#!/bin/bash -euo pipefail
discover_truth_outputs.py \
    --manifest analysis_manifest.tsv \
    --truth-source tso500 \
    --output truth_matches.tsv \
    --audit truth_discover_audit.tsv \
    --harmonization-manifest tso500rna_harmonization_latest_2026-04-24.tsv \


cat <<-END_VERSIONS > versions.yml
"RECALL:DISCOVER_ALT_TRUTH":
    python: $(python --version 2>&1 | sed 's/Python //')
    discover_truth_outputs: "1.0.0"
END_VERSIONS