.command.sh - Workdir - RECALL:RESOLVE_GENE_TIER (TSO500)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/29b8d65f6ea3b0c322505bce0edb10/.command.sh
Size: 455 bytes
Task: RECALL:RESOLVE_GENE_TIER (TSO500)
Attempt

Content

#!/bin/bash -euo pipefail
resolve_gene_tier.py \
    --gene-tiers reference/gene_tiers.yaml \
    --gene-tier 'TSO500' \
    --output selected_gene_list.txt \
    --selected-tier selected_gene_tier.txt \
    --test-tsv test_harmonized_calls.tsv \
    --truth-tsv truth_harmonized_calls.tsv

cat <<-END_VERSIONS > versions.yml
"RECALL:RESOLVE_GENE_TIER":
    python: $(python --version 2>&1 | sed 's/Python //')
    resolve_gene_tier: "1.0.0"
END_VERSIONS