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qc_metrics.tsv
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s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/a5f7c17419c7c7226bf1a4628b41e2/qc_metrics.tsv
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Task
RECALL:COLLECT_QC_METRICS (qc)
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harmonized_s3_path local_qc_path multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts multiqc_Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm multiqc_Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean multiqc_Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median multiqc_Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct multiqc_Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads multiqc_Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct multiqc_Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30 multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target multiqc_Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads multiqc_FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length multiqc_FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length multiqc_FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates multiqc_FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails multiqc_FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc multiqc_FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences multiqc_FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length multiqc_FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length multiqc_FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates multiqc_FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails multiqc_FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc multiqc_FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences multiqc_Kallisto_mqc-generalstats-kallisto-fragment_length multiqc_Kallisto_mqc-generalstats-kallisto-percent_aligned multiqc_Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads multiqc_Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean multiqc_Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median multiqc_Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION multiqc_Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES multiqc_Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES multiqc_RSeQC_mqc-generalstats-rseqc-proper_pairs_percent multiqc_STAR_mqc-generalstats-star-uniquely_mapped multiqc_STAR_mqc-generalstats-star-uniquely_mapped_percent multiqc_fastp_mqc-generalstats-fastp-after_filtering_gc_content multiqc_fastp_mqc-generalstats-fastp-after_filtering_q30_bases multiqc_fastp_mqc-generalstats-fastp-after_filtering_q30_rate multiqc_fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads multiqc_fastp_mqc-generalstats-fastp-pct_adapter multiqc_fastp_mqc-generalstats-fastp-pct_duplication multiqc_fastp_mqc-generalstats-fastp-pct_surviving patient_id qc_calculated_sex qc_calculated_sex_secondary qc_normal_contamination qc_tso500_seq_pass qc_tso500_wetlab_pass qc_tumor_contamination qc_tumor_normal_correlation s3_path s3_path_qc sample_id sample_type sequencing_library_id specimen_id specimen_type stats_rna_exon_skipping_total_num stats_rna_fusion_actionable_num stats_rna_fusion_filtered_num stats_rna_fusion_total_num summary_json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.47 0.72 0.0 0.0 0.01 0.02 0.76 2.33 112.9 107.0 387745605.0 9999000000.0 0.0 No 0.611956 0.739943 0.504622 0.035332 0.964668 0.045735 0.938669 0.007726 0.0 424.876729 0.973144 5022460.0 137129597.0 190.0 588455546.0 13332187.0 273629254.0 291507724.0 111.69967040466979 112 82.58089193103532 9.090909090909092 58.0 294227773.0 111.69967040466979 112 82.58089193103532 9.090909090909092 58.0 294227773.0 112.9 98.24955953427279 289077491.0 155.43559 112 0.508551 97.38289999999999 0.0 84.63507922902441 277109173.0 94.18 0.577948 63784953000.0 0.971871 588455546.0 81.27013483333333 24.729699999999998 98.07592433333333 1173_9C s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_9C_T1_RNA_SLD_01 tRNA 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1 1173_9C clinical 2136 1 10 129 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.42 0.68 0.0 0.0 0.01 0.01 1.95 5.59 111.1 105.0 381735119.0 9999000000.0 0.0 No 0.604431 0.73208 0.508127 0.042882 0.957118 0.052349 0.931567 0.007911 0.0 396.627584 0.974775 5815016.0 129790076.0 189.0 565174502.0 14552614.0 258970123.0 277994044.0 109.75514660426064 107 82.08691516827011 9.090909090909092 53.0 282587251.0 109.75514660426064 107 82.08691516827011 9.090909090909092 53.0 282587251.0 111.1 97.89047418844808 276626000.0 140.39367 106 0.512179 97.01429999999999 0.0 83.0455095872516 263637311.0 93.29 0.534836 60317899730.0 0.973739 565174502.0 82.81798903271778 25.918799999999997 98.45157189258633 1173_BEE s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_BEE_T1_RNA_SLD_01 tRNA 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1 1173_BEE clinical 1571 0 5 20 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.52 0.78 0.0 0.0 0.02 0.04 1.08 3.17 113.5 106.0 380684528.0 9999000000.0 0.0 No 0.532678 0.690022 0.384133 0.030029 0.969971 0.040118 0.946597 0.008182 0.0 280.961851 0.973775 2766660.0 89366598.0 119.0 305780254.0 7555089.0 178263193.0 188320050.0 111.79166754175043 112 76.54007468064803 9.090909090909092 56.0 152890127.0 111.79166754175043 112 76.54007468064803 9.090909090909092 56.0 152890127.0 113.5 98.28354711223439 150265840.0 166.633973 112 0.387301 97.53500000000001 0.0 85.11820451406214 143621131.0 93.94 0.561282 33197572520.0 0.972583 305780254.0 79.7239754750097 16.517699999999998 98.18136715703132 1173_C31 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_C31_T1_RNA_SLD_01 tRNA 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2 1173_C31 clinical 913 0 0 2 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.summary.json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.52 0.78 0.0 0.0 0.02 0.04 1.08 3.17 113.5 106.0 380684528.0 9999000000.0 0.0 No 0.532678 0.690022 0.384133 0.030029 0.969971 0.040118 0.946597 0.008182 0.0 280.961851 0.973775 2766660.0 89366598.0 119.0 305780254.0 7555089.0 178263193.0 188320050.0 111.79166754175043 112 76.54007468064803 9.090909090909092 56.0 152890127.0 111.79166754175043 112 76.54007468064803 9.090909090909092 56.0 152890127.0 113.5 98.28354711223439 150265840.0 166.633973 112 0.387301 97.53500000000001 0.0 85.11820451406214 143621131.0 93.94 0.561282 33197572520.0 0.972583 305780254.0 79.7239754750097 16.517699999999998 98.18136715703132 1173_C31 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_C31_T1_RNA_SLD_01 tRNA 1173_C31_T1_RNA_SLD_01_A23T55JLT4_1 1173_C31 clinical 572 0 0 6 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.35 0.59 0.0 0.0 0.0 0.01 0.64 2.04 109.0 104.0 120488245.0 9999000000.0 0.0 No 0.424815 0.634378 0.604717 0.048666 0.951334 0.057241 0.923306 0.00769 0.0 181.216951 0.973884 3229116.0 63123123.0 69.0 345689872.0 7821723.0 126165247.0 136645184.0 108.4641352697773 107 82.92066241406351 9.090909090909092 58.0 172844936.0 108.4641352697773 107 82.92066241406351 9.090909090909092 58.0 172844936.0 109.0 98.10296380334799 169566005.0 132.691708 106 0.609403 97.10069999999999 0.0 84.38571633086504 162719632.0 94.14 0.58259 36413453121.0 0.972736 345689872.0 85.24147012230118 32.014199999999995 98.3512630444638 1173_CH0 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_CH0_T1_RNA_SLD_01 tRNA 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2 1173_CH0 clinical 1028 0 0 29 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.summary.json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.35 0.59 0.0 0.0 0.0 0.01 0.64 2.04 109.0 104.0 120488245.0 9999000000.0 0.0 No 0.424815 0.634378 0.604717 0.048666 0.951334 0.057241 0.923306 0.00769 0.0 181.216951 0.973884 3229116.0 63123123.0 69.0 345689872.0 7821723.0 126165247.0 136645184.0 108.4641352697773 107 82.92066241406351 9.090909090909092 58.0 172844936.0 108.4641352697773 107 82.92066241406351 9.090909090909092 58.0 172844936.0 109.0 98.10296380334799 169566005.0 132.691708 106 0.609403 97.10069999999999 0.0 84.38571633086504 162719632.0 94.14 0.58259 36413453121.0 0.972736 345689872.0 85.24147012230118 32.014199999999995 98.3512630444638 1173_CH0 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_CH0_T1_RNA_SLD_01 tRNA 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1 1173_CH0 clinical 164 0 0 10 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.34 0.54 0.0 0.0 0.01 0.02 0.68 2.17 115.1 108.0 230091914.0 9999000000.0 0.04 Yes 0.626353 0.766883 0.574719 0.038793 0.961207 0.049646 0.928687 0.009214 0.0 349.67774 0.973613 4482171.0 111059402.0 187.0 560658426.0 11837420.0 221433753.0 238437358.0 114.3694538820683 112 83.7057829575123 9.090909090909092 56.0 280329213.0 114.3694538820683 112 83.7057829575123 9.090909090909092 56.0 280329213.0 115.1 98.39204271586209 275821639.0 170.990581 116 0.580064 97.4205 0.0 85.28223122790523 264001606.0 94.18 0.560096 62271653780.0 0.9724 560658426.0 78.69776654312884 31.985000000000003 98.21741358113411 1173_GZ1 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_GZ1_T1_RNA_SLD_01 tRNA 1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2 1173_GZ1 clinical 1749 2 0 7 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2/1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2.summary.json
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.56 0.85 0.0 0.0 0.01 0.03 1.49 4.39 126.7 117.0 630378555.0 9999000000.0 0.09 Yes 0.633048 0.743488 0.439763 0.02886 0.97114 0.041253 0.947896 0.006079 0.0 558.105332 0.9742 4686734.0 157707626.0 244.0 590787476.0 13654111.0 313735638.0 330981188.0 120.04191775047039 122 82.5816568581307 9.090909090909092 53.0 295393738.0 120.04191775047039 122 82.5816568581307 9.090909090909092 53.0 295393738.0 126.7 98.40767172931743 290690100.0 272.254292 133 0.442452 97.7604 0.0 89.66314675395431 282729065.0 95.71 0.532583 68954177514.0 0.973179 590787476.0 69.24443616666667 25.2205 98.46457933333333 1173_NWE s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_NWE_T1_RNA_SLD_01 tRNA 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1 1173_NWE clinical 2290 1 38 245 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
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s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 1173_OHF 1173_OHF_T1_RNA_SLD_01 tRNA 1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1 1173_OHF clinical 11 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1/1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 0.27 0.47 0.0 0.0 0.01 0.01 1.06 3.36 112.1 106.0 291940231.0 9999000000.0 0.65 Yes 0.599514 0.738118 0.48114 0.040143 0.959857 0.049111 0.935337 0.008069 0.0 340.054575 0.974278 4693910.0 112237018.0 171.0 461947406.0 11771296.0 224187033.0 239685830.0 110.4998501799142 107 76.127371836837 9.090909090909092 54.0 230973703.0 110.4998501799142 107 76.127371836837 9.090909090909092 54.0 230973703.0 112.1 98.14862863414369 226697522.0 140.024077 108 0.485054 97.3302 0.0 86.16597103738806 218213184.0 94.48 0.54448 49590101294.0 0.972973 461947406.0 82.74845522581028 23.3903 98.14067886614029 1173_PCB s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204 s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats.txt 1173_PCB_T1_RNA_SLD_01 tRNA 1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1 1173_PCB clinical 515 1 4 19 s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_rna/hmnz_dev_rna_exp0016__2fc4034--20260601-114101/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1.summary.json
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