#!/bin/bash -Ceuo pipefail
echo "=== Validating test_sample_1 ==="
validation_passed="false"
all_valid=true
for fastq in SRR7890919_WES_HCC1395BL-EA_normal_1.fastq.gz SRR7890919_WES_HCC1395BL-EA_normal_2.fastq.gz; do
if [[ ! -f "${fastq}" ]]; then
echo "ERROR: File not found: ${fastq}"
all_valid=false
elif [[ ! -s "${fastq}" ]]; then
echo "ERROR: File is empty: ${fastq}"
all_valid=false
else
echo "PASS: ${fastq}"
fi
done
if ${all_valid}; then
validation_passed="true"
fi
echo "Validation: ${validation_passed}"
echo "${validation_passed}" > validation_status.txt