File Info

Filename
test_sample_1_analysis.txt
Full Path
s3://pltf-dev-user-anjain/test/1780634288/fastq_qc_analysis/test_sample_1_analysis.txt
Size
2.2 KB
Published
Jun 04, 2026 9:41 PM
=== FASTQ QC Analysis for test_sample_1 ===

Quality Distribution:
#SentieonCommandLine: /opt/sentieon/sentieon-genomics-202308.03/libexec/driver -r human_g1k_v37_decoy.fasta -t 8 -i test_sample_1_sorted.bam --algo QualDistribution test_sample_1_qd_metrics.txt
QUALITY	COUNT_OF_Q
2	32
13	259
27	262
32	792
38	4827
40	6408




Mean Quality by Cycle:
#SentieonCommandLine: /opt/sentieon/sentieon-genomics-202308.03/libexec/driver -r human_g1k_v37_decoy.fasta -t 8 -i test_sample_1_sorted.bam --algo MeanQualityByCycle test_sample_1_mq_metrics.txt
CYCLE	MEAN_QUALITY
1	29.870000
2	33.800000
3	35.670000
4	36.010000
5	35.620000
6	38.000000
7	37.930000
8	38.590000
9	39.160000
10	38.850000
11	38.230000
12	38.210000
13	38.010000
14	38.070000
15	38.840000
16	38.430000
17	37.930000
18	37.910000
19	38.250000
20	38.870000
21	39.060000
22	38.710000
23	38.540000
24	38.420000
25	38.630000
26	38.200000
27	37.900000
28	38.730000
29	37.160000
30	38.570000
31	38.990000
32	39.000000
33	38.480000
34	38.560000
35	38.830000
36	38.640000
37	38.270000
38	38.780000
39	37.310000
40	38.080000
41	38.380000
42	38.860000
43	39.010000
44	38.760000
45	38.590000
46	38.830000
47	38.720000
48	38.410000
49	38.730000
50	38.700000
51	38.770000
52	38.630000
53	38.120000
54	38.570000
55	38.330000
56	38.450000
57	37.830000
58	38.720000
59	38.560000
60	37.810000
61	38.220000
62	36.760000
63	38.290000
64	38.430000
65	38.580000
66	38.050000
67	38.230000
68	38.270000
69	38.320000
70	37.590000
71	37.250000
72	34.920000
73	36.660000
74	37.980000
75	37.540000
76	38.180000
77	38.380000
78	38.020000
79	38.020000
80	38.660000
81	38.140000
82	36.160000
83	37.880000
84	37.440000
85	37.260000
86	37.420000
87	37.370000
88	36.990000
89	37.790000
90	38.050000
91	37.700000
92	37.430000
93	37.250000
94	37.230000
95	37.390000
96	38.000000
97	37.670000
98	37.840000
99	37.700000
100	37.380000
101	37.720000
102	35.300000
103	36.620000
104	37.150000
105	38.060000
106	36.210000
107	36.940000
108	36.820000
109	37.260000
110	37.590000
111	36.650000
112	37.400000
113	38.250000
114	38.010000
115	37.500000
116	37.170000
117	37.150000
118	38.110000
119	37.950000
120	37.890000
121	38.150000
122	37.710000
123	36.960000
124	36.710000
125	36.750000
126	31.990000




Quality Check: PASS
Completed: Fri Jun  5 04:41:39 UTC 2026