1298:45616:28646,LH00166:186:2372Y3LT4:8:2181:31685:5806,LH00166:186:2372Y3LT4:8:2267:19874:21080,LH00166:186:2372Y3LT4:8:2395:44896:26110,LH00166:186:2372Y3LT4:8:2465:48504:11285	.	|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),Oestrogen-type_nuclear_receptor_final_C-terminal_(100%),Oestrogen_receptor(100%),Zinc_finger__C4_type_(two_domains)(100%)	intergenic	5'UTR/splice-site	1	3	./+	+/+	.	4	.	ENST00000440973	deletion/read-through	0.16666666666666666	0.008426966292134831	0.08754681647940074																																						659_w9	Arriba
fp_audit	659_w9	fusion	CCDC170--ESR1	CCDC170--ESR1	CCDC170--ESR1	FP	FP		Arriba		cgp_rna_exp0034	659_w9	altera_exact	1023	clinical	patient	Cutaneous Squamous Cell Carcinoma	Cutaneous Squamous Cell Carcinoma				70	unknown			False	659_w9_T1_TRNA_1	tRNA	altera_exact	ssf		270.00		68.89						False		cgp_rna_exp0034_lib_s03	200.00		50.48	cgp_rna_exp0034	C01		False		659_w9_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_w9_T1_TRNA_1_B2372Y3LT4_1	BND	chr6	chr6	CCDC170	ESR1	151629982	151807843	chr6:151629982-chr6:151807843	+,+	Arriba	1	0	4		4	PASS		CCDC170--ESR1	CCDC170--ESR1	confidence:low;duplicates(5)	low	deletion/read-through	intergenic	5'UTR/splice-site	5	353	5.0	0.0	0.0	0.0									1	3		duplicates(5)		FAIL		False	chr6:151629982	chr6:151807843	chr6:151629982-chr6:151807843	.	.	low	5	353	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(4.0<8.0)	duplicates(5)	GCCTGAGCTAAGACA___GGGCCCATTGTCAGGCCTGAAGCTGGGTATCTGACCAGGTTGTGCCCTGTCCTACACGGGAGTGGGAACTGCTCTGTACCTAGGCGTCTGCCACTGACTCAGAAGTCCAG|GTGGCCCGCCGGTTTCTGAGCCTTCTGCCCTGCGGGGACACGGTCTGCACCCTGCCCGCGGCCACGGACCATGACCATGACCCTCCACACCAAAGCATCcGGGATGGCCCTACTGCATCAGATCCAAGGGAACGAGCTGGAGCCCCTGAACCGTCCGCAGCTCAAGATCCCCC	CCDC170(8789),ESR1(26709)	ESR1	.	ENSG00000091831	.	LH00166:186:2372Y3LT4:8:2339:23353:28562,LH00166:186:2372Y3LT4:8:1143:35099:24863,LH00166:186:2372Y3LT4:8:1143:35107:24877,LH00166:186:2372Y3LT4:8:1245:42688:19875,LH00166:186:2372Y3LT4:8:1298:45616:28646,LH00166:186:2372Y3LT4:8:2181:31685:5806,LH00166:186:2372Y3LT4:8:2267:19874:21080,LH00166:186:2372Y3LT4:8:2395:44896:26110,LH00166:186:2372Y3LT4:8:2465:48504:11285	.	|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),Oestrogen-type_nuclear_receptor_final_C-terminal_(100%),Oestrogen_receptor(100%),Zinc_finger__C4_type_(two_domains)(100%)	intergenic	5'UTR/splice-site	1	3	./+	+/+	.	4	.	ENST00000440973	deletion/read-through	0.16666666666666666	0.008426966292134831	0.08754681647940074																																						659_w9	Arriba
fp_audit	659_z2	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		cgp_rna_exp0034	659_z2	altera_exact	1023	clinical	patient	Lung	Lung				57	unknown			False	659_z2_T1_TRNA_1	tRNA	altera_exact	ssf		57.2		69.49						False		cgp_rna_exp0034_lib_s09	200.00		127.28	cgp_rna_exp0034	A02		False		659_z2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_z2_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243843282	chr1:243256240-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	1029	1446													0	1	False			FAIL		False	chr1:243256240	chr1:243843282	chr1:243256240-chr1:243843282	.	.	low	1029	1446	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	TGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	AKSPENSTLEEILGQYQRSLR|g*	LH00166:186:2372Y3LT4:8:1305:32494:4209	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.000691085003455425	0.0003455425017277125																																						659_z2	Arriba
fp_audit	659_z2	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		cgp_rna_exp0034	659_z2	altera_exact	1023	clinical	patient	Lung	Lung				57	unknown			False	659_z2_T1_TRNA_1	tRNA	altera_exact	ssf		57.2		69.49						False		cgp_rna_exp0034_lib_s09	200.00		127.28	cgp_rna_exp0034	A02		False		659_z2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_z2_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243426558	243843282	chr1:243426558-chr1:243843282	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	5'UTR/splice-site	544	1446													0	1	False			FAIL		False	chr1:243426558	chr1:243843282	chr1:243426558-chr1:243843282	.	.	low	544	1446	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	TGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	GRVHETMKQr|lshh*	LH00166:186:2372Y3LT4:8:2348:14688:16666	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	5'UTR/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000673466	inversion	0.0	0.000691085003455425	0.0003455425017277125																																						659_z2	Arriba
fp_audit	659_z2	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		cgp_rna_exp0034	659_z2	altera_exact	1023	clinical	patient	Lung	Lung				57	unknown			False	659_z2_T1_TRNA_1	tRNA	altera_exact	ssf		57.2		69.49						False		cgp_rna_exp0034_lib_s09	200.00		127.28	cgp_rna_exp0034	A02		False		659_z2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_z2_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243664883	chr1:243286397-chr1:243664883	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	443	6472													1	0	False			FAIL		False	chr1:243286397	chr1:243664883	chr1:243286397-chr1:243664883	.	.	low	443	6472	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GTCTCAATATATTCATCATTTAGAGGCAGAAGTTAAGTTCTGCAAG___GAGGAACTCTCTGGAATGAAAAATAAAATACAAGTAGTTGTGCTTGAAAACGAAGGGCTCCAGCAACAGCTAAAATCTCAAAGACAAGAGGAGACACTGAGGGAACAAACACTTCTGGATGCATCC|AATGCCAGTTAATGAAAACAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	SQYIHHLEAEVKFCKEELSGMKNKIQVVVLENEGLQQQLKSQRQEETLREQTLLDAS|nas*	LH00166:186:2372Y3LT4:8:2169:36992:1406	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0022522522522522522	0.0	0.0011261261261261261																																						659_z2	Arriba
fp_audit	659_z2	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		cgp_rna_exp0034	659_z2	altera_exact	1023	clinical	patient	Lung	Lung				57	unknown			False	659_z2_T1_TRNA_1	tRNA	altera_exact	ssf		57.2		69.49						False		cgp_rna_exp0034_lib_s09	200.00		127.28	cgp_rna_exp0034	A02		False		659_z2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_z2_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243286397	243545597	chr1:243286397-chr1:243545597	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	443	3233													0	1	False			FAIL		False	chr1:243286397	chr1:243545597	chr1:243286397-chr1:243545597	.	.	low	443	3233	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	GCTAAAATCTCAAAGACAAGAGGAGACACTGAGGGAACAAACACTTCTGGATGCATCC|CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG___CTTGTACCTCCTTTTcAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAGCTCAGAC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	LKSQRQEETLREQTLLDAS|pwwrtr*	LH00166:186:2372Y3LT4:8:2277:11323:5288	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(25%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(6%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.00030921459492888067	0.00015460729746444033																																						659_z2	Arriba
fp_audit	659_z2	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		cgp_rna_exp0034	659_z2	altera_exact	1023	clinical	patient	Lung	Lung				57	unknown			False	659_z2_T1_TRNA_1	tRNA	altera_exact	ssf		57.2		69.49						False		cgp_rna_exp0034_lib_s09	200.00		127.28	cgp_rna_exp0034	A02		False		659_z2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_z2_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243256240	243512426	chr1:243256240-chr1:243512426	+,-	Arriba	1	0	1		1	PASS	out-of-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	1029	3688													1	0	False			FAIL		False	chr1:243256240	chr1:243512426	chr1:243256240-chr1:243512426	.	.	low	1029	3688	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	ACGTAACTCCCAGCTCTGGGCCTAGAGTGCGTGCATGGCGAAGTCCCCGGAGAACTCTACCCTGGAGGAGATTCTGGGGCAGTATCAACGGAGTCTCCGGG|CTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAGCTCAGACTATTACAATAACACCACC	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	MAKSPENSTLEEILGQYQRSLR|actsf*	LH00166:186:2372Y3LT4:8:1460:23539:9856	out-of-frame	Centrosomal_colon_cancer_autoantigen_protein_family(2%)|Protein_kinase_C_terminal_domain(100%)	CDS/splice-site	CDS/splice-site	1	0	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.000970873786407767	0.0	0.0004854368932038835																																						659_z2	Arriba
fp_audit	659_z2	fusion	AKT3--SDCCAG8	SDCCAG8--AKT3	AKT3--SDCCAG8	FP	FP		Arriba		cgp_rna_exp0034	659_z2	altera_exact	1023	clinical	patient	Lung	Lung				57	unknown			False	659_z2_T1_TRNA_1	tRNA	altera_exact	ssf		57.2		69.49						False		cgp_rna_exp0034_lib_s09	200.00		127.28	cgp_rna_exp0034	A02		False		659_z2_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_z2_T1_TRNA_1_B2372Y3LT4_1	BND	chr1	chr1	SDCCAG8	AKT3	243344331	243512426	chr1:243344331-chr1:243512426	+,-	Arriba	1	0	1		1	PASS	in-frame	SDCCAG8--AKT3	AKT3--SDCCAG8	confidence:low	low	inversion	CDS/splice-site	CDS/splice-site	345	3688													0	1	True			FAIL		False	chr1:243344331	chr1:243512426	chr1:243344331-chr1:243512426	.	.	low	345	3688	downstream	downstream	0	confidence_below_min(low<high);total_reads_below_min(1.0<8.0)	.	AATAAAACCAACATGGAGAAGGATGAGGCAGAAAAGGAGCACAGAGAGTTCAGAGCAAAAACTAACAGGGATCTTGAAATTAAAGATCAG|CTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAG...TCTCCTAATGTAATTGAAGAAAACAGTCTTTTAAAAACTCATCTGATATTTTCAAGATCAAATTCCACAGTGACTTACTCCATTCTATTTAAGAATATTGAATATTGAATTGAATTTAAGAATATTGAGTTCCCAGTGGTAATATCAAAAG	SDCCAG8	AKT3	ENSG00000054282	ENSG00000117020	NKTNMEKDEAEKEHREFRAKTNRDLEIKDQ|LVPPFKPQVTSETDTRYFDE	LH00166:186:2372Y3LT4:8:1163:24332:14872	in-frame	Centrosomal_colon_cancer_autoantigen_protein_family(69%)|Protein_kinase_C_terminal_domain(100%)	CDS/splice-site	CDS/splice-site	0	1	+/+	-/-	.	1	ENST00000366541	ENST00000336199	inversion	0.0	0.0002710761724044456	0.0001355380862022228																																						659_z2	Arriba
fp_audit	659_zC	fusion	AC017101--KIF5B	KIF5B--AC017101	AC017101--KIF5B	FP	FP		Arriba		cgp_rna_exp0034	659_zC	altera_exact	1023	clinical	patient	Endometrial	Endometrial				75	unknown			False	659_zC_T1_TRNA_1	tRNA	altera_exact	ssf		970.00		75.56						False		cgp_rna_exp0034_lib_s10	200.00		29.32	cgp_rna_exp0034	B02		False		659_zC_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_zC_T1_TRNA_1_B2372Y3LT4_1	BND	chr10	chr2	KIF5B	AC017101	32022187	186642437	chr10:32022187-chr2:186642437	+,+	Arriba	1	0	3		3	PASS		KIF5B--AC017101	AC017101--KIF5B	confidence:low;duplicates(2)	low	translocation	CDS	intron	13666	2	2.0	0.0	0.0	0.0									3	0		duplicates(2)		FAIL		False	chr10:32022187	chr2:186642437	chr10:32022187-chr2:186642437	.	.	low	13666	2	downstream	upstream	0	confidence_below_min(low<high);total_reads_below_min(3.0<8.0)	duplicates(2)	GCTCTGGATCTGCTGTTCAACAGCTTG___CTTAACTTCATTTGCAGTCTGAACCTTATTTAAGTGCTCCTTTTCCATTTCATGGACTTTCT___CTTGTGCTCGAAGCTGGACTAGTTCTTCACTaAGGGCATCGACAGATT|TCACACCTGTCTTGTGGGTAGGTGCTGTCATTTACTAGATGTGTCATCTGGAAGATTAACCGTAGTCATTTCTTTTTCTTTGTTTCTTTCTTTTTTTTCTTTTTTTTTTTTTTTT	KIF5B	AC017101.1	ENSG00000170759	ENSG00000227227	.	LH00166:186:2372Y3LT4:8:1225:12002:19608,LH00166:186:2372Y3LT4:8:1313:39889:8721,LH00166:186:2372Y3LT4:8:2123:25699:28226,LH00166:186:2372Y3LT4:8:2188:3589:4727,LH00166:186:2372Y3LT4:8:2377:4988:6114	.	.	CDS	intron	3	0	-/+	-/+	.	3	.	.	translocation	0.00021947472382763918	0.0	0.00010973736191381959																																						659_zC	Arriba
fp_audit	659_zC	fusion	AL049828--ERG	ERG--AL049828	AL049828--ERG	FP	FP		Arriba		cgp_rna_exp0034	659_zC	altera_exact	1023	clinical	patient	Endometrial	Endometrial				75	unknown			False	659_zC_T1_TRNA_1	tRNA	altera_exact	ssf		970.00		75.56						False		cgp_rna_exp0034_lib_s10	200.00		29.32	cgp_rna_exp0034	B02		False		659_zC_T1_TRNA_1_B2372Y3LT4_1	cgp_rna_exp0034	8	1.00	False		nfcore_rnafusion	659_zC_T1_TRNA_1_B2372Y3LT4_1	BND	chr21	chr14	ERG	AL049828	38575662	39470649	chr21:38575662-chr14:39470649	-,-	Arriba	1	0	3		3	PASS	out-of-frame	ERG--AL049828	AL049828--ERG	confidence:high;duplicates(14)	high	translocation/5'-5'	CDS/splice-site	exon	1512	3	14.0	0.0	0.0	0.0									2	1	False	duplicates(14)		FAIL		False	chr21:38575662	chr14:39470649	chr21:38575662-chr14:39470649	.	.	high	1512	3	upstream	downstream	0	total_reads_below_min(3.0<8.0)	duplicates(14)	TGCAACTTTTCTGTCCCATATGGCCCCGTCCACAGCTCTGTGCATGGG___CCGTCAGGTTCTGAACAGCTGGTAGATGGGCTGGCTTACTGAAGGACATGATTCAGACTGTCCCGGACCCAGCAGCTCATATCAAG|CATCGACTGGGGAAGCTTGAAGGCTGGAGACTAGAATCATCTGAAGGTTCATTCATATACCTGGTGGTTGAGTCTGGCTATTAGTTGAAAC	ERG	AL049828.1	ENSG00000157554	ENSG00000258526	MIQTVPDPAAHIK|hrlgklegwrlessegsfiylvvesgy*	LH00166:186:2372Y3LT4:8:1150:11582:27287,LH00166:186:2372Y3LT4:8:1264:13612:11775,LH00166:186:2372Y3LT4:8:1434:33862:27259,LH00166:186:2372Y3LT4:8:1163:38279:8987,LH00166:186:2372Y3LT4:8:1222:17172:3340,LH00166:186:2372Y3LT4:8:1222:17180:3326,LH00166:186:2372Y3LT4:8:1323:23070:15797,LH00166:186:2372Y3LT4:8:1354:48691:28310,LH00166:186:2372Y3LT4:8:1369:20173:7922,LH00166:186:2372Y3LT4:8:1376:41426:9477,LH00166:186:2372Y3LT4:8:1407:17212:18235,LH00166:186:2372Y3LT4:8:1407:35245:17100,LH00166:186:2372Y3LT4:8:1409:22406:21318,LH00166:186:2372Y3LT4:8:2208:22972:18627,LH00166:186:2372Y3LT4:8:2255:39023:22018,LH00166:186:2372Y3LT4:8:2285:35229:6423,LH00166:186:2372Y3LT4:8:2368:16565:27848	out-of-frame	.	CDS/splice-site	exon	2	1	-/-	+/-	.	3	ENST00000442448	.	translocation/5'-5'	0.001321003963011889	0.25	0.12566050198150594																																						659_zC	Arriba